BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012108
(471 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/460 (69%), Positives = 387/460 (84%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+QE+G HADN++FP+LLKAAG SS CIGL LHGQTIK GF HV+VQTALL MY S C
Sbjct: 41 VQEIGFHADNFTFPILLKAAGSWSSPCIGLALHGQTIKAGFSSHVFVQTALLNMYRSHSC 100
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA KVFEKMP KD++AWNS+LDA+AS QMD A+K+ + MPLKD++SFNIMISGY+ I
Sbjct: 101 VADACKVFEKMPVKDVVAWNSILDAYASTDQMDDALKVFNSMPLKDLSSFNIMISGYSSI 160
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GK SAR IFD + KD+VSWNS+I AY +ME+A ++F++M KN+ITWNTMV G+L
Sbjct: 161 GKTLSARSIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKGFL 220
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++QLY EV+DLFDEMK N PDYLTVT VLSACA+ GSL+ G +H+YA DNGLAS+PH
Sbjct: 221 QNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPH 280
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TTALIDMYAKCGSI+Q L+VFYKSQVKD++CWNA+I GLALHG+GYAAL + +M +
Sbjct: 281 VTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNH 340
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ DDITFIGLLSACSH+GLVQEG +LF M+K+FG++ K+EHYGCMVDLL RAR LD A
Sbjct: 341 TRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRARHLDCA 400
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
++LI+ MPF+P E+ILGALLSAC++HQDLE+G+RV K+V ++ NYLSDGELMMF+NLYAS
Sbjct: 401 LQLIKTMPFKPGEAILGALLSACIVHQDLEVGERVVKLVSSRGNYLSDGELMMFSNLYAS 460
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
CGQWEEAN+WR MMNDTGIVKTAG SV+EVNG +HKFLAG
Sbjct: 461 CGQWEEANKWREMMNDTGIVKTAGFSVVEVNGKFHKFLAG 500
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 39/287 (13%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ ++ + ++ + + ++ D T +L A + S G +H
Sbjct: 18 WNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIGLALHGQTI 77
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI--------LGLALH 283
G +S+ TAL++MY + + +VF K VKDV WN+++ + AL
Sbjct: 78 KAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYASTDQMDDALK 137
Query: 284 GYGYAALKLLGEMN-------------------DSCVKADDITFIGLLSACSHAGLVQEG 324
+ LK L N D+ + D +++ ++SA ++
Sbjct: 138 VFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYIQGEDMERA 197
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLS 381
C+LF M +T + MV + +L ++L + M P + +LS
Sbjct: 198 CDLFREMPAKNIIT-----WNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLS 252
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCGQWEE 426
AC L+ G V + A N L+ + A ++YA CG ++
Sbjct: 253 ACAHSGSLKKGTEV--HIYAIDNGLASSPHVTTALIDMYAKCGSIQQ 297
>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/463 (67%), Positives = 383/463 (82%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+QELG HADNY+FP+LLKAAG + +S IG LHGQTIKTGFC H +VQTAL+ MYG+L C
Sbjct: 41 VQELGFHADNYTFPILLKAAGRICASKIGFALHGQTIKTGFCAHAFVQTALVNMYGNLHC 100
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I DAFKVFE MP KD+IAWNSMLDA+AS QMD+A L + MPLKD++SFNIMISGY+
Sbjct: 101 IGDAFKVFEIMPVKDLIAWNSMLDAYASNAQMDYASNLFNSMPLKDISSFNIMISGYSTR 160
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+ AR IFD + +D VSWNS+I AY AG+MEK +F++M VKN +TWNTM+TG L
Sbjct: 161 GEAMLARSIFDSMEVRDFVSWNSMISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCL 220
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+S+ + V+DLF+EMK N PDYLTVTSVLS C +LGSL TG +IH+YA DNGL S+PH
Sbjct: 221 QSEHFGMVLDLFEEMKTANYIPDYLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPH 280
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TTALIDMY+KCGSIEQ L VF KSQVKD++CWNA+I LALHG+GYAALK+ G+M +
Sbjct: 281 VTTALIDMYSKCGSIEQGLHVFCKSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNH 340
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
++ DDITFIG+++ACSH+GLVQEGC+LF M++DFG++ KLEHYGCMV+LLGR+ L A
Sbjct: 341 IQPDDITFIGIINACSHSGLVQEGCQLFVSMQEDFGISPKLEHYGCMVNLLGRSGHLALA 400
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+++IE MPFEP ESILGALLSAC+I+QDLE G+RV ++VC+K++YLSDGELMMF+NLYAS
Sbjct: 401 LQVIETMPFEPGESILGALLSACIIYQDLETGERVIELVCSKAHYLSDGELMMFSNLYAS 460
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIG 463
CG WEEANRWR MMN TGIVKTAG SVIEV+G + KFLAG +G
Sbjct: 461 CGNWEEANRWREMMNSTGIVKTAGYSVIEVSGRFQKFLAGEVG 503
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/462 (67%), Positives = 376/462 (81%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ +G ADN++FP+LLKAA LSS CIG LHGQ +KTGF GH +V TALL MY +
Sbjct: 45 MKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAMKTGFSGHCFVGTALLDMYSAFGA 104
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A KVFE+M KD++ WNSML A+ASCGQMD+AMKL D MPLKD+ SFNIMISGYA+I
Sbjct: 105 IDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKI 164
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GK +AR IFD++ AKD+VSWNS+ILA TN G+M A +F M KNVITWNTM++GYL
Sbjct: 165 GKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYL 224
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+QLY E VDLFDEMKAGN + D+LTVT VLSACA+LG L G +HVYA D+ LAS+PH
Sbjct: 225 HAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPH 284
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
T+LIDMYAKCG+I++SLEVFYKSQVKD++CWNA+I GLALHGYG+AA+KLL +M D+
Sbjct: 285 VATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNG 344
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V+ D+ITFIGLLSACSH LVQEGC LF MEK+FG+ KLEHYGCMVDLLGRA LD A
Sbjct: 345 VRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPA 404
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+LI+AMPFEP ESILGALL ACVIHQDLE G++V ++ +K++++SDGE MMF NLYAS
Sbjct: 405 FQLIKAMPFEPGESILGALLGACVIHQDLETGEKVINLITSKAHHVSDGEFMMFVNLYAS 464
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
CGQW+EANRWR MN++GI KTAG S IEV+G +++FLAG I
Sbjct: 465 CGQWKEANRWRERMNESGIAKTAGGSTIEVDGKFYRFLAGDI 506
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 35/242 (14%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ + + + + EMK D T +L A ++L S G +H A
Sbjct: 22 WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G + + TAL+DMY+ G+I+ + +VF + VKDV WN+M+ A G A+K
Sbjct: 82 KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141
Query: 292 LLGEMN---------------------------DSCVKADDITFIGLLSACSHAGLVQEG 324
L M D D +++ ++ AC++ G +
Sbjct: 142 LFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNA 201
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLS 381
LF M K +T + M+ A+L A++L + M E + +LS
Sbjct: 202 RNLFDVMPKKNVIT-----WNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLS 256
Query: 382 AC 383
AC
Sbjct: 257 AC 258
>gi|147784564|emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
Length = 1302
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 295/462 (63%), Positives = 358/462 (77%), Gaps = 19/462 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ +G HADN++FP+LLKAA LSS CIG LHGQ +KTGF GH +V TALL MY +
Sbjct: 849 MKRVGFHADNFTFPVLLKAASSLSSCCIGFALHGQAMKTGFSGHCFVGTALLDMYXAFGA 908
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A KVFE+M KD++ WNSML A+AS GQMD+AMKL D MPLKD+ SFNIMISGYA+I
Sbjct: 909 IDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMKLFDNMPLKDLASFNIMISGYAKI 968
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+ +AR IFD++ AKD+VSWNS+ILA TN G+M A +F M KN
Sbjct: 969 GRKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNA----------- 1017
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
VDLFDEMKAGN + D+LTV VLSACA+LG L G +HVYA D+ LAS+PH
Sbjct: 1018 --------VDLFDEMKAGNHEADHLTVALVLSACAHLGWLGKGTEMHVYAQDHRLASSPH 1069
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
T+LIDMYAKCG+I++SLEVFYKSQVKD++CWNA+I GLALHGYG+AA+KLL +M D+
Sbjct: 1070 VATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNG 1129
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
++ D+ITFIGLLSACSH LVQEGC LF MEK+FG+ KLEHYGCMVDLLGRA LD A
Sbjct: 1130 IRPDEITFIGLLSACSHGSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPA 1189
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+LI+AMPFEP ESILGALL ACVIHQDLE G++V ++ +K++++SDGE MMF NLYAS
Sbjct: 1190 FQLIKAMPFEPGESILGALLGACVIHQDLETGEKVIBLITSKAHHVSDGEFMMFVNLYAS 1249
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
CGQW+EANRWR MN++GI KTAG S IEV+G +++FLAG I
Sbjct: 1250 CGQWKEANRWRERMNESGIAKTAGGSTIEVDGKFYRFLAGDI 1291
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ + + + + EMK D T +L A ++L S G +H A
Sbjct: 826 WNRVIKRRVSQGNPDQAILAYVEMKRVGFHADNFTFPVLLKAASSLSSCCIGFALHGQAM 885
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G + + TAL+DMY G+I+ + +VF + VKDV WN+M+ A G A+K
Sbjct: 886 KTGFSGHCFVGTALLDMYXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMK 945
Query: 292 LLGEM 296
L M
Sbjct: 946 LFDNM 950
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/464 (40%), Positives = 292/464 (62%), Gaps = 1/464 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ D+ ++P ++KA S + GL++H +K+GF Y+ ++L+ +Y + +
Sbjct: 186 MLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKD 245
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A ++F +D+++WN+M+D + +M HA + D M +DV S+N MI+GYA +
Sbjct: 246 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIV 305
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GKI A+ +FD++P +++VSWNS++ + G +E A +F +M ++V++WN+M+ Y
Sbjct: 306 GKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYA 365
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ E + LFD+M+A VKP TV S+LSACA+LG+L+ G +H Y DN + N
Sbjct: 366 QCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI 425
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TAL+DMYAKCG I + +VF + KDV WN +I G+A+HG A +L EM ++
Sbjct: 426 VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAG 485
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V+ +DITF+ +LSACSHAG+V EG +L M +G+ K+EHYGC++DLL RA L+ A
Sbjct: 486 VEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEA 545
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+ELI MP EP S LGALL C IH + E+G+ V K + S G ++ +N+YA+
Sbjct: 546 MELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHS-GRYILLSNIYAA 604
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+W++A + RN+M GI K G SVIE+ G H+F+AG H
Sbjct: 605 AKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 648
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 125/306 (40%), Gaps = 49/306 (16%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
+N+++ S+ +E + L+ M +KPD++T V+ AC G +H +
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 222
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH-GYGYAAL 290
+G + + ++LI +YA + + ++F +DV WNAMI G H G+A +
Sbjct: 223 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 282
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM------------------- 331
D V D I++ +++ + G + E LF M
Sbjct: 283 VF-----DRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCG 337
Query: 332 --EKDFGV-----TRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLS 381
E FG+ R + + M+ + + A+ L + M +PTE+ + +LLS
Sbjct: 338 NVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLS 397
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM-------FANLYASCGQWEEANRWRNMM 434
AC L+ G + Y++D + + ++YA CG+ A + N M
Sbjct: 398 ACAHLGALDKGLHL-------HTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM 450
Query: 435 NDTGIV 440
++
Sbjct: 451 ESKDVL 456
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/453 (40%), Positives = 288/453 (63%), Gaps = 1/453 (0%)
Query: 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM 71
++P ++KA S + GL++H +K+GF Y+ +L+ +Y + + + A ++F
Sbjct: 2 TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61
Query: 72 PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD 131
++D+++WN+M+D + G+M H + D M +DV S+N +I+GYA +GKI A+ +FD
Sbjct: 62 SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFD 121
Query: 132 KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
++P +++VSWNS++ + G +E+A +F +M ++V++WN+M+ Y + E + L
Sbjct: 122 EMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 181
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
FD+M+A VKP TV S+LSACA+LG+L+ G +H Y DN + N TAL+DMYAK
Sbjct: 182 FDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK 241
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
CG I + +VF + KDV WN +I G+A+HG+ A +L EM ++ V+ +DITF+ +
Sbjct: 242 CGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAM 301
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP 371
LSACSHAG+V EG +L M +G+ K+EHY C++DLL RA LL+ A+ELI MP EP
Sbjct: 302 LSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEP 361
Query: 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWR 431
S LGALL C IH + E+G+ V K + S G ++ +N+YA+ +W++A + R
Sbjct: 362 NPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHS-GRYILLSNIYAAAKKWDDARKVR 420
Query: 432 NMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+M GI K G SVIE+ G H+F+AG H
Sbjct: 421 NLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 453
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 49/273 (17%)
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+T V+ AC G +H + +G + + +LI +YA + + ++F
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60
Query: 265 SQVKDVFCWNAMILGLALHGY------------------------GYAALKLLGEMN--- 297
+DV WNAMI G G GYA + + E
Sbjct: 61 CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
D + + +++ +LS G V+E LFS M R + + M+ +
Sbjct: 121 DEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMP-----CRDVVSWNSMLACYAQCGKP 175
Query: 358 DRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM- 413
+ A+ L + M +PTE+ + +LLSAC L+ G + Y++D + +
Sbjct: 176 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHL-------HTYINDNRIEVN 228
Query: 414 ------FANLYASCGQWEEANRWRNMMNDTGIV 440
++YA CG+ A + N M ++
Sbjct: 229 SIVGTALVDMYAKCGKISLATQVFNAMESKDVL 261
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/468 (40%), Positives = 295/468 (63%), Gaps = 6/468 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ DNY++P +LKA G + G ++ G+ +K GF G V+V L+ MY RC
Sbjct: 101 MRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMY--CRC 158
Query: 61 IDD--AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
+ A VF+ EKD+++WNSML + CG+M++A + D MP +DV S++IMI GY
Sbjct: 159 GETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYG 218
Query: 119 R-IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ +G+++ AR FD +P +D+VSWNS+I Y GEME A E+F KML KNVI+W+ M+
Sbjct: 219 KKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMID 278
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY + + E ++LF +M +KPD ++V +SAC+ LG+L+ G IH+Y N +
Sbjct: 279 GYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLL 338
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ TAL+DMY KCGS +++ +F ++V WN MI+GL ++G+G AL+ +M
Sbjct: 339 DIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQME 398
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ DD+ F+G+L ACSHA LV EG +F++M+ + + KLEHYGC+VDLLGRA L
Sbjct: 399 MERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQL 458
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
D+ +I++MP +P ++ G+LL AC IHQ++ + + V + + A+ G ++ +N+
Sbjct: 459 DQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERL-AELKADDSGVYVLMSNI 517
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
YA G WE R R +M + + K G SVIEV+G+ +F++G H+
Sbjct: 518 YADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKSHI 565
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 125/318 (39%), Gaps = 48/318 (15%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F ++ N NTMV Y S + + EM+ + D T VL AC +
Sbjct: 66 VFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCG 125
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
L G + A G + LI MY +CG + VF KD+ WN+M+ G
Sbjct: 126 LLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGG 185
Query: 280 --------------------------LALHGYGYAALKLLGEMN------DSCVKADDIT 307
+ + GYG K +GE+N DS D ++
Sbjct: 186 YVWCGEMENAQNMFDEMPERDVVSWSIMIDGYG----KKMGEVNRARVFFDSMPTRDLVS 241
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ ++ + G ++ E+F +M + + + + M+D + R A+ L M
Sbjct: 242 WNSMIDGYAKVGEMEVAREIFDKM-----LQKNVISWSIMIDGYAQHRDSKEALNLFRQM 296
Query: 368 ---PFEPTE-SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM-FANLYASCG 422
+P S++GA +SAC L+ G R + ++ L D + ++Y CG
Sbjct: 297 LCQGIKPDRVSVVGA-VSACSQLGALDQG-RWIHLYMKRNRMLLDIVVQTALVDMYLKCG 354
Query: 423 QWEEANRWRNMMNDTGIV 440
+EA R N M + +V
Sbjct: 355 SRDEARRIFNSMPERNVV 372
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/468 (40%), Positives = 295/468 (63%), Gaps = 6/468 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G+ DNY++P +LKA G + G ++ G+ +K GF G V+V L+ MY RC
Sbjct: 101 MRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMY--CRC 158
Query: 61 IDD--AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
+ A VF+ EKD+++WNSML + CG+M++A + D MP +DV S++IMI GY
Sbjct: 159 GETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYG 218
Query: 119 R-IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ +G+++ AR FD +P +D+VSWNS+I Y GEME A E+F KML KNVI+W+ M+
Sbjct: 219 KKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMID 278
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY + E ++LF +M +KPD ++V +SAC+ LG+L+ G IH+Y N +
Sbjct: 279 GYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLL 338
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ TAL+DMY KCGS +++ +F ++V WN MI+GL ++G+G AL+ +M
Sbjct: 339 DIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQME 398
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ DD+ F+G+L ACSHA LV EG +F++M+ + + KLEHYGC+VDLLGRA L
Sbjct: 399 MERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQL 458
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
D+ +I++MP +P ++ G+LL AC IHQ++ + + V + + A+ G ++ +N+
Sbjct: 459 DQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERL-AELKADDSGVYVLMSNI 517
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
YA G WE R R +M + + K G SVIEV+G+ +F++G H+
Sbjct: 518 YADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKSHI 565
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 123/318 (38%), Gaps = 48/318 (15%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F ++ N NTMV Y S + + EM+ + D T VL AC +
Sbjct: 66 VFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCG 125
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
L G + A G + LI MY +CG + VF KD+ WN+M+ G
Sbjct: 126 LLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGG 185
Query: 280 --------------------------LALHGYGYAALKLLGEMN------DSCVKADDIT 307
+ + GYG K +GE+N DS D ++
Sbjct: 186 YVWCGEMENAQNMFDEMPERDVVSWSIMIDGYG----KKMGEVNRARVFFDSMPTRDLVS 241
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ ++ + G ++ E+F +M + + + + M+D R A+ L M
Sbjct: 242 WNSMIDGYAKVGEMEVAREIFBKM-----LQKNVISWSIMIDGYAXHRDSKEALNLFRQM 296
Query: 368 ---PFEPTE-SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM-FANLYASCG 422
+P S++GA +SAC L+ G R + ++ L D + ++Y CG
Sbjct: 297 LCQGIKPDRVSVVGA-VSACSQLGALDQG-RWIHLYMKRNRMLLDIVVQTALVDMYLKCG 354
Query: 423 QWEEANRWRNMMNDTGIV 440
+EA N M + +V
Sbjct: 355 SXDEARXIFNSMPERNVV 372
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/461 (40%), Positives = 275/461 (59%), Gaps = 7/461 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ GV ADN+++P LLKA + M+H Q K GFC ++V +L+ Y +C
Sbjct: 106 MQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSY--FKC 163
Query: 61 ----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+ A KVFE M E+D ++WNSM+ G++ A +L D MP +D S+N ++ G
Sbjct: 164 GLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDG 223
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y + G++++A +F+K+PA++VVSW++++L Y+ AG+M+ A +F KM VKN++ W M+
Sbjct: 224 YVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMI 283
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+GY L + ++L+++M+ +K D TV S+LSACA G L G R+H
Sbjct: 284 SGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFK 343
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ + ALIDMYAKCGS+E +L +F+ KDV WNA+I GLA+HG+G AL+L M
Sbjct: 344 CSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRM 403
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
D +TF+G+L AC+HAG V EG F ME+D+GV ++EHYGCMVDLLGR
Sbjct: 404 KGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGR 463
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L A L+ +MP EP I G LL AC +H + + V + KS G L M +N
Sbjct: 464 LKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRL-VKSELSDSGNLSMLSN 522
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+YA+ G W+ R M T I K +G S IEV+ H+F
Sbjct: 523 IYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEF 563
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 145/330 (43%), Gaps = 52/330 (15%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF--------- 130
++ AF+ C QM A+ + + + DV +N +I + R + A +F
Sbjct: 53 QKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVC 112
Query: 131 --------------DKVPAK----------------DVVSWNSLILAYTNAG--EMEKAG 158
KV + D+ NSLI +Y G + A
Sbjct: 113 ADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAAR 172
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
++F+ M ++ ++WN+M+ G ++ E LFDEM + D ++ ++L G
Sbjct: 173 KVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMP----ERDTVSWNTILDGYVKAG 228
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
E A ++ + A N + + ++ Y+K G ++ + +F K VK++ W MI
Sbjct: 229 --EMNAAFELF--EKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMIS 284
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-FGV 337
G A G A+ L +M ++ +K DD T I +LSAC+ +GL+ G + + +E+ F
Sbjct: 285 GYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKC 344
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ + + ++D+ + L+ A+ + M
Sbjct: 345 STPVSN--ALIDMYAKCGSLENALSIFHGM 372
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 125/322 (38%), Gaps = 45/322 (13%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
LI A++ +M A +F ++ +V+ +NT++ ++R+ + +F EM+ V
Sbjct: 53 QKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVC 112
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG--SIEQSL 259
D T +L AC+ + IH G + +LID Y KCG + +
Sbjct: 113 ADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAAR 172
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF +D WN+MI GL G A +L EM + D +++ +L AG
Sbjct: 173 KVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPER----DTVSWNTILDGYVKAG 228
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP-------- 371
+ ELF +M R + + MV +A +D A L + MP +
Sbjct: 229 EMNAAFELFEKMP-----ARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMI 283
Query: 372 --------------------------TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
+ + ++LSAC + L +G RV +
Sbjct: 284 SGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFK 343
Query: 406 LSDGELMMFANLYASCGQWEEA 427
S ++YA CG E A
Sbjct: 344 CSTPVSNALIDMYAKCGSLENA 365
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 13/208 (6%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
S L C++L ++ +IH L LI ++ C + ++ VF + Q
Sbjct: 22 SDLHRCSSLNQVK---QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDP 78
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
DV +N +I + A + EM DS V AD+ T+ LL ACS V+ +
Sbjct: 79 DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIH 138
Query: 329 SRMEK-----DFGVTRKL--EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+++EK D V L ++ C +D + AR + E++ S++G L+
Sbjct: 139 AQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAAR---KVFEVMAERDTVSWNSMIGGLVK 195
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
+ + + D + + N + DG
Sbjct: 196 VGELGEARRLFDEMPERDTVSWNTILDG 223
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 184/459 (40%), Positives = 285/459 (62%), Gaps = 4/459 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ + V + ++FPL+LK+ + + G +H + IK G G+ +V T L+ +Y R
Sbjct: 114 MKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRA 173
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A+K+F M E++I+AW SM+ + C ++ A +L DL P +DV +NIM+SGY I
Sbjct: 174 IGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEI 233
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + +AR +FD +P +D +SWN+++ Y N G++E ++F++M +NV +WN ++ GY
Sbjct: 234 GDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYA 293
Query: 181 RSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ + EV+ F M G V P+ T+ +VLSACA LG+L+ G +HVYA G +
Sbjct: 294 HNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSI 353
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ ALIDMY+KCG IE ++EVF +KD+ WN+MI GLA HG G AL L +M +
Sbjct: 354 YVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKIN 413
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K D ITFIG+L +C+H GLV+EG F+ M ++ + ++EHYGCMVDL GRA LLDR
Sbjct: 414 GEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDR 473
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLY 418
AIE ++ MP E I ALL AC I++++++ + + K++ + + ++ +N+Y
Sbjct: 474 AIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPK--NPANYVLLSNIY 531
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
G+W++ R + +M DTG K G S+IEVN S +F
Sbjct: 532 GDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEF 570
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 52/324 (16%)
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+++ ++ +M A +F V WN + GY + Y EVV LF +MK+ +V+P
Sbjct: 62 NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 121
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK----------- 251
+ T VL +CA +G+ G IH GL N T LID+Y+
Sbjct: 122 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 181
Query: 252 --------------------CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
C + + +F + +DV WN M+ G G AA K
Sbjct: 182 VGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARK 241
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDF----GVTRKLEHYGC 346
L D+ D +++ +L+ ++ G V+ +LF M E++ G+ H GC
Sbjct: 242 LF----DTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGC 297
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV---AKMVCAKS 403
++L R R LI+ + P ++ L +LSAC L++G V A + K
Sbjct: 298 FFEVL---RCFKRM--LIDGLVV-PNDATLVTVLSACARLGALDLGKWVHVYAATIGFKG 351
Query: 404 NYLSDGELMMFANLYASCGQWEEA 427
+ L+ ++Y+ CG E A
Sbjct: 352 SIYVGNALI---DMYSKCGLIENA 372
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 131/330 (39%), Gaps = 55/330 (16%)
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
+++ ++ QM HA L D P V +N + GY ++F K+ + DV
Sbjct: 62 NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 121
Query: 141 ---------------------------------------WNSLILAYTNAGEMEKAGEMF 161
+LI Y+ + A ++F
Sbjct: 122 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 181
Query: 162 KKMLVKNVITWNTMVTGYL---RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
ML +N++ W +M++GY+ R L + DL E D + ++S +G
Sbjct: 182 VGMLERNIVAWTSMISGYILCNRVALARRLFDLAPER-------DVVLWNIMVSGYIEIG 234
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
++ ++ D + + +++ YA G +E ++F + ++VF WN +I
Sbjct: 235 DMKAARKLF----DTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIG 290
Query: 279 GLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
G A +G + L+ M D V +D T + +LSAC+ G + G + G
Sbjct: 291 GYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLG-KWVHVYAATIGF 349
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ ++D+ + L++ A+E+ E+M
Sbjct: 350 KGSIYVGNALIDMYSKCGLIENAMEVFESM 379
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 184/459 (40%), Positives = 285/459 (62%), Gaps = 4/459 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ + V + ++FPL+LK+ + + G +H + IK G G+ +V T L+ +Y R
Sbjct: 156 MKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRA 215
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A+K+F M E++I+AW SM+ + C ++ A +L DL P +DV +NIM+SGY I
Sbjct: 216 IGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEI 275
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + +AR +FD +P +D +SWN+++ Y N G++E ++F++M +NV +WN ++ GY
Sbjct: 276 GDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYA 335
Query: 181 RSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ + EV+ F M G V P+ T+ +VLSACA LG+L+ G +HVYA G +
Sbjct: 336 HNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSI 395
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ ALIDMY+KCG IE ++EVF +KD+ WN+MI GLA HG G AL L +M +
Sbjct: 396 YVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKIN 455
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K D ITFIG+L +C+H GLV+EG F+ M ++ + ++EHYGCMVDL GRA LLDR
Sbjct: 456 GEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDR 515
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLY 418
AIE ++ MP E I ALL AC I++++++ + + K++ + + ++ +N+Y
Sbjct: 516 AIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPK--NPANYVLLSNIY 573
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
G+W++ R + +M DTG K G S+IEVN S +F
Sbjct: 574 GDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEF 612
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 52/324 (16%)
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+++ ++ +M A +F V WN + GY + Y EVV LF +MK+ +V+P
Sbjct: 104 NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 163
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK----------- 251
+ T VL +CA +G+ G IH GL N T LID+Y+
Sbjct: 164 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 223
Query: 252 --------------------CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
C + + +F + +DV WN M+ G G AA K
Sbjct: 224 VGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARK 283
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDF----GVTRKLEHYGC 346
L D+ D +++ +L+ ++ G V+ +LF M E++ G+ H GC
Sbjct: 284 LF----DTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGC 339
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV---AKMVCAKS 403
++L R R LI+ + P ++ L +LSAC L++G V A + K
Sbjct: 340 FFEVL---RCFKRM--LIDGLVV-PNDATLVTVLSACARLGALDLGKWVHVYAATIGFKG 393
Query: 404 NYLSDGELMMFANLYASCGQWEEA 427
+ L+ ++Y+ CG E A
Sbjct: 394 SIYVGNALI---DMYSKCGLIENA 414
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 131/330 (39%), Gaps = 55/330 (16%)
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
+++ ++ QM HA L D P V +N + GY ++F K+ + DV
Sbjct: 104 NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 163
Query: 141 ---------------------------------------WNSLILAYTNAGEMEKAGEMF 161
+LI Y+ + A ++F
Sbjct: 164 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 223
Query: 162 KKMLVKNVITWNTMVTGYL---RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
ML +N++ W +M++GY+ R L + DL E D + ++S +G
Sbjct: 224 VGMLERNIVAWTSMISGYILCNRVALARRLFDLAPER-------DVVLWNIMVSGYIEIG 276
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
++ ++ D + + +++ YA G +E ++F + ++VF WN +I
Sbjct: 277 DMKAARKLF----DTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIG 332
Query: 279 GLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
G A +G + L+ M D V +D T + +LSAC+ G + G + G
Sbjct: 333 GYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLG-KWVHVYAATIGF 391
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ ++D+ + L++ A+E+ E+M
Sbjct: 392 KGSIYVGNALIDMYSKCGLIENAMEVFESM 421
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/494 (39%), Positives = 286/494 (57%), Gaps = 36/494 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L G+ +HG KTG +Y+Q L+ +Y C
Sbjct: 112 MLETGVSVDKFSLSLVLKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGC 171
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFNIMISGYA 118
+ A +VF++MP +D +++NSM+D + CG ++ A L DLMP K++ S+N MISGYA
Sbjct: 172 LGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYA 231
Query: 119 -RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW----- 172
R ++ A+ +FD++P KD++SWNSLI Y G ME A +F KM ++V+TW
Sbjct: 232 QRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVD 291
Query: 173 --------------------------NTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
N+M+TGY++++ + E + +F++M K ++ PD
Sbjct: 292 GYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDET 351
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L IH+Y DN ALID Y+KCGSI++S+ VF +
Sbjct: 352 TLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEI 411
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L ++ +K DDITFIG+L+ACSH+GLV+EG
Sbjct: 412 ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGL 471
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + KL+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 472 LCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSN 531
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + + Y + ++ +N+YAS G W+E R R M + + K G
Sbjct: 532 HKEFETGELVAKHLFLQGGY-NPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGC 590
Query: 446 SVIEVNGSYHKFLA 459
S IE++G+ H+F
Sbjct: 591 SWIELDGNVHEFFV 604
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 43/233 (18%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ + + + LF M V D +++ VL AC+ LG ++ G +IH +
Sbjct: 89 WNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIHGFLR 148
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVF----------YKSQV-------------- 267
G+ S+ + LI +Y KCG + + +VF Y S +
Sbjct: 149 KTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARG 208
Query: 268 ---------KDVFCWNAMILGLALHGYGY-AALKLLGEMNDSCVKADDITFIGLLSACSH 317
K++ WN MI G A G A KL EM + D I++ L+
Sbjct: 209 LFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEK----DLISWNSLIDGYVK 264
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
G +++ LF++M K R + + MVD + + +A L + MP
Sbjct: 265 HGRMEDAKSLFNKMPK-----RDVVTWATMVDGYAKLGFVHQAKSLFDRMPLR 312
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS---IEQSLEVFYKSQ 266
+L +C N E +IH NG NP+ TT ++ +A E + VF++
Sbjct: 20 LLGSCKNS---EDVNKIHARLITNGFIKNPNLTTRIVLDFADSRRSYLAEFARFVFHEYH 76
Query: 267 V------KDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGLLSACSH 317
V +D F WNA+I H +G AL L M ++ V D + +L ACS
Sbjct: 77 VCSNGDFEDPFLWNAVIKS---HSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSR 133
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G V+EG ++ + K G+ L C++ L + L A ++ + MP
Sbjct: 134 LGFVKEGMQIHGFLRKT-GIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMP 183
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 360 bits (925), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 187/507 (36%), Positives = 290/507 (57%), Gaps = 47/507 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ E ++Y+FP ++KAA +SS G +HG +K F +++ +L+ Y SL
Sbjct: 122 LHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGD 181
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----------- 109
+D A+ VF K+ EKDI++WNSM+ F G + A++L M +++
Sbjct: 182 LDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSA 241
Query: 110 ----------------------------FNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
N M+ Y + G + AR +FDK+ KD+VSW
Sbjct: 242 CAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSW 301
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG-NV 200
++I Y G+ + A +F M +++ WN +++ Y ++ E + +F E++ N
Sbjct: 302 TTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNT 361
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KP+ +T+ S L+ACA LG+++ G IHVY G+ N H TT+LIDMY+KCG +E++LE
Sbjct: 362 KPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALE 421
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VFY + +DVF W+AMI GLA+HG+G AA+ L +M ++ VK + +TF LL ACSH+GL
Sbjct: 422 VFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGL 481
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V EG F++M +GV +HY CMVD+LGRA L+ A+ELIE MP P+ S+ GALL
Sbjct: 482 VDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALL 541
Query: 381 SACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
AC I+ ++E+ A+M C++ ++ + G ++ +N+YA G+W+ +R R M +
Sbjct: 542 GACRIYGNVEL----AEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVS 597
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S IEVNG H+FL G H
Sbjct: 598 GLEKEPGCSSIEVNGIIHEFLVGDNSH 624
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 155/318 (48%), Gaps = 27/318 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
LH ++TG T L S +D A KVF+++P ++ WN+++ AFAS
Sbjct: 49 LHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASS 108
Query: 90 G----------QMDHAMKLID---LMP--LKDVTSFNIMISGYARIGKIHSARYIFDKVP 134
QM H + P +K T + +++G A G + A +
Sbjct: 109 PKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASF------ 162
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
D+ NSLI Y++ G+++ A +F K++ K++++WN+M++G+++ E + LF
Sbjct: 163 GSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKR 222
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
MK N +P+ +T+ VLSACA LE G Y NG+ N + A++DMY KCGS
Sbjct: 223 MKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGS 282
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+E + +F K + KD+ W MI G A G AA ++ D + D + L+S+
Sbjct: 283 LEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVF----DVMPREDITAWNALISS 338
Query: 315 CSHAGLVQEGCELFSRME 332
G +E +F ++
Sbjct: 339 YQQNGKPKEALAIFRELQ 356
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 182/470 (38%), Positives = 273/470 (58%), Gaps = 9/470 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ ADN+++P LLKA S + M+H K G +YV AL+ Y RC
Sbjct: 108 MQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYS--RC 165
Query: 61 ----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+ DA K+FEKM E+D ++WNSML G++ A +L D MP +D+ S+N M+ G
Sbjct: 166 GGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDG 225
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--KNVITWNT 174
YAR ++ A +F+K+P ++ VSW+++++ Y+ AG+ME A MF KM + KNV+TW
Sbjct: 226 YARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTI 285
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ GY L E L D+M A +K D V S+L+AC G L G RIH +
Sbjct: 286 IIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSN 345
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L SN + AL+DMYAKCG+++++ +VF KD+ WN M+ GL +HG+G A++L
Sbjct: 346 LGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFS 405
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
M ++ D +TFI +L +C+HAGL+ EG + F MEK + + ++EHYGC+VDLLGR
Sbjct: 406 RMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRV 465
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
L AI++++ MP EP I GALL AC +H +++I V + K + G +
Sbjct: 466 GRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNL-VKLDPCDPGNYSLL 524
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA+ WE R+ M G+ K +G+S +E+ H+F H
Sbjct: 525 SNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSH 574
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 108/235 (45%), Gaps = 12/235 (5%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI A + + A +F ++ NV N+++ + ++ + +F EM+ + D
Sbjct: 57 LISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFAD 116
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG--SIEQSLEV 261
T +L AC+ L +H + GL+S+ + ALID Y++CG + ++++
Sbjct: 117 NFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKL 176
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K +D WN+M+ GL G A +L EM + D I++ +L + +
Sbjct: 177 FEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMP----QRDLISWNTMLDGYARCREM 232
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
+ ELF +M + R + MV +A ++ A + + MP P ++++
Sbjct: 233 SKAFELFEKMPE-----RNTVSWSTMVMGYSKAGDMEMARVMFDKMPL-PAKNVV 281
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 17/222 (7%)
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
L CANL ++ ++H L + H LI + C ++ VF + Q +V
Sbjct: 26 LPKCANLNQVK---QLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
N++I A + Y A + EM + AD+ T+ LL ACS + + +
Sbjct: 83 HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 142
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLL--DRAIELIEAMPFEPT---ESILGALLSACVI 385
+EK G++ + ++D R L A++L E M T S+LG L+ A +
Sbjct: 143 IEK-LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEL 201
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
+ D + + N + DG YA C + +A
Sbjct: 202 RDARRLFDEMPQRDLISWNTMLDG--------YARCREMSKA 235
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 179/464 (38%), Positives = 273/464 (58%), Gaps = 5/464 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D Y+FP +LKA G GL++H + ++ G ++ AL+ Y +
Sbjct: 104 MRRCGVRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILD 163
Query: 61 IDDAFKVFEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
I KVF++ +D+++WNSM+ + CG+M A ++ D MP KD S+ +I GY
Sbjct: 164 IRSGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYG 223
Query: 119 RIGK--IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ G + AR +FD++P +D+V WNS+I Y G M++A +F++M +NVI+W+ ++
Sbjct: 224 KQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVI 283
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G++ E ++ F M ++PD + +SACA LG+LE G +H Y L
Sbjct: 284 DGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLL 343
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
S+ TALIDMY KCG ++ ++ +F + V WN MI+GL HG+G A+ L M
Sbjct: 344 SDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRM 403
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
V DD++ +G+L+AC+HAGLV EG E+F RM+KDFG+ K+EHYG +VDLLGRA
Sbjct: 404 EAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGR 463
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
LD+A IE MP EPT + G+LL+AC H +E+ + + + A G ++ +N
Sbjct: 464 LDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERL-ADLGADDSGVYVLLSN 522
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+YA G W + R R +M+D G+ K G SVIEV+G H+F+ G
Sbjct: 523 IYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFVNG 566
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 14/206 (6%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
++ WNT + + ++ ++ F M+ V+PD T +VL AC G +
Sbjct: 77 RDPFAWNTAIRLHAPARPRAALL-YFARMRRCGVRPDAYTFPAVLKACGCAPGCRAGLLV 135
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ--VKDVFCWNAMILGLALHG 284
H A GLA++ ALI Y + I +VF ++ +D+ WN+M+ G
Sbjct: 136 HAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYV--- 192
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG--LVQEGCELFSRMEKDFGVTRKLE 342
G + L EM D + D ++ L+ G V ELF +M + R L
Sbjct: 193 -GCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPE-----RDLV 246
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMP 368
+ M+D R +D A L E MP
Sbjct: 247 CWNSMIDGYARHGRMDEARSLFEEMP 272
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 186/457 (40%), Positives = 282/457 (61%), Gaps = 8/457 (1%)
Query: 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY---GSLRCIDDAFKVF 68
SF L+L++ I + +G H Q +K GF + +QT LL Y G L+C A +VF
Sbjct: 12 SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKC---AKRVF 68
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
MP +D++A N+M+ A + G ++ A L D M ++ S+N MI+ Y ++G I+SAR
Sbjct: 69 MGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARL 128
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVITWNTMVTGYLRSQLYIE 187
+FD P KDVVSWN++I Y + ++ A E+F M +N +TWNTM++ Y++ +
Sbjct: 129 MFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGT 188
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ +F +M++ NVKP +T+ S+LSACA+LG+L+ G IH Y L + ALID
Sbjct: 189 AISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALID 248
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY KCG++E +++VF+ K++FCWN++I+GL ++G G A+ M +K D +T
Sbjct: 249 MYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 308
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
F+G+LS CSH+GL+ G FS M +G+ +EHYGCMVDLLGRA L A+ELI AM
Sbjct: 309 FVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM 368
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P +P +LG+LL AC IH+D ++G++V + + + + G + +NLYAS +W++
Sbjct: 369 PMKPNSMVLGSLLRACQIHKDTKLGEQVTQQL-LELDPCDGGNYVFLSNLYASLSRWDDV 427
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N R +M G+ KT G S IEVN H+F+AG H
Sbjct: 428 NTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSH 464
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 100/263 (38%), Gaps = 34/263 (12%)
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M +V P + + +L +CA G + G H G + T L+D YAK G
Sbjct: 1 MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND--SC---------VKA 303
++ + VF +DV NAMI L+ HGY A L M + SC K
Sbjct: 61 LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKL 120
Query: 304 DDITFIGLLSAC-------SHAGLVQEGC---------ELFSRMEKDFGVTRKLEHYGCM 347
DI L+ C S ++ C ELF M G R + M
Sbjct: 121 GDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLM----GSARNSVTWNTM 176
Query: 348 VDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
+ + AI + + M E PTE + +LLSAC L++G+ + + K
Sbjct: 177 ISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRL 236
Query: 405 YLSDGELMMFANLYASCGQWEEA 427
+ ++Y CG E A
Sbjct: 237 KIDVVLGNALIDMYCKCGALEAA 259
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 179/459 (38%), Positives = 275/459 (59%), Gaps = 7/459 (1%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLM--LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D++++ L+KA LS++ + + +H +K G +V AL+ Y DA K
Sbjct: 435 DSFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 491
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF++MPE+D+++WN+ + A G++ KL D MP KD S+N ++ GY + G++ +A
Sbjct: 492 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 551
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
+F ++P ++VVSW++++ Y G++E A +F KM KN++TW MV+ + L
Sbjct: 552 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 611
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E LF +MK +V+ D V S+L+ACA GSL G RIH Y L + H ALI
Sbjct: 612 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 671
Query: 247 DMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
DM+ KCG + ++ VF V KD WN++I G A+HG+G AL+L +M D
Sbjct: 672 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 731
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+T I +LSAC+H G V EG FS ME+D+G+ ++EHYGCM+DLLGR L+ A++LI+
Sbjct: 732 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 791
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
+MP+EP E I G+LLSAC +H+++E + +A +K + G + +N+YA GQW
Sbjct: 792 SMPWEPNEVIWGSLLSACRLHKNVEYAE-IAVNELSKLQPSNAGNYAVLSNIYAEAGQWS 850
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ + R M TG KTAGSS +E+N ++H+F G H
Sbjct: 851 DMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKH 889
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 37/259 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V D + +L A S +G +H K +V AL+ M+ C
Sbjct: 620 MKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC 679
Query: 61 IDDAFKVFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
++ A VF+ + +KD ++WNS++ FA G D A++L M + FN
Sbjct: 680 VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQ---GFN-------- 728
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNT 174
D V+ +++ A T+ G +++ F M ++ + +
Sbjct: 729 ----------------PDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGC 772
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ R L E VDL M +P+ + S+LSAC ++E A I V
Sbjct: 773 MIDLLGRGGLIKEAVDLIKSMP---WEPNEVIWGSLLSACRLHKNVEY-AEIAVNELSKL 828
Query: 235 LASNPHATTALIDMYAKCG 253
SN L ++YA+ G
Sbjct: 829 QPSNAGNYAVLSNIYAEAG 847
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 179/459 (38%), Positives = 275/459 (59%), Gaps = 7/459 (1%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLM--LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D++++ L+KA LS++ + + +H +K G +V AL+ Y DA K
Sbjct: 128 DSFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 184
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF++MPE+D+++WN+ + A G++ KL D MP KD S+N ++ GY + G++ +A
Sbjct: 185 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 244
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
+F ++P ++VVSW++++ Y G++E A +F KM KN++TW MV+ + L
Sbjct: 245 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 304
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E LF +MK +V+ D V S+L+ACA GSL G RIH Y L + H ALI
Sbjct: 305 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 364
Query: 247 DMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
DM+ KCG + ++ VF V KD WN++I G A+HG+G AL+L +M D
Sbjct: 365 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 424
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+T I +LSAC+H G V EG FS ME+D+G+ ++EHYGCM+DLLGR L+ A++LI+
Sbjct: 425 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 484
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
+MP+EP E I G+LLSAC +H+++E + +A +K + G + +N+YA GQW
Sbjct: 485 SMPWEPNEVIWGSLLSACRLHKNVEYAE-IAVNELSKLQPSNAGNYAVLSNIYAEAGQWS 543
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ + R M TG KTAGSS +E+N ++H+F G H
Sbjct: 544 DMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKH 582
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 37/259 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V D + +L A S +G +H K +V AL+ M+ C
Sbjct: 313 MKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC 372
Query: 61 IDDAFKVFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
++ A VF+ + +KD ++WNS++ FA G D A++L M + FN
Sbjct: 373 VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQ---GFN-------- 421
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNT 174
D V+ +++ A T+ G +++ F M ++ + +
Sbjct: 422 ----------------PDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGC 465
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ R L E VDL M +P+ + S+LSAC ++E A I V
Sbjct: 466 MIDLLGRGGLIKEAVDLIKSMP---WEPNEVIWGSLLSACRLHKNVEY-AEIAVNELSKL 521
Query: 235 LASNPHATTALIDMYAKCG 253
SN L ++YA+ G
Sbjct: 522 QPSNAGNYAVLSNIYAEAG 540
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 179/459 (38%), Positives = 275/459 (59%), Gaps = 7/459 (1%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLM--LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D++++ L+KA LS++ + + +H +K G +V AL+ Y DA K
Sbjct: 5 DSFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 61
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF++MPE+D+++WN+ + A G++ KL D MP KD S+N ++ GY + G++ +A
Sbjct: 62 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 121
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
+F ++P ++VVSW++++ Y G++E A +F KM KN++TW MV+ + L
Sbjct: 122 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 181
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E LF +MK +V+ D V S+L+ACA GSL G RIH Y L + H ALI
Sbjct: 182 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 241
Query: 247 DMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
DM+ KCG + ++ VF V KD WN++I G A+HG+G AL+L +M D
Sbjct: 242 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 301
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+T I +LSAC+H G V EG FS ME+D+G+ ++EHYGCM+DLLGR L+ A++LI+
Sbjct: 302 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 361
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
+MP+EP E I G+LLSAC +H+++E + +A +K + G + +N+YA GQW
Sbjct: 362 SMPWEPNEVIWGSLLSACRLHKNVEYAE-IAVNELSKLQPSNAGNYAVLSNIYAEAGQWS 420
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ + R M TG KTAGSS +E+N ++H+F G H
Sbjct: 421 DMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKH 459
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 37/259 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V D + +L A S +G +H K +V AL+ M+ C
Sbjct: 190 MKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC 249
Query: 61 IDDAFKVFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
++ A VF+ + +KD ++WNS++ FA G D A++L M + FN
Sbjct: 250 VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQ---GFN-------- 298
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNT 174
D V+ +++ A T+ G +++ F M ++ + +
Sbjct: 299 ----------------PDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGC 342
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ R L E VDL M +P+ + S+LSAC ++E A I V
Sbjct: 343 MIDLLGRGGLIKEAVDLIKSMPW---EPNEVIWGSLLSACRLHKNVEY-AEIAVNELSKL 398
Query: 235 LASNPHATTALIDMYAKCG 253
SN L ++YA+ G
Sbjct: 399 QPSNAGNYAVLSNIYAEAG 417
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 188/507 (37%), Positives = 292/507 (57%), Gaps = 45/507 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E G+ DN+++P + KA G L L G KTG YV+ +L+ MY L
Sbjct: 128 LREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLAL 187
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-------DLMP---------- 103
D +F++MP++D+I+WN M+ + C + + A+ + LMP
Sbjct: 188 TDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLS 247
Query: 104 -----------------LKDVTSF-----NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
++D F N ++ Y + G + AR +F+++P+K+V+ W
Sbjct: 248 ACTALKRLELGKKIHHYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICW 307
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+++ Y N GE+E+A E+F+ +++V+ W M+ GY++ + E V LF EM+ VK
Sbjct: 308 TTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVK 367
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD V S+L+ CA G++E G IH + +N + + TALI+MYAKCG IE++LE+
Sbjct: 368 PDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEI 427
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
FY +VKD W ++I GLA++G AL+L +M + V+ DDITFIG+LSACSH GLV
Sbjct: 428 FYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLV 487
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP---TESILGA 378
+EG + F+ M ++ + K+EHYGC+VDLLGRA LL+ A ELI+ +P E T + G+
Sbjct: 488 EEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGS 547
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDT 437
LLSAC I+ ++E+G+RVAK + + SD + + AN+YA +WE+ + R M D
Sbjct: 548 LLSACRIYGNVEMGERVAKQLVKFES--SDSSVHTLLANIYAFADRWEDVTKVRRKMKDL 605
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ KT G S IEV+ H+F +G H
Sbjct: 606 GVKKTPGCSSIEVDSIIHEFFSGHPSH 632
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 7/252 (2%)
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNA--GEMEKAGEMFKKMLVKNVITWNTMVT 177
+ +IH+ IF +D+VS N L+ T+ G + A +MFK + ++ +N ++
Sbjct: 53 LKQIHAQ--IFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIK 110
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
+ + Y + LF +++ + PD T V A LG + ++ T GL
Sbjct: 111 AFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEF 170
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ + +LIDMYA+ + +F + +DV WN MI G A+ + M
Sbjct: 171 DTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQ 230
Query: 298 -DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+S + D+ T + LSAC+ ++ G ++ + + T + + ++D+ +
Sbjct: 231 EESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGN--ALLDMYCKCGC 288
Query: 357 LDRAIELIEAMP 368
L A + E MP
Sbjct: 289 LSIARAVFEEMP 300
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/472 (38%), Positives = 279/472 (59%), Gaps = 11/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS-LR 59
M+ GV D Y+FP +LKA G GL++H + ++ G ++ AL+ Y L
Sbjct: 104 MRSCGVRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILD 163
Query: 60 CIDDAFKVFEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
CI KVF++ +D+++WNSM+ + CG+M A +L D MP +D S+ +I GY
Sbjct: 164 CIS-GRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGY 222
Query: 118 ARIGK--IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ G + AR +FD++ +D+V WNS+I Y G M++A +F++M +NVI+W+ +
Sbjct: 223 GKQGGAGVDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIV 282
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ G++R E ++ F M ++PD + +SACA LG+LE G +H Y +
Sbjct: 283 IDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKV 342
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
S+ TALIDMY KCG ++ ++ +F + V WN MI+GL HGYG A+ L
Sbjct: 343 LSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHR 402
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M V DD++ + +L+AC+HAGLV EG E+F RM+KDFG+ K+EHYG +VDLLGRA
Sbjct: 403 MEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAG 462
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD--GELMM 413
LD+A IE MP EPT + G+LL+AC H +E+ + + + +N +D G ++
Sbjct: 463 RLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERL---ANLGADDSGVYVL 519
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
+N+YA G W + R R +M+D G+ K G SVIEV+G H+F+ GG HL
Sbjct: 520 LSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFVNGGGSHL 571
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 22/210 (10%)
Query: 167 KNVITWNTMV----TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
++ WNT + G R+ L F M++ V+PD T +VL AC
Sbjct: 77 RDPFPWNTAIRLHAPGRPRAALL-----YFARMRSCGVRPDAYTFPAVLKACGCAPGCRA 131
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ--VKDVFCWNAMILGL 280
G +H A GL ++ ALI Y + +VF ++ +D+ WN+M+ G
Sbjct: 132 GLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGY 191
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG--LVQEGCELFSRMEKDFGVT 338
G + L E+ D + D ++ L+ G V ELF +M +
Sbjct: 192 V----GCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQMTE----- 242
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
R L + M+D R +D A L E MP
Sbjct: 243 RDLVCWNSMIDGYARHGRMDEARSLFEEMP 272
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 190/500 (38%), Positives = 292/500 (58%), Gaps = 37/500 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D +S L+LKA L G+ HG KTG +++Q L+ +Y C+ A
Sbjct: 118 GVSVDKFSLSLVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFA 177
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYA-RIG 121
+VF++M ++D +++NSM+D + CG ++ A +L DLMP K++ S+N MI+GYA R
Sbjct: 178 RQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRAD 237
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW--------- 172
+ A +FD++P KD++SWNSLI Y G +E A ++F KM ++V+TW
Sbjct: 238 GVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAK 297
Query: 173 ----------------------NTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTS 209
N+M+ GY++++ ++E +D+F++M K ++ PD T+
Sbjct: 298 LGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVI 357
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
VLSA A LG L +H+Y + ALIDMY+KCGSI+Q++ VF + + K
Sbjct: 358 VLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKS 417
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WNAMI GLA+HG G +A +L ++ +K DDITF+G+L+ACSH+GLV+EG F
Sbjct: 418 IDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFE 477
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M++ + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC H++
Sbjct: 478 LMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEF 537
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E G+ VAK + ++ Y + ++ +N+YAS G W+E R R MM + I K G S IE
Sbjct: 538 ETGELVAKHLILQAGY-NPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIE 596
Query: 450 VNGSYHKFLAGGIGHLSNLL 469
++GS H+F + LSN L
Sbjct: 597 LDGSVHEFFVDSM-ELSNTL 615
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 41/236 (17%)
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V++ WN ++ + + + LF M V D +++ VL AC+ LG ++ G +
Sbjct: 85 VEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQ 144
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGS------------------------------- 254
H + G+ S+ LI +Y KCG
Sbjct: 145 XHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGL 204
Query: 255 IEQSLEVF--YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
IE + E+F S+ K++ WN+MI G A G + + + D + D I++ L+
Sbjct: 205 IESARELFDLMPSEKKNLISWNSMINGYAQRADG---VDIASNLFDEMPEKDLISWNSLI 261
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G +++ +LF +M + VT + MVD + + +A L + MP
Sbjct: 262 DGYVKHGRIEDAKDLFDKMPRRDVVT-----WATMVDGYAKLGFVHQAKSLFDQMP 312
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 75/214 (35%), Gaps = 47/214 (21%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI-----------DMYAKCGS 254
+++ + + E ++IH G N + TT ++ +A+C
Sbjct: 13 SISPTIQLLGTCKTSEDVSKIHARKGTTGFIKNTNLTTRIVLAFAASRRSYLAEFARCVF 72
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGL 311
E + V+D F WNA+I H +G AL L M + V D + +
Sbjct: 73 HEYHVSSXXSGNVEDPFLWNAVIKS---HSHGVEPRKALLLFFLMLKNGVSVDKFSLSLV 129
Query: 312 LSACSHAGLVQE------------------------------GCELFSRMEKDFGVTRKL 341
L ACS G V+E GC F+R D R
Sbjct: 130 LKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDS 189
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
Y M+D + L++ A EL + MP E I
Sbjct: 190 VSYNSMIDGYVKCGLIESARELFDLMPSEKKNLI 223
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 182/472 (38%), Positives = 287/472 (60%), Gaps = 18/472 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR- 59
M G + ++FP+++K+ +++ G +H K GF + +V AL+ MY SLR
Sbjct: 111 MHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMY-SLRG 169
Query: 60 --CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
+ DA+KVF +M +K++ AW +++ A +C M A +L DL P +DV +N+++SGY
Sbjct: 170 GVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGY 229
Query: 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+G + +AR +FD++P +DV+SWN+++ Y GE+E ++F++M V+NV +WN ++
Sbjct: 230 IELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIG 289
Query: 178 GYLRSQLYIEVVDLFDEM-----------KAGNVKPDYLTVTSVLSACANLGSLETGARI 226
GY+R+ L+ E ++ F M G V P+ TV +VL+AC+ LG LE G +
Sbjct: 290 GYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWV 349
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
HVYA G N ALIDMYAKCG IE++L+VF VKD+ WN +I GLA+HG+
Sbjct: 350 HVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHV 409
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL L M + + D +TF+G+LSAC+H GLV+ G F M D+ + ++EHYGC
Sbjct: 410 ADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGC 469
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNY 405
MVDLLGRA L+D+A++++ MP EP I ALL AC +++++E+ + + +++ + N
Sbjct: 470 MVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPN- 528
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+ G +M +N+Y G+ ++ R + M DTG K G SVI N S +F
Sbjct: 529 -NPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSMVEF 579
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 62/335 (18%)
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
S I A G + +A +F K N TWN M GY ++ +++VV LF M P
Sbjct: 59 SFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASP 118
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS--IEQSLE 260
+ T V+ +CA + + G +H G SN ALI MY+ G + + +
Sbjct: 119 NCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYK 178
Query: 261 VFYKSQVKDVFCWNAMILG--------------------------LALHGY-----GYAA 289
VF + + K+VF W A++ + + GY AA
Sbjct: 179 VFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAA 238
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+L M D D +++ +LS + G V+ +LF M R + + ++
Sbjct: 239 RELFDRMPDR----DVMSWNTVLSGYATNGEVESFVKLFEEMP-----VRNVYSWNGLIG 289
Query: 350 LLGRARLLDRAIE-------LIEAMPFE-------PTESILGALLSACVIHQDLEIGDRV 395
R L A+E L+E E P + + A+L+AC DLE+G V
Sbjct: 290 GYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWV 349
Query: 396 ---AKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
A+ + K N L+ ++YA CG E+A
Sbjct: 350 HVYAESIGYKGNLFVGNALI---DMYAKCGVIEKA 381
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V+ ++++ C L ++ H GL N + T + I A+ G I ++
Sbjct: 21 VEDKFISLLRTCGTCVRLHQIQAQIVTH------GLEGNDYVTPSFITACARLGGIRRAR 74
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
VF K+ + WNAM G A + L M+ + + TF ++ +C+ A
Sbjct: 75 RVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATAN 134
Query: 320 LVQEGCEL 327
+EG E+
Sbjct: 135 AAKEGEEV 142
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/508 (38%), Positives = 289/508 (56%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP L K+ ++ G +H Q +K G ++V T+L+ MY
Sbjct: 69 MISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGI 128
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF+ +D++++ +M+ +AS G MD A K+ D +P+KDV S+N MISGYA I
Sbjct: 129 VEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEI 188
Query: 121 GKIHSARYIFDKVPAKDVV--------------------------SW------------- 141
G+ A +F+++ DV SW
Sbjct: 189 GRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLV 248
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GEME+A +F+ + K+VI+WNT++ GY + E + +F EM
Sbjct: 249 NALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET 308
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA+LG+++ G IHVY G+ +N T+LIDMYAKCG+IE +
Sbjct: 309 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAAN 368
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF K + NAMI G A+HG AA LL M ++ DDITF+GLLSACSHAG
Sbjct: 369 QVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAG 428
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
L G ++F M D+ + KLEHYGCM+DLLGR+ L A ELI +M EP I G+L
Sbjct: 429 LSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSL 488
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC IH++LE+G+ +A+ + K + G ++ +N+YA+ +W++ R R ++ND G+
Sbjct: 489 LKACKIHKNLELGELIAQKL-MKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGL 547
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+FL G H N
Sbjct: 548 KKVPGCSSIEIDSMVHEFLIGDKFHPQN 575
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/360 (29%), Positives = 177/360 (49%), Gaps = 48/360 (13%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDA--------------------------------FASCGQ 91
A VF+ + E + ++WN+M+ F SC +
Sbjct: 31 AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90
Query: 92 MDHAM--KLIDLMPLK-----DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
A K I LK D+ +IS YA+ G + A +FD +DVVS+ ++
Sbjct: 91 SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I Y + G M+KA +MF ++ +K+V++WN M++GY Y E ++LF+EM +VKPD
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T+ +VLS C + G++E G +IH + ++G SN ALID+Y+KCG +E++ +F
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEG 270
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
Q KDV WN +I G A + AL + EM +D+T + +L AC+H G + G
Sbjct: 271 LQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIG 330
Query: 325 CELFSRMEKDF-GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
+ ++K G+ ++D+ + ++ A ++ ++IL LS+C
Sbjct: 331 RWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVF--------DTILNKSLSSC 382
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 234 GLASNPHATTALID---MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
GL + +A + L+D + + ++ VF Q + WN MI G AL +AL
Sbjct: 4 GLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISAL 63
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L M + + TF L +C+ + QEG ++ +++ K +G+T L + ++ +
Sbjct: 64 NLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILK-YGLTVDLHVHTSLISM 122
Query: 351 LGRARLLDRA 360
+ +++ A
Sbjct: 123 YAQNGIVEDA 132
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 188/506 (37%), Positives = 285/506 (56%), Gaps = 43/506 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E G+ DN+++P + KA G L G ++G +K+G YV +L+ MY +
Sbjct: 123 LREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGR 182
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----------------- 103
+ + +VFE+MP++D+++WN ++ + C + + A+ + M
Sbjct: 183 VQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLS 242
Query: 104 -----------------LKDVTSFNIMISG-----YARIGKIHSARYIFDKVPAKDVVSW 141
+++ F I I Y + G + AR IF+ +P K V+ W
Sbjct: 243 ACIALKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICW 302
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ Y N G++++A E+F++ V++V+ W M+ GY++ + + V LF EM+ V
Sbjct: 303 TSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVS 362
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ ++L+ CA LG+LE G IH Y +N + + TALI+MYAKCG IE+SLE+
Sbjct: 363 PDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEI 422
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + KD W ++I GLA++G AL+L EM + VK DDITFIG+LSACSH GLV
Sbjct: 423 FNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLV 482
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL---GA 378
+EG + F M + + KLEHYGC++DLLGRA LD A ELIE P E I+ GA
Sbjct: 483 EEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGA 542
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
LLSAC H ++E+G+RVAK + + S ++ AN+YAS +WE+ + R M D G
Sbjct: 543 LLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLL-ANIYASADRWEDVTKVRRKMKDLG 601
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ K G S +EVNG H+FL G H
Sbjct: 602 VKKVPGCSSVEVNGIVHEFLVGDASH 627
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 105/220 (47%), Gaps = 3/220 (1%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G + A +F + + + +N ++ + ++ + + V LF +++ + PD T V
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
A LG + G +++ + +GL + + +L+DMYA+ G ++ +VF + +DV
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199
Query: 272 CWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
WN +I G A+ + M S ++ ++ T + LSAC +++ G E+
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY 259
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
+ + G T K+ + +VD+ + L A E+ MP +
Sbjct: 260 VREQLGFTIKIGN--ALVDMYCKCGHLSIAREIFNDMPIK 297
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/502 (36%), Positives = 279/502 (55%), Gaps = 47/502 (9%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D ++FP L+KAA L G HG IK V++ +L+ Y + ++V
Sbjct: 134 PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRV 193
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-------------------- 107
F +P +D+++WNSM+ AF G + A++L M ++V
Sbjct: 194 FVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDF 253
Query: 108 -------------------TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
T N M+ Y + G + A+ +FDK+P KD+VSW ++++ Y
Sbjct: 254 EFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGY 313
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTV 207
GE + A +F M +++ WN +++ Y + E ++LF E++ + KPD +T+
Sbjct: 314 AKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTL 373
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
S LSACA LG+++ G IHVY G+ N H TT+LIDMY KCG ++++L VF+ +
Sbjct: 374 VSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVER 433
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
KDVF W+AMI GLA+HG+G A+ L +M + VK + +TF +L ACSH GLV+EG
Sbjct: 434 KDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTF 493
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F++ME +GV ++HY CMVD+LGRA LL+ A+ELIE MP P S+ GALL AC IH+
Sbjct: 494 FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHE 553
Query: 388 DLEIGDRVAKMVCAKSNYLSDGE---LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
++ + A+ C++ L G ++ +N+YA G+W+ + R +M D G+ K G
Sbjct: 554 NVVL----AEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPG 609
Query: 445 SSVIEVNGSYHKFLAGGIGHLS 466
S IEV+G H+FL G H S
Sbjct: 610 CSSIEVDGIVHEFLVGDNSHPS 631
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 157/315 (49%), Gaps = 21/315 (6%)
Query: 32 LHGQTIKTG-----FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF 86
+H Q ++TG F + A L + SL D A +VF+++P ++ WN+++ A+
Sbjct: 54 IHAQMLRTGLFFDPFSASRLITAAALSPFPSL---DYAQQVFDQIPHPNLYTWNTLIRAY 110
Query: 87 ASCGQMDHAM----KLIDLMP-LKDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKD 137
AS ++ +++ P D +F +I + + ++ + + + + D
Sbjct: 111 ASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSD 170
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V NSLI Y GE+ +F + ++V++WN+M+T +++ E ++LF EM+
Sbjct: 171 VFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMET 230
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
NVKP+ +T+ VLSACA E G +H Y N + + + A++DMY KCGS+E
Sbjct: 231 QNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVED 290
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +F K KD+ W M++G A G AA + M + + A + L+SA
Sbjct: 291 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAA----WNALISAYEQ 346
Query: 318 AGLVQEGCELFSRME 332
G +E ELF ++
Sbjct: 347 CGKPKEALELFHELQ 361
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 144/329 (43%), Gaps = 50/329 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V + + +L A S G +H + + + A+L MY
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGS 287
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA ++F+KMPEKDI++W +ML +A G+ D A + D MP +D+ ++N +IS Y +
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQC 347
Query: 121 GKIHSARYIFDKVP-----------------------AKDVVSW---------------- 141
GK A +F ++ A D+ W
Sbjct: 348 GKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHL 407
Query: 142 -NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
SLI Y G+++KA +F + K+V W+ M+ G + + LF +M+ V
Sbjct: 408 TTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKV 467
Query: 201 KPDYLTVTSVLSACANLGSLETGARIH-----VYATDNGLASNPHATTALIDMYAKCGSI 255
KP+ +T T++L AC+++G +E G VY G+ ++D+ + G +
Sbjct: 468 KPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKH----YACMVDILGRAGLL 523
Query: 256 EQSLEVFYK-SQVKDVFCWNAMILGLALH 283
E+++E+ K W A++ +H
Sbjct: 524 EEAVELIEKMPMAPAASVWGALLGACTIH 552
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 6/241 (2%)
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
FD A +++ +L + ++ A ++F ++ N+ TWNT++ Y S +
Sbjct: 64 FFDPFSASRLITAAAL----SPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQS 119
Query: 189 VDLFDEMKAGNVK-PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ +F M + PD T ++ A + L L TG H L S+ +LI
Sbjct: 120 LLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIH 179
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
YAKCG + VF +DV WN+MI G AL+L EM VK + IT
Sbjct: 180 FYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGIT 239
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+G+LSAC+ + G + S +E++ + L M+D+ + ++ A L + M
Sbjct: 240 MVGVLSACAKKSDFEFGRWVHSYIERN-RIGESLTLSNAMLDMYTKCGSVEDAKRLFDKM 298
Query: 368 P 368
P
Sbjct: 299 P 299
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 184/504 (36%), Positives = 291/504 (57%), Gaps = 37/504 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E+GV D +S L++KA L GL +HG KTG +++Q L+ +Y C
Sbjct: 78 MLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLWSDLFLQNCLIGLYLKCGC 137
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL---------------- 104
+ A ++F++MP++D +++NSM+D + CG ++ A +L DLMP
Sbjct: 138 LGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKNLISWNSLISGYA 197
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KD+ S+N MI GY + G+I A+ +FD VP +DVV+W ++I
Sbjct: 198 QTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMID 257
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y G + +A +F +M ++V+ +N+M+ GY++++ ++E +++F +M K ++ PD
Sbjct: 258 GYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDET 317
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L +H+Y + ALIDMY+KCGSI+ ++ VF
Sbjct: 318 TLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGI 377
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L ++ +K DDITF+G+L+ACSH+GLV+EG
Sbjct: 378 ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGL 437
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 438 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSH 497
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + +++Y + ++ +N+YAS G W++ R R MM + I K G
Sbjct: 498 HKEFETGELVAKHLILQADY-NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGC 556
Query: 446 SVIEVNGSYHKFLAGGIGHLSNLL 469
S IE++G H+F GI +SN L
Sbjct: 557 SWIELDGXVHEFFVDGI-EVSNTL 579
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 43/237 (18%)
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V++ WN M+ + + LF M V D +++ V+ AC+ LG ++ G +
Sbjct: 49 VEDPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQ 108
Query: 226 IHVYATDNGLASNPHATTALIDMYA-------------------------------KCGS 254
IH + GL S+ LI +Y KCGS
Sbjct: 109 IHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGS 168
Query: 255 IEQSLEVF--YKSQVKDVFCWNAMILGLALHGYGY-AALKLLGEMNDSCVKADDITFIGL 311
IE + E+F ++K++ WN++I G A G A KL EM + D I++ +
Sbjct: 169 IESASELFDLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEK----DLISWNSM 224
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ G +++ +LF D R + + M+D + + +A L + MP
Sbjct: 225 IDGYVKHGRIEDAKDLF-----DMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMP 276
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGS---IEQSLEVF----YKSQVKDVFCWNAMILG 279
H G+ N + TT ++ +A E + VF Y +V+D + WNAMI
Sbjct: 2 HARLIKTGIIKNSNLTTRIVLAFAASPRPYLAEFARFVFHEYHYGGEVEDPYLWNAMIKS 61
Query: 280 LALHGYG---YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
H +G AL L M + V D + ++ ACS G V+ G ++ ++K G
Sbjct: 62 ---HSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKT-G 117
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ L C++ L + L A ++ + MP
Sbjct: 118 LWSDLFLQNCLIGLYLKCGCLGFARQIFDRMP 149
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 179/459 (38%), Positives = 279/459 (60%), Gaps = 4/459 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ L V + ++FP++LK+ +++ G +H IK+GF + +V T L+ MY S
Sbjct: 42 MKGLDVMPNCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGA 101
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A++VF +M E+++IAW +M++ + +C + A +L DL P +D+ +N MISGY
Sbjct: 102 IHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEA 161
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR +FDK+P KDV+SWN+++ Y + G++ +F++M +NV +WN ++ GY
Sbjct: 162 KDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYT 221
Query: 181 RSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
R+ + EV+ F M G V P+ T+ +VLSACA LG+L+ G +HVYA +G N
Sbjct: 222 RNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNV 281
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ AL+DMYAKCG +E +L+VF KD+ WN +I GLA+HG+G AL L M +
Sbjct: 282 YVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIA 341
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
D ITFIG+L AC+H GLV++G F M D+ + ++EHYGC+VDLLGRA LL
Sbjct: 342 GENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAH 401
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLY 418
A++ I MP E I ALL AC +++++E+ + + K++ + + +M +N+Y
Sbjct: 402 AVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPK--NPANYVMLSNIY 459
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
G+W++ R + M DTG K G S+IEVN +F
Sbjct: 460 GDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVEF 498
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 130/310 (41%), Gaps = 46/310 (14%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
ME A ++F ++ N WN M GY +++ + +V+ LF +MK +V P+ T +L +
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
C + +L+ G +H + +G +NP T LIDMYA G+I + VF + ++V W
Sbjct: 61 CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-E 332
AMI G A +L D + D + + ++S A V ELF +M
Sbjct: 121 TAMINGYITCCDLVTARRLF----DLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPN 176
Query: 333 KD-FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE--------------------- 370
KD L Y D++ RL + E+ E F
Sbjct: 177 KDVMSWNTVLNGYASNGDVMACERLFE---EMPERNVFSWNALIGGYTRNGCFSEVLSAF 233
Query: 371 ----------PTESILGALLSACVIHQDLEIGDRV---AKMVCAKSNYLSDGELMMFANL 417
P ++ L +LSAC L++G V A+ K N LM ++
Sbjct: 234 KRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALM---DM 290
Query: 418 YASCGQWEEA 427
YA CG E A
Sbjct: 291 YAKCGVVETA 300
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 181/497 (36%), Positives = 287/497 (57%), Gaps = 41/497 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ ++FP ++KAA L +S +G +HG IK F +Y+ +L++ YG+ + A ++
Sbjct: 124 PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERL 183
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI------DLMPLK---------------- 105
F+ + KD+++WNSM+ AFA + A++L ++MP
Sbjct: 184 FKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDL 243
Query: 106 -----------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
D+T N M+ Y + G + A+ +FD++P +DV SW ++ Y
Sbjct: 244 EFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGY 303
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPDYLTV 207
G+ + A +F M VK + WN +++ Y ++ E + +F+E++ + KPD +T+
Sbjct: 304 AKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTL 363
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
S LSACA LG+++ G IHVY G+ N H ++L+DMYAKCGS+E++LEVFY +
Sbjct: 364 VSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEE 423
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+DV+ W+AMI GL +HG G AA+ L EM ++ VK + +TF +L ACSHAGLV EG
Sbjct: 424 RDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVF 483
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F ME +GV +++HY CMVD+LGRA L+ A+ELI M P+ S+ GALL AC +H
Sbjct: 484 FHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHM 543
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++E+G+ + + K + G +++ +N+YA G+WE+ + R +M DT + K G S
Sbjct: 544 NVELGELASDQLL-KLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSS 602
Query: 448 IEVNGSYHKFLAGGIGH 464
IE NG+ H+FL G H
Sbjct: 603 IEANGNVHEFLVGDNTH 619
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 174/376 (46%), Gaps = 44/376 (11%)
Query: 32 LHGQTIKTGFCGHVYVQTALL--KMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+H + ++TG + + L S +D A +F+++P+ ++ WN+++ A+AS
Sbjct: 44 VHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASS 103
Query: 90 GQMDHAMKL-IDLM------PLKDVTSFNIMISGYARIGKIHSARY--IFDKVPAKDVVS 140
+ + +DL+ P K F I + + ++ +A + D+
Sbjct: 104 SDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYI 163
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
NSL+ Y G++ A +FK + K+V++WN+M++ + + + ++LF +M+ NV
Sbjct: 164 LNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENV 223
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T+ VLSACA LE G + Y G+ + A++DMY KCGS++ + +
Sbjct: 224 MPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQK 283
Query: 261 VFYKSQVKDVFCWNAMILGLA-------------------------------LHGYGYAA 289
+F + +DVF W M+ G A +G A
Sbjct: 284 LFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEA 343
Query: 290 LKLLGEMNDSCV-KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
L + E+ S + K D++T + LSAC+ G + G + ++++ G+ +V
Sbjct: 344 LAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKRE-GIVLNCHLISSLV 402
Query: 349 DLLGRARLLDRAIELI 364
D+ + L++A+E+
Sbjct: 403 DMYAKCGSLEKALEVF 418
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 191/511 (37%), Positives = 291/511 (56%), Gaps = 53/511 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E G+ D +++P +LKA G L G + G +KTG YV +L+ MY L
Sbjct: 234 LREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSN 293
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---------------LK 105
+++A K+F++M +D ++WN M+ + C + + A+ M L
Sbjct: 294 VENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLS 353
Query: 106 DVTSF------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
T+ N ++ YA+ G ++ AR IFD++ K+V+ W
Sbjct: 354 ACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICW 413
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S+I Y N G++ +A ++F K V++V+ W M+ GY++ + + V LF EM+ VK
Sbjct: 414 TSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVK 473
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD TV ++L+ CA LG+LE G IH Y +N + + TALI+MY+KCG +++SLE+
Sbjct: 474 PDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEI 533
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
FY+ + KD W ++I GLA++G AL+L EM K DDITFIG+LSACSH GLV
Sbjct: 534 FYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLV 593
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL---GA 378
+EG F+ M+K + K+EHYGC++DLLGRA LLD A ELI+ +P E E ++ GA
Sbjct: 594 EEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGA 653
Query: 379 LLSACVIHQDLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
LLSAC IH ++++G+R+AK + C S + + AN+YAS +WE+A + R
Sbjct: 654 LLSACRIHNNVDMGERLAKKLENIESCDSSIH------TLLANIYASVDRWEDAKKVRRK 707
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M + G+ K G S+IEV+G H+FL G H
Sbjct: 708 MKELGVKKMPGCSLIEVDGIVHEFLVGDPSH 738
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 111/233 (47%), Gaps = 3/233 (1%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+D ++ A ++ G + A ++F + ++ +N MV Y + + +V+ LF ++
Sbjct: 175 RDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQL 234
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
+ + PD T VL A L + G ++ + G+ + + +LIDMY + ++
Sbjct: 235 REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNV 294
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSA 314
E + ++F + +D WN MI G A+ EM + K D+ T + LSA
Sbjct: 295 ENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSA 354
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
C+ ++ G E+ + + K+ G T ++++ ++D+ + L+ A + + M
Sbjct: 355 CTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 28/234 (11%)
Query: 203 DYLTVTSVLSACAN--LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
D T+ +++ CA+ LG+L +I Y D L ++ MYAK G + + L
Sbjct: 174 DRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSL----FVYNVMVKMYAKRGILRKVLL 229
Query: 261 VFYKSQVKDVFCW-NAMILGLALHGYG-----YAALKLLGEMNDSCVKADDITFIGLLSA 314
+F Q+++ W + L G K+ G + + + D+ + L+
Sbjct: 230 LF--QQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDM 287
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---- 370
V+ +LF M TR + M+ R R + AI M E
Sbjct: 288 YYELSNVENAKKLFDEM-----TTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEK 342
Query: 371 PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS--DGELMMFANLYASCG 422
P E+ + + LSAC ++LE+GD + V + + + D L+ ++YA CG
Sbjct: 343 PDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALL---DMYAKCG 393
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 190/511 (37%), Positives = 291/511 (56%), Gaps = 53/511 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E G+ D +++P +LKA G L G + G +KTG YV +L+ MY L
Sbjct: 188 LREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSN 247
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---------------LK 105
+++A K+F++M +D ++WN M+ + C + + A+ M L
Sbjct: 248 VENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLS 307
Query: 106 DVTSF------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
T+ N ++ YA+ G ++ AR IFD++ K+V+ W
Sbjct: 308 ACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICW 367
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S+I Y N G++ +A ++F K V++V+ W M+ GY++ + + V LF EM+ +K
Sbjct: 368 TSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIK 427
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD TV ++L+ CA LG+LE G IH Y +N + + TALI+MY+KCG +++SLE+
Sbjct: 428 PDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEI 487
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
FY+ + KD W ++I GLA++G AL+L EM K DDITFIG+LSACSH GLV
Sbjct: 488 FYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLV 547
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL---GA 378
+EG F+ M+K + K+EHYGC++DLLGRA LLD A ELI+ +P E E ++ GA
Sbjct: 548 EEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGA 607
Query: 379 LLSACVIHQDLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
LLSAC IH ++++G+R+AK + C S + + AN+YAS +WE+A + R
Sbjct: 608 LLSACRIHNNVDMGERLAKKLENIESCDSSIH------TLLANIYASVDRWEDAKKVRRK 661
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M + G+ K G S+IEV+G H+FL G H
Sbjct: 662 MKELGVKKMPGCSLIEVDGIVHEFLVGDPSH 692
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 111/233 (47%), Gaps = 3/233 (1%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+D ++ A ++ G + A ++F + ++ +N MV Y + + +V+ LF ++
Sbjct: 129 RDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQL 188
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
+ + PD T VL A L + G ++ + G+ + + +LIDMY + ++
Sbjct: 189 REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNV 248
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSA 314
E + ++F + +D WN MI G A+ EM + K D+ T + LSA
Sbjct: 249 ENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSA 308
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
C+ ++ G E+ + + K+ G T ++++ ++D+ + L+ A + + M
Sbjct: 309 CTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM 359
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 28/234 (11%)
Query: 203 DYLTVTSVLSACAN--LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
D T+ +++ CA+ LG+L +I Y D L ++ +YAK G + + L
Sbjct: 128 DRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSL----FVYNVMVKIYAKRGILRKVLL 183
Query: 261 VFYKSQVKDVFCW-NAMILGLALHGYG-----YAALKLLGEMNDSCVKADDITFIGLLSA 314
+F Q+++ W + L G K+ G + + + D+ + L+
Sbjct: 184 LF--QQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDM 241
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---- 370
V+ +LF M TR + M+ R R + AI M E
Sbjct: 242 YYELSNVENAKKLFDEM-----TTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEK 296
Query: 371 PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS--DGELMMFANLYASCG 422
P E+ + + LSAC ++LE+GD + V + + + D L+ ++YA CG
Sbjct: 297 PDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALL---DMYAKCG 347
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 167/460 (36%), Positives = 274/460 (59%), Gaps = 5/460 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS--L 58
MQ+ G+ ADN+++P LLKA M+H K GF G ++V +L+ Y L
Sbjct: 112 MQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGL 171
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
++ A K+F +M EKD+++WNSM+ G + A KL D M +D S+N ++ GY
Sbjct: 172 LGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYV 231
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ G++ A +F+K+P ++VVSW++++ Y G+ME A +F KM KN++TW +++G
Sbjct: 232 KAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISG 291
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+ L E L+++M+A +KPD T+ S+L+ACA G L G ++H + +
Sbjct: 292 FAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCS 351
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+ + AL+DMYAKCG ++++L +F + ++D+ WN M+ GLA+HG+G A++L +M
Sbjct: 352 VNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQ 411
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
K D +T I +L AC+HAG V +G F+ ME+D G+ +EHYGCM+DLLGR L+
Sbjct: 412 EGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLE 471
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGELMMFANL 417
A L+++MP EP + I G LL AC +H + + ++V +++ + + G M +N+
Sbjct: 472 EAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQS--DPGNYSMLSNI 529
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+A+ G W R M TG+ K +G+S IE++ H+F
Sbjct: 530 FAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEF 569
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 124/274 (45%), Gaps = 24/274 (8%)
Query: 101 LMPLKDVTSFNIMISGYARIGK--IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAG 158
L L T FN + +A+I K +H+ Y+ K LI A++ +M A
Sbjct: 27 LQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPK-----------LISAFSLCHQMNLAV 75
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+F ++ NV +NT++ ++++ ++ F +M+ + D T +L AC G
Sbjct: 76 NVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKG 135
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCG--SIEQSLEVFYKSQVKDVFCWNAM 276
L T IH + G + +LID Y+KCG + ++++F + KD+ WN+M
Sbjct: 136 WLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSM 195
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I GL G A KL EM + D +++ +L AG + + LF +M +
Sbjct: 196 IGGLVKAGDLGRARKLFDEM----AERDAVSWNTILDGYVKAGEMSQAFNLFEKMPE--- 248
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
R + + MV + ++ A L + MPF+
Sbjct: 249 --RNVVSWSTMVSGYCKTGDMEMARMLFDKMPFK 280
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 189/504 (37%), Positives = 292/504 (57%), Gaps = 37/504 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y C
Sbjct: 87 MLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGC 146
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYA 118
+ A ++F++MP++D +++NSM+D + CG + A +L DLMP +K++ S+N MISGYA
Sbjct: 147 LGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYA 206
Query: 119 RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW----- 172
+ ++ A +F ++P KD++SWNSLI Y G ME A ++F M ++V+TW
Sbjct: 207 QTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMID 266
Query: 173 --------------------------NTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
N+M+ GY++++ +E +++F +M K ++ PD
Sbjct: 267 GYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDET 326
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L +H+Y + ALIDMY+KCGSI+Q++ VF +
Sbjct: 327 TLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERI 386
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L E+ +K DDITF+G+L+ACSH+GLV+EG
Sbjct: 387 ENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGL 446
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 447 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSH 506
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + ++ Y + ++ +N+YAS G W++A R R MM + + K G
Sbjct: 507 HKEFETGEVVAKHLILQAGY-NPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGC 565
Query: 446 SVIEVNGSYHKFLAGGIGHLSNLL 469
S IE++G H+F I +SN L
Sbjct: 566 SWIELDGRVHEFFVDSI-EVSNTL 588
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGY---AALKLLGEMNDSCVKADDITFIGLLSACSHA 318
F +V+D F WNA+I H +G AL M ++ V D + +L ACS
Sbjct: 53 FAHGEVEDPFLWNAVIKS---HSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRL 109
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G VQEG ++ + K G+ L C++ L + L A ++ + MP
Sbjct: 110 GFVQEGMQIHGFLRKT-GIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMP 158
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 268/476 (56%), Gaps = 22/476 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLM-------LHGQTIKTGFCGHVYVQTALLK 53
MQ G +ADN++FP LLK C G + +H Q K GF V+V +L+
Sbjct: 109 MQRDGHYADNFTFPFLLKV-------CTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLID 161
Query: 54 MYGSLRC----IDDAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
Y +C I A K+F M +D+++WNSM+ A G + A K+ D MP KD
Sbjct: 162 SYS--KCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGI 219
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N M+ GY ++GK+ A +FD++P ++VVSW++++L Y AG+ME A +F KM VKN
Sbjct: 220 SWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKN 279
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+++W +V+G+ L E + LFD+M+ +K D TV S+L+ACA G L G +IH
Sbjct: 280 LVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHA 339
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+N + AL+DMYAKCG + + +VF + KDV WNAM+ GLA+HG+G
Sbjct: 340 SIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVK 399
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL+L M + + +T IG+L AC+HAGL+ +G FS ME+D+ + ++EHYGCMV
Sbjct: 400 ALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMV 459
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DLLGR L+ AI LI MP P I G LL AC +H +E+ V + +
Sbjct: 460 DLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHL-VELEPTDS 518
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G M +N+YA+ G W R M G K +G+S IEVN H+F H
Sbjct: 519 GNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIEVNNEVHEFTVFDRSH 574
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 121/286 (42%), Gaps = 22/286 (7%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI A++ +M A F ++ NV +NTM+ + + + F M+ D
Sbjct: 58 LISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYAD 117
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS--IEQSLEV 261
T +L C L +H G S+ +LID Y+KCGS I + ++
Sbjct: 118 NFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKL 177
Query: 262 FYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F +DV WN+MI GLA G A K+ EM + D I++ +L G
Sbjct: 178 FVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEK----DGISWNTMLDGYVKVGK 233
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES---ILG 377
+ + +LF M + R + + MV +A ++ A L + MP + S I+
Sbjct: 234 MDDAFKLFDEMPE-----RNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVS 288
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
+ + + + D++ K C K L +G +M ++ A+C +
Sbjct: 289 GFAEKGLAREAISLFDQMEK-ACLK---LDNGTVM---SILAACAE 327
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 181/465 (38%), Positives = 269/465 (57%), Gaps = 14/465 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G+ DN+++P LLKA SS + M+H K GF G ++V +L+ Y RC
Sbjct: 111 MQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYS--RC 168
Query: 61 ----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+D A +F M E+D++ WNSM+ CG++ A KL D MP +D+ S+N M+ G
Sbjct: 169 GNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDG 228
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
YA+ G++ +A +F+++P +++VSW++++ Y+ G+M+ A +F + VKNV+ W T++
Sbjct: 229 YAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTII 288
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY L E +L+ +M+ ++PD + S+L+ACA G L G RIH
Sbjct: 289 AGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFR 348
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGE 295
A IDMYAKCG ++ + +VF KDV WN+MI G A+HG+G AL+L
Sbjct: 349 CGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSW 408
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + D TF+GLL AC+HAGLV EG + F MEK +G+ ++EHYGCM+DLLGR
Sbjct: 409 MVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGG 468
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS---DGELM 412
L A L+ +MP EP ILG LL+AC +H D+++ A+ VC + L G
Sbjct: 469 HLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDL----ARAVCEQLFKLEPSDPGNYS 524
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+ +N+YA G W R M +TG K +G+S IEV H+F
Sbjct: 525 LLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEF 569
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 132/324 (40%), Gaps = 46/324 (14%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV-VDLFDE 194
+D+ LI A++ + A +F + NV +N+++ + + + + + F +
Sbjct: 51 QDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQ 110
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M+ + PD T +L AC+ SL IH + G + +LID Y++CG+
Sbjct: 111 MQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGN 170
Query: 255 --IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
++ ++ +F + +DV WN+MI GL G A KL EM D D +++ +L
Sbjct: 171 AGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDR----DMVSWNTML 226
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV-------DLLGRARLLDR------ 359
+ AG + ELF RM R + + MV D+ L DR
Sbjct: 227 DGYAKAGEMDTAFELFERMP-----WRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNV 281
Query: 360 ------------------AIEL---IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
A EL +E P + L ++L+AC L +G R+
Sbjct: 282 VLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHAS 341
Query: 399 VCAKSNYLSDGELMMFANLYASCG 422
+ L F ++YA CG
Sbjct: 342 MRRWRFRCGAKVLNAFIDMYAKCG 365
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 179/465 (38%), Positives = 265/465 (56%), Gaps = 14/465 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G+ DN+++P LLKA SS + M+H K GF G ++V +L+ Y RC
Sbjct: 111 MQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYS--RC 168
Query: 61 ----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+D A +F M E+D++ WNSM+ CG+++ A KL D MP +D+ S+N M+ G
Sbjct: 169 GSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDG 228
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
YA+ G++ A +F+++P +++VSW++++ Y+ G+M+ A +F + KNV+ W T++
Sbjct: 229 YAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTII 288
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY E +L+ +M+ ++PD + S+L+ACA G L G RIH
Sbjct: 289 AGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFR 348
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGE 295
A IDMYAKCG ++ + +VF KDV WN+MI G A+HG+G AL+L
Sbjct: 349 CGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSR 408
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + D TF+GLL AC+HAGLV EG + F MEK +G+ ++EHYGCM+DLLGR
Sbjct: 409 MVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGG 468
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA---KSNYLSDGELM 412
L A L+ +MP EP ILG LL+AC +H D++ A+ VC K G
Sbjct: 469 HLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDF----ARAVCEQLFKVEPTDPGNYS 524
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+ +N+YA G W R M +TG K +G+S IEV H+F
Sbjct: 525 LLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVHEF 569
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 132/324 (40%), Gaps = 46/324 (14%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV-VDLFDE 194
+D+ LI A++ + A +F + NV +N+++ + + + + + F +
Sbjct: 51 QDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQ 110
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M+ + PD T +L AC SL IH + G + +LID Y++CGS
Sbjct: 111 MQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGS 170
Query: 255 --IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
++ ++ +F + +DV WN+MI GL G A KL EM + D +++ +L
Sbjct: 171 AGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPER----DMVSWNTML 226
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV-------DLLGRARLLDR------ 359
+ AG + ELF RM + R + + MV D+ L DR
Sbjct: 227 DGYAKAGEMDRAFELFERMPQ-----RNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNV 281
Query: 360 ------------------AIEL---IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
A EL +E P + L ++L+AC L +G R+
Sbjct: 282 VLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHAS 341
Query: 399 VCAKSNYLSDGELMMFANLYASCG 422
+ L F ++YA CG
Sbjct: 342 MRRWRFRCGTKVLNAFIDMYAKCG 365
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 184/470 (39%), Positives = 270/470 (57%), Gaps = 9/470 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ ADN+++P LLKA LS + M+H K G +YV AL+ Y RC
Sbjct: 108 MQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYS--RC 165
Query: 61 ----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+ DA K+FEKM E+D ++WNSML G++ A KL D MP +D+ S+N M+ G
Sbjct: 166 GGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDG 225
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML--VKNVITWNT 174
YAR ++ A +F+K+P ++ VSW+++++ Y+ AG+ME A MF KM KNV+TW
Sbjct: 226 YARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTI 285
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ GY L E L D+M A ++ D S+L+ACA G L G R H +
Sbjct: 286 IIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSN 345
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L SN AL+DMYAKCGS++++ +VF KD+ WN M+ GL +HG+G A++L
Sbjct: 346 LNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFS 405
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
M + D +TFI +L +C+HAGL+ EG + F MEK + + K+EHYGC+VDLLGR
Sbjct: 406 RMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRG 465
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
L AI++++ MP EP I GALL AC +H +++I V + K + G +
Sbjct: 466 GRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNL-VKLDPSDPGNYTLL 524
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA+ WE R+ M G+ K +G+S +E+ H+F H
Sbjct: 525 SNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSH 574
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 14/236 (5%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY-LRSQLYIEVVDLFDEMKAGNVKP 202
LI A + + A +F ++ NV N+++ + L SQ Y + +F EM+ +
Sbjct: 57 LISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPY-QAFFVFSEMQRFGLFA 115
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG--SIEQSLE 260
D T +L AC+ L L +H + GL+S+ + ALID Y++CG + +++
Sbjct: 116 DNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMK 175
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F K +D WN+M+ GL G A KL EM + D I++ +L +
Sbjct: 176 LFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMP----QRDLISWNTMLDGYARCRE 231
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
+ ELF +M + R + MV +A ++ A + + MPF P ++++
Sbjct: 232 MSRAFELFEKMPE-----RNTVSWSTMVMGYSKAGDMEMARVMFDKMPF-PAKNVV 281
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 17/222 (7%)
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
L CANL ++ ++H L + H LI + C +L VF + Q +V
Sbjct: 26 LPKCANLNQVK---QLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNV 82
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
N++I AL+ Y A + EM + AD+ T+ LL ACS + + +
Sbjct: 83 HLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNH 142
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLL--DRAIELIEAMPFEPT---ESILGALLSACVI 385
+EK G++ + ++D R L A++L E M T S+LG L+ A +
Sbjct: 143 IEK-LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEL 201
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
++ D + + N + DG YA C + A
Sbjct: 202 RDARKLFDEMPQRDLISWNTMLDG--------YARCREMSRA 235
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 173/458 (37%), Positives = 276/458 (60%), Gaps = 2/458 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ + + + ++FP++LK+ G +++ G +H IK GF G+ +V T L+ MY +
Sbjct: 127 MKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGT 186
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA+K+F +M E++++AW SM++ + + A +L DL P +DV +NIM+SGY
Sbjct: 187 VGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEG 246
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +F ++P +DV+ WN+++ Y G +E +F++M +N+ +WN ++ GY
Sbjct: 247 GDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYA 306
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ L+ EV+ F M +V P+ T+ +VLSACA LG+L+ G +HVYA +GL N
Sbjct: 307 HNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNV 366
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ AL+DMYAKCG IE ++ VF KD+ WN +I GLA+H G AL L +M ++
Sbjct: 367 YVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNA 426
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K D ITFIG+L AC+H GLV++G F M D+ + ++EHYGCMVD+L RA L++
Sbjct: 427 GQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQ 486
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A+ + MP E I LL AC I++++E+ + +A + + +M +N+Y
Sbjct: 487 AMAFVRKMPVEADGVIWAGLLGACRIYKNVELAE-LALQRLIELEPKNPANYVMLSNIYG 545
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
G+WE+ R + M DTG K G S+IEVN + +F
Sbjct: 546 DAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEF 583
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 52/314 (16%)
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
M A ++F ++ N+ WN+M GY +S+ Y EVV LF +MK +++P+ T VL
Sbjct: 85 RMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLK 144
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
+C + +L G ++H + G NP T LIDMY+ G++ + ++F + ++V
Sbjct: 145 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 204
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
W +MI G L +A +L D + D + + ++S G + E +LF M
Sbjct: 205 WTSMINGYILSADLVSARRLF----DLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMP 260
Query: 333 -----------KDFGVTRKLE-------------------------HYGCMVDLLGRARL 356
K + +E H G ++LG +
Sbjct: 261 NRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFK- 319
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV---AKMVCAKSNYLSDGELMM 413
++ P ++ L +LSAC L++G V A+ K N LM
Sbjct: 320 -----RMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALM- 373
Query: 414 FANLYASCGQWEEA 427
++YA CG E A
Sbjct: 374 --DMYAKCGIIENA 385
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 184/502 (36%), Positives = 286/502 (56%), Gaps = 37/502 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E V D +S L+LKA L G+ +HG KTG +++Q L+ +Y C
Sbjct: 84 MIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYSDLFLQNCLIGLYLKCGC 143
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL---------------- 104
+ A +VF++MP++D +++NSM+D + CG ++ A +L DLMP
Sbjct: 144 LGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKNLISWNCMISGYT 203
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KD+ S+N +I GY + +I A+ +FD +P KDVV+W ++I
Sbjct: 204 QSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMID 263
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y G + +A ++F +M ++V+ +N+M+ GY++++ + E + +F++M K ++ PD
Sbjct: 264 GYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDET 323
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L IH+Y DN ALID Y+KCGSI++S+ VF +
Sbjct: 324 TLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEI 383
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L ++ +K DDITFIG+L+ACSH+GLV+EG
Sbjct: 384 ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGL 443
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + KL+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 444 LCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSN 503
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + + Y + ++ +N+YAS G W+E R R M + + K G
Sbjct: 504 HKEFETGELVAKHLFLQGGY-NPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGC 562
Query: 446 SVIEVNGSYHKFLAGGIGHLSN 467
S IE++G+ H+F + LSN
Sbjct: 563 SWIELDGNVHEFFVDTM-ELSN 583
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 152/346 (43%), Gaps = 60/346 (17%)
Query: 34 GQTIKTGFCGHVYVQTALLKMYGS---------LRCIDDAFKVFEKMPEKDIIAWNSMLD 84
+ I TGF + + T ++ + + RCI + V E+D WN+++
Sbjct: 7 ARXITTGFIKNPNLTTRIVLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDPFLWNAVIK 66
Query: 85 AFASCGQMDHAMKLIDLMPLKDVT-------------------SFNIMISGYARIGKIHS 125
+F+ +A+ L LM V+ F + + G+ R I+S
Sbjct: 67 SFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYS 126
Query: 126 --------------------ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
AR +FD++P +D VS+NS+I Y G +E A E+F M
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMP 186
Query: 166 V--KNVITWNTMVTGYLRSQLYIEVVD-LFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
KN+I+WN M++GY +S+ + V LFDEM + D ++ S++ +E
Sbjct: 187 REKKNLISWNCMISGYTQSEDGVNVASKLFDEMP----EKDLISWNSLIDGYVKHRRIED 242
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
+ + + +ID YAK G + Q+ ++F + +DV +N+M+ G
Sbjct: 243 AKSLFDLMPRKDVVT----WATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQ 298
Query: 283 HGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+ Y A+ + +M +S + D+ T + +LSA + G + + ++
Sbjct: 299 NKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDI 344
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 10/199 (5%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ + + LF M +V D +++ VL AC+ LG ++ G ++H +
Sbjct: 61 WNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLR 120
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G+ S+ LI +Y KCG + + +VF + +D +N+MI G G +A +
Sbjct: 121 KTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARE 180
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHA-GLVQEGCELFSRM-EKDFGVTRKLEHYGCMVD 349
L M K + I++ ++S + + V +LF M EKD L + ++D
Sbjct: 181 LFDLMPRE--KKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKD------LISWNSLID 232
Query: 350 LLGRARLLDRAIELIEAMP 368
+ R ++ A L + MP
Sbjct: 233 GYVKHRRIEDAKSLFDLMP 251
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 178/459 (38%), Positives = 272/459 (59%), Gaps = 7/459 (1%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLM--LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D++++ L+KA LSSS + + +H +K G YV AL+ Y DA K
Sbjct: 153 DSFTYSFLIKA---LSSSGLTPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASK 209
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VFE+MP +D ++WNS + A G++ A ++ D MP KD S+N ++ GY + GK+ A
Sbjct: 210 VFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDA 269
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
+F +P ++VVSW++++ Y G++E A +F KM KN++TW MV+ ++ L
Sbjct: 270 FELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVE 329
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E LF +MK V+ D V S+L+ACA GSL G RIH Y L + H A+I
Sbjct: 330 EAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMI 389
Query: 247 DMYAKCGSIEQSLEVF-YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
DM+ KCG + ++ VF + KD WN +I G A+HG+G AL +M + D
Sbjct: 390 DMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDA 449
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+T I +LSAC+H G V+EG + FS ME+D+G+ ++EHYGCM+DLLGR L++ A+ LI+
Sbjct: 450 VTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIK 509
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
+MP++P E I G+LLSAC +H+++E + +A +K + G + +N+YA GQW
Sbjct: 510 SMPWDPNEVIWGSLLSACRLHKNVEYAE-IAVNELSKLQPSNAGNYAVLSNIYAEAGQWS 568
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ + R M TG K+AGSS IE++ ++H+F G H
Sbjct: 569 DMAKARMQMKGTGSQKSAGSSWIELDEAFHEFTVGDRKH 607
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 135/324 (41%), Gaps = 49/324 (15%)
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF--NIMISGYARIGKIHSARYIFDK 132
D +A + ++ ++A ++ + ++ P T+F N ++ YA H+A +F
Sbjct: 89 DPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSA 148
Query: 133 VPAKDVVSW----------------------------------NSLILAYTNAGEMEKAG 158
+P +D ++ N+LI AY+ G A
Sbjct: 149 MPQRDSFTYSFLIKALSSSGLTPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDAS 208
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT--SVLSACAN 216
++F++M ++ ++WN+ + +R +FDEM PD TV+ +VL
Sbjct: 209 KVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEM------PDKDTVSWNTVLDGYTK 262
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
G +E + + + S + ++ Y K G IE + +F K K++ W M
Sbjct: 263 AGKMEDAFELFQCMPERNVVS----WSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIM 318
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
+ A +G A +L +M ++ V+ D + +L+AC+ +G + G + R +
Sbjct: 319 VSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIH-RYVRTRQ 377
Query: 337 VTRKLEHYGCMVDLLGRARLLDRA 360
+ R M+D+ + ++RA
Sbjct: 378 LGRSTHVCNAMIDMFCKCGCVNRA 401
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 172/451 (38%), Positives = 274/451 (60%), Gaps = 4/451 (0%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
++FP+++K+ G L G +H K GF + +V T+L+ MY C++DA+KVF +
Sbjct: 111 FTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGE 170
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
M E++++ W ++++ + CG + +L DL P +DV ++++ISGY + +AR +F
Sbjct: 171 MHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELF 230
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
DK+P +D +SWN+++ Y GE+E ++F +M +NV +WN ++ GY+++ L+ E ++
Sbjct: 231 DKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLE 290
Query: 191 LFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
F M G+V P+ T+ +VLSAC+ LG+L+ G +HVYA G N LIDMY
Sbjct: 291 SFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMY 350
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
AKCG IE ++ VF KD+ WN +I GLA+HG+ AL + M + D +TF+
Sbjct: 351 AKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFV 410
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF 369
G+LSAC+H GLV++G F M + + ++EHYGCMVDLLGRA LLD+A+ I MP
Sbjct: 411 GILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPI 470
Query: 370 EPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
EP I ALL AC +++++EI + + +++ + N + +M +N+Y G+ E+
Sbjct: 471 EPDAVIWAALLGACRLYKNVEIAELALQRLIELEPN--NPANFVMVSNIYKDLGRSEDVA 528
Query: 429 RWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
R + M DTG K G SVIE N S +F +
Sbjct: 529 RLKIAMRDTGFRKLPGCSVIECNDSVVEFYS 559
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 149/344 (43%), Gaps = 42/344 (12%)
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y R+ +I A+ + + D V+ N I + + A ++F K+ N TWN M
Sbjct: 25 YERLHQIQ-AQIVTHGLEHNDFVAPN-FITTCSRFKRIHHARKLFDKIPQPNTATWNAMF 82
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GYL++ + + V LF E+ P+ T ++ +C L + G +H AT +G
Sbjct: 83 RGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFK 142
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
SN T+LIDMY+K G +E + +VF + ++V W A+I G L G + +L
Sbjct: 143 SNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLF--- 199
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-----------FGVTRKLEHYG 345
D + D + + L+S + + ELF +M + V ++E +
Sbjct: 200 -DLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFE 258
Query: 346 CMVD------------LLG---RARLLDRAIELIEAMPFE----PTESILGALLSACVIH 386
+ D L+G + L +E + M E P + L A+LSAC
Sbjct: 259 KVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRL 318
Query: 387 QDLEIGDRV---AKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
L++G V A+ + K N L+ ++YA CG E A
Sbjct: 319 GALDMGKWVHVYAESIGYKGNLFVGNVLI---DMYAKCGVIENA 359
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 112/250 (44%), Gaps = 23/250 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ++++ +L A L + +G +H G+ G+++V L+ MY I++A
Sbjct: 301 VIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAV 360
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIG 121
VF + KDII+WN++++ A G A+ + D M + D +F ++S +G
Sbjct: 361 VVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMG 420
Query: 122 KIHSARYIFDK-------VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWN 173
+ F VP + + ++ AG +++A +KM ++ + + W
Sbjct: 421 LVKDGFLYFKSMVDHYSIVP--QIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWA 478
Query: 174 TMVTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++ G R +E+ +L E++ N +++ V+++ +LG E AR+ +
Sbjct: 479 ALL-GACRLYKNVEIAELALQRLIELEPNN-PANFVMVSNIYK---DLGRSEDVARLKIA 533
Query: 230 ATDNGLASNP 239
D G P
Sbjct: 534 MRDTGFRKLP 543
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 183/504 (36%), Positives = 289/504 (57%), Gaps = 37/504 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y
Sbjct: 116 MLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGW 175
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL---------------- 104
+ A ++F++MP++D +++NSM+D + CG + A +L DLMP
Sbjct: 176 LGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYA 235
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KD+ S+N MI GY + G+I A+Y+FD +P +DVV+W+++I
Sbjct: 236 QTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMID 295
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y G + +A +F +M ++V+++N+M+ GY++++ +E +++F +M K ++ PD
Sbjct: 296 GYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDET 355
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L +H+Y + ALIDMY+KCGSI+ ++ VF
Sbjct: 356 TLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGI 415
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L ++ +K DDITF+GLL+ACSH+GLV+EG
Sbjct: 416 ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGL 475
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 476 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNH 535
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + ++ Y + ++ +NLYAS G+W++ R R +M + I K G
Sbjct: 536 HKEFETGELVAKHLIWEAGY-NPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGC 594
Query: 446 SVIEVNGSYHKFLAGGIGHLSNLL 469
S IE++G H+F I +SN L
Sbjct: 595 SWIELDGRVHEFFVDSI-EVSNTL 617
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 43/231 (18%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ + + LF M V D +++ VL AC+ LG ++ G +IH +
Sbjct: 93 WNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLK 152
Query: 232 DNGLASNPHATTALIDM-------------------------------YAKCGSIEQSLE 260
GL S+ LI + Y KCGS E + E
Sbjct: 153 KTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARE 212
Query: 261 VF--YKSQVKDVFCWNAMILGLALHGYGY-AALKLLGEMNDSCVKADDITFIGLLSACSH 317
+F ++K++ WN+MI G A G A KL EM D D I++ ++
Sbjct: 213 LFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDK----DLISWNSMIDGYVK 268
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G +++ LF M + R + + M+D + + +A L + MP
Sbjct: 269 HGRIEDAKYLFDVMPR-----RDVVTWSTMIDGYAKLGFVHQAKTLFDQMP 314
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA---KCGSIEQSLEVFYKSQ 266
+L +C N E +IH NG NP+ TT ++ +A + +E + VF++
Sbjct: 20 LLGSCKNS---EDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRRPYXVEFARFVFHEYX 76
Query: 267 VK----------DVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGLLS 313
++ D + WNA+I H +G AL L M ++ V D + +L
Sbjct: 77 IRSFSPGGGDXEDXYLWNAVIKS---HSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLK 133
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
ACS GLV+EG ++ ++K G+ L C++ L + L A ++ + MP
Sbjct: 134 ACSRLGLVKEGMQIHGFLKKT-GLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMP 187
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 173/460 (37%), Positives = 276/460 (60%), Gaps = 2/460 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ + + + ++FP++LK+ G +++ G +H IK GF G+ +V T L+ MY +
Sbjct: 190 MKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGT 249
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA+K+F +M E++++AW SM++ + + A +L DL P +DV +NIM+SGY
Sbjct: 250 VGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEG 309
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +F ++P +DV+ WN+++ Y G +E +F++M +N+ +WN ++ GY
Sbjct: 310 GDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYA 369
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ L+ EV+ F M +V P+ T+ +VLSACA LG+L+ G +HVYA +GL N
Sbjct: 370 HNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNV 429
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ AL+DMYAKCG IE ++ VF KD+ WN +I GLA+H G AL L +M ++
Sbjct: 430 YVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNA 489
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K D ITFIG+L AC+H GLV++G F M D+ + ++EHYGCMVD+L RA L++
Sbjct: 490 GQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQ 549
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A + MP E I LL AC I++++E+ + +A + + +M +N+Y
Sbjct: 550 AXAFVRKMPVEADGVIWAGLLGACRIYKNVELAE-LALQRLIELEPKNPANYVMLSNIYG 608
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
G+WE+ R + M DTG K G S+IEVN + +F +
Sbjct: 609 DAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYS 648
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 52/314 (16%)
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
M A ++F ++ N+ WN+M GY +S+ Y EVV LF +MK +++P+ T VL
Sbjct: 148 RMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLK 207
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
+C + +L G ++H + G NP T LIDMY+ G++ + ++F + ++V
Sbjct: 208 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 267
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
W +MI G L +A +L D + D + + ++S G + E +LF M
Sbjct: 268 WTSMINGYILSADLVSARRLF----DLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMP 323
Query: 333 -----------KDFGVTRKLE-------------------------HYGCMVDLLGRARL 356
K + +E H G ++LG +
Sbjct: 324 NRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFK- 382
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV---AKMVCAKSNYLSDGELMM 413
++ P ++ L +LSAC L++G V A+ K N LM
Sbjct: 383 -----RMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALM- 436
Query: 414 FANLYASCGQWEEA 427
++YA CG E A
Sbjct: 437 --DMYAKCGIIENA 448
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 187/504 (37%), Positives = 292/504 (57%), Gaps = 37/504 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ D +SF L+LKA L G+ +HG KTG +++Q L+ +Y C
Sbjct: 113 MLENGISVDKFSFSLVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGC 172
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYA 118
+ A ++F++MP++D +++NSM+D + CG ++ A +L DLMP +K++ S+N MISGYA
Sbjct: 173 LGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYA 232
Query: 119 RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW----- 172
+ ++ A +F ++P KD++SWNSLI Y G ME A ++F M ++V+TW
Sbjct: 233 QTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMID 292
Query: 173 --------------------------NTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
N+M+ GY++++ ++E +++F +M K ++ PD
Sbjct: 293 GYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDET 352
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L +H+Y + ALIDMY+KCGSI+Q++ VF
Sbjct: 353 TLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGI 412
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L E+ ++ D ITF+G+L+ACSH+GLV+EG
Sbjct: 413 ENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGL 472
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVDLL R ++ A LIE MP EP + I L+AC
Sbjct: 473 LCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNH 532
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ EIG+ VAK + ++ Y + ++ +N+YAS G+W++ R MM + + K G
Sbjct: 533 HKEFEIGELVAKHLILQAGY-NPSSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGC 591
Query: 446 SVIEVNGSYHKFLAGGIGHLSNLL 469
S IE++G H+F I +SN L
Sbjct: 592 SWIELDGRVHEFFVDSI-EVSNTL 614
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 21/177 (11%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI---------- 255
++ ++ +C N + +IH G N + TT ++ +A
Sbjct: 15 SIIQLVGSCKNSNDV---GKIHARLITTGFIKNSNLTTKIVVAFADSRRPYLAEFARYVF 71
Query: 256 -EQSLEVFYKSQVKDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGL 311
E + F VKD F WN +I H +G AL M ++ + D +F +
Sbjct: 72 REYHVCSFAPGDVKDPFLWNLVIKS---HSHGVDPRRALLWFCLMLENGISVDKFSFSLV 128
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
L ACS G ++ G ++ + K G+ L C++ L + L A ++ + MP
Sbjct: 129 LKACSRLGFLKGGMQIHGFLRKT-GIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMP 184
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 177/461 (38%), Positives = 272/461 (59%), Gaps = 7/461 (1%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLM--LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
H D++++ L+KA LSS+ + + +H +K G YV AL+ Y DA
Sbjct: 117 HRDSFTYSFLIKA---LSSAGVAPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDA 173
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
KVFE+MP +D+++WNS + A G+++ A ++ D M KD S+N ++ GY + G +
Sbjct: 174 SKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVE 233
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
A +F +P ++VVSW++++ Y G+ME A +F KM KN++TW MV+ ++ L
Sbjct: 234 EAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGL 293
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E LF +MK +V+ D V S+L+ACA GSL G RIH Y L + H A
Sbjct: 294 VEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNA 353
Query: 245 LIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
LIDM+ KCG I ++ VF V KD WN +I G A+HG+G AL +M
Sbjct: 354 LIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCP 413
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D +T I +LSAC+H G V+EG F+ ME+D+GV ++EHYGCM+DLLGR L+ A++L
Sbjct: 414 DAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDL 473
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I++MP++P E I G+LLSAC +H+++E + +A +K + G + +++YA G+
Sbjct: 474 IKSMPWDPNEVIWGSLLSACRLHKNVEYAE-IAVNELSKLQPSNAGNYAVLSSIYAEAGK 532
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
W + + R M TG K++GSS IE++ ++H+F G H
Sbjct: 533 WSDMAKARMQMKGTGSQKSSGSSWIELDEAFHEFTVGDRKH 573
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 123/264 (46%), Gaps = 17/264 (6%)
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF--NIMISGYARIGKIHSARYIFDK 132
D +A + +L ++A ++ + + P T+F N ++ YA A +F
Sbjct: 55 DPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSA 114
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAG---EMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
+P +D +++ LI A ++AG + K +++ N ++ Y ++ + +
Sbjct: 115 MPHRDSFTYSFLIKALSSAGVAPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDAS 174
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
+F+EM + D ++ S ++A G +E R+ D L + + L+D Y
Sbjct: 175 KVFEEMP----RRDVVSWNSAMAAMVRQGEVEGARRMF----DEMLEKDTVSWNTLLDGY 226
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
K G +E++ ++F ++V W+ ++ G G A + +M + +T+
Sbjct: 227 TKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNL----VTWT 282
Query: 310 GLLSACSHAGLVQEGCELFSRMEK 333
++SAC+ GLV+E +LF++M++
Sbjct: 283 IMVSACAQNGLVEEAGKLFTQMKE 306
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 178/469 (37%), Positives = 277/469 (59%), Gaps = 11/469 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ + V D Y+FP +LKA G +GL++HG+ ++TG ++ + AL+ Y +
Sbjct: 107 MRRVAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 166
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
KVF+ +D+++WNSM+ + CG++D A L D M +D S+ MI GY +
Sbjct: 167 CRSGRKVFDH-GVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEM 225
Query: 121 -GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G + AR +FD++P +D+V WNS+I Y G M++A +F++M +NVI+W+ ++ GY
Sbjct: 226 AGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGY 285
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+R E ++ F M + +KPD + ++ACA LG+LE G +H Y + +
Sbjct: 286 VRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDV 345
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TALIDMY KCG ++ + +F K V WN MI+GL HGYG A+KL +M
Sbjct: 346 VVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETE 405
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
DD++ + +L++C+HAGLV EG +F RMEKD G+ K+EHYG ++DLLGRA +D+
Sbjct: 406 RAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 465
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMFA 415
A IE MP EPT + G+LL++C H+ +E+ +R+A + S G ++ +
Sbjct: 466 ARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDS-----GVYVLLS 520
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA G W++ R R +M+ G+ K G SVIEV+G H+F+ GG H
Sbjct: 521 NIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSH 569
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 84/208 (40%), Gaps = 22/208 (10%)
Query: 167 KNVITWNTMV-----TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
++ WNT+V RS LY F M+ V PD T +VL AC
Sbjct: 80 RHAFPWNTLVRLHAAASPRRSLLY------FSRMRRVAVAPDAYTFPAVLKACGCAPGCR 133
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G +H A GL ++ ALI Y + G +VF V+D+ WN+M+ G
Sbjct: 134 VGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVF-DHGVRDLVSWNSMVAGYV 192
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH-AGLVQEGCELFSRMEKDFGVTRK 340
G + L ++ D + D ++ ++ AG V ELF +M R
Sbjct: 193 ----GCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPD-----RD 243
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMP 368
L + M+D R +D A L E MP
Sbjct: 244 LVCWNSMIDGYARHGRMDEARVLFEEMP 271
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 184/497 (37%), Positives = 287/497 (57%), Gaps = 36/497 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y C
Sbjct: 96 MLENGVSVDKFSLSLVLKACSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGC 155
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYA 118
+ + +VF++MP++D +++NSM+D + CG ++ A +L DLMP +K++ S+N +ISGYA
Sbjct: 156 LGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKNLISWNCLISGYA 215
Query: 119 RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW----- 172
+ ++ A +F ++P KD++SWNS+I Y G +E A ++F M ++VITW
Sbjct: 216 QTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMID 275
Query: 173 --------------------------NTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
N+M+ GY++++ ++E ++LF +M K ++ PD
Sbjct: 276 GYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDET 335
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L +H Y ALIDMY+KCGSI+ ++ VF
Sbjct: 336 TLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGL 395
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K++ WNA+I GLA+HG G A +L ++ +K DDITFIG+L+ACSH+GLV+EG
Sbjct: 396 ENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGL 455
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 456 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSH 515
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E+G+ VAK + ++ Y + ++ +N+YASCG W++ R R MM + I K G
Sbjct: 516 HKEFEMGELVAKHLILQAGY-NPSSYVLLSNMYASCGMWKDVRRVRTMMKERKIQKIPGC 574
Query: 446 SVIEVNGSYHKFLAGGI 462
S IE++G H+F I
Sbjct: 575 SWIELDGRVHEFFVDSI 591
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 10/199 (5%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ + + LF M V D +++ VL AC+ LG ++ G IH +
Sbjct: 73 WNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIHGFLR 132
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
GL S+ LI +Y KCG + S +VF + +D +N+MI G G +A +
Sbjct: 133 KTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARE 192
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGL-VQEGCELFSRM-EKDFGVTRKLEHYGCMVD 349
L M + I++ L+S + V +LFS M EKD L + M+D
Sbjct: 193 LFDLMPKEM--KNLISWNCLISGYAQTSDGVNIASKLFSEMPEKD------LISWNSMID 244
Query: 350 LLGRARLLDRAIELIEAMP 368
+ ++ A +L + MP
Sbjct: 245 GYVKHGRIEDAKDLFDVMP 263
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 217 LGSLETG---ARIHVYATDNGLASNPHATTALI-----------DMYAKCGSIEQSLEVF 262
LGS +T +IH G+ N + TT ++ +A+C E +
Sbjct: 3 LGSCKTADDVNKIHARLITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVYSL 62
Query: 263 YKSQVKDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+ +D F WNA+I H +G +L L M ++ V D + +L ACS G
Sbjct: 63 PYGETEDPFLWNAVIKS---HSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLG 119
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
V+ G + + K G+ L C++ L + L + ++ + MP
Sbjct: 120 FVKAGMXIHGFLRKT-GLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMP 167
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 175/459 (38%), Positives = 268/459 (58%), Gaps = 26/459 (5%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLM--LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D++++ L+KA LS++ + + +H +K G +V AL+ Y DA K
Sbjct: 447 DSFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 503
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF++MPE+D+++WN+ + A G++ A KL D MP KD S+N ++ GY + G++ +A
Sbjct: 504 VFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 563
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
+F ++P ++VVSW++++ Y G++E A +F KM KN++TW M
Sbjct: 564 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIM----------- 612
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
MK +V+ D V S+L+ACA GSL G RIH Y L + H ALI
Sbjct: 613 --------MKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 664
Query: 247 DMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
DM+ KCG + ++ VF V KD WN++I G A+HG+G AL+L +M D
Sbjct: 665 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 724
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+T I +LSAC+H G V EG FS ME+D+G+ ++EHYGCM+DLLGR L+ A++LI+
Sbjct: 725 VTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 784
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
+MP+EP E I G+LLSAC +H+++E + +A +K + G + +N+YA GQW
Sbjct: 785 SMPWEPNEVIWGSLLSACRLHKNVEYAE-IAVNELSKLQPSNAGNYAVLSNIYAEAGQWS 843
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ + R M TG KTAGSS +E+N ++H+F G H
Sbjct: 844 DMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKH 882
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 37/259 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V D + +L A S +G +H K +V AL+ M+ C
Sbjct: 613 MKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC 672
Query: 61 IDDAFKVFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
++ A VF+ + +KD ++WNS++ FA G D A++L M + FN
Sbjct: 673 VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQ---GFN-------- 721
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNT 174
D V+ +++ A T+ G +++ F M ++ + +
Sbjct: 722 ----------------PDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGC 765
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ R L E VDL M +P+ + S+LSAC ++E A I V
Sbjct: 766 MIDLLGRGGLIKEAVDLIKSMP---WEPNEVIWGSLLSACRLHKNVEY-AEIAVNELSKL 821
Query: 235 LASNPHATTALIDMYAKCG 253
SN L ++YA+ G
Sbjct: 822 QPSNAGNYAVLSNIYAEAG 840
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/504 (35%), Positives = 289/504 (57%), Gaps = 37/504 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L GL +HG KTG C +++Q L+ +Y C
Sbjct: 116 MLENGVSVDKFSMSLVLKACSRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGC 175
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL---------------- 104
+ A ++F++MP++D +++NSM+D + G ++ A +L DLMP
Sbjct: 176 LGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYA 235
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KD+ S+N MI GY + G+I A+ +FD +P +DVV+W ++I
Sbjct: 236 QTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMID 295
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y G + +A +F +M ++V+++N+M+ GY++++ ++E +++F +M K ++ PD
Sbjct: 296 GYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDET 355
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L +H+Y + ALIDMY+KCGSI+ ++ VF
Sbjct: 356 TLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGI 415
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L ++ +K DDITF+G+L+ACSH+GLV+EG
Sbjct: 416 ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGL 475
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ ++ A LI+ MP EP + I L+AC
Sbjct: 476 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNH 535
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ V K + ++ Y + ++ +N+YAS G+W++ R R MM + I K G
Sbjct: 536 HKEFETGELVGKHLILQAGY-NPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGC 594
Query: 446 SVIEVNGSYHKFLAGGIGHLSNLL 469
S IE++G H+F I +SN L
Sbjct: 595 SWIELDGRVHEFFVDSI-EVSNTL 617
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 10/205 (4%)
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V++ WN ++ + + + + LF M V D +++ VL AC+ LG ++ G +
Sbjct: 87 VEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQ 146
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
IH GL S+ LI +Y KCG + + ++F + +D +N+MI G G
Sbjct: 147 IHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGL 206
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL-VQEGCELFSRM-EKDFGVTRKLEH 343
+A +L M + I++ ++S + V LF+ M EKD L
Sbjct: 207 IESARELFDLMPREV--KNLISWNSIISGYAQTSDGVDIASNLFAEMPEKD------LIS 258
Query: 344 YGCMVDLLGRARLLDRAIELIEAMP 368
+ M+D + ++ A +L +AMP
Sbjct: 259 WNSMIDGYVKHGRIEDAKDLFDAMP 283
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 23/180 (12%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK- 264
+++ + + E ++IH GL N + +T ++ +A S L F +
Sbjct: 14 SISPTIQLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFA--ASPRPYLAEFARL 71
Query: 265 -------------SQVKDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITF 308
+V+D F WNA+I H +G AL L M ++ V D +
Sbjct: 72 VFREYHVCSSSPGGEVEDPFLWNAVIKS---HSHGKDPKQALLLFCLMLENGVSVDKFSM 128
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+L ACS G V+ G ++ + K G+ L C++ L + L A ++ + MP
Sbjct: 129 SLVLKACSRLGFVKGGLQIHGILRKT-GLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMP 187
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/458 (39%), Positives = 274/458 (59%), Gaps = 3/458 (0%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+++F +L K+ + + G +H + GFC +Y TAL+ MY +D A K+
Sbjct: 260 PDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKL 319
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F++M ++ ++W +++ + G MD+A KL D M KD +FN MI Y ++G + SAR
Sbjct: 320 FDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSAR 379
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD++P + VVSW +I Y++ G ++ A +F M KN+ +WN M++GY +++ E
Sbjct: 380 KLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYE 439
Query: 188 VVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
+ LF EM++ +++PD +T+ SVL A A+LG+L+ G +H + L + TALI
Sbjct: 440 ALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALI 499
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
DMYAKCG I +S VF K+ WNA+I A++G AL L EMN ++I
Sbjct: 500 DMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEI 559
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
T IG+LSAC+H+GLV+EG F ME +FG+T K+EHYGCMVDLLGRA L A +L+E+
Sbjct: 560 TMIGVLSACNHSGLVEEGKRWFKAME-EFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMES 618
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426
MP+E IL + L AC +D+ +RV K K +DG +M NLYA+ +W+E
Sbjct: 619 MPYEANGIILSSFLFACGYSKDVARAERVLKEAI-KMEAWNDGNYIMLRNLYANEKRWKE 677
Query: 427 ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
A+ + +M G+ K AG S IEV+ +F+AG H
Sbjct: 678 ADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVH 715
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 10/197 (5%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAG-NVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N+M+ Y+ + Y E L+ +++ + PD T + + +CA ++ G IH +
Sbjct: 230 NSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVV 289
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G + +A TAL+DMYAK G ++ + ++F + + W A+I G G A K
Sbjct: 290 AVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGK 349
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M ++ D F ++ A G + +LF M + V+ + YG +
Sbjct: 350 LFDQM----IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSN-- 403
Query: 352 GRARLLDRAIELIEAMP 368
G LD A L +AMP
Sbjct: 404 GN---LDSARSLFDAMP 417
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/457 (39%), Positives = 274/457 (59%), Gaps = 3/457 (0%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+++F +L K+ + + G +H + GFC +Y TAL+ MY +D A K+F
Sbjct: 87 DSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLF 146
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++M ++ ++W +++ + G MD+A KL D M KD +FN MI Y ++G + SAR
Sbjct: 147 DEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARK 206
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD++P + VVSW +I Y++ G ++ A +F M KN+ +WN M++GY +++ E
Sbjct: 207 LFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEA 266
Query: 189 VDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ LF EM++ +++PD +T+ SVL A A+LG+L+ G +H + L + TALID
Sbjct: 267 LKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALID 326
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MYAKCG I +S VF K+ WNA+I A++G AL L EMN ++IT
Sbjct: 327 MYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEIT 386
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
IG+LSAC+H+GLV+EG F ME +FG+T K+EHYGCMVDLLGRA L A +L+E+M
Sbjct: 387 MIGVLSACNHSGLVEEGKRWFKAME-EFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESM 445
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P+E IL + L AC +D+ +RV K K +DG +M NLYA+ +W+EA
Sbjct: 446 PYEANGIILSSFLFACGYSKDVARAERVLKEAI-KMEAWNDGNYIMLRNLYANEKRWKEA 504
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ + +M G+ K AG S IEV+ +F+AG H
Sbjct: 505 DEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVH 541
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 10/197 (5%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAG-NVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N+M+ Y+ + Y E L+ +++ + PD T + + +CA ++ G IH +
Sbjct: 56 NSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVV 115
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G + +A TAL+DMYAK G ++ + ++F + + W A+I G G A K
Sbjct: 116 AVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGK 175
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M ++ D F ++ A G + +LF M + V+ + YG +
Sbjct: 176 LFDQM----IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSN-- 229
Query: 352 GRARLLDRAIELIEAMP 368
G LD A L +AMP
Sbjct: 230 GN---LDSARSLFDAMP 243
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 178/466 (38%), Positives = 270/466 (57%), Gaps = 8/466 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D Y+FP +LKA + +GL +H + ++TG G ++ + AL+ Y +
Sbjct: 103 MRRAAVEPDAYTFPAVLKAC---ACGVLGLPVHAEAVRTGMDGDLFTRNALVSFYCRIGD 159
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-R 119
KVF+ +D+++WNSM+ + +CG+++ A +L D MPL+D S+ MI Y R
Sbjct: 160 CRSGRKVFDH-GARDLVSWNSMVAGYVACGELELAQELFDGMPLRDAFSWATMIDAYGKR 218
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G + AR +FD+ P +D+V W S+I Y G M++A +F++M +NVI+W+ +V GY
Sbjct: 219 SGGVDRARELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGY 278
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+R E ++LF M +KPD + +ACA LG+LE G +H Y + +
Sbjct: 279 VRCGEPSEALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDV 338
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TALIDMY KCG ++ +F K V WN MI+GL H G A+KL +M
Sbjct: 339 VVQTALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAE 398
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
DD++ + +L+AC+HAGL+ EG +F RM KDFG+ K+EHYG +VDLLGRA LD
Sbjct: 399 GAPIDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDH 458
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLY 418
A IE MP EPT + G+LL+AC H+ +E+ + V ++ ++ G ++ +N+Y
Sbjct: 459 ARHAIETMPMEPTPELWGSLLAACRSHRCVELAELSVERLASLGADDF--GVYVLLSNIY 516
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
A G W+ R R +M+ G+ K G SVIEV+G H+F+ GG H
Sbjct: 517 ADEGMWDGVFRIRRLMSAEGMKKDIGRSVIEVDGQTHEFVNGGSSH 562
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 178/469 (37%), Positives = 275/469 (58%), Gaps = 11/469 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D Y+FP +LKA G +GL++HG+ ++TG ++ + AL+ Y +
Sbjct: 107 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 166
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
KVF+ +D+++WNSM+ + CG++D A L D M +D S+ MI GY +
Sbjct: 167 CRSGRKVFDH-GVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEM 225
Query: 121 -GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G + AR +FD++P +D+V WNS+I Y G M++A +F++M +NVI+W+ ++ GY
Sbjct: 226 AGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGY 285
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+R E ++ F M +KPD + ++ACA LG+LE G +H Y + +
Sbjct: 286 VRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDV 345
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TALIDMY KCG ++ + +F K V WN MI+GL HGYG A+KL +M
Sbjct: 346 VVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETE 405
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
DD++ + +L++C+HAGLV EG +F RMEKD G+ K+EHYG ++DLLGRA +D+
Sbjct: 406 RAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 465
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMFA 415
A IE MP EPT + G+LL++C H+ +E+ +R+A + S G ++ +
Sbjct: 466 ARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDS-----GVYVLLS 520
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA G W++ R R +M+ G+ K G SVIEV+G H+F+ GG H
Sbjct: 521 NIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSH 569
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 84/208 (40%), Gaps = 22/208 (10%)
Query: 167 KNVITWNTMV-----TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
++ WNT+V RS LY F M+ V PD T +VL AC
Sbjct: 80 RHAFPWNTLVRLHAAASPRRSLLY------FSRMRRAAVAPDAYTFPAVLKACGCAPGCR 133
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G +H A GL ++ ALI Y + G +VF V+D+ WN+M+ G
Sbjct: 134 VGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVF-DHGVRDLVSWNSMVAGYV 192
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH-AGLVQEGCELFSRMEKDFGVTRK 340
G + L ++ D + D ++ ++ AG V ELF +M R
Sbjct: 193 ----GCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPD-----RD 243
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMP 368
L + M+D R +D A L E MP
Sbjct: 244 LVCWNSMIDGYARHGRMDEARVLFEEMP 271
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 188/508 (37%), Positives = 284/508 (55%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP LLK+ L +S GL +HG +K G+ +YV T+L+ MY
Sbjct: 54 MISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNER 113
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF++ +D++++ +++ +AS G ++ A + D +P+KDV S+N MISGY
Sbjct: 114 LEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVET 173
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F ++ P + V SW
Sbjct: 174 GNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIV 233
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GEME A +F + K+VI+WN ++ GY LY E + LF EM
Sbjct: 234 NALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGES 293
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA+LG+++ G IHVY G+ + T+LIDMY+KCG IE +
Sbjct: 294 PNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAH 353
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF K + WNAMI G A+HG AA + M + +K DDITF+GLLSACSHAG
Sbjct: 354 QVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAG 413
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M ++ +T KLEHYGCM+DLLG + L A E+I M EP I +L
Sbjct: 414 MLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSL 473
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC +H ++E+G++ A+ + K + G ++ +N+YA+ G+W E R R ++ND G+
Sbjct: 474 LKACKMHGNVELGEKFAQNL-FKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGM 532
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 533 KKVPGCSSIEIDSVVHEFIIGDKFHPRN 560
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 32/242 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F+ + N++ WNTM G+ S + + L+ M + + P+ T +L +CA L +
Sbjct: 19 VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ------------- 266
+ G +IH + G + + T+LI MY + +E + +VF +S
Sbjct: 79 SKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTG 138
Query: 267 ------------------VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
VKDV WNAMI G G AL+L EM + V+ D+ T
Sbjct: 139 YASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ ++SA + +G ++ G ++ S + D G L+ ++D + ++ A L +
Sbjct: 199 VTVISASARSGSIELGRQVHSWI-ADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLS 257
Query: 369 FE 370
++
Sbjct: 258 YK 259
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 178/469 (37%), Positives = 275/469 (58%), Gaps = 11/469 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D Y+FP +LKA G +GL++HG+ ++TG ++ + AL+ Y +
Sbjct: 1 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
KVF+ +D+++WNSM+ + CG++D A L D M +D S+ MI GY +
Sbjct: 61 CRSGRKVFDH-GVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEM 119
Query: 121 -GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G + AR +FD++P +D+V WNS+I Y G M++A +F++M +NVI+W+ ++ GY
Sbjct: 120 AGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGY 179
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+R E ++ F M +KPD + ++ACA LG+LE G +H Y + +
Sbjct: 180 VRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDV 239
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TALIDMY KCG ++ + +F K V WN MI+GL HGYG A+KL +M
Sbjct: 240 VVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETE 299
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
DD++ + +L++C+HAGLV EG +F RMEKD G+ K+EHYG ++DLLGRA +D+
Sbjct: 300 RAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 359
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMFA 415
A IE MP EPT + G+LL++C H+ +E+ +R+A + S G ++ +
Sbjct: 360 ARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDS-----GVYVLLS 414
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA G W++ R R +M+ G+ K G SVIEV+G H+F+ GG H
Sbjct: 415 NIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSH 463
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 183/507 (36%), Positives = 284/507 (56%), Gaps = 47/507 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ E + + Y+FP L+KAA +SS +G LHG +K+ V+V +L+ Y S
Sbjct: 122 VSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGD 181
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV------------- 107
+D A KVF + EKD+++WNSM++ F G D A++L M +DV
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241
Query: 108 --------------------------TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
T N M+ Y + G I A+ +FD + KD V+W
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNV 200
+++ Y + + E A E+ M K+++ WN +++ Y ++ E + +F E++ N+
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
K + +T+ S LSACA +G+LE G IH Y +G+ N H T+ALI MY+KCG +E+S E
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF + +DVF W+AMI GLA+HG G A+ + +M ++ VK + +TF + ACSH GL
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 481
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V E LF +ME ++G+ + +HY C+VD+LGR+ L++A++ IEAMP P+ S+ GALL
Sbjct: 482 VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYL---SDGELMMFANLYASCGQWEEANRWRNMMNDT 437
AC IH +L + A+M C + L +DG ++ +N+YA G+WE + R M T
Sbjct: 542 GACKIHANLNL----AEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVT 597
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S IE++G H+FL+G H
Sbjct: 598 GLKKEPGCSSIEIDGMIHEFLSGDNAH 624
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 185/394 (46%), Gaps = 56/394 (14%)
Query: 23 LSSSCIGL----MLHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDI 76
L C+ L HG I+TG Y + L M S ++ A KVF+++P+ +
Sbjct: 36 LIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNS 95
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPL-------KDVTSFNIMISGYARIGKIHSARYI 129
AWN+++ A+AS D + + + + + +F +I A + + + +
Sbjct: 96 FAWNTLIRAYASGP--DPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153
Query: 130 ----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
DV NSLI Y + G+++ A ++F + K+V++WN+M+ G+++
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ ++LF +M++ +VK ++T+ VLSACA + +LE G ++ Y +N + N A+
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAM 273
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL------------ 293
+DMY KCGSIE + +F + KD W M+ G A+ AA ++L
Sbjct: 274 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWN 333
Query: 294 ---------GEMNDSCV-----------KADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G+ N++ + K + IT + LSAC+ G ++ G + S ++K
Sbjct: 334 ALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKK 393
Query: 334 -----DFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
+F VT L H L ++R + ++E
Sbjct: 394 HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE 427
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 3/250 (1%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR-SQLYIEVVDLFDEMKAGNVKPDYL 205
A ++ +E A ++F ++ N WNT++ Y + + D + P+
Sbjct: 73 ALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKY 132
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T ++ A A + SL G +H A + + S+ +LI Y CG ++ + +VF
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ KDV WN+MI G G AL+L +M VKA +T +G+LSAC+ ++ G
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
++ S +E++ V L M+D+ + ++ A L +AM E +L I
Sbjct: 253 QVCSYIEEN-RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAI 310
Query: 386 HQDLEIGDRV 395
+D E V
Sbjct: 311 SEDYEAAREV 320
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 176/471 (37%), Positives = 280/471 (59%), Gaps = 39/471 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V +++F L+KA ++S G +HG K GF HV+VQTAL+ YG+
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGN--- 57
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
G++ A ++ D M +DV ++ MIS +AR
Sbjct: 58 ----------------------------AGKIVEARRVFDEMSERDVFAWTTMISVHART 89
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + SAR +FD++P ++ SWN++I Y+ +E A +F +M +++I+W TM+ Y
Sbjct: 90 GDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYS 149
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+++ + E + +F+EM+ + PD +T+ +++SACA+LG+L+ G IH+YA + G + +
Sbjct: 150 QNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVY 209
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ALIDMYAKCGS+++SL VF+K + K++FCWN++I GLA+HGY AL + M
Sbjct: 210 IGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREK 269
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+K + +TFI +L AC+HAGLV+EG + F M +DF + ++EHYGCMVDLLG+A LL+ A
Sbjct: 270 IKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDA 329
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL---SDGELMMFANL 417
+EL+ +M EP I GALL C +H++L+I A++ +S L + G + N+
Sbjct: 330 LELVRSMRMEPNSVIWGALLGGCKLHRNLKI----AQVAVNESKVLEPNNSGYYTLLVNM 385
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTA-GSSVIEVNGSYHKFLAGGIGHLSN 467
YA +W E R M + G+ KT+ GSS IE++ H+F A HL++
Sbjct: 386 YAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIHQFAASDKSHLAS 436
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 176/457 (38%), Positives = 272/457 (59%), Gaps = 1/457 (0%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
DN++ P ++K L G +HG +K GF V+VQ +L+ MY ID A KV
Sbjct: 110 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 169
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F+ M +KD++ WNS++D +A CG++D A++L + MP +D S+ +++ G ++ GK+ SAR
Sbjct: 170 FDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESAR 229
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD++P +++VSWN++I Y +G+ + A E+F +M + +++TWN M+ GY + +++
Sbjct: 230 KLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMD 289
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
V +F M +P + T+ SVLSA + L L G IH Y NG + T+LI+
Sbjct: 290 AVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIE 349
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MYAKCG IE +L VF Q K V W A+I+GL +HG AL L EM + +K + I
Sbjct: 350 MYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAII 409
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
FIG+L+AC+HAGLV +G + F M ++ + LEHYGC+VD+L RA L+ A IE M
Sbjct: 410 FIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENM 469
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P P + I +LL H ++IG+ A+ V + + G ++ +N+YA+ G WE+
Sbjct: 470 PISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPE-TIGCYILLSNMYAASGMWEKV 528
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R MM G K G S +E G+ H+F+ G I H
Sbjct: 529 SHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISH 565
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 107/212 (50%), Gaps = 10/212 (4%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F ++ +++I WNT++ Y+ +Q + + LF E+ PD T+ V+ CA
Sbjct: 66 ARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCAR 124
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
LG ++ G +IH A G S+ +L++MY+KCG I+ + +VF KDV WN++
Sbjct: 125 LGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSL 184
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I G A G AL+L EM + D ++ L+ S G V+ +LF +M
Sbjct: 185 IDGYARCGEIDIALQLFEEMPER----DAFSWTVLVDGLSKCGKVESARKLFDQMP---- 236
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
R L + M++ ++ D A+EL MP
Sbjct: 237 -CRNLVSWNAMINGYMKSGDFDSALELFYQMP 267
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M +LG + + +L A L+ G +H K GF + T+L++MY C
Sbjct: 297 MLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGC 356
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
I+ A VF + +K + W +++ G +HA+ L M + I+ G
Sbjct: 357 IESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNA 416
Query: 118 -ARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLV-KNVI 170
G + R FD + + + + L+ AG +E+A + M + N +
Sbjct: 417 CNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKV 476
Query: 171 TWNTMVTG 178
W +++ G
Sbjct: 477 IWMSLLGG 484
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 181/504 (35%), Positives = 280/504 (55%), Gaps = 42/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D Y++P LLK ++ G LH +K GF +V+VQ AL+ +Y
Sbjct: 110 MLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGE 169
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------------------ 102
+ A VF++ + D++ WN M+ + Q D +MKL D M
Sbjct: 170 VSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSA 229
Query: 103 --PLKDVTS-------------------FNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
LKD+ N +I YA G + +A IFD + ++DV+SW
Sbjct: 230 CSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISW 289
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+++ +TN G++ A F KM ++ ++W M+ GYL+ + EV+ LF EM+A N+K
Sbjct: 290 TAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIK 349
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ S+L+ACA+LG+LE G I Y N + + ALIDMY CG++E+++ +
Sbjct: 350 PDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRI 409
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F +D W A+I GLA++GYG AL + +M + + D++T IG+L AC+H+G+V
Sbjct: 410 FNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMV 469
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+G + F+RM G+ + HYGCMVDLLGRA L A E+I+ MP +P + G+LL
Sbjct: 470 DKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLG 529
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDTGIV 440
AC +H+D E+ + A+ + +G + ++ N+YA+C +WE+ + R +M D GI
Sbjct: 530 ACRVHRDEEMAEMAAQQILELEP--ENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIK 587
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
KT G S+IE+NGS H+F+AG H
Sbjct: 588 KTPGCSLIEMNGSVHEFVAGDQVH 611
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 182/380 (47%), Gaps = 46/380 (12%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+H QTI TG + V ++ L ++ A VF+ MP + WN+M+ ++
Sbjct: 38 IHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRV 97
Query: 90 GQMDHAM----KLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP----AKDVVSW 141
G + A+ ++++ + D ++ ++ + R + R + D + + +V
Sbjct: 98 GCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQ 157
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ +GE+ A +F + +V+TWN M++GY RS+ + E + LFDEM+ V
Sbjct: 158 NALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVL 217
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P +T+ SVLSAC+ L L G R+H Y D + ALIDMYA CG ++ +L +
Sbjct: 218 PSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGI 277
Query: 262 FYKSQVKDVFCWNAMILGLALHGY------------------------GY-------AAL 290
F + +DV W A++ G G GY L
Sbjct: 278 FDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVL 337
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY--GCMV 348
L EM + +K D+ T + +L+AC+H G ++ G + + ++K+ K++ + ++
Sbjct: 338 SLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKN---EIKIDSFVGNALI 394
Query: 349 DLLGRARLLDRAIELIEAMP 368
D+ +++AI + AMP
Sbjct: 395 DMYFNCGNVEKAIRIFNAMP 414
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 273/471 (57%), Gaps = 14/471 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ DNY+ P +LKA + G +HGQ IK G VYV L++MY I A
Sbjct: 120 GIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSA 179
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISGYARI 120
KVF+ P++D+++W +M+ + G + L M D + I++S AR+
Sbjct: 180 RKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARL 239
Query: 121 G------KIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
G K+H RYI DV N+L+ Y G+ A ++F++M VKNV++WN
Sbjct: 240 GDLRLGRKLH--RYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWN 297
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
+M++G + + E + +F +M+ VKPD +T+ +VL++CANLG LE G +H Y N
Sbjct: 298 SMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN 357
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
+ ++ AL+DMYAKCGSI+Q+ VF KDV+ + AMI+GLA+HG G AL L
Sbjct: 358 QIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLF 417
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
EM ++ D++TF+G+L+ACSH GLV+EG + F M + + +LEHYGCMVDLLGR
Sbjct: 418 SEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGR 477
Query: 354 ARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
A L++ A E I MP EP +LGALL AC IH +E+G+ V K + K DG ++
Sbjct: 478 AGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKI-EKIEPRKDGAYVL 536
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+Y+S +W +A + R M + + KT G S IE++G H+F G H
Sbjct: 537 MSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSH 587
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 149/333 (44%), Gaps = 11/333 (3%)
Query: 120 IGKIHSARYIFDKVPAKD----VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ +IH++ I +P+ D + + S + A + + A + ++ N+ +N +
Sbjct: 38 LKQIHAS--IIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAI 95
Query: 176 VTGYLRSQL-YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
+ G S IE + ++ +M + + PD T+ VL ACA ++ G +H A G
Sbjct: 96 IRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMG 155
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
LAS+ + + L+ MYA C I + +VF S +D+ W MI G G+ + L
Sbjct: 156 LASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFF 215
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
EM ++AD +T + +LS+C+ G ++ G +L + ++ V + +VD+ +
Sbjct: 216 EMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKC 275
Query: 355 RLLDRAIELIEAMPFEPT---ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
+ A ++ + MP + S++ L + L + ++ ++ + L
Sbjct: 276 GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 335
Query: 412 MMFANL-YASCGQWEEANRWRNMMNDTGIVKTA 443
ANL G+W A RN + G + A
Sbjct: 336 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNA 368
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 183/508 (36%), Positives = 282/508 (55%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP LLK+ + G +HG +K G+ +YV T+L+ MY
Sbjct: 57 MISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGR 116
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF++ +D++++ +++ +AS G + A ++ D +P+KDV S+N MISGYA
Sbjct: 117 LEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAET 176
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F ++ P + V SW
Sbjct: 177 GSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIV 236
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ G++E A +F+ + K+V++WNT++ GY LY E + LF EM
Sbjct: 237 NALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 296
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA+LG+++ G IHVY + + P T+LIDMYAKCG IE +
Sbjct: 297 PNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAH 356
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF K + WNAMI G A+HG A L M + ++ DDITF+GLLSACSH+G
Sbjct: 357 QVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSG 416
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
+ G +F M +D+ +T KLEHYGCM+DLLG + L A E+I+ MP EP I +L
Sbjct: 417 KLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSL 476
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC H +LE+ + A+ + K + G ++ +N+YA+ G+W+E + R ++N G+
Sbjct: 477 LKACRRHGNLELAESFARNL-MKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGM 535
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 536 KKVPGCSSIEIDSEVHEFIVGDKLHPRN 563
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 170/344 (49%), Gaps = 40/344 (11%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------IDLMP--------LK---- 105
A VF + E + + WN+ML +A A+KL + L+P LK
Sbjct: 19 AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78
Query: 106 ---------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
D+ +IS YA+ G++ A +FD+ +DVVS+ +L
Sbjct: 79 SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I Y ++G + A EMF ++ VK+V++WN M++GY + Y E ++LF EM NV+PD
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T+ +VLSACA S+E G ++H + D+G SN ALID+Y+KCG +E + +F
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEG 258
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
KDV WN +I G AL L EM S +D+T + +L AC+H G + G
Sbjct: 259 LSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIG 318
Query: 325 CELFSRMEKDF-GVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ ++K VT ++D+ + ++ A ++ +M
Sbjct: 319 RWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSM 362
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/433 (39%), Positives = 257/433 (59%), Gaps = 2/433 (0%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
H +K G +V AL+ Y + + DA KVF++M +D+++WN+ + A G++
Sbjct: 152 HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 211
Query: 93 DHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152
D A + D MP KD S+N M+ GYA+ G+ A +F ++P ++VVSW++++ AY G
Sbjct: 212 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKG 271
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+ME A +F KM KN++TW MV+ + L E LF EM ++ D + V S+L+
Sbjct: 272 DMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILA 331
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVF 271
ACA GSL G RIH + L+ + AL+DM+ KCG + ++ +F V KD+
Sbjct: 332 ACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLV 391
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN +I G A+HG G AL+L +M D +T I +LSAC+H GLV+EG F+ M
Sbjct: 392 SWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANM 451
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
E D+G+ ++EHYGCMVDLLGR L+ A+++I+ MP+EP E I G+LLSAC +H+++E
Sbjct: 452 ETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEY 511
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
+ +A + S G + +N+YA G+W + + R M TG KTAGSS IE+N
Sbjct: 512 AE-LAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 570
Query: 452 GSYHKFLAGGIGH 464
++H+F G H
Sbjct: 571 EAFHEFTVGDRKH 583
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 98/224 (43%), Gaps = 15/224 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + + D + +L A S +G +H + V AL+ M+ C
Sbjct: 314 MMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGC 373
Query: 61 IDDAFKVFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMIS 115
++ A +F+ ++ EKD+++WN ++ FA G + A++L M + D + ++S
Sbjct: 374 VNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLS 433
Query: 116 GYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
+G + R F + + + ++ G +++A +M K+M + N
Sbjct: 434 ACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNE 493
Query: 170 ITWNTMVTGYLRSQLYIEVVDL-FDEMKAGNVKPDYLTVTSVLS 212
+ W ++++ R +E +L +E+ N++P +VLS
Sbjct: 494 VIWGSLLSA-CRLHKNVEYAELAVNEL--SNLQPSSAGNYAVLS 534
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/433 (39%), Positives = 257/433 (59%), Gaps = 2/433 (0%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
H +K G +V AL+ Y + + DA KVF++M +D+++WN+ + A G++
Sbjct: 224 HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 283
Query: 93 DHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152
D A + D MP KD S+N M+ GYA+ G+ A +F ++P ++VVSW++++ AY G
Sbjct: 284 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKG 343
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+ME A +F KM KN++TW MV+ + L E LF EM ++ D + V S+L+
Sbjct: 344 DMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILA 403
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVF 271
ACA GSL G RIH + L+ + AL+DM+ KCG + ++ +F V KD+
Sbjct: 404 ACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLV 463
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN +I G A+HG G AL+L +M D +T I +LSAC+H GLV+EG F+ M
Sbjct: 464 SWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANM 523
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
E D+G+ ++EHYGCMVDLLGR L+ A+++I+ MP+EP E I G+LLSAC +H+++E
Sbjct: 524 ETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEY 583
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
+ +A + S G + +N+YA G+W + + R M TG KTAGSS IE+N
Sbjct: 584 AE-LAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 642
Query: 452 GSYHKFLAGGIGH 464
++H+F G H
Sbjct: 643 EAFHEFTVGDRKH 655
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 98/224 (43%), Gaps = 15/224 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + + D + +L A S +G +H + V AL+ M+ C
Sbjct: 386 MMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGC 445
Query: 61 IDDAFKVFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMIS 115
++ A +F+ ++ EKD+++WN ++ FA G + A++L M + D + ++S
Sbjct: 446 VNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLS 505
Query: 116 GYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
+G + R F + + + ++ G +++A +M K+M + N
Sbjct: 506 ACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNE 565
Query: 170 ITWNTMVTGYLRSQLYIEVVDL-FDEMKAGNVKPDYLTVTSVLS 212
+ W ++++ R +E +L +E+ N++P +VLS
Sbjct: 566 VIWGSLLSA-CRLHKNVEYAELAVNEL--SNLQPSSAGNYAVLS 606
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 180/493 (36%), Positives = 283/493 (57%), Gaps = 36/493 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +SF L LKA L G +HG IKTG +++Q L+ +Y C
Sbjct: 119 MLENGVPVDKFSFSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGC 178
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA------------------------- 95
+ A +VF++MP++D +++NSM+D + CG ++ A
Sbjct: 179 LGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYA 238
Query: 96 ---------MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KL D MP KD+ S+N MI GY + G+I A+ +FD +P +DVV+W +I
Sbjct: 239 QRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMID 298
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y G + +A +F +M ++V+ +N+M++G ++++ ++E +++F+ M K ++ PD
Sbjct: 299 GYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDET 358
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
++ VLSA A LG L +H+Y + S+ ALIDMY+KCGSI+ ++ VF
Sbjct: 359 SLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGI 418
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L ++ +K D ITF+G+L+ACSH+GLV+EG
Sbjct: 419 ESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGL 478
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 479 LCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSH 538
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + ++ Y + ++ +N+YAS G W++ R R MM + I K G
Sbjct: 539 HKEFETGELVAKHLILQAGY-NPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGC 597
Query: 446 SVIEVNGSYHKFL 458
S IE++G H+FL
Sbjct: 598 SWIELDGRVHEFL 610
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V++ WN ++ + + + L M V D + + L AC+ LG ++ G +
Sbjct: 90 VEDPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQ 149
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF----------YKSQV-------- 267
+H + G S+ LI +Y KCG + + +VF Y S +
Sbjct: 150 VHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGL 209
Query: 268 ---------------KDVFCWNAMILGLALHGYGY-AALKLLGEMNDSCVKADDITFIGL 311
+++ WN+MI G A G A KL EM + D I++ +
Sbjct: 210 VESAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEK----DLISWNSM 265
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ G +++ LF M + VT + M+D G+ L+ A L + MP
Sbjct: 266 IGGYVKHGRIEDAKGLFDVMPRRDVVT-----WAIMIDGYGKLGLVHEAKTLFDQMP 317
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 26/164 (15%)
Query: 225 RIHVYATDNGLASNPHATTALI-----------------DMYAKCGSIEQSLEVFYKSQV 267
++H GL NP TT ++ +A+C + V +V
Sbjct: 33 KLHARLITTGLIKNPDLTTRIVLAFASASASASSRRPFLAEFARC--VFHEHHVSSSGEV 90
Query: 268 KDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+D F WN +I H +G AL LL M ++ V D +F L ACS G V+EG
Sbjct: 91 EDPFLWNVVIKS---HSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEG 147
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++ + K G L C++ L + L A ++ + MP
Sbjct: 148 TQVHGFLIKT-GTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMP 190
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/457 (38%), Positives = 267/457 (58%), Gaps = 3/457 (0%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
DN++F +L K + + GL HG +K GFC +YV TAL+ MY + A KVF
Sbjct: 101 DNFTFTVLAKCCALRMAVWEGLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVF 160
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
MP++ +++W +++ + G M +A L LMP +D +FN++I GY ++G + SAR
Sbjct: 161 NDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARS 220
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD++P ++V+SW S+I Y N G++ A +F M KN+++WN M+ GY +++ E
Sbjct: 221 LFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEA 280
Query: 189 VDLFDEMKAGNV-KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ LF E+++ V +P+ +TV S+L A A LG+LE G +H + L + + T+L+D
Sbjct: 281 LKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVD 340
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY KCG I ++ +VF + K+ WNA+I G A++G AL+ EM +K +DIT
Sbjct: 341 MYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDIT 400
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
G+LSACSH GLV+EG F M + G++ K+EHYGC+VDLLGRA LD A LI++M
Sbjct: 401 MTGVLSACSHGGLVEEGKGQFKAMIES-GLSPKIEHYGCLVDLLGRAGCLDEAENLIKSM 459
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
PFE IL + AC D+ RV ++G +M NLYA +W++
Sbjct: 460 PFEANGIILSSFSFACGFSNDVTRAQRVLNQA-VNMEPGNNGIYVMMRNLYAMEERWKDV 518
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+M G K GSS IEV+ +F++GGI H
Sbjct: 519 KEINGLMRRRGAKKEVGSSAIEVDSRVSEFISGGIAH 555
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 27/284 (9%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N+M+ ++ + + L+ +++ PD T T + CA ++ G H +
Sbjct: 70 NSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETHGHVV 129
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA---------- 281
G + + +TAL+DMYAK G++ + +VF + + W A+I G
Sbjct: 130 KIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWF 189
Query: 282 ----LHGYGYAALKLL-------GEMNDSCVKADDITFIGLLSACSHA-GLVQEGCELFS 329
+ G AA LL G+M + D++ ++S S G G L +
Sbjct: 190 LFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSA 249
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP----FEPTESILGALLSACVI 385
R D + L + M+ + + A++L + FEP E + ++L A
Sbjct: 250 RFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIAT 309
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
LE+G+ V + V K + ++Y CG+ +A +
Sbjct: 310 LGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARK 353
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/508 (36%), Positives = 285/508 (56%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP LLK+ + G +HG +K G +YV T+L+ MY
Sbjct: 82 MISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 141
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF++ P +D++++ +++ +AS G +++A K+ D +P+KDV S+N MISGYA
Sbjct: 142 LEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAET 201
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F + P + V SW
Sbjct: 202 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIV 261
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GE+E A +F+ + K+VI+WNT++ GY LY E + LF EM
Sbjct: 262 NALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 321
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA+LG+++ G IHVY G+A+ T+LIDMYAKCG IE +
Sbjct: 322 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAH 381
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF K + WNAMI G A+HG A+ + M + ++ DDITF+GLLSACSH+G
Sbjct: 382 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSG 441
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M +D+ +T KLEHYGCM+DLLG + L A E+I M EP I +L
Sbjct: 442 MLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 501
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC +H ++E+G+ A+ + K + G ++ +N+YA+ G+W E R ++ND G+
Sbjct: 502 LKACKMHGNVELGESFAQNLI-KIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGM 560
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 561 KKVPGCSSIEIDSVVHEFIIGDKFHPRN 588
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 32/242 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F+ + N++ WNTM G+ S + + L+ M + + P+ T +L +CA +
Sbjct: 47 VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 106
Query: 220 LETGARIHVYA-------------------TDNG--------LASNPH----ATTALIDM 248
+ G +IH + NG +PH + TALI
Sbjct: 107 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKG 166
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YA G IE + ++F + VKDV WNAMI G A G AL+L +M + V+ D+ T
Sbjct: 167 YASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 226
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ ++SAC+ +G ++ G ++ S ++ D G L+ ++DL + L+ A L E +P
Sbjct: 227 VTVVSACAQSGSIELGRQVHSWID-DHGFGSNLKIVNALIDLYSKCGELETACGLFEGLP 285
Query: 369 FE 370
++
Sbjct: 286 YK 287
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 220 LETGARIHVYATDNGLASNPHATTALID---MYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L++ IH GL + +A + LI+ + + ++ VF Q ++ WN M
Sbjct: 3 LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
G AL +ALKL M + + TF LL +C+ + +EG ++ + K
Sbjct: 63 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLK--- 119
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIE 362
GC +DL L+ ++
Sbjct: 120 -------LGCDLDLYVHTSLISMYVQ 138
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 183/504 (36%), Positives = 277/504 (54%), Gaps = 42/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D Y+FP L K + G LHG +K G +V+V TAL++MY
Sbjct: 109 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQ 168
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI--------------------- 99
+D A VF+ P+ D+I WN ++ A+ G+ + + +L
Sbjct: 169 LDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 228
Query: 100 -----DLMPLKDVTSF-------------NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
DL K V S+ N MI YA G++ SA IF + +D++SW
Sbjct: 229 CSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISW 288
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+++ +TN GE++ A F KM K+ ++W M+ GY+RS + E ++LF M+A NVK
Sbjct: 289 TTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 348
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ SVL+ACA+LG+LE G I Y N + ++ ALIDMY KCG ++++ +
Sbjct: 349 PDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESI 408
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + +D F W AMI+GLA++G+G AL + M + + D+IT+IG+LSAC+H GLV
Sbjct: 409 FREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 468
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+G + F RM G+ + HYGC+VDLL RA L A E+IE MP + + GALL+
Sbjct: 469 DKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 528
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDTGIV 440
C ++++ ++ + V K + +G + ++ N+YA+C +W + R MM D GI
Sbjct: 529 GCRVYRESDMAEMVVKQILELEP--DNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIK 586
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
KT G S+IE+NG H+F+AG H
Sbjct: 587 KTPGCSLIEMNGRVHEFVAGDRSH 610
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 165/380 (43%), Gaps = 48/380 (12%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM-----YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF 86
+H Q IK G + +Q ++ YG + A ++F+++PE ++ WN+M+ +
Sbjct: 37 VHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQY---ARRLFDEIPEPNLFIWNTMIRGY 93
Query: 87 ASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSARYIFDKVPAK----DV 138
+ + L M + D +F + G+ R + R + V +V
Sbjct: 94 SRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNV 153
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+L+ Y G+++ A +F +VITWN +++ Y + + E LF M+
Sbjct: 154 FVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDK 213
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
V P +T+ VLSAC+ L L TG ++H Y + + SN A+IDMYA CG ++ +
Sbjct: 214 QVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSA 273
Query: 259 LEVFY-------------------------------KSQVKDVFCWNAMILGLALHGYGY 287
L +F K KD W AMI G
Sbjct: 274 LGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK 333
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL+L M + VK D+ T + +L+AC+H G ++ G + + ++++ + L +
Sbjct: 334 EALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRN-KIKNDLFVRNAL 392
Query: 348 VDLLGRARLLDRAIELIEAM 367
+D+ + +D+A + M
Sbjct: 393 IDMYFKCGDVDKAESIFREM 412
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 182/505 (36%), Positives = 282/505 (55%), Gaps = 47/505 (9%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E + + Y+FP L+KAA +SS +G LHG IK+ V+V +L+ Y S +D
Sbjct: 126 ESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLD 185
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV--------------- 107
A KVF + EKD+++WNSM++ F G D A++L M +DV
Sbjct: 186 SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 245
Query: 108 ------------------------TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
T N M+ Y + G I A+ +FD + KD V+W +
Sbjct: 246 KIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTT 305
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKP 202
++ Y + + E A E+ M K+++ WN +++ Y ++ E + +F E++ N+K
Sbjct: 306 MLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKL 365
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+ +T+ S LSACA +G+LE G IH Y NG+ N + T+ALI MY+KCG +E++ EVF
Sbjct: 366 NQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVF 425
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ +DVF W+AMI GLA+HG G A+ + +M ++ VK + +TF + ACSH GLV
Sbjct: 426 NSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 485
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
E LF +ME +G+ + +HY C+VD+LGR+ L++A++ IEAMP P+ S+ GALL A
Sbjct: 486 EAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 545
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYL---SDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
C IH +L + A+M C + L +DG ++ +N+YA G+W+ + R M TG+
Sbjct: 546 CKIHANLSL----AEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGL 601
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGH 464
K G S IE++G H+FL+G H
Sbjct: 602 KKEPGCSSIEIDGMIHEFLSGDNAH 626
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/474 (25%), Positives = 207/474 (43%), Gaps = 78/474 (16%)
Query: 33 HGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
H I+TG Y + L + S ++ A KVF+++P+ + WN+++ A+AS
Sbjct: 51 HAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGP 110
Query: 91 Q--------MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI----FDKVPAKDV 138
+D P K +F +I A + + + + DV
Sbjct: 111 DPVCSIWAFLDMVSSESQCYPNK--YTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDV 168
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y + G+++ A ++F + K+V++WN+M+ G+++ + ++LF +M++
Sbjct: 169 FVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESE 228
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+VK ++T+ VLSACA + LE G R+ Y +N + N A++DMY KCGSIE +
Sbjct: 229 DVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDA 288
Query: 259 LEVF----YKSQV---------------------------KDVFCWNAMILGLALHGYGY 287
+F K V KD+ WNA+I +G
Sbjct: 289 KRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPN 348
Query: 288 AALKLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK-----DFGVTRKL 341
AL + E+ +K + IT + LSAC+ G ++ G + S ++K +F VT L
Sbjct: 349 EALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSAL 408
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ-DLEIGDRVAKMVC 400
H L +AR + ++E + + A++ +H E D KM
Sbjct: 409 IHMYSKCGDLEKAREVFNSVEKRDVF-------VWSAMIGGLAMHGCGSEAVDMFYKM-- 459
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSY 454
++N +G + F N++ +C TG+V A S ++ SY
Sbjct: 460 QEANVKPNG--VTFTNVFCACSH-------------TGLVDEAESLFYKMESSY 498
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 175/463 (37%), Positives = 265/463 (57%), Gaps = 15/463 (3%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D +++ L+KA + + H K G +V AL+ Y + DA KVF
Sbjct: 204 DTFTYSFLIKALATAGVTPV-RAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVF 262
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++M +D+++WN+ + A G++D A + D MP KD S+N M+ GYA+ G+ A
Sbjct: 263 DEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFE 322
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+F ++P ++VVSW++++ AY G+ME A +F KM KN++TW MV+ + L E
Sbjct: 323 LFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEA 382
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
LF EMK ++ D + V S+L+ACA G L G RIH + L + AL+DM
Sbjct: 383 GRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDM 442
Query: 249 YAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
+ KCG + ++ +F V KD WN +I G A+HG+G AL L +M D +T
Sbjct: 443 FCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVT 502
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
I +LSAC+H GLV+EG F+ ME D+G+ ++EHYGCMVDLLGR L+ A+++I++M
Sbjct: 503 LINVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSM 562
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD------GELMMFANLYASC 421
P+EP E I G+LLSAC +H+++E + A N LS+ G + +N+YA
Sbjct: 563 PWEPNEVIWGSLLSACRLHKNVEYAELAA-------NELSNLQPSNAGNYAVLSNIYAEA 615
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+W + + R M TG KTAGSS IE++ ++H+F G H
Sbjct: 616 GKWSDMAKARVQMKGTGSQKTAGSSWIELDEAFHEFTVGDRKH 658
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 80/189 (42%), Gaps = 11/189 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E + D + +L A +G +H + V AL+ M+ C
Sbjct: 389 MKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGC 448
Query: 61 IDDAFKVFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMIS 115
++ A +F+ ++ EKD ++WN ++ FA G + A+ L M + D + ++S
Sbjct: 449 VNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLS 508
Query: 116 GYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
+G + R F + ++ + ++ G +++A +M K M + N
Sbjct: 509 ACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNE 568
Query: 170 ITWNTMVTG 178
+ W ++++
Sbjct: 569 VIWGSLLSA 577
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 176/465 (37%), Positives = 273/465 (58%), Gaps = 11/465 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D Y+FP +LKA G +GL++HG+ ++TG ++ + AL+ Y +
Sbjct: 107 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 166
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
KVF+ +D+++WNSM+ + CG++D A L D M +D S+ MI GY +
Sbjct: 167 CRSGRKVFDH-GVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEM 225
Query: 121 -GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G + AR +FD++P +D+V WNS+I Y G M++A +F++M +NVI+W+ ++ GY
Sbjct: 226 AGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGY 285
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+R E ++ F M +KPD + ++ACA LG+LE G +H Y + +
Sbjct: 286 VRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDV 345
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TALIDMY KCG ++ + +F K V WN MI+GL HGYG A+KL +M
Sbjct: 346 VVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETE 405
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
DD++ + +L++C+HAGLV EG +F RMEKD G+ K+EHYG ++DLLGRA +D+
Sbjct: 406 RAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 465
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMFA 415
A IE MP EPT + G+LL++C H+ +E+ +R+A + S G ++ +
Sbjct: 466 ARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDS-----GVYVLLS 520
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
N+YA G W++ R R +M+ G+ K G SVIEV+G H+F+ G
Sbjct: 521 NIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNG 565
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 84/208 (40%), Gaps = 22/208 (10%)
Query: 167 KNVITWNTMV-----TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
++ WNT+V RS LY F M+ V PD T +VL AC
Sbjct: 80 RHAFPWNTLVRLHAAASPRRSLLY------FSRMRRAAVAPDAYTFPAVLKACGCAPGCR 133
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G +H A GL ++ ALI Y + G +VF V+D+ WN+M+ G
Sbjct: 134 VGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVF-DHGVRDLVSWNSMVAGYV 192
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH-AGLVQEGCELFSRMEKDFGVTRK 340
G + L ++ D + D ++ ++ AG V ELF +M R
Sbjct: 193 ----GCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPD-----RD 243
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMP 368
L + M+D R +D A L E MP
Sbjct: 244 LVCWNSMIDGYARHGRMDEARVLFEEMP 271
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 175/467 (37%), Positives = 275/467 (58%), Gaps = 9/467 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E V D ++FP +LK L + G +H +K GF H +V+ L+ MY +
Sbjct: 115 MHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGE 174
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-MISGYAR 119
++ A +VF++M E+++ WNSM + G + +KL M D+ + ++S
Sbjct: 175 VEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTA 234
Query: 120 IGKIHS-------ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
G++ RY+ +K + SL+ Y G+++ A +F +M ++V+ W
Sbjct: 235 CGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAW 294
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+ M++GY ++ E +DLF EM+ N+ P+ +T+ S+LS+CA LG+LETG +H +
Sbjct: 295 SAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKK 354
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ TAL+D YAKCGS+E S+EVF K VK+V W +I GLA +G G AL+
Sbjct: 355 KRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEY 414
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M + V+ +D+TFIG+LSACSHAGLV EG +LF M +DFG+ ++EHYGCMVD+LG
Sbjct: 415 FYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILG 474
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L++ A + I+ MP +P I LL++C +H+++EIG+ K + S G+ +
Sbjct: 475 RAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHS-GDYI 533
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ +N+YAS G+WE+A + R M + GI KT G S+IE++G H+F A
Sbjct: 534 LLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFA 580
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 129/312 (41%), Gaps = 43/312 (13%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
M+ A +F+++ + +N M+ G+ Q E + LF EM +V+PD T +L
Sbjct: 74 MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
C+ L +L G +IH G S+ LI MYA CG +E + VF + ++V W
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC------------------ 315
N+M G G +KL EM + ++ D++T + +L+AC
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEE 253
Query: 316 -----------------SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ G V LF +M++ R + + M+ +A
Sbjct: 254 KGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDR-----RDVVAWSAMISGYSQASRCR 308
Query: 359 RAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
A++L M +P E + ++LS+C + LE G V + K L+
Sbjct: 309 EALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALM 368
Query: 416 NLYASCGQWEEA 427
+ YA CG E +
Sbjct: 369 DFYAKCGSVESS 380
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 104/268 (38%), Gaps = 38/268 (14%)
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC--GSIEQSLEVFYKS 265
T +L C + L IH + L P L++ A S++ ++ +F +
Sbjct: 28 TLILEQCKTIRDLN---EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQI 84
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
D +N MI G L + A+ L EM+++ V+ D+ TF +L CS + EG
Sbjct: 85 DEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGE 144
Query: 326 ELFSRMEK------------------------------DFGVTRKLEHYGCMVDLLGRAR 355
++ + + K D R + + M ++
Sbjct: 145 QIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSG 204
Query: 356 LLDRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
+ ++L M E L ++L+AC DLE+G+ + + V K + +
Sbjct: 205 NWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLIT 264
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIV 440
++YA CGQ + A R + M+ +V
Sbjct: 265 SLVDMYAKCGQVDTARRLFDQMDRRDVV 292
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/501 (36%), Positives = 285/501 (56%), Gaps = 45/501 (8%)
Query: 10 NYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFE 69
N++FP +LKA L S G +H ++ GF ++V +L+ MY +D A ++
Sbjct: 93 NFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWD 152
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYAR--------- 119
M +D ++WNS++ + GQ++ A L + MP++ +V + MI+GY +
Sbjct: 153 DMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLS 212
Query: 120 ---------------------------------IGKIHSARYIFDKVPAKDVVSWNSLIL 146
+G+ S +K+P ++ +LI
Sbjct: 213 LFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILV-TALID 271
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y+ G++EKA +F + KN+ +WN ++TG ++ L E +DL+ MKA +VKP+ +T
Sbjct: 272 MYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEIT 331
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ +VLSACA LG+LE G +H+Y NGL N TAL+DMYAKCG I+ + +F K+
Sbjct: 332 LVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTS 391
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
KDV WNAMILGLA HG G +L + +M + V+ +D+TFIG+LSAC+H+GLV+EG
Sbjct: 392 EKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRV 451
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
FS M G++ KLEHY CMVDLLGRA L A EL++ M P I GALLSAC IH
Sbjct: 452 QFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIH 511
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
++LE+ D++++ + A + + G ++ +N+YAS G+W++ R R + + I K +G S
Sbjct: 512 RNLELADKISETIMASQDP-NIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCS 570
Query: 447 VIEVNGSYHKFLAGGIGHLSN 467
+EV+G H+F+ HL +
Sbjct: 571 WVEVDGVVHRFVVEDTTHLKS 591
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 165/338 (48%), Gaps = 46/338 (13%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H QT+ G + +QT L+ L ID A V ++ P +WNS++ A+ G
Sbjct: 18 IHAQTLIHG----LPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGS 73
Query: 92 MDHAMKLIDLM------------PL---------------------------KDVTSFNI 112
+++ L M P D+ N
Sbjct: 74 PQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNS 133
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVIT 171
+I Y + ++ SAR +D + +D VSWNS+I Y G++EKA ++F++M + +NV+
Sbjct: 134 LIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVC 193
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
W M+ GY + ++E++ LF +M A V+P+ T+ +LSAC+ L + E G + V+
Sbjct: 194 WTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVF 253
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
N + N TALIDMY+KCG +E++ +F K++ WNA+I G G A
Sbjct: 254 IDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEA 313
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+ L M VK ++IT + +LSAC+ G ++ G E+
Sbjct: 314 IDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREV 351
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 163/404 (40%), Gaps = 109/404 (26%)
Query: 94 HAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE 153
HA LI +PL+ +I + I AR++ D+ P+ SWNSLI AYT G
Sbjct: 19 HAQTLIHGLPLQ-----THLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGS 73
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+ + ++ KML RS + KP T VL A
Sbjct: 74 PQNSLFLYLKML---------------RS----------------STKPSNFTFPFVLKA 102
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC--------------------- 252
C+ LGS+ G +IH + G S+ +LIDMY KC
Sbjct: 103 CSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSW 162
Query: 253 ----------GSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
G +E++ ++F + + ++V CW AMI G G L L +M V
Sbjct: 163 NSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQM---LV 219
Query: 302 KADDI-----TFIGLLSACS----------------------HAGLVQEGCELFSR---M 331
AD++ T + LLSACS + LV +++S+ +
Sbjct: 220 SADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDV 279
Query: 332 EKDF----GVT-RKLEHYGCMVDLLGRARLLDRAIEL---IEAMPFEPTESILGALLSAC 383
EK + GV+ + L + ++ + LL+ AI+L ++A +P E L +LSAC
Sbjct: 280 EKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSAC 339
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
LE+G V + L+ ++YA CG+ ++A
Sbjct: 340 AGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDA 383
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 5/161 (3%)
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+LS SL +IH +GL H LID++ SI+ + V ++
Sbjct: 2 LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLH----SIDYARFVLDQTPSPT 57
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
F WN++I +HG +L L +M S K + TF +L ACS G V EG ++ +
Sbjct: 58 DFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHT 117
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
+ + G L ++D+ + LD A + M F
Sbjct: 118 HVLR-LGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFR 157
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V + + +L A L + +G +H + G +V + TAL+ MY
Sbjct: 320 MKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGK 379
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
IDDA +F K EKD+ WN+M+ A G ++ + M DVT ++ S
Sbjct: 380 IDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVL-S 438
Query: 116 GYARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLV-KNV 169
G + R F + K +S + ++ AG +++A E+ + ML+ +
Sbjct: 439 ACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDS 498
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
I W +++ R +E+ D E + P+
Sbjct: 499 IIWGALLSA-CRIHRNLELADKISETIMASQDPN 531
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/509 (37%), Positives = 288/509 (56%), Gaps = 44/509 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP LLK+ + G +HG +K G+ ++V T+L+ +Y
Sbjct: 125 MISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGR 184
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF++ P +D++++ +++ +AS G ++ A KL D +P+KDV S+N MISGYA
Sbjct: 185 LEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAET 244
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F ++ P + V SW
Sbjct: 245 GNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIV 304
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSL+ Y+ GE+E A +F+ +L K+VI+WNT++ GY LY E + LF EM +
Sbjct: 305 NSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGER 364
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT---TALIDMYAKCGSIEQS 258
P+ +T+ S+L ACA+LG+++ G IHVY D L S +A+ T+LIDMYAKCG IE +
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVY-IDKRLKSATNASSLRTSLIDMYAKCGDIEAA 423
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+VF K + WNAMI G A+HG AA + M ++ DDITF+GLLSACS +
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRS 483
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
G++ G +F M +D+ +T KLEHYGCM+DLLG + L A E+I M EP I +
Sbjct: 484 GMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCS 543
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
LL AC I ++E+G+ A+ + K + G ++ +N+YA+ G+W E + R ++ND G
Sbjct: 544 LLKACKIRGNVELGESFAQNLI-KIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKG 602
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
+ K G S IE++ H+F+ G H N
Sbjct: 603 MKKVPGCSSIEIDSVVHEFIIGDKFHPRN 631
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 136/297 (45%), Gaps = 41/297 (13%)
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K + S ++ + + G +H+ Y K+ V+S + L Y A +F+ +
Sbjct: 44 KTLQSLRLIHAQMIKTG-LHNTNYALSKLLELCVISPHFDGLPY--------AISVFETI 94
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
N++ WNTM G+ S + + L+ M + + P+ T +L +CA + + G
Sbjct: 95 QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQ 154
Query: 225 RIH--------------------VYATDNGLAS-------NPH----ATTALIDMYAKCG 253
+IH VY + L +PH + TALI YA G
Sbjct: 155 QIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRG 214
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
IE + ++F + VKDV WNAMI G A G AL+L EM + ++ D+ T + ++S
Sbjct: 215 YIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVS 274
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
AC+ +G ++ G ++ S ++ D G L+ ++DL + L+ A L E + ++
Sbjct: 275 ACAQSGSIELGRQVHSWID-DHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYK 330
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 178/493 (36%), Positives = 285/493 (57%), Gaps = 36/493 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L + G+ +HG IK+ +++Q L+ +Y C
Sbjct: 84 MLENGVLVDKFSMSLVLKACSRLGFAKEGMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGC 143
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL---------------- 104
+ A +VF++MP++D +++NSM+D + CG ++ A +L DLMP
Sbjct: 144 LGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYA 203
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KD+ S+N MI GY + G+I A+ +FD +P +DVV+W +I
Sbjct: 204 QRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMID 263
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y G + +A +F +M ++V+ +N+M++G+++++ +IE +++F+ M K ++ PD
Sbjct: 264 GYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDET 323
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L +H+Y + + ALIDMY+KCGSI+ ++ VF
Sbjct: 324 TLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGI 383
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L ++ +K D ITF+G+L+ACSH+GLV+EG
Sbjct: 384 ESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGL 443
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 444 LCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSH 503
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + ++ Y + ++ +N+YAS G W++ R R MM + I K G
Sbjct: 504 HKEFETGELVAKHLILQAGY-NPSSYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGC 562
Query: 446 SVIEVNGSYHKFL 458
S IE++G H+FL
Sbjct: 563 SWIELDGRVHEFL 575
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 43/237 (18%)
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+K+ WN ++ + + + LF M V D +++ VL AC+ LG + G +
Sbjct: 55 IKDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQ 114
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF----------YKSQV-------- 267
+H + + S+ LI +Y KCG + + +VF Y S +
Sbjct: 115 VHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGL 174
Query: 268 ---------------KDVFCWNAMILGLALHGYGY-AALKLLGEMNDSCVKADDITFIGL 311
+++ WN+MI G A G A KL EM + D I++ +
Sbjct: 175 VESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEK----DLISWNSM 230
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ G +++ LF M + VT + M+D G+ L+ +A L + MP
Sbjct: 231 IGGYVKHGRIEDAKGLFDVMPRRDVVT-----WAIMIDGYGKLGLVHQAKTLFDQMP 282
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 63/182 (34%), Gaps = 44/182 (24%)
Query: 233 NGLASNPHATTALI--------------DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
G NP+ TT ++ +A+C E ++KD F WNA+I
Sbjct: 7 TGFIKNPNLTTRIVLAFASSSSSRRPFLAEFARCVFHEYHSRSVSPGEIKDPFLWNAVIK 66
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE--------------- 323
+ AL L M ++ V D + +L ACS G +E
Sbjct: 67 SHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQVHGFLIKSRTWS 126
Query: 324 ---------------GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
GC F+R D R Y M+D + L++ A EL + MP
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMP 186
Query: 369 FE 370
E
Sbjct: 187 RE 188
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 187/508 (36%), Positives = 284/508 (55%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ + Y+FP LLK+ + G +HG +K G+ +YV T+L+ MY
Sbjct: 79 MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGR 138
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF++ +D++++ +++ +AS G + A K+ D +P+KDV S+N MISGYA
Sbjct: 139 LEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 198
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F ++ P + V SW
Sbjct: 199 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIV 258
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y GE+E A +F+ + K+VI+WNT++ GY LY E + LF EM
Sbjct: 259 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 318
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA+LG++E G IHVY G+A+ T+LIDMYAKCG IE +
Sbjct: 319 PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQ 378
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF + + WNAMI G A+HG AA + M + ++ DDITF+GLLSACSH+G
Sbjct: 379 QVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSG 438
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M++D+ +T KLEHYGCM+DLLG + L A E+I M EP I +L
Sbjct: 439 MLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 498
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC +H ++E+G+ A+ + K + G ++ +N+YA+ G+W E + R ++ND G+
Sbjct: 499 LKACKMHGNVELGESYAQNLI-KIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM 557
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 558 KKVPGCSSIEIDSVVHEFIIGDKFHPRN 585
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 135/488 (27%), Positives = 214/488 (43%), Gaps = 90/488 (18%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLK---MYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
M+H Q IKTG Y + L++ + + A VFE + E +++ WN+M A
Sbjct: 5 MIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHA 64
Query: 88 --------------------------------SCGQMD----------HAMKL-IDLMPL 104
SC + H +KL DL
Sbjct: 65 LSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL--- 121
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
D+ +IS Y + G++ AR +FD+ +DVVS+ +LI Y + G + A +MF ++
Sbjct: 122 -DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+K+V++WN M++GY + E ++LF EM NV+PD T+ SV+SACA S+E G
Sbjct: 181 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 240
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
++H + D+G SN ALID+Y KCG +E + +F KDV WN +I G
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF-GVTRKLEH 343
AL L EM S +D+T + +L AC+H G ++ G + + K GV H
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360
Query: 344 YGCMVDLLGRA-----------RLLDRAIELIEAMPF----------------------- 369
++D+ + +L+R++ AM F
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 420
Query: 370 EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA---NLYASCGQWEE 426
EP + LLSAC L++G + + + K +Y +L + +L G ++E
Sbjct: 421 EPDDITFVGLLSACSHSGMLDLGRHIFRSM--KEDYKITPKLEHYGCMIDLLGHSGLFKE 478
Query: 427 ANRWRNMM 434
A N M
Sbjct: 479 AEEMINTM 486
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 182/504 (36%), Positives = 276/504 (54%), Gaps = 42/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D Y+FP L K + G LHG +K G +V+V TAL++MY
Sbjct: 130 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQ 189
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI--------------------- 99
+D A VF+ P+ D+I WN ++ A+ G+ + + +L
Sbjct: 190 LDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 249
Query: 100 -----DLMPLKDVTSF-------------NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
DL K V S+ N MI YA G++ SA IF + +D++SW
Sbjct: 250 CSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISW 309
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+++ +TN GE++ A F KM K+ ++W M+ GY+RS + E ++LF M+A NVK
Sbjct: 310 TTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 369
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ SVL+ACA+LG+LE G I Y N + ++ ALIDMY KCG ++++ +
Sbjct: 370 PDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESI 429
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + +D F W AMI+GLA++G+G AL + M + + D+IT+IG+LSAC+H GLV
Sbjct: 430 FREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 489
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+G + F RM G+ + HYGC+VDLL RA L A E+IE MP + + GALL+
Sbjct: 490 DKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 549
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDTGIV 440
C ++++ ++ + V K + +G + ++ N+YA+C +W + R MM D GI
Sbjct: 550 GCRVYRESDMAEMVVKQILELEP--DNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIK 607
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S+IE+NG H+F+AG H
Sbjct: 608 KXPGCSLIEMNGRVHEFVAGDRSH 631
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 165/380 (43%), Gaps = 48/380 (12%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM-----YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF 86
+H Q IK G + +Q ++ YG + A ++F+++PE ++ WN+M+ +
Sbjct: 58 VHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQY---ARRLFDEIPEPNLFIWNTMIRGY 114
Query: 87 ASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSARYIFDKVPAK----DV 138
+ + L M + D +F + G+ R + R + V +V
Sbjct: 115 SRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNV 174
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+L+ Y G+++ A +F +VITWN +++ Y + + E LF M+
Sbjct: 175 FVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDK 234
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
V P +T+ VLSAC+ L L TG ++H Y + + SN A+IDMYA CG ++ +
Sbjct: 235 QVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSA 294
Query: 259 LEVFY-------------------------------KSQVKDVFCWNAMILGLALHGYGY 287
L +F K KD W AMI G
Sbjct: 295 LGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK 354
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL+L M + VK D+ T + +L+AC+H G ++ G + + ++++ + L +
Sbjct: 355 EALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRN-KIKNDLFVRNAL 413
Query: 348 VDLLGRARLLDRAIELIEAM 367
+D+ + +D+A + M
Sbjct: 414 IDMYFKCGDVDKAESIFREM 433
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 183/500 (36%), Positives = 285/500 (57%), Gaps = 41/500 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV ++Y+FP LLK+ + ++ G +HG +K G +V T+L+ MY + A
Sbjct: 127 GVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYA 186
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF K +D +++ +++ + G +D A +L + +P++D S+N MI+GYA+ G+
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246
Query: 125 SARYIFDKVPAKDVV--------------------------SW-------------NSLI 145
A F ++ +V SW N+LI
Sbjct: 247 EALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALI 306
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y+ G+++KA ++F+ + K++I+WN M+ GY Y E + LF +M+ NV+P+ +
Sbjct: 307 DMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLA-SNPHATTALIDMYAKCGSIEQSLEVFYK 264
T S+L ACA LG+L+ G IH Y L +N T+LIDMYAKCG+IE + +VF
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG 426
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ K + WNAMI GLA+HG+ AL+L +M D + DDITF+G+LSACSHAGLV+ G
Sbjct: 427 MKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
+ FS M +D+ ++ KL+HYGCM+DLLGRA L D A L++ M +P +I G+LL AC
Sbjct: 487 RQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACR 546
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
+H ++E+G+ AK + + G ++ +N+YA+ G+W++ R R +ND G+ K G
Sbjct: 547 VHGNVELGEFAAKHLFELEPE-NPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPG 605
Query: 445 SSVIEVNGSYHKFLAGGIGH 464
S IEV+ H+FL G H
Sbjct: 606 CSSIEVDSVVHEFLVGDKVH 625
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 143/349 (40%), Gaps = 67/349 (19%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A + G + A +F+ + N WNTM+ G S + +D + M V+P+ T
Sbjct: 75 AISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYT 134
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+L +CA +G+ + G +IH + GL S+P T+LI+MYA+ G + + VF KS
Sbjct: 135 FPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194
Query: 267 -------------------------------VKDVFCWNAMILGLALHGYGYAALKLLGE 295
V+D WNAMI G A G AL E
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + V ++ T + +LSAC+ +G ++ G + S +E D G+ L ++D+ +
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIE-DHGLGSNLRLVNALIDMYSKCG 313
Query: 356 LLDRAIELIEAM----------------------------------PFEPTESILGALLS 381
LD+A +L E + EP + ++L
Sbjct: 314 DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILP 373
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM-FANLYASCGQWEEANR 429
AC L++G + + K L++ L ++YA CG E A +
Sbjct: 374 ACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/479 (35%), Positives = 275/479 (57%), Gaps = 37/479 (7%)
Query: 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE 73
PL+LKA LS G LH ++IK G V + T+L+ MY + D+ KVF+ MPE
Sbjct: 98 PLVLKACASLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPE 157
Query: 74 KDIIAWNSML-------------------------------DAFASCGQMDHAMKLIDLM 102
++ + WN+M+ D FA G + A + D +
Sbjct: 158 RNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDV 217
Query: 103 P--LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEM 160
P L++V ++ +M+ GYAR ++ +AR +F+ +P ++ +W+S+I Y G +++A +
Sbjct: 218 PSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSI 277
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
F ++ V+N++ WN++++GY ++ E ++ F +M+A +PD +T+ SVLSAC+ LG L
Sbjct: 278 FDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLL 337
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
+ G +IH G+ N L+DMYAKCG + + +F ++ CWN+MI G
Sbjct: 338 DAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGF 397
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
A+HG AL+ G M DS D+ITF+ +LSAC+H G V G E+FSRMEK +G+T
Sbjct: 398 AIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTG 456
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC 400
++HYGC++DLLGRA + A +LI+ MP +P + + GALL AC +H D+E+ DRV + +
Sbjct: 457 IKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIV 516
Query: 401 AKSNYLS---DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHK 456
+ +S D ++ +N+YA+ +WE+A + R M + G KT+G S I + H+
Sbjct: 517 KVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGNNTHE 575
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 10/199 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D + +L A L G +H G + +V L+ MY
Sbjct: 312 MQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGD 371
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
+ +A +FE M ++ WNSM+ FA GQ A++ M D +F ++S
Sbjct: 372 LANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSA 431
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVIT 171
A G +++ IF ++ + + + LI AG +++A ++ K+M VK N +
Sbjct: 432 CAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVV 491
Query: 172 WNTMVTGYLRSQLYIEVVD 190
W ++ G R L +E+ D
Sbjct: 492 WGALL-GACRVHLDMEMAD 509
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 178/456 (39%), Positives = 266/456 (58%), Gaps = 2/456 (0%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D Y+F L+K ++ G +LHG +K G C +YV TAL+ MY + A KVF
Sbjct: 124 DGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVF 183
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++M + ++W +++ +A CG M A +L D M +D+ +FN MI GY ++G + AR
Sbjct: 184 DEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARE 243
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+F+++ ++VVSW S++ Y G++E A MF M KNV TWN M+ GY +++ +
Sbjct: 244 LFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDA 303
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
++LF EM+ +V+P+ +TV VL A A+LG+L+ G IH +A L + TALIDM
Sbjct: 304 LELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDM 363
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YAKCG I ++ F ++ WNA+I G A++G AL++ M + +++T
Sbjct: 364 YAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTM 423
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
IG+LSAC+H GLV+EG F+ ME+ FG+ ++EHYGCMVDLLGRA LD A LI+ MP
Sbjct: 424 IGVLSACNHCGLVEEGRRWFNAMER-FGIAPQVEHYGCMVDLLGRAGCLDEAENLIQTMP 482
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
++ IL + L AC D+ +RV K V K + G +M NLYA+ +W +
Sbjct: 483 YDANGIILSSFLFACGYFNDVLRAERVLKEV-VKMDEDVAGNYVMLRNLYATRQRWTDVE 541
Query: 429 RWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ MM G K SVIE+ GS+ +F AG H
Sbjct: 542 DVKQMMKKRGTSKEVACSVIEIGGSFIEFAAGDYLH 577
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 35/302 (11%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK--AGNVKPDYLTVTSVLSAC 214
A F ++ N+M+ + ++ + + LF +++ A PD T T+++ C
Sbjct: 76 ARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALVKGC 135
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
A + G +H NG+ + + TAL+DMY K G + + +VF + V+ W
Sbjct: 136 ATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWT 195
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
A+I+G A G A +L EM D D + F ++ G V ELF+ M +
Sbjct: 196 AVIVGYARCGDMSEARRLFDEMEDR----DIVAFNAMIDGYVKMGCVGLARELFNEMRER 251
Query: 335 FGVT-----------RKLEHYGCMVDLLG---------------RARLLDRAIELIEAM- 367
V+ +E+ M DL+ + R A+EL M
Sbjct: 252 NVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQ 311
Query: 368 --PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
EP E + +L A L++G + + K S ++YA CG+
Sbjct: 312 TASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEIT 371
Query: 426 EA 427
+A
Sbjct: 372 KA 373
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 19/216 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V + + +L A L + +G +H ++ + TAL+ MY
Sbjct: 310 MQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGE 369
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PLKDVTSFNIMI 114
I A FE M E++ +WN++++ FA G A+++ M P +VT ++
Sbjct: 370 ITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGP-NEVTMIGVL- 427
Query: 115 SGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN-- 168
S G + R F+ + A V + ++ AG +++A + + M
Sbjct: 428 SACNHCGLVEEGRRWFNAMERFGIAPQVEHYGCMVDLLGRAGCLDEAENLIQTMPYDANG 487
Query: 169 -VITWNTMVTGY----LRSQLYIEVVDLFDEMKAGN 199
+++ GY LR++ ++ V DE AGN
Sbjct: 488 IILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGN 523
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 173/459 (37%), Positives = 272/459 (59%), Gaps = 13/459 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ N+++P ++ + L G +H + +K+GF V +L MY +
Sbjct: 45 MPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPA 104
Query: 61 -----------IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS 109
+D A K+F+ M + + WN M+ + + G + A +L D+MP +D+ S
Sbjct: 105 SFDVGLASNCKLDYARKIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVS 164
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+N MI GYA+ GK+ +AR +F+K+P K+V+SW S+I AY + ++E A F+ M +NV
Sbjct: 165 WNSMILGYAKGGKVANARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNV 224
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++WN+M++ Y + ++E ++LF +M++ V PD T SVLSAC+NLG LE G IH Y
Sbjct: 225 VSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIH-Y 283
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ + S TAL +MYA+CG ++++ VF K +DVFCWN +I LALHG A
Sbjct: 284 LSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEA 343
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+K+ M + +K +D TF L ACSH GLV+EG +F+ MEKD+ + K+ HYGC++D
Sbjct: 344 IKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLID 403
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
+L R L+ A+ L+E MPF+P +I GALL C + DL++ ++V + S G
Sbjct: 404 MLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNES-G 462
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
++ +N++AS GQW EA R M++ I K GSSV+
Sbjct: 463 VYVLLSNIHASAGQWIEAADARKKMDEKKISKKTGSSVV 501
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 113/300 (37%), Gaps = 89/300 (29%)
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM----------ISGYARIGKIH 124
+I+ WN+M+ +A G +++ D MP + + N + Y R ++H
Sbjct: 18 EIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVH 77
Query: 125 S----------------------------------------ARYIFDKVPAKDVVSWNSL 144
AR IFD + + V WN +
Sbjct: 78 CEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQM 137
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I Y N G+++ A E+F M +++++WN+M+ GY + LF++M NV
Sbjct: 138 IGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNV---- 193
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
++ TS++ A A+ LET + S ++I YAK G +SL +F
Sbjct: 194 ISWTSMIGAYADTDDLETARSFFETMPQRNVVS----WNSMISSYAKHGKFVESLNLFV- 248
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+M V D TF+ +LSACS+ G ++ G
Sbjct: 249 ------------------------------QMQSEGVTPDGYTFVSVLSACSNLGDLEFG 278
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 117/307 (38%), Gaps = 61/307 (19%)
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++ WN M+ GY + + E + +FDEM +KP T V+++C L G R+H
Sbjct: 19 IVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHC 78
Query: 229 YATDNGLASNPHATTALIDMYAK------------------------------------- 251
+G S+ +L +MY K
Sbjct: 79 EIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQMI 138
Query: 252 -----CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
G ++ + E+F +D+ WN+MILG A G A L +M + V I
Sbjct: 139 GKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNV----I 194
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
++ ++ A + ++ F M + R + + M+ + ++ L
Sbjct: 195 SWTSMIGAYADTDDLETARSFFETMPQ-----RNVVSWNSMISSYAKHGKFVESLNLFVQ 249
Query: 367 MPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM---FANLYAS 420
M E P ++LSAC DLE G K + S LS E+M+ +YA
Sbjct: 250 MQSEGVTPDGYTFVSVLSACSNLGDLEFG----KYIHYLSGDLSQSEVMVGTALTEMYAQ 305
Query: 421 CGQWEEA 427
CG ++A
Sbjct: 306 CGDVDKA 312
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 182/498 (36%), Positives = 280/498 (56%), Gaps = 34/498 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSL-R 59
M+ L V A++++F LLK + G ++HG+ +K GF V+VQ +LL Y +
Sbjct: 65 MKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSE 124
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID------------------- 100
+ A++VFE+MPE+D+I+WNSM+ A+ + G++ A+ L+D
Sbjct: 125 NLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSK 184
Query: 101 ------------LMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
MPL++ S+N MISGY RIG + +A+ IF ++P K VVSW ++I Y
Sbjct: 185 AGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGY 244
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTV 207
G+++ A +F M VKNV++WN M++GY+ + + + + +F M G +PD T+
Sbjct: 245 ATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTL 304
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
S+LSACA+LGSLE G I+ Y N L + ALIDM+AKCG +E + EVF+
Sbjct: 305 ISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSK 364
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+ + W M+ GLA++G A+ L +M K DD+ FI +LSAC+H GLV+EG +
Sbjct: 365 RCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRV 424
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F +M ++FG+ ++EHYGCMVDLLGRA L+ A+ M +P I LL C IH
Sbjct: 425 FDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHG 484
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
+ ++ V + + + + L + +NL AS G+WE+ +R M + K G S
Sbjct: 485 NGDLLKSVTEKIMDQEPS-NPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSS 543
Query: 448 IEVNGSYHKFLAGGIGHL 465
I+V H+FLA H+
Sbjct: 544 IQVGNRVHEFLAKDTRHV 561
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 171/467 (36%), Positives = 272/467 (58%), Gaps = 37/467 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M V +Y+FP L+KA G++S +HG + GF HV+VQT
Sbjct: 71 MLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQT----------- 119
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
S++D ++S G+++ ++++ D MP +DV ++ M+SG R+
Sbjct: 120 --------------------SLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRV 159
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + SA +FD +P +++ +WN+LI Y E++ A +F +M +++I+W TM+ Y
Sbjct: 160 GDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYS 219
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+++ + E + +F+EM + PD +T+ +V+SACA+LG+L+ G IH Y +G + +
Sbjct: 220 QNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVY 279
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ALIDMYAKCGS+++SL +F+K + K++FCWN++I GLA+HGY AL + +M
Sbjct: 280 IGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREK 339
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+K + +TF+ +LSAC+HAGL++EG + F+ M +D + +EHYGCMVDLL +A LL+ A
Sbjct: 340 IKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEA 399
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLY 418
++LI M EP I GALLS C +H++LEI A MV N G + N+
Sbjct: 400 LQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGN---SGYYTLLVNMN 456
Query: 419 ASCGQWEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLAGGIGH 464
A +W EA + R M + G+ K GSS IE+ H+F A H
Sbjct: 457 AEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKSH 503
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 129/295 (43%), Gaps = 12/295 (4%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+D N I A + M+ A + +M + NV +N M+ G+++S ++ ++L+ +M
Sbjct: 12 QDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQM 71
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
NV P T S++ AC + L +H + NG S+ T+L+D Y+ G I
Sbjct: 72 LRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRI 131
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
E+S+ VF + +DVF W M+ GL G +A +L M D + T+ L+
Sbjct: 132 EESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLA----TWNTLIDGY 187
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPT 372
+ V LF++M R + + M++ + + A+ + M P
Sbjct: 188 ARLREVDVAELLFNQMP-----ARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPD 242
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
E + ++SAC L++G + + L ++YA CG + +
Sbjct: 243 EVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRS 297
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 180/493 (36%), Positives = 283/493 (57%), Gaps = 36/493 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y C
Sbjct: 92 MIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGC 151
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYA 118
+ A +VF++MP++D +++NSM+D + CG M A KL DLMP +K++ S+N MISGYA
Sbjct: 152 LGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMPREIKNLISWNSMISGYA 211
Query: 119 RI--------------------------------GKIHSARYIFDKVPAKDVVSWNSLIL 146
+ G+I A+ +FD +P +DVV+W ++I
Sbjct: 212 QTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMID 271
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y G + A +F +M ++V+ N+M+ GY++++ ++E +++F++M K ++ PD
Sbjct: 272 GYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDET 331
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L +HVY + ALIDM++KCGSI+ ++ VF
Sbjct: 332 TLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALIDMHSKCGSIQHAISVFEGI 391
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G A +L ++ ++ D ITFIG+L+ACSH+GLV+EG
Sbjct: 392 ENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGL 451
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGC+VD+L R+ ++ A LIE MP EP + I + LSAC
Sbjct: 452 LCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIEDMPMEPNDVIWRSFLSACST 511
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + ++ Y + ++ +N+YAS G W++ R R MM + K G
Sbjct: 512 HEEFETGELVAKHLILQAGY-NPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGC 570
Query: 446 SVIEVNGSYHKFL 458
S IE++G+ H+F
Sbjct: 571 SWIELDGNVHEFF 583
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 43/230 (18%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ Y + LF M V D +++ VL AC+ L L+ G +IH +
Sbjct: 69 WNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHGFLR 128
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVF----------YKS---------------- 265
G+ S+ LI +Y KCG + + +VF Y S
Sbjct: 129 KTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHK 188
Query: 266 -------QVKDVFCWNAMILGLALHGYGY-AALKLLGEMNDSCVKADDITFIGLLSACSH 317
++K++ WN+MI G A G A KL EM + D I++ +++ C
Sbjct: 189 LFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEK----DLISWNSMINGCVK 244
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
G +++ LF M + R + + M+D + + A L + M
Sbjct: 245 HGRIEDAKGLFDVMPR-----RDVVTWATMIDGYAKLGFVHHAKSLFDQM 289
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 225 RIHVYATDNGLASNPHATTALI-----------DMYAKCGSIEQSLEVFYKSQVKDVFCW 273
++H GL NP+ TT ++ +A+C E L F + +D + W
Sbjct: 10 KMHARLITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGEDPYLW 69
Query: 274 NAMILGLALHGYG-YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
NA+I + HG AL L M ++ V D + +L ACS ++EG ++ +
Sbjct: 70 NAVIKSYS-HGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHGFLR 128
Query: 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
K G+ L C++ L + L A ++ + MP
Sbjct: 129 KT-GIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMP 163
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 186/508 (36%), Positives = 284/508 (55%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ + Y+FP LLK+ + G +HG +K G+ +YV T+L+ MY
Sbjct: 94 MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGR 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF++ +D++++ +++ +AS G + A K+ D +P+KDV S+N MISGYA
Sbjct: 154 LEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 213
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F ++ P + V SW
Sbjct: 214 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y GE+E A +F+ + K+VI+WNT++ GY LY E + LF EM
Sbjct: 274 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA+LG++E G IHVY G+A+ T+LIDMYAKCG IE +
Sbjct: 334 PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQ 393
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF + + WNAMI G A+HG AA + M + ++ DDITF+GLLSACSH+G
Sbjct: 394 QVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSG 453
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M++D+ +T KLEHYGCM+DLLG + L A E+I M EP I +L
Sbjct: 454 MLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 513
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC ++ ++E+G+ A+ + K + G ++ +N+YA+ G+W E + R ++ND G+
Sbjct: 514 LKACKMYANVELGESYAQNLI-KIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM 572
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRN 600
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 135/488 (27%), Positives = 214/488 (43%), Gaps = 90/488 (18%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLK---MYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
M+H Q IKTG Y + L++ + + A VFE + E +++ WN+M A
Sbjct: 20 MIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHA 79
Query: 88 --------------------------------SCGQMD----------HAMKL-IDLMPL 104
SC + H +KL DL
Sbjct: 80 LSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL--- 136
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
D+ +IS Y + G++ AR +FD+ +DVVS+ +LI Y + G + A +MF ++
Sbjct: 137 -DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 195
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+K+V++WN M++GY + E ++LF EM NV+PD T+ SV+SACA S+E G
Sbjct: 196 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 255
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
++H + D+G SN ALID+Y KCG +E + +F KDV WN +I G
Sbjct: 256 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 315
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF-GVTRKLEH 343
AL L EM S +D+T + +L AC+H G ++ G + + K GV H
Sbjct: 316 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 375
Query: 344 YGCMVDLLGRA-----------RLLDRAIELIEAMPF----------------------- 369
++D+ + +L+R++ AM F
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 435
Query: 370 EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA---NLYASCGQWEE 426
EP + LLSAC L++G + + + K +Y +L + +L G ++E
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRHIFRSM--KEDYKITPKLEHYGCMIDLLGHSGLFKE 493
Query: 427 ANRWRNMM 434
A N M
Sbjct: 494 AEEMINTM 501
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 180/504 (35%), Positives = 293/504 (58%), Gaps = 37/504 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y C
Sbjct: 105 MLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGC 164
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYA 118
+ A ++F++MP++D +++NSM++ + CG ++ A +L DLMP +K++ S+N MISGYA
Sbjct: 165 LGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYA 224
Query: 119 RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEME---------------------- 155
+ + ++ A +F ++P KD++SWNS+I Y G +E
Sbjct: 225 QTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMID 284
Query: 156 ---------KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
+A +F +M +++V+ +N+M+ GY++++ ++E +++F++M K ++ PD
Sbjct: 285 GYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDET 344
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ +LSA A LG L +H+Y + ALIDMY+KCGSI+ ++ VF
Sbjct: 345 TLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGI 404
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L ++ + DDITF+G+L+ACSH+GLV+EG
Sbjct: 405 ENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGL 464
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 465 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSH 524
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + ++ Y + ++ +N+YAS G W++ R R MM + I K G
Sbjct: 525 HKEFETGELVAKHLILQAGY-NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGC 583
Query: 446 SVIEVNGSYHKFLAGGIGHLSNLL 469
S IE++G H+F I +SN L
Sbjct: 584 SWIELDGRVHEFFVDSI-EVSNTL 606
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 43/233 (18%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ + + + + LF M V D +++ VL AC+ LG ++ G +IH +
Sbjct: 82 WNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLR 141
Query: 232 DNGLASNPHATTALIDMYAKCGS-------------------------------IEQSLE 260
GL S+ LI +Y KCG IE + E
Sbjct: 142 KTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARE 201
Query: 261 VF--YKSQVKDVFCWNAMILGLALHGYGY-AALKLLGEMNDSCVKADDITFIGLLSACSH 317
+F ++K++ WN+MI G A G A KL EM + D I++ ++
Sbjct: 202 LFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEK----DLISWNSMIDGYVK 257
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
G +++ LF M + R + M+D + + +A L + MP
Sbjct: 258 HGRIEDAKGLFDVMPR-----RDVVTCATMIDGYAKLGFVHQAKTLFDQMPLR 305
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 209 SVLSACANLGSLETG---ARIHVYATDNGLASNPHATTALI-----------DMYAKCGS 254
S+ S LGS +T +IH G+ N + TT ++ +A+C
Sbjct: 4 SISSTIQVLGSCKTSYDVNKIHGGLIKTGIIKNSNLTTRIVLAFAASRRPYLAEFARCVF 63
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGL 311
E + F +++D F WNA+I H +G AL L M ++ V D + +
Sbjct: 64 HEYHVCSFSPGEMEDPFLWNAVIKS---HSHGKDPRQALLLFCLMLENGVSVDKFSLSLV 120
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
L ACS G V+ G ++ + K G+ L C++ L + L A ++ + MP
Sbjct: 121 LKACSRLGFVKGGMQIHGFLRKT-GLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMP 176
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/461 (39%), Positives = 268/461 (58%), Gaps = 21/461 (4%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY------- 55
+ G+ ++++P +LK+ L G +H + +KTGF + V AL +Y
Sbjct: 23 QRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTGFSLNSSVSDALFHLYVNFSKFT 82
Query: 56 GSLRCID----DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN 111
G D DA KVF++M + + WN M+ + S G + A KL + M +D S+N
Sbjct: 83 GPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWN 142
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
MISGY ++G++ AR +F+K+P K+VVSW S+I AY AG++ A F KM +NV++
Sbjct: 143 TMISGYIKVGEVMKARELFEKMPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVS 202
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN+M++ Y++ + E +DLF++M + + PD T SV SAC++LG+L G +IH YA
Sbjct: 203 WNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIH-YAI 261
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
D+ A TALI+MYAKCG I ++ +F K KDVF WN M+ LALHG ALK
Sbjct: 262 DDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALK 321
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L M +K +D TF+G L ACSH G+V+EG +F MEK++ + ++EH+GC+VDLL
Sbjct: 322 LFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFGCIVDLL 381
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL----EIGDRVAKMVCAKSNYLS 407
R L+ A+++++ MPFE +I GALL C + D EI +R K+ +
Sbjct: 382 SRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGDFKRAGEIVERARKLRSKEG---- 437
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
G + F+N+YAS QW EA R M + I+K G S +
Sbjct: 438 -GIHVSFSNMYASVEQWAEAVNAREKMENENILKKTGQSSV 477
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 21/227 (9%)
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ GY + + V L+ ++ +KP T VL +CA+LG G ++H G
Sbjct: 1 MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTG 60
Query: 235 LASNPHATTALIDMY-----------AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+ N + AL +Y A G + +VF + V+ V WN MIL
Sbjct: 61 FSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTST 120
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G A KL M D D +++ ++S G V + ELF +M + + +
Sbjct: 121 GDVSGAQKLFNTMEDR----DTVSWNTMISGYIKVGEVMKARELFEKMPE-----KNVVS 171
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390
+ M+ +A L A MP S +++S+ V H D +
Sbjct: 172 WTSMISAYAKAGDLATARMFFNKMPQRNVVS-WNSMISSYVQHGDFQ 217
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/493 (36%), Positives = 284/493 (57%), Gaps = 36/493 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y C
Sbjct: 90 MLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGC 149
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYA 118
+ A ++F++MP++D +++NSM+D + CG + A +L DLMP +K++ S+N MISGYA
Sbjct: 150 LGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYA 209
Query: 119 RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW----- 172
+ ++ A +F ++P KD++SWNSLI Y G ME A ++F M ++V+TW
Sbjct: 210 QTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMID 269
Query: 173 --------------------------NTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
N+M+ GY++++ ++E +++F+ M K ++ PD
Sbjct: 270 GYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDET 329
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L ++ Y + ALIDM++KCGSI+Q++ VF
Sbjct: 330 TLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFEGI 389
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG+G A +L ++ +K DDITFIG+L+ACSH+GLV+EG
Sbjct: 390 KNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGL 449
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGC+VD+L R+ ++ A LIE MP EP + I L AC
Sbjct: 450 LSFELMRRKHKIEPRLQHYGCIVDILSRSGSIELAKHLIEDMPMEPNDVIWRTFLIACRN 509
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
++ EIG+ VAK + ++ Y + ++ +N+YAS G W++ R R MM + K G
Sbjct: 510 RKEFEIGELVAKHLILQAGY-NPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGC 568
Query: 446 SVIEVNGSYHKFL 458
S IE++G+ H+F
Sbjct: 569 SWIELDGNVHEFF 581
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/410 (22%), Positives = 175/410 (42%), Gaps = 66/410 (16%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGS---------LRCIDDAFK--VFEKMPEKDIIAWN 80
+H + IKTGF + + T ++ + + RC+ + F +D WN
Sbjct: 9 IHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLWN 68
Query: 81 S-----------------------------------MLDAFASCGQMDHAMKLIDLMP-- 103
+ +L A + G + M++ +
Sbjct: 69 AVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKT 128
Query: 104 --LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
D+ N +I Y + G + AR IFD++P +D VS+NS+I Y G + A E+F
Sbjct: 129 GIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELF 188
Query: 162 KKML--VKNVITWNTMVTGYLRSQLYIEVVD-LFDEMKAGNVKPDYLTVTSVLSACANLG 218
M +KN+I+WN+M++GY ++ + + LF EM + D ++ S++ G
Sbjct: 189 DLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMP----EKDLISWNSLIDGYVKHG 244
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+E + + + +ID YAK G + ++ +F + +DV +N+M+
Sbjct: 245 RMEDAKDLFYVMPRRDVVT----WATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMA 300
Query: 279 GLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFG 336
G + Y AL++ M DS + D+ T + +LSA + G + + + + EK F
Sbjct: 301 GYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFP 360
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+ KL ++D+ + + +AI + E + + + A++ IH
Sbjct: 361 LGGKLG--VALIDMHSKCGSIQQAISVFEGIKNKSIDH-WNAMIGGLAIH 407
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 18/158 (11%)
Query: 225 RIHVYATDNGLASNPHATTALI-----------DMYAKCGSIEQSLEVFYKSQVKDVFCW 273
+IH G N + TT ++ +A+C F +V+D F W
Sbjct: 8 QIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLW 67
Query: 274 NAMILGLALHGYGY---AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
NA+I H +G AL M ++ V D + +L ACS G VQEG ++
Sbjct: 68 NAVIKS---HSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGF 124
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ K G+ L C++ L + L A ++ + MP
Sbjct: 125 LRKT-GIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMP 161
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 178/465 (38%), Positives = 265/465 (56%), Gaps = 37/465 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
V +YSF L+KA +L S G +HG K GF HV+VQT L++ Y +
Sbjct: 71 NVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTF------ 124
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
G + + ++ D MP +DV ++ MIS + R G +
Sbjct: 125 -------------------------GDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMA 159
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SA +FD++P K+V +WN++I Y G E A +F +M +++I+W TM+ Y R++
Sbjct: 160 SAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKR 219
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
Y EV+ LF ++ + PD +T+T+V+SACA+LG+L G +H+Y G + + ++
Sbjct: 220 YKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSS 279
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LIDMYAKCGSI+ +L VFYK Q K++FCWN +I GLA HGY AL++ GEM ++ +
Sbjct: 280 LIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPN 339
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+TFI +L+AC+HAG ++EG F M +D+ + ++EHYGCMVDLL +A LL+ A+E+I
Sbjct: 340 AVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMI 399
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCG 422
M EP I GALL+ C +H++LEI + MV SN G + N+YA
Sbjct: 400 RNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSN---SGHYSLLVNMYAEEN 456
Query: 423 QWEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLAGGIGHLS 466
+W E + R M D G+ K GSS +E+N + H F A H S
Sbjct: 457 RWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVHLFAASDTYHPS 501
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 12/291 (4%)
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
+D N I A +N + A F + NV+ +N ++ G + + + +
Sbjct: 7 TQDCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMH 66
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M NV P + +S++ AC L G +H + +G S+ T LI+ Y+ G
Sbjct: 67 MLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGD 126
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ S VF +DVF W MI G +A +L EM + V T+ ++
Sbjct: 127 VGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVA----TWNAMIDG 182
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---P 371
G + LF++M R + + M++ R + I L + + P
Sbjct: 183 YGKLGNAESAEFLFNQMP-----ARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIP 237
Query: 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
E + ++SAC L +G V + + L ++YA CG
Sbjct: 238 DEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCG 288
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 190/513 (37%), Positives = 287/513 (55%), Gaps = 48/513 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ + ++FP LLK+ + G +HG +K GF +YV T+L+ MY
Sbjct: 66 MISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGR 125
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF++ +D++++ +++ +AS G ++ A K+ D +P+KDV S+N MISGYA
Sbjct: 126 LEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAET 185
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F ++ P + V SW
Sbjct: 186 GNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIV 245
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GE+E A E+ + + K+VI+WNT++ GY LY E + LF EM
Sbjct: 246 NALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 305
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGL----ASNPHA-TTALIDMYAKCGSIE 256
P+ +T+ S+L ACA+LG+++ G IHVY D L +N + T+LIDMYAKCG I+
Sbjct: 306 PNDVTMLSILPACAHLGAIDIGRWIHVY-IDKKLKGVVVTNASSLRTSLIDMYAKCGDID 364
Query: 257 QSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+ +V S + + WNAMI G A+HG AA + M + ++ DDITF+GLLSAC
Sbjct: 365 AAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 424
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
SH+G++ G +F M +D+ +T KLEHYGCM+DLLG + L A E+I MP EP I
Sbjct: 425 SHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVI 484
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
+LL AC IH +LE+G+ AK + K + G ++ +N+YA+ G+W E + R ++N
Sbjct: 485 WCSLLKACKIHGNLELGESFAKKLI-KIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLN 543
Query: 436 DTGI-VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
D G+ K G S IE++ H+F+ G H N
Sbjct: 544 DKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQN 576
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 32/239 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F+ + N + WN M G+ S + + L+ M + + P++ T +L +CA +
Sbjct: 31 VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ------------- 266
+ G +IH + G + + T+LI MYA+ G +E + +VF +S
Sbjct: 91 FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITG 150
Query: 267 ------------------VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
+KDV WNAMI G A G AL+L EM + VK D+ T
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
++SAC+ +G ++ G ++ S + D G L+ ++DL + ++ A EL+E +
Sbjct: 211 ATVVSACAQSGSIELGRQVHSWI-NDHGFGSNLKIVNALIDLYSKCGEVETACELLEGL 268
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 182/499 (36%), Positives = 288/499 (57%), Gaps = 40/499 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV ++Y+FP LLK+ L+S+ G +H +K GF V++ T+L+ MY +++A
Sbjct: 124 GVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNA 183
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF++ +D I++ +++ +A G MD A +L D MP+KDV S+N MI+GYA++G+
Sbjct: 184 QLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSK 243
Query: 125 SARYIFD-----KVPAKDVV---------------------SW-------------NSLI 145
A +F+ VP + SW N+LI
Sbjct: 244 EALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALI 303
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y+ G+++ A E+F ML ++VI+WN M+ GY Y E + LF EM A V+P +
Sbjct: 304 DMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEI 363
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T S+L +CA+LG+++ G IH Y N + + +T+LID+YAKCG+I + +VF
Sbjct: 364 TFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGM 423
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
++K + WNAMI GLA+HG A +L +M+ ++ ++ITF+G+LSAC HAGLV G
Sbjct: 424 KIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQ 483
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
+ FS M +D+ ++ K +HYGCM+DLLGRA L + A L++ M +P +I G+LL AC
Sbjct: 484 QFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRD 543
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H +E+G+ VA+ + + + G ++ +N+YA G+W++ R R +ND G+ K G
Sbjct: 544 HGRVELGELVAERLF-ELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGC 602
Query: 446 SVIEVNGSYHKFLAGGIGH 464
+ IEV+ H+FL G H
Sbjct: 603 TTIEVDNVVHEFLVGDKVH 621
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 121/426 (28%), Positives = 191/426 (44%), Gaps = 74/426 (17%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRC--IDDAFKVFEKMPEKDIIAWNSMLDAFA-- 87
+H IKTG ++ + L++ R I A +F + E ++ WNSM+ +
Sbjct: 48 IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMS 107
Query: 88 ------------------------------SCGQM--DHAMKLIDLMPLK-----DVTSF 110
SC ++ H K I LK DV
Sbjct: 108 LSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIH 167
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+I+ YA+ G++++A+ +FD+ +D +S+ +LI Y G M++A ++F +M VK+V+
Sbjct: 168 TSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVV 227
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN M+ GY + E + LF++M+ NV P+ T+ SVLSACA +L+ G + +
Sbjct: 228 SWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWI 287
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
D GL SN ALIDMY+KCG ++ + E+F +DV WN MI G AL
Sbjct: 288 EDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEAL 347
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT------------ 338
L EM S V+ +ITF+ +L +C+H G + G + + + K+F
Sbjct: 348 ALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLY 407
Query: 339 ------------------RKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILG 377
+ L + M+ L D+A EL M EP E
Sbjct: 408 AKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFV 467
Query: 378 ALLSAC 383
+LSAC
Sbjct: 468 GILSAC 473
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 134/342 (39%), Gaps = 66/342 (19%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A + +G++ A +F + N+ WN+M+ G S + F M V+P+ T
Sbjct: 72 AVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYT 131
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+L +CA L S G +IH + G S+ T+LI+MYA+ G + + VF +S
Sbjct: 132 FPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSN 191
Query: 267 -------------------------------VKDVFCWNAMILGLALHGYGYAALKLLGE 295
VKDV WNAMI G A G AL L +
Sbjct: 192 FRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFED 251
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + V ++ T + +LSAC+ + + G + S +E D G+ L+ ++D+ +
Sbjct: 252 MRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIE-DRGLCSNLKLVNALIDMYSKCG 310
Query: 356 LLDRAIELIEAM----------------------------------PFEPTESILGALLS 381
L A EL + M EPTE ++L
Sbjct: 311 DLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILP 370
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
+C +++G + + N +S +LYA CG
Sbjct: 371 SCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGN 412
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 176/456 (38%), Positives = 272/456 (59%), Gaps = 3/456 (0%)
Query: 10 NYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFE 69
+Y+F L+LK + + G +HG +K FC +YV T+L+ MY + A KVF+
Sbjct: 123 SYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFD 182
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
+M + +++W +++ +A CG M A KL D M +DV +FN+MI GY ++G++ AR +
Sbjct: 183 EMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARDL 242
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FDK+ K+V+SW S++ Y+ G++++A +F M KNV++WN M+ GY ++ + +
Sbjct: 243 FDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDAL 302
Query: 190 DLFDEMKAG-NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
LF EM+ +V+ + +TV SVL A A+L +L+ G +H + N L + H AL+DM
Sbjct: 303 KLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDM 362
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YAKCG I ++ VF + KD WNA+I G ++G AL++ M + + IT
Sbjct: 363 YAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITM 422
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+LSAC+H GLV+EG F ME+ FG+ ++EHYGCM+DLLGRA LD A +LI+AMP
Sbjct: 423 TSVLSACNHCGLVEEGRRCFEAMER-FGIVPQIEHYGCMIDLLGRAGRLDEAEKLIQAMP 481
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
++P E IL + L AC +D+ +R+ K V K G+ +M NLYA+ +W +
Sbjct: 482 YDPNEIILTSFLFACCYFEDVSRAERILK-VAVKMEKEGAGDYVMLRNLYATERRWADVE 540
Query: 429 RWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ MM G K SVIEV+G + +F+AG H
Sbjct: 541 DVKEMMKKRGSNKEVAWSVIEVDGRFREFVAGYYSH 576
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 10/197 (5%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
NT++ + + + L+++ K +P T T +L C+ + G +IH
Sbjct: 91 NTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLILKGCSVSDAKRQGFQIHGVVL 150
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N + + T+L+DMY K G + + +VF + V+ + W A+I+G A G A K
Sbjct: 151 KNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARK 210
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L M D V A ++ G + G + +LF +M + + + MV
Sbjct: 211 LFDGMVDRDVAAFNVMIDGYVK----MGRMDLARDLFDKMR-----VKNVISWTSMVHGY 261
Query: 352 GRARLLDRAIELIEAMP 368
+D A L + MP
Sbjct: 262 SEDGDVDEARFLFDCMP 278
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/508 (36%), Positives = 282/508 (55%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++YSFP LLK+ + G +HG +K G+ +YV T+L+ MY
Sbjct: 56 MISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGR 115
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
++DA KVF++ + ++++ +++ +AS G +++A KL D + +KDV S+N MISGY
Sbjct: 116 LEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVET 175
Query: 118 --------------------------------ARIGKIHSAR----YIFDKVPAKDVVSW 141
A+ G I R +I D ++
Sbjct: 176 CNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIV 235
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N LI Y+ GE+E A +F+ + K+VI+WNT++ G+ LY E + LF EM
Sbjct: 236 NVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES 295
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ SVL ACA+LG+++ G IHVY G+ + T+LIDMYAKCG IE +
Sbjct: 296 PNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAK 355
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF + + WNAMI G A+HG AA L +M + + DDITF+GLLSACSH+G
Sbjct: 356 QVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSG 415
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M +D+ +T KLEHYGCM+DLLG L A E+I MP EP I +L
Sbjct: 416 MLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSL 475
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC +H ++E+G+ A+ + K + G ++ +N+YA+ G+W++ + R ++ND GI
Sbjct: 476 LKACKMHNNVELGESYAQNLI-KIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGI 534
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 535 KKAPGCSSIEIDSVVHEFIIGDKFHPRN 562
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F+ + N++ WNTM G+ + + + L+ M + + P+ + +L +CA +
Sbjct: 21 IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKA 80
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS-------------- 265
L G +IH + G + + T+LI MYA+ G +E + +VF +S
Sbjct: 81 LIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITG 140
Query: 266 -----------------QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
VKDV WNAMI G AL+L +M + VK D+ T
Sbjct: 141 YASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTM 200
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ ++SAC+ +G ++ G +L S +E D G ++ ++DL + ++ A L + +
Sbjct: 201 VTVVSACAQSGSIELGRQLHSWIE-DHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGL 258
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 188/508 (37%), Positives = 282/508 (55%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP LLK+ + G +HGQ +K GF +YV T+L+ MY
Sbjct: 55 MVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWR 114
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA+KVF++ +D++++ +++ +AS G + A KL D +P+KDV S+N MISGYA
Sbjct: 115 LEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAET 174
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F+++ P + V SW
Sbjct: 175 GCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIV 234
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GE+E A +F+ + K+VI+WNT++ GY LY E + LF EM
Sbjct: 235 NALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 294
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ SVL ACA+LG+++ G IHVY G+ + T+LIDMYAKCG IE +
Sbjct: 295 PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 354
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF K + WNAMI G A+HG A+ L M ++ DDITF+GLLSACSH+G
Sbjct: 355 QVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSG 414
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M +D+ +T KLEHYGCM+DLLG + L A E+I M EP I +L
Sbjct: 415 MLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 474
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC +H ++E+ + A+ + K + ++ +N+YAS G+WE+ R R ++N +
Sbjct: 475 LKACKMHGNVELAESFAQNL-IKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCM 533
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IEV+ +F+ G H N
Sbjct: 534 KKVPGCSSIEVDSVVFEFVVGDKFHPQN 561
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 157/344 (45%), Gaps = 40/344 (11%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL----IDLMPLKDVTSFNIMISGYAR 119
A VFE + E + + WN+M+ A ++ L + L L + +F ++ A+
Sbjct: 17 ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76
Query: 120 IGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ I +V D+ SLI Y +E A ++F + ++V+++ +
Sbjct: 77 SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136
Query: 176 VTGY-----LRSQ--------------------------LYIEVVDLFDEMKAGNVKPDY 204
+TGY +RS Y E ++LF+EM NV+PD
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T +VLSACA+ GS+E G ++H + D+G SN ALID+Y+KCG +E + +F
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
KDV WN +I G AL L EM S +D+T + +L AC+H G + G
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIG 316
Query: 325 CELFSRMEKDF-GVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ ++K GVT ++D+ + ++ A ++ +M
Sbjct: 317 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 360
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 112/245 (45%), Gaps = 32/245 (13%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F+ + N + WNTM+ G+ S + + L+ M + + P+ T +L +CA
Sbjct: 17 ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ---------- 266
+ G +IH G + + T+LI MY + +E + +VF +S
Sbjct: 77 SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136
Query: 267 ---------------------VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
VKDV WNAMI G A G AL+L EM V+ D+
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
T++ +LSAC+H+G ++ G ++ S ++ D G L+ ++DL + ++ A L +
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVD-DHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255
Query: 366 AMPFE 370
+ ++
Sbjct: 256 GLSYK 260
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 181/502 (36%), Positives = 274/502 (54%), Gaps = 48/502 (9%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ ++FP+L+KA +G +HG IKT F V+V +L+ Y S +D A+ V
Sbjct: 238 PNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLV 297
Query: 68 FEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---------------------- 103
FE + KDI++WNSM+ F G D A+ L + M
Sbjct: 298 FEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTM 357
Query: 104 -----------------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
+ ++ N I + + G++ AR +FD + +DVVSW ++I
Sbjct: 358 NLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIID 417
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK--AGNVKPDY 204
Y E A ++F M K++ WN +++GY +S E + +F E++ +PD
Sbjct: 418 GYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQ 477
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+T+ S LSACA LG+++ G IH Y + N + T+LIDMY+K G +E+++EVF+
Sbjct: 478 VTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHS 537
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
KDVF W+AMI GLA+HG G AA++L +M ++ VK + +TF LL ACSH+GLV EG
Sbjct: 538 IGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEG 597
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
LF ME+ +GV K +HY CMVD+LGRA L+ A++ IE MP P+ S+ GALL AC
Sbjct: 598 KRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACC 657
Query: 385 IHQDLEIGDRVAKMV--CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
IH +LE+ ++ + N+ G ++ +NLYA G WE + R M D+G+ K
Sbjct: 658 IHGNLELAEKACSRLLEIEPGNH---GAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKE 714
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
G S IE++G+ H+F+ G H
Sbjct: 715 TGCSSIEIDGTVHEFIVGDNAH 736
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 176/384 (45%), Gaps = 51/384 (13%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+H Q ++T Y + L + S +D A KVF+++P+ ++ +WN ++ A A+
Sbjct: 158 IHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATS 217
Query: 90 GQMDHA----MKLIDLMPL-KDVTSFNIMISGYAR-----IGKIHSARYIFDKVPAKDVV 139
+ ++++ P + +F ++I A +GK I DV
Sbjct: 218 SDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSF-GDDVF 276
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKML--VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
NSLI Y + G ++ A +F+ + K++++WN+MVTG+++ + +DLF+ M+
Sbjct: 277 VLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRN 336
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE- 256
V P+ +T+ SV+SACA +L G ++ Y N + N + A IDM+ KCG +E
Sbjct: 337 EGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEI 396
Query: 257 ------------------------------QSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+ ++F KD+ WN +I G G
Sbjct: 397 ARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRP 456
Query: 287 YAALKLLGEMN--DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEH 343
AL + E+ S + D +T + LSAC+ G + G + ++K+ + R L
Sbjct: 457 KEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLA- 515
Query: 344 YGCMVDLLGRARLLDRAIELIEAM 367
++D+ ++ +++AIE+ ++
Sbjct: 516 -TSLIDMYSKSGDVEKAIEVFHSI 538
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 149/331 (45%), Gaps = 51/331 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GVH + + ++ A + +G + + ++ V A + M+
Sbjct: 334 MRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGE 393
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A +F+ M ++D+++W +++D +A + A + D MP KD+ ++N++ISGY +
Sbjct: 394 VEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQS 453
Query: 121 GKIHSARYIF------------DKVP------------AKDVVSW--------------- 141
G+ A IF D+V A D+ W
Sbjct: 454 GRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRN 513
Query: 142 --NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
SLI Y+ +G++EKA E+F + K+V W+ M+ G ++LF +M+
Sbjct: 514 LATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQ 573
Query: 200 VKPDYLTVTSVLSACANLGSLETGARI-----HVYATDNGLASNPHATTALIDMYAKCGS 254
VKP+ +T T++L AC++ G ++ G R+ VY G+ + ++D+ + G
Sbjct: 574 VKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVY----GVVPKTKHYSCMVDVLGRAGH 629
Query: 255 IEQSLEVFYKSQV-KDVFCWNAMILGLALHG 284
+E++L+ + W A++ +HG
Sbjct: 630 LEEALKFIEGMPLAPSASVWGALLGACCIHG 660
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/492 (34%), Positives = 283/492 (57%), Gaps = 35/492 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ++G+ ++++F +L A L +G H + +K GF +V+V L+ MY C
Sbjct: 157 MQDVGIQPNHFTFASILPACTDLE--VLG-EFHDEIVKGGFESNVFVGNGLVDMYAKRGC 213
Query: 61 ID-------------------------------DAFKVFEKMPEKDIIAWNSMLDAFASC 89
I+ DA K+F+++P++D+I WN+M+ +A C
Sbjct: 214 IEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQC 273
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
G +++A++L + MP +++ S+N MI+GY + G + A +F +P ++V+SWN++I +
Sbjct: 274 GDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFA 333
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G++E+A ++FK M NV++WN M+ GY ++ + LF +M+ ++KP+ T
Sbjct: 334 QNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAI 393
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
VL ACA L LE G H +G S+ L+ MYAKCGSIE + +VF + + +D
Sbjct: 394 VLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQD 453
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+AMI+G A++G +L+L +M + +K D +TF+G+LSAC HAGLV EG + F
Sbjct: 454 SASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFD 513
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M + + +T +EHYGCM+DLLGRA D A +LI MP +P + G+LLSAC H ++
Sbjct: 514 IMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNI 573
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
++G++VA+ + A N + ++ +N+YA+ G+W++ RN M D + K G S I
Sbjct: 574 DLGEKVAQHLIA-LNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIV 632
Query: 450 VNGSYHKFLAGG 461
+ H FL GG
Sbjct: 633 IKKQVHAFLVGG 644
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 181/363 (49%), Gaps = 45/363 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGSLR 59
M E G+ + ++ LL+ S +LH I+T F C + + L+ +Y L
Sbjct: 55 MVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLG 114
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA------MKLIDLMP---------- 103
+ +A +VF++MP K++++W +M+ A+A A M+ + + P
Sbjct: 115 SLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILP 174
Query: 104 ----LKDVTSF----------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
L+ + F N ++ YA+ G I AR +FDK+P +DVVSWN+
Sbjct: 175 ACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNA 234
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+I Y G +E A ++F+++ ++VITWNTM+ GY + V+LF++M N+
Sbjct: 235 MIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNL--- 291
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
++ ++++ GS++ ++ + + S A+I +A+ G +E++L++F
Sbjct: 292 -VSWNTMIAGYVQNGSVKEAFKLFQIMPERNVIS----WNAVISGFAQNGQVEEALKLFK 346
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+V WNAMI G + +G ALKL G+M +K + TF +L AC+ ++++
Sbjct: 347 TMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQ 406
Query: 324 GCE 326
G E
Sbjct: 407 GNE 409
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 12/247 (4%)
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
K+ A I + +D+ N L+ Y G + +A +F +M VKNV++W M+ Y R
Sbjct: 84 KLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYAR 143
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ E + F EM+ ++P++ T S+L AC + LE H G SN
Sbjct: 144 HEHGQEALGFFYEMQDVGIQPNHFTFASILPACTD---LEVLGEFHDEIVKGGFESNVFV 200
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
L+DMYAK G IE + E+F K +DV WNAMI G +G ALKL E+
Sbjct: 201 GNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP---- 256
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
K D IT+ +++ + G V+ ELF +M + + L + M+ + + A
Sbjct: 257 KRDVITWNTMMAGYAQCGDVENAVELFEKMPE-----QNLVSWNTMIAGYVQNGSVKEAF 311
Query: 362 ELIEAMP 368
+L + MP
Sbjct: 312 KLFQIMP 318
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 176/495 (35%), Positives = 281/495 (56%), Gaps = 36/495 (7%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y C+
Sbjct: 114 ENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLG 173
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL------------------ 104
+ ++F++MP++D +++NSM+D + CG + A +L DLMP+
Sbjct: 174 LSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQT 233
Query: 105 ----------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
KD+ S+N MI GY + G+I A+ +FD +P +DVV+W ++I Y
Sbjct: 234 SDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGY 293
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTV 207
G + A +F +M ++V+ +N+M+ GY++++ ++E +++F +M K ++ PD T+
Sbjct: 294 AKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTL 353
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
VL A A LG L +H+Y + ALIDMY+KCGSI+ ++ VF +
Sbjct: 354 VIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIEN 413
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
K + WNAMI GLA+HG G +A +L ++ +K DDITF+G+L+ACSH+GLV+EG
Sbjct: 414 KSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLC 473
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC H+
Sbjct: 474 FELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHK 533
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
+ E G+ VAK + ++ Y + ++ +N+YAS G W++ R R MM + I K G S
Sbjct: 534 EFETGELVAKHLILQAGY-NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSW 592
Query: 448 IEVNGSYHKFLAGGI 462
IE++G H+F I
Sbjct: 593 IELDGRVHEFFVDSI 607
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 158/364 (43%), Gaps = 61/364 (16%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGS---------LRCIDDAFKV--FEKMPEKDIIAWN 80
+HG+ IKTG + + T ++ + S RC+ + V F +D WN
Sbjct: 31 IHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLWN 90
Query: 81 S-----------------------------------MLDAFASCGQMDHAMKLIDLMP-- 103
+ +L A + G + M++ +
Sbjct: 91 AVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKT 150
Query: 104 --LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
D+ N +I Y + G + +R +FD++P +D VS+NS+I Y G + A E+F
Sbjct: 151 GLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELF 210
Query: 162 K--KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
M +KN+I+WN+M++GY ++ + VD+ ++ A + D ++ S++ G
Sbjct: 211 DLMPMEMKNLISWNSMISGYAQTS---DGVDIASKLFADMPEKDLISWNSMIDGYVKHGR 267
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+E + + + +ID YAK G + + +F + +DV +N+M+ G
Sbjct: 268 IEDAKGLFDVMPRRDVVT----WATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAG 323
Query: 280 LALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCEL-FSRMEKDFGV 337
+ Y AL++ +M +S + DD T + +L A + G + + ++ +EK F +
Sbjct: 324 YVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYL 383
Query: 338 TRKL 341
KL
Sbjct: 384 GGKL 387
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 6/203 (2%)
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V++ WN ++ + + + + L M V D +++ VL AC+ LG ++ G +
Sbjct: 83 VEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQ 142
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
IH + GL S+ LI +Y KCG + S ++F + +D +N+MI G G
Sbjct: 143 IHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGL 202
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
+A +L M + I S S +G ++ S++ D + L +
Sbjct: 203 IVSARELFDLM-----PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMP-EKDLISWN 256
Query: 346 CMVDLLGRARLLDRAIELIEAMP 368
M+D + ++ A L + MP
Sbjct: 257 SMIDGYVKHGRIEDAKGLFDVMP 279
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 209 SVLSACANLGSLETG---ARIHVYATDNGLASNPHATTALIDMYA-----------KCGS 254
S+ S LGS +T +IH G+ N + TT ++ +A +C
Sbjct: 11 SISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVF 70
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGL 311
E + F +V+D F WNA+I H +G AL LL M ++ V D + +
Sbjct: 71 HEYHVCSFSFGEVEDPFLWNAVIKS---HSHGKDPRQALLLLCLMLENGVSVDKFSLSLV 127
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
L ACS G V+ G ++ ++K G+ L C++ L + L + ++ + MP
Sbjct: 128 LKACSRLGFVKGGMQIHGFLKKT-GLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP 183
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 176/495 (35%), Positives = 281/495 (56%), Gaps = 36/495 (7%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y C+
Sbjct: 107 ENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLG 166
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL------------------ 104
+ ++F++MP++D +++NSM+D + CG + A +L DLMP+
Sbjct: 167 LSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQT 226
Query: 105 ----------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
KD+ S+N MI GY + G+I A+ +FD +P +DVV+W ++I Y
Sbjct: 227 SDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGY 286
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTV 207
G + A +F +M ++V+ +N+M+ GY++++ ++E +++F +M K ++ PD T+
Sbjct: 287 AKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTL 346
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
VL A A LG L +H+Y + ALIDMY+KCGSI+ ++ VF +
Sbjct: 347 VIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIEN 406
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
K + WNAMI GLA+HG G +A +L ++ +K DDITF+G+L+ACSH+GLV+EG
Sbjct: 407 KSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLC 466
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC H+
Sbjct: 467 FELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHK 526
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
+ E G+ VAK + ++ Y + ++ +N+YAS G W++ R R MM + I K G S
Sbjct: 527 EFETGELVAKHLILQAGY-NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSW 585
Query: 448 IEVNGSYHKFLAGGI 462
IE++G H+F I
Sbjct: 586 IELDGRVHEFFVDSI 600
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 158/364 (43%), Gaps = 61/364 (16%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGS---------LRCIDDAFKV--FEKMPEKDIIAWN 80
+HG+ IKTG + + T ++ + S RC+ + V F +D WN
Sbjct: 24 IHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLWN 83
Query: 81 S-----------------------------------MLDAFASCGQMDHAMKLIDLMP-- 103
+ +L A + G + M++ +
Sbjct: 84 AVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKT 143
Query: 104 --LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
D+ N +I Y + G + +R +FD++P +D VS+NS+I Y G + A E+F
Sbjct: 144 GLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELF 203
Query: 162 K--KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
M +KN+I+WN+M++GY ++ + VD+ ++ A + D ++ S++ G
Sbjct: 204 DLMPMEMKNLISWNSMISGYAQTS---DGVDIASKLFADMPEKDLISWNSMIDGYVKHGR 260
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+E + + + +ID YAK G + + +F + +DV +N+M+ G
Sbjct: 261 IEDAKGLFDVMPRRDVVT----WATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAG 316
Query: 280 LALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCEL-FSRMEKDFGV 337
+ Y AL++ +M +S + DD T + +L A + G + + ++ +EK F +
Sbjct: 317 YVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYL 376
Query: 338 TRKL 341
KL
Sbjct: 377 GGKL 380
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 6/203 (2%)
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V++ WN ++ + + + + L M V D +++ VL AC+ LG ++ G +
Sbjct: 76 VEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQ 135
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
IH + GL S+ LI +Y KCG + S ++F + +D +N+MI G G
Sbjct: 136 IHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGL 195
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
+A +L M + I S S +G ++ S++ D + L +
Sbjct: 196 IVSARELFDLM-----PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMP-EKDLISWN 249
Query: 346 CMVDLLGRARLLDRAIELIEAMP 368
M+D + ++ A L + MP
Sbjct: 250 SMIDGYVKHGRIEDAKGLFDVMP 272
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 209 SVLSACANLGSLETG---ARIHVYATDNGLASNPHATTALIDMYA-----------KCGS 254
S+ S LGS +T +IH G+ N + TT ++ +A +C
Sbjct: 4 SISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVF 63
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGL 311
E + F +V+D F WNA+I H +G AL LL M ++ V D + +
Sbjct: 64 HEYHVCSFSFGEVEDPFLWNAVIKS---HSHGKDPRQALLLLCLMLENGVSVDKFSLSLV 120
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
L ACS G V+ G ++ ++K G+ L C++ L + L + ++ + MP
Sbjct: 121 LKACSRLGFVKGGMQIHGFLKKT-GLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP 176
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/460 (38%), Positives = 267/460 (58%), Gaps = 32/460 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M V D Y+F LK+ G S G +HG +KTG +++Q L+ +Y
Sbjct: 99 MLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLY----- 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ASCG ++ A L+D M +DV S+N ++S YA
Sbjct: 154 --------------------------ASCGCIEDARHLLDRMLERDVVSWNALLSAYAER 187
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A ++FD++ ++V SWN +I Y G +E+A +F + VKNV++WN M+TGY
Sbjct: 188 GLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYS 247
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + EV+ LF++M+ VKPD T+ SVLSACA++G+L G +H Y NG++ +
Sbjct: 248 HAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGF 307
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TAL+DMY+KCGSIE++LEVF KD+ WN++I GL+ HG G AL++ EM
Sbjct: 308 VATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEG 367
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
K +++TF+ +LSACS AGL+ EG E+F+ M G+ +EHYGCMVDLLGR LL+ A
Sbjct: 368 FKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEA 427
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
EL++ MP + + +LL AC H ++E+ +RVA+ + S S + +N+YAS
Sbjct: 428 EELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSS-FVQLSNMYAS 486
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G+W++ R M G+ K G S+IEV+G+ ++FLAG
Sbjct: 487 MGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAG 526
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 134/332 (40%), Gaps = 17/332 (5%)
Query: 102 MPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT---NAGEMEKAG 158
P + SF M + + + + H+ +I + + LI + + +A + A
Sbjct: 5 FPPPPILSFAEMATSISELHQAHA--HILKSGLIHSTFAASRLIASVSTNSHAQAIPYAH 62
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+F ++ N WNT++ Y S + +F +M +V PD T T L +C +
Sbjct: 63 SIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFS 122
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+E G +IH + GL + LI +YA CG IE + + + +DV WNA++
Sbjct: 123 GVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLS 182
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
A G A L EM + V++ + G + GL++E +F
Sbjct: 183 AYAERGLMELACHLFDEMTERNVESWNFMISGYVG----VGLLEEARRVFGETP-----V 233
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRV 395
+ + + M+ A + L E M +P L ++LSAC L G+ V
Sbjct: 234 KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWV 293
Query: 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
+ + ++Y+ CG E+A
Sbjct: 294 HAYIDKNGISIDGFVATALVDMYSKCGSIEKA 325
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 177/505 (35%), Positives = 281/505 (55%), Gaps = 42/505 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++++ DN+ P +LKA G +S + +G +HG +K G V+V AL+ MYG C
Sbjct: 115 LRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECAC 174
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-------- 112
++ A VF+KM E+D+++W++M+ + + + D A++LI M V +
Sbjct: 175 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 234
Query: 113 ---------------------------------MISGYARIGKIHSARYIFDKVPAKDVV 139
++ YA+ G + AR +F+ + K VV
Sbjct: 235 FADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVV 294
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
SW ++I + +E+A +F ++V+ W M++ Y ++ + +LFD+M+
Sbjct: 295 SWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 354
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V+P +T+ S+LS CA G+L+ G +H Y + + TAL+DMYAKCG I +
Sbjct: 355 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAG 414
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F ++ +D+ WNA+I G A+HGYG AL + EM VK +DITFIGLL ACSHAG
Sbjct: 415 RLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 474
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
LV EG +LF +M FG+ ++EHYGCMVDLLGRA LLD A E+I++MP +P + GAL
Sbjct: 475 LVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGAL 534
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
++AC +H++ ++G+ A + + + G ++ +N+YA+ +W +A R M G+
Sbjct: 535 VAACRLHKNPQLGELAATQLL-EIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGM 593
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGH 464
K G SVIEVNG+ H+FL G H
Sbjct: 594 KKEPGHSVIEVNGTVHEFLMGDQSH 618
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 124/324 (38%), Gaps = 66/324 (20%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++T Y + ++++ +++ + + D SVL AC + + G IH +
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
GL + AL+ MY +C +E + VF K +DV W+ MI L+ + AL+
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211
Query: 292 LLGEMNDSCVKADDITFIGLL--------------------------------------- 312
L+ EMN V+ ++ + ++
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271
Query: 313 -SACSHAGLVQE------------------GCELFSRMEK-----DFGVTRKLEHYGCMV 348
+ C H GL ++ GC +R+E+ D R + + M+
Sbjct: 272 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAML 331
Query: 349 DLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
+A +D+A L + M PT+ + +LLS C + L++G V + +
Sbjct: 332 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVE 391
Query: 406 LSDGELMMFANLYASCGQWEEANR 429
+ ++YA CG A R
Sbjct: 392 VDCILNTALVDMYAKCGDINAAGR 415
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 180/493 (36%), Positives = 279/493 (56%), Gaps = 36/493 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E V D +S L LKA L G +HG IKTG +++Q L+ +Y
Sbjct: 97 MLESSVPVDKFSLSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGF 156
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFNIMISGYA 118
+ A +VF++MPE+D +++NSM+D + CG ++ A +L DLMP +++ ++N MI GYA
Sbjct: 157 LGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYA 216
Query: 119 -RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW----- 172
R + A +FD++P KD++SWNS+I Y G +E A +F M ++V+TW
Sbjct: 217 QRADGVDVAEKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMID 276
Query: 173 --------------------------NTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
N+M++GY++++ ++E +++F+ M K ++ PD
Sbjct: 277 GYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDET 336
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
++ VLSA A LG L +H+Y + + ALIDMY+KCGSI+ ++ VF
Sbjct: 337 SLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSKCGSIQHAMRVFEGI 396
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G +A +L ++ +K D ITF+G+L+ACSH+GLV+EG
Sbjct: 397 ESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGL 456
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ + A LIE MP EP + I L+AC
Sbjct: 457 LCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSH 516
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E G+ VAK + Y + ++ +N+YAS G W++ R R MM + I K G
Sbjct: 517 HKEFETGELVAKHLILXGGY-NPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGC 575
Query: 446 SVIEVNGSYHKFL 458
S IE++G H+FL
Sbjct: 576 SWIELDGRVHEFL 588
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 27/173 (15%)
Query: 217 LGSLETGA---RIHVYATDNGLASNPHATTALI---------------DMYAKCGSIEQS 258
LGS +T ++H GL NP TT ++ +A+C +
Sbjct: 2 LGSCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASSRRPFLAEFARC--VFHE 59
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGLLSAC 315
V +V+D F WN +I H +G AL LL M +S V D + L AC
Sbjct: 60 HHVSSSGEVEDPFLWNVVIKS---HSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKAC 116
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
S G V+EG ++ + K G L C++ L + L A ++ + MP
Sbjct: 117 SRLGFVKEGTQVHGFLIKT-GTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMP 168
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 187/509 (36%), Positives = 283/509 (55%), Gaps = 44/509 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP LLKA + G +HG +K G +YV T+L+ MY
Sbjct: 94 MISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGR 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+DA KVF++ +D++++ +++ +AS G + A K+ D +P+KDV S+N +ISGYA
Sbjct: 154 XEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAET 213
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F ++ P + V SW
Sbjct: 214 GNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y GE+E A +F+ + K+VI+WNT++ GY LY E + LF EM
Sbjct: 274 NALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGL--ASNPHA-TTALIDMYAKCGSIEQS 258
P+ +T+ S+L ACA+LG+++ G IHVY D L SNP + T+LIDMYAKCG IE +
Sbjct: 334 PNEVTMLSILPACAHLGAIDIGRWIHVY-IDKRLKGVSNPSSLRTSLIDMYAKCGDIEAA 392
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+VF + + WNAMI G A+HG A + M ++ DDITF+GLLSACSH+
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
G++ G +F M +D+ +T KLEHYGCM+DLLG + L A E+I +M +P I +
Sbjct: 453 GMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCS 512
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
LL AC +H ++E+G+ A+ + K + G ++ +N+YA+ G+W E + R ++ND G
Sbjct: 513 LLKACKMHGNVELGESFAQNLI-KIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKG 571
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
+ K G S IE++ H+F+ G H N
Sbjct: 572 MKKVPGCSSIEIDSVVHEFIIGDKLHPRN 600
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 165/401 (41%), Gaps = 78/401 (19%)
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K + S I+ + + G +H+ Y K+ V+S + L Y A +F +
Sbjct: 13 KTLQSLRIIHAKMIKTG-LHNTNYALSKLIEFSVLSPHFDGLTY--------AISVFDSI 63
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
N++ WNTM G+ S + + L+ M + + P+ T +L ACA + G
Sbjct: 64 QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ------------------ 266
+IH + G + + T+LI MY K G E + +VF +S
Sbjct: 124 QIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNG 183
Query: 267 -------------VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
VKDV WNA+I G A G AL+L EM + VK D+ T + +LS
Sbjct: 184 YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLS 243
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE--- 370
AC+ + ++ G ++ S ++ D G L+ ++DL + ++ A L E + ++
Sbjct: 244 ACAQSASIELGRQVHSWID-DHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVI 302
Query: 371 -------------------------------PTESILGALLSACVIHQDLEIGDRVAKMV 399
P E + ++L AC ++IG + +
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYI 362
Query: 400 CAKSNYLSDGELMMFA--NLYASCGQWEEANR-WRNMMNDT 437
+ +S+ + + ++YA CG E A + + +M+N +
Sbjct: 363 DKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRS 403
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 170/456 (37%), Positives = 269/456 (58%), Gaps = 32/456 (7%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+YS L+++A G L G LH Q +K G ++V+TAL++MY
Sbjct: 104 DSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMY------------- 150
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
A G ++ A ++D M D+ +N++++ Y R+G+I+ A
Sbjct: 151 ------------------AKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHD 192
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD++P +D+VSWN++I + + G++ A ++F + +++I+W++M+ Y +++ E
Sbjct: 193 LFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEA 252
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ LF EM+ NV PD +T+ SVLSAC ++G+L G IH N + + T+L+DM
Sbjct: 253 LRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDM 312
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YAKCG I+ SL VF +DVF W+AMI+GLA HG+G AL +M +K +D+TF
Sbjct: 313 YAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTF 372
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
IG+LSACSH GLV EG F+ M K + V+ K+EHYGC+VD+LGRA L A+ELI++MP
Sbjct: 373 IGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMP 432
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
F P + ALL AC I++++EI + + ++ DG ++ +N+Y+ +W++
Sbjct: 433 FAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHV-DGNYVLLSNIYSQAKEWDKVV 491
Query: 429 RWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R MM + I K GSS IEV+ + H+F+AG H
Sbjct: 492 NVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSH 527
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 151/332 (45%), Gaps = 20/332 (6%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP-D 203
+ A ++A ++ A +F ++ + WNTM+ YL SQ E + LF +M+ P D
Sbjct: 45 LFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPID 104
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+++ V+ AC L G ++H GL S+ TALI+MYAK G IE + +
Sbjct: 105 SYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILD 164
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ D+ +N ++ G + L ++ D + D +++ ++ + G V
Sbjct: 165 EMAHPDLVPYNVLLAEYVRVG----EINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGT 220
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALL 380
+LF R R L + M+ +AR + A+ L M P + + ++L
Sbjct: 221 AKKLFDRT-----CERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVL 275
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLS-DGEL-MMFANLYASCGQWEEANRWRNMMNDTG 438
SAC L +G + + C + N + D +L ++YA CG + + R N MN+
Sbjct: 276 SACGDVGALGMGKMIHE--CIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRD 333
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGHLSNLLT 470
+ A S++I + + H F + H S +++
Sbjct: 334 VF--AWSAMI-MGLANHGFGELALDHFSKMIS 362
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 179/494 (36%), Positives = 280/494 (56%), Gaps = 37/494 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E V D +S L+ KA L + G+ +HG KT C +++Q L+ +Y C
Sbjct: 76 MIENNVPVDKFSLSLVTKACSRLGFAKEGMQIHGFLTKTVICSDLFLQNCLIGLYIKCSC 135
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL---------------- 104
+ A +VF++MP++D +++NSM+D + CG ++ A +L DLMP
Sbjct: 136 LGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEKKNLISWNSMIGGYA 195
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KD+ S+N +I GY + G+I A+ +FD +P +DVV+W ++I
Sbjct: 196 QREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMID 255
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y G + KA +F M ++V+ +N+M+ GY++++ ++E +++F +M K ++ PD
Sbjct: 256 GYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDET 315
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L IH+Y + + ALIDMY+KCGSI+Q++ VF
Sbjct: 316 TLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGI 375
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNAMI GLA+HG G AA +L E+ +K D ITF+G+L+ACSH+GLV+EG
Sbjct: 376 ENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEGL 435
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVDLL R+ ++ A LI MP EP + I L+AC
Sbjct: 436 LCFELMRRKHKIEPRLQHYGCMVDLLARSGSIELAKHLISEMPIEPNDVIWRTFLNACSH 495
Query: 386 HQDLEIGDR-VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
H++ E + VA+ + ++ Y + ++ +N+YAS WE+ R R MM + I K G
Sbjct: 496 HKEFETRELVVAENLILQAGY-NPSSYVLLSNMYASFEMWEDVRRVRTMMKERKIEKVPG 554
Query: 445 SSVIEVNGSYHKFL 458
S IE++G H+FL
Sbjct: 555 CSWIELDGKVHEFL 568
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 43/231 (18%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ + + + L M NV D +++ V AC+ LG + G +IH + T
Sbjct: 53 WNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIHGFLT 112
Query: 232 DNGLASNPHATTALIDMYA-------------------------------KCGSIEQSLE 260
+ S+ LI +Y KCG IE + E
Sbjct: 113 KTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARE 172
Query: 261 VF--YKSQVKDVFCWNAMILGLALHGYGY-AALKLLGEMNDSCVKADDITFIGLLSACSH 317
+F + K++ WN+MI G A G A KL EM + D I++ L+
Sbjct: 173 LFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEK----DLISWNSLIDGYVK 228
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G +++ LF M + R + + M+D + + +A L + MP
Sbjct: 229 HGRIEDAKGLFDVMPR-----RDVVTWATMIDGYAKLGFVHKAKSLFDVMP 274
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 176/467 (37%), Positives = 279/467 (59%), Gaps = 9/467 (1%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCI--GLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
+E + DN++F + K+ + S C+ GL LH Q ++GFC +YV T ++ MY
Sbjct: 70 KETCLAPDNFTFTTMTKSCTL--SMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFG 127
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-LKDVTSFNIMISGYA 118
+ A VF++MP++ ++W +++ + G++D A KL D MP +KDV +N M+ G+
Sbjct: 128 KMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQMPQVKDVVIYNAMMDGFV 187
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ G + SAR +FD++ K V++W ++I Y N+ +++ A ++F M +N+++WNTM+ G
Sbjct: 188 KSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGG 247
Query: 179 YLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
Y +++ E + LF EM+A ++ PD +T+ SVL A ++ G+L G H + L
Sbjct: 248 YCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDK 307
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
TA++DMY+KCG IE++ +F + K V WNAMI G AL+G +AAL L M
Sbjct: 308 KVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMA 367
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
K D+IT + ++SAC+H GLV+EG + F M K FG+ K+EHYGCMVDLLGRA L
Sbjct: 368 KE-EKPDEITMLAVISACNHGGLVEEGRKWFQMMRK-FGLNAKIEHYGCMVDLLGRAGNL 425
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
+A LI MPF+P IL + LSAC ++D+E +R+ K + +DG ++ NL
Sbjct: 426 KQAEHLITNMPFKPNGIILSSFLSACGQYKDIERAERILKKA-VELEPQNDGNYVLLRNL 484
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ +W++ +NMM K G S+IE+N +F++G H
Sbjct: 485 YAADKRWDDFGMVKNMMRKNEAKKEVGCSLIEINYIVSEFISGDTTH 531
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 131/338 (38%), Gaps = 56/338 (16%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N+M+ YL ++ Y + + +++ + PD T T++ +C + G ++H
Sbjct: 46 NSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNFTFTTMTKSCTLSMCVYQGLQLHSQIW 105
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYK--------------------------- 264
+G ++ + +T ++DMYAK G + + VF +
Sbjct: 106 RSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASK 165
Query: 265 -----SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
QVKDV +NAM+ G G +A +L EM V IT+ ++ ++
Sbjct: 166 LFDQMPQVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV----ITWTTMIHGYCNSN 221
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPTESI 375
+ +LF M + R L + M+ + + AI L + M +P +
Sbjct: 222 DIDSARKLFDAMPE-----RNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVT 276
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
+ ++L A L +G+ V K+ ++Y+ CG+ E+A R + M
Sbjct: 277 ILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMP 336
Query: 436 DTGIVKTAGSSVIEVNGSYHKFLAGGIGH--LSNLLTM 471
+ V N H + G H L LTM
Sbjct: 337 E--------KQVASWNAMIHGYALNGNAHAALDLFLTM 366
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 191/512 (37%), Positives = 283/512 (55%), Gaps = 46/512 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ D+Y+FP LLK+ G +HG +K GF +YV T+L+ MY
Sbjct: 80 MISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGR 139
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF+ +D++++ +++ + S G ++ A KL D +P KDV S+N MISGY
Sbjct: 140 LEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVET 199
Query: 121 GKIHSARYIFDKV-------P--------------------AKDVVSW------------ 141
G A +F ++ P + V SW
Sbjct: 200 GNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKI 259
Query: 142 -NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
N+LI Y+ GE+E A E+F + K+VI+WNT++ GY LY E + LF EM
Sbjct: 260 VNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 319
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHA-TTALIDMYAKCGSIEQ 257
P+ +T+ S+L ACA+LG+++ G IHVY G+ +N + T+LIDMYAKCG I+
Sbjct: 320 TPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDA 379
Query: 258 SLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ +VF S + + WNAMI G A+HG AA + M + ++ DDITF+GLLSACS
Sbjct: 380 AQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACS 439
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
H+G++ G +F M + + +T KLEHYGCM+DLLG + L A E+I MP EP I
Sbjct: 440 HSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIW 499
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
+LL AC IH +LE+G+ AK + K + G ++ +N+YA+ G+W E + R ++ND
Sbjct: 500 CSLLKACKIHGNLELGESFAKKLI-KIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLND 558
Query: 437 TGI-VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
G+ K G S IE++ H+F+ G H N
Sbjct: 559 KGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQN 590
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F + N++ WNTM G+ S + + L+ M + + PD T +L +CA
Sbjct: 45 VFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKI 104
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+ G +IH + G + + T+LI MYA+ G +E + +VF S +DV + A+I G
Sbjct: 105 RKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAG 164
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
GY +A KL E+ D +++ ++S G +E ELF M
Sbjct: 165 YVSRGYIESAQKLFDEIPGK----DVVSWNAMISGYVETGNYKEALELFKEM 212
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 226 IHVYATDNGLASNPHATTALID---MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
IH GL + +A + L++ + ++ VF Q ++ WN M G AL
Sbjct: 7 IHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHAL 66
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+ALKL M + D TF LL +C+ + + +EG ++ + K
Sbjct: 67 SSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLK 117
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 185/499 (37%), Positives = 281/499 (56%), Gaps = 40/499 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G DNY++PLL KA LS +G + G + GF ++V A++ + S +D A
Sbjct: 102 GTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGA 161
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHA------MKLIDLMP--------------L 104
K+F+K +D+++WNSM++ + G A MK+ + P L
Sbjct: 162 RKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQL 221
Query: 105 KD-------------------VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
+D V N ++ Y + G + SAR +FD + K +VSW +++
Sbjct: 222 EDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMV 281
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
+ Y +G ++ A ++F +M K+V+ WN M+ GY+ + E + LF+EM+A N+ PD +
Sbjct: 282 VGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEV 341
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ S LSAC+ LG+L+ G IH Y + L+ N TALIDMYAKCG I ++++VF +
Sbjct: 342 TMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQEL 401
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
++ W A+I GLALHG + A+ EM D+ V D++TF+GLLSAC H GLV+EG
Sbjct: 402 PGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 461
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
+ FS+M F ++ KL+HY CMVDLLGRA LL+ A ELI++MP E + GAL AC I
Sbjct: 462 KYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRI 521
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H ++ +G+R A + + S G ++ AN+Y W+EA + R +M G+ KT G
Sbjct: 522 HGNVLMGERAASKLLQMDPHDS-GIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGC 580
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IEVNG ++F+ H
Sbjct: 581 SSIEVNGIVYEFIVRDKSH 599
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 165/379 (43%), Gaps = 43/379 (11%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+ Q + TG + + L+ R +D + + +WN + F
Sbjct: 25 IQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDS 84
Query: 90 GQMDHAMKLIDLMPLKDVT-----SFNIMISGYARIGKIHSARYIFDKVPA----KDVVS 140
A+ L + D T ++ ++ AR+ I I V D+
Sbjct: 85 ENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFV 144
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
N++I + G+++ A +MF K V+++++WN+M+ GY+R E ++ + EMK +
Sbjct: 145 SNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGI 204
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KPD +T+ V+S+CA L L+ G H Y +NGL AL+DMY KCG++E + +
Sbjct: 205 KPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARK 264
Query: 261 VF----YKSQV---------------------------KDVFCWNAMILGLALHGYGYAA 289
+F K+ V KDV WNAMI G G A
Sbjct: 265 LFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEA 324
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L L EM + D++T + LSACS G + G + +EK ++ + ++D
Sbjct: 325 LALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKH-ELSLNVALGTALID 383
Query: 350 LLGRARLLDRAIELIEAMP 368
+ + + +AI++ + +P
Sbjct: 384 MYAKCGKITKAIQVFQELP 402
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 103/451 (22%), Positives = 183/451 (40%), Gaps = 74/451 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ D + ++ + L +G H + G V + AL+ MY
Sbjct: 199 MKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGN 258
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A K+F+ M K +++W +M+ +A G +D A KL D MP KDV +N MI GY
Sbjct: 259 LESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHA 318
Query: 121 GKIHSARYIFDKVPAK----------------------DVVSW----------------- 141
+ A +F+++ A DV W
Sbjct: 319 NRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALG 378
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+LI Y G++ KA ++F+++ +N +TW +++G + F EM +V
Sbjct: 379 TALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM 438
Query: 202 PDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD +T +LSAC + G +E G + ++ L+ + ++D+ + G +E++ E
Sbjct: 439 PDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEE 498
Query: 261 VFYKSQVK-DVFCWNAMILGLALHGY----GYAALKLLG-EMNDSCVKADDITFIGLLSA 314
+ ++ D W A+ +HG AA KLL + +DS + G
Sbjct: 499 LIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEM 558
Query: 315 CSHAG-----LVQEGCE-------------LFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
AG + Q G E ++ + +D + + Y C++
Sbjct: 559 WKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQ------- 611
Query: 357 LDRAIELIEAMPFEPT---ESILGALLSACV 384
L R +EL+E P P S+ G+ C+
Sbjct: 612 LTRQLELVECTPVFPIFGDNSLFGSDFGRCI 642
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 184/508 (36%), Positives = 283/508 (55%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP LLK+ + G LHGQ +K GF +Y+ T+L+ MY
Sbjct: 94 MVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGR 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KV +K +D++++ +++ +AS G ++ A K+ D +P+KDV S+N ISGYA
Sbjct: 154 LEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAET 213
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F K+ P + V SW
Sbjct: 214 GNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIV 273
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GE+E A +F+ + K+VI+WNT++ GY LY E + LF +M K
Sbjct: 274 NALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEK 333
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+LSACA+LG+++ G IHVY G+ + T+LIDMYAKCG IE +
Sbjct: 334 PNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQ 393
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF + + WNAMI G A+HG AA + M + ++ DDITF+GLLSACSH+G
Sbjct: 394 QVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSG 453
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M +D+ + KLEHYGCM+DL G + L A ++I M EP I +L
Sbjct: 454 MLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSL 513
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC +H ++E+G+ A+ + K + G ++ +N+YA+ +W E + R ++ND G+
Sbjct: 514 LKACKMHGNVELGESYAQNLI-KIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGM 572
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRN 600
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 41/294 (13%)
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K + S I+ + + G +H+ Y K+ V+S + L Y A +F +
Sbjct: 13 KTLQSLRIIHAQMIKTG-LHNTNYALSKLLEXCVLSPHFDGLPY--------AISVFDTI 63
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
++ WNTM G+ S + + L+ M + + P+ T +L +CA + + G
Sbjct: 64 QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQ 123
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ------------------ 266
++H G + + T+LI MY + G +E + +V KS
Sbjct: 124 QLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRG 183
Query: 267 -------------VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
VKDV WNA I G A G AL+L +M + V+ D+ T + +LS
Sbjct: 184 XIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLS 243
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
AC+ +G ++ G ++ S + D G L+ ++DL + L+ A L + +
Sbjct: 244 ACAQSGSIELGRQVHSWI-NDHGFGXNLKIVNALIDLYSKCGELETACGLFQGL 296
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 180/468 (38%), Positives = 267/468 (57%), Gaps = 12/468 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D ++FP L K+ G+L C G LH + K GF Y+Q L+ MY + C+ A
Sbjct: 135 GLDPDRFTFPSLFKSCGVL---CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSA 191
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYARI 120
KVF+KM K +++W +M+ A+A A+KL M + V I +++ AR
Sbjct: 192 RKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARS 251
Query: 121 GKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ +A+ + + + V ++L+ Y G A ++F KM KN+ WN M+
Sbjct: 252 RDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMI 311
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G++ Y E + LF+EM+ VK D +T+ S+L AC +LG+LE G +HVY +
Sbjct: 312 NGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIE 371
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ TAL+DMYAKCGSIE ++ VF + KDV W A+I+GLA+ G G AL+L EM
Sbjct: 372 VDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEM 431
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
S VK D ITF+G+L+ACSHAGLV EG F+ M +G+ +EHYGCMVD+LGRA
Sbjct: 432 QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGR 491
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
+ A +LI+ MP P +L LLSAC IH +L + +R A+ + + + + G ++ +N
Sbjct: 492 IAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQL-IELDPKNGGTYVLLSN 550
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+Y+S WE A + R +M + I K G S IEV G H+F+ G + H
Sbjct: 551 IYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSH 598
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 7/188 (3%)
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
D A +V++ +L ++G + A +F ++ T N+++ GY L + +
Sbjct: 71 DPFSASKIVAFCAL----HDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAIL 126
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
+ M + PD T S+ +C G L G ++H ++T G AS+ + L++MY+
Sbjct: 127 FYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYS 183
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
CG + + +VF K K V W MI A + A+KL M + VK ++IT +
Sbjct: 184 NCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVN 243
Query: 311 LLSACSHA 318
+L+AC+ +
Sbjct: 244 VLTACARS 251
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 35/230 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + LL A L + +G LH K V + TAL+ MY
Sbjct: 330 MQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGS 389
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A +VF++MPEKD++ W +++ A CGQ A++L M + +V
Sbjct: 390 IESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKP----------- 438
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-----NVITWNTM 175
D +++ ++ A ++AG + + F M K ++ + M
Sbjct: 439 ----------------DAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCM 482
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V R+ E DL M + PDY + +LSAC G+L R
Sbjct: 483 VDMLGRAGRIAEAEDLIQNMP---MAPDYFVLVGLLSACRIHGNLVVAER 529
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 187/506 (36%), Positives = 285/506 (56%), Gaps = 50/506 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G D +SF L+LKA + G +HG +K ++++ L+ MY LRC
Sbjct: 116 MLENGFCVDKFSFSLILKACARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMY--LRC 173
Query: 61 IDDAF--KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-------------- 104
D F +VF++MP +D +++NSM+D + G +D A +L D MPL
Sbjct: 174 GDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGG 233
Query: 105 --------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
+D+ S+N +I G+A+ G+I A +F+++P +DV+SW+++
Sbjct: 234 FAQTKDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNM 293
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPD 203
I Y G+++ A +F +M K+V+ +NT++ GY ++ Y E +++F EM + N+ PD
Sbjct: 294 IDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPD 353
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T+ LSA + LG +E A +H Y +NG++ ALIDMY+KCGSIE ++ +F
Sbjct: 354 ETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFD 413
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
K + WNAMI G+A +G G A +L EM+ VK D ITFIG+L+AC+HAGLV+E
Sbjct: 414 GVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKE 473
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G F M K + KL+HYGCMVD+LG+A L++ A++ IE MP EP + I LLSAC
Sbjct: 474 GLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSAC 533
Query: 384 VIHQDLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
H++ IG+ +AK + C S+Y+ + +N+YA G W A++ R MM
Sbjct: 534 QNHENFTIGELIAKHLMTMDSCNSSSYV------LLSNIYARLGLWSAASKVRMMMKKQN 587
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ K G S IE+ G H+FL H
Sbjct: 588 LTKVPGCSWIELEGVVHEFLVRDKSH 613
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 128/312 (41%), Gaps = 40/312 (12%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ Y + + LF M D + + +L ACA + +E G +IH
Sbjct: 93 WNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIHGLLM 152
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ SN LI MY +CG IE + +VF + ++D +N+MI G G +
Sbjct: 153 KLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSG----TID 208
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC----ELFSRMEKDFGVTRKLEHYGCM 347
L E+ DS + +D I S ++G ELF +M + R L + +
Sbjct: 209 LARELFDS-MPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPE-----RDLVSWNTI 262
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYL 406
+ + ++ A L MP S + +I ++GD +VA+ + + +
Sbjct: 263 IGGFAKCGRIEFAHSLFNRMPKRDVISW------SNMIDGYAKLGDIKVARTLF---DEM 313
Query: 407 SDGELMMFANL---YASCGQWEEA-------NRWRNMMNDTGIVKTAGSSV-----IEVN 451
D +++ F + YA G + EA R N+ D + A S++ +E
Sbjct: 314 PDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKA 373
Query: 452 GSYHK-FLAGGI 462
S H FL GI
Sbjct: 374 ASMHNYFLENGI 385
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/503 (34%), Positives = 279/503 (55%), Gaps = 40/503 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ D +SFP LLKA + S GL +HG K GF +VQT L++MY +
Sbjct: 113 MRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGR 172
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG---- 116
I +A +F+KM +D++ W+ M+D + G + A+ L + M +V +M+S
Sbjct: 173 IAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSA 232
Query: 117 -----------------------------------YARIGKIHSARYIFDKVPAKDVVSW 141
YA G + A +F+K+ K++V+
Sbjct: 233 CGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVAS 292
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+++ Y+ G++E A +F +M+ K+++ W+ M++GY S E ++LF+EM++ +K
Sbjct: 293 TAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIK 352
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +T+ SV++ACA+LG+L+ IH++ NG ALI+MYAKCGS+E++ +
Sbjct: 353 PDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRI 412
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K K+V W MI A+HG +AL+ +M D ++ + ITF+G+L ACSHAGLV
Sbjct: 413 FDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLV 472
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+EG ++F M + +T K HYGCMVDL GRA LL A+EL+EAMP P I G+L++
Sbjct: 473 EEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMA 532
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC +H ++E+G+ AK + + + DG + +N+YA +WE+ + R +M GI K
Sbjct: 533 ACRVHGEIELGEFAAKRLL-ELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISK 591
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
G S E+N H+FL H
Sbjct: 592 ERGCSRFELNNEIHEFLVADRSH 614
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N + RS+ + + +++ M+ + D + +L A + + SL G IH A
Sbjct: 91 NRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAK 150
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S+P T L+ MYA CG I ++ +F K +DV W+ MI G G AL L
Sbjct: 151 LGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLL 210
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR-MEKDFGVTRKLEHYGCMVDLL 351
EM + V+ D++ +LSAC AG + G + ME + V L+ +V +
Sbjct: 211 FEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQ--SALVTMY 268
Query: 352 GRARLLDRAIELIEAM 367
+D A+ L E M
Sbjct: 269 ASCGSMDLALNLFEKM 284
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 172/466 (36%), Positives = 274/466 (58%), Gaps = 35/466 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E V +Y+F L+KA + + +G M+H K GF H++VQTAL+ Y L
Sbjct: 129 LEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEI 188
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +A KVF++M E+D AFA + M+S AR+
Sbjct: 189 LSEARKVFDEMCERD---------AFA----------------------WTAMLSALARV 217
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + SAR +F+++P ++ +WN++I YT G +E A +F +M K++I+W TM+T Y
Sbjct: 218 GDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYS 277
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+++ Y + + ++ EM+ + PD +T+++V SACA++G+LE G IH Y GL + +
Sbjct: 278 QNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVY 337
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+AL+DMYAKCGS++ SL +F+K K+++CWNA+I GLA+HGY AL++ M
Sbjct: 338 IGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREK 397
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ + +TFI +LSAC+HAGLV EG F M +D+ + + HYGCMVD+L ++ L+ A
Sbjct: 398 IMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEA 457
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIG-DRVAKMVCAKSNYLSDGELMMFANLYA 419
+ELI++M FEP I GALL+ C +H + EI D V +++ + ++ G + ++YA
Sbjct: 458 LELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEP--MNSGHYNLLVSMYA 515
Query: 420 SCGQWEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLAGGIGH 464
W E R+MM + G+ K GSS IE+ G+ H+F A H
Sbjct: 516 EEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSH 561
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 20/215 (9%)
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGL 311
S+ + F + + +VF +NAMI G GY + AL+ M +S V TF L
Sbjct: 85 NSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSL 144
Query: 312 LSACSHAGLVQEG----CELFSR-MEKDFGVTRKLEHYGCMVDLLGRAR-LLDRAIELIE 365
+ AC+ V+ G C ++ + E V L + +++L AR + D E+ E
Sbjct: 145 VKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFD---EMCE 201
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
F T ++L AL + ++ + + + A N + DG Y G E
Sbjct: 202 RDAFAWT-AMLSALARVGDMDSARKLFEEMPERNTATWNTMIDG--------YTRLGNVE 252
Query: 426 EANRWRNMMNDTGIVK-TAGSSVIEVNGSYHKFLA 459
A N M I+ T + N Y LA
Sbjct: 253 SAELLFNQMPTKDIISWTTMITCYSQNKQYQDALA 287
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 160/386 (41%), Positives = 248/386 (64%), Gaps = 1/386 (0%)
Query: 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM 71
++P ++KA S + GL++H +K+GF Y+ ++L+ +Y + + + A ++F
Sbjct: 2 TYPFVIKACNESSVTWFGLLVHTH-VKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLC 60
Query: 72 PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD 131
++D+++WN+M+D + G+M HA + D M +DV S+N MI+GYA +GKI A+ +FD
Sbjct: 61 SDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFD 120
Query: 132 KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
++P +++VS NS++ + G +E A +F +M ++V++WN+M+ Y + E + L
Sbjct: 121 EMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 180
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
FD+M A VKP TV S+LSACA+LG+L+ G +H Y DN + N TAL+DMYAK
Sbjct: 181 FDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK 240
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
CG I + +VF + KDV WN +I G+A+ G+ A +L EM ++ V+ +DITF+ +
Sbjct: 241 CGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAM 300
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP 371
LSACSHAG+V EG +L M +G+ K+EHYGC++DLL RA LL+ A+ELI MP EP
Sbjct: 301 LSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEP 360
Query: 372 TESILGALLSACVIHQDLEIGDRVAK 397
LGALL C IH + E+G+ V K
Sbjct: 361 NPCALGALLGGCRIHGNFELGEMVGK 386
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 185/499 (37%), Positives = 280/499 (56%), Gaps = 36/499 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +SF L+LKA L G+ +HG + V++Q L+ +Y C
Sbjct: 113 MLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGC 172
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFNIMISGYA 118
+ A ++F++M ++D +++NSM+D + G + A +L D+MP+ K++ S+N MISGYA
Sbjct: 173 LGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYA 232
Query: 119 R--------------------------------IGKIHSARYIFDKVPAKDVVSWNSLIL 146
R GK+ +A ++F+++P +DVVSW +++
Sbjct: 233 RSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVD 292
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y GE++ A +F +M ++VI+ N M+ GY+++ +E ++ F +M + PD
Sbjct: 293 GYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNA 352
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ LSA A LG + G +H Y DNG + + ALIDMYAKCGSI+ +L VF
Sbjct: 353 TLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDI 412
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
K + WNA+I GLA+HG G A +L EM VK DDITFIG+L+AC+HAGLV+EG
Sbjct: 413 DDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGL 472
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + V KL+HYGCMVD+LGRA ++ A + +E MP EP + + LLSAC
Sbjct: 473 MCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRN 532
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ IG+ VAK + + +Y + ++ +N+YA G W + R R MM + K G
Sbjct: 533 HENFTIGEPVAKHLISVDSY-NPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGC 591
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IE+ G+ H+F H
Sbjct: 592 SQIELEGNVHEFFVRDKSH 610
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 35/231 (15%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N WN ++ + + E +F+ M V D + + VL AC+ LG ++ G +IH
Sbjct: 86 NPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIH 145
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY-- 285
+ S+ L+ +Y +CG + + ++F + +D +N+MI G HG
Sbjct: 146 GLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVK 205
Query: 286 ------------------------GYA----ALKLLGEMNDSCVKADDITFIGLLSACSH 317
GYA L++ E+ + K D I++ ++ C
Sbjct: 206 SARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVK 265
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G ++ LF++M K R + + MVD + +D A L + MP
Sbjct: 266 CGKMENAHHLFNQMPK-----RDVVSWANMVDGYAKLGEIDIARGLFDEMP 311
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 174/472 (36%), Positives = 272/472 (57%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G +N++ P +LKA +GL +H +K G+ V+V+T+LL +Y
Sbjct: 105 MRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDN 164
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
DDA KVF+ +P+K++++W +++ + S G A+ KL+++ D S +++
Sbjct: 165 FDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA 224
Query: 117 YARIGKIHSA----RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
AR+G S RYI D ++V SL+ Y G +E+A +F M K++++W
Sbjct: 225 CARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSW 284
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+TM+ GY + L + +DLF +M++ N+KPD T+ VLSACA LG+L+ G
Sbjct: 285 STMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDR 344
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N SNP TALIDMY+KCGS+ Q+ E+F + KD WNAM++GL+++G+ A L
Sbjct: 345 NEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSL 404
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+ ++ D+ TFIGLL C+H G V EG + F+ M++ F +T +EHYGCMVDLLG
Sbjct: 405 FSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLG 464
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LL+ A +LI MP +P + GALL C +H+D + ++V K + + S G +
Sbjct: 465 RAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNS-GNYV 523
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+Y+ +WEEA + R+ M + I K S IE++G H+FL G H
Sbjct: 524 QLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSH 575
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 118/259 (45%), Gaps = 10/259 (3%)
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
FN + +AR+ ++H +D N ++ + G + +F ++ N+
Sbjct: 29 FNQLKHIHARLLRLHLD---------QDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNI 79
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
WNTM+ G + + + + L+ M+ G P+ T+ VL ACA + G +IH
Sbjct: 80 FLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSL 139
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
G + T+L+ +Y KC + + +L+VF K+V W A+I G G+ A
Sbjct: 140 LVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREA 199
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+ ++ + +K D + + +L+AC+ G G E R D G+ R + ++D
Sbjct: 200 IGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLD 258
Query: 350 LLGRARLLDRAIELIEAMP 368
+ + L+RA + AMP
Sbjct: 259 MYVKCGNLERANLIFSAMP 277
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 174/472 (36%), Positives = 272/472 (57%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G +N++ P +LKA +GL +H +K G+ V+V+T+LL +Y
Sbjct: 105 MRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDN 164
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
DDA KVF+ +P+K++++W +++ + S G A+ KL+++ D S +++
Sbjct: 165 FDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA 224
Query: 117 YARIGKIHSA----RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
AR+G S RYI D ++V SL+ Y G +E+A +F M K++++W
Sbjct: 225 CARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSW 284
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+TM+ GY + L + +DLF +M++ N+KPD T+ VLSACA LG+L+ G
Sbjct: 285 STMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDR 344
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N SNP TALIDMY+KCGS+ Q+ E+F + KD WNAM++GL+++G+ A L
Sbjct: 345 NEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSL 404
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+ ++ D+ TFIGLL C+H G V EG + F+ M++ F +T +EHYGCMVDLLG
Sbjct: 405 FSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLG 464
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LL+ A +LI MP +P + GALL C +H+D + ++V K + + S G +
Sbjct: 465 RAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNS-GNYV 523
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+Y+ +WEEA + R+ M + I K S IE++G H+FL G H
Sbjct: 524 QLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSH 575
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 118/259 (45%), Gaps = 10/259 (3%)
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
FN + +AR+ ++H +D N ++ + G + +F ++ N+
Sbjct: 29 FNQLKHIHARLLRLHLD---------QDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNI 79
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
WNTM+ G + + + + L+ M+ G P+ T+ VL ACA + G +IH
Sbjct: 80 FLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSL 139
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
G + T+L+ +Y KC + + +L+VF K+V W A+I G G+ A
Sbjct: 140 LVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREA 199
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+ ++ + +K D + + +L+AC+ G G E R D G+ R + ++D
Sbjct: 200 IGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLD 258
Query: 350 LLGRARLLDRAIELIEAMP 368
+ + L+RA + AMP
Sbjct: 259 MYVKCGNLERANLIFSAMP 277
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 284/480 (59%), Gaps = 39/480 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSS-SCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR---- 59
G D ++FP LLK+A L+S G +H Q ++ G V+V LL MY + R
Sbjct: 73 GDTPDRFTFPSLLKSASRLASFPRTGAQVHAQAVRRGLLVDVFVVNTLLAMYAAFRDTRS 132
Query: 60 --------------------------C--IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
C I +A +VFE+MP+++ ++W++M+ A+A G+
Sbjct: 133 MREVFDSCAGVADLVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGE 192
Query: 92 MDHAMKLIDLMPL--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
+D A ++ D MP ++V S+N MI+G+AR G + AR +FD++P +++VSWN+++ Y
Sbjct: 193 LDVAREMFDEMPAIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYA 252
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVT 208
GEM A E+F +M K+V++W M++GY +++ Y E ++LF M++ NV P+ +T+
Sbjct: 253 VNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMV 312
Query: 209 SVLSACANLGSLETGARIHVYATDNG--LASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
SVLSACA+L +LE G H + + L S + ALIDMY+KCG + ++++F+
Sbjct: 313 SVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLD 372
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K+V WNA+I GLA++G +++ + +M S K + ITF+G+L+AC+H GLV EG
Sbjct: 373 QKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRR 432
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F M GV + +HYGCMVD+LGRA LL+ A ELI +MP P ILGALL AC +H
Sbjct: 433 CFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMH 492
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
+ +++ RV + S S G ++ +++YA+ G+W +A R ++ GI K GSS
Sbjct: 493 KRVDVAARVQNEILGLSTQQS-GCHVLISDIYAAAGKWADALYARGVLQKFGISKLRGSS 551
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 177/491 (36%), Positives = 279/491 (56%), Gaps = 40/491 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ G+ AD++++P +L+A G+L S G H IKTGF Y ++L++MY L
Sbjct: 40 LRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIKTGFRWDAYTGSSLMEMYTMLGR 99
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----------- 109
+D A KVF++MP + ++ WN M+ + CG+ A+ L + M VT
Sbjct: 100 VDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTA 159
Query: 110 ----------------------FNIMISG-----YARIGKIHSARYIFDKVPAKDVVSWN 142
FN+ ++ Y + + A +F+++PA++++SW
Sbjct: 160 CSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWT 219
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
L+ Y AG+++KA +F + K++I W M+ ++ + E + LF +M+ V+P
Sbjct: 220 ILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEP 279
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D TV ++L+ CANLG+L+ G IH YA + + TALIDMY+KCG IE+SLEVF
Sbjct: 280 DRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVF 339
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
++ Q +D W A+I GLA +G AL+L +M S VK D +TFIG+LSAC H GLV
Sbjct: 340 WRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVD 399
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF-EPTESILGALLS 381
EG + F M + + + ++EHY C+V+LLGRA LLD A LI +P + + GALL+
Sbjct: 400 EGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINKDAMPLFGALLT 459
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC H ++E+ +R+ K +C + + ++D L+M +N+YA+ +WE+ R R M + K
Sbjct: 460 ACKAHGNVEMSERLTKRICEQDSQITDVNLLM-SNVYATASRWEDVIRVRGKMAHPTVKK 518
Query: 442 TAGSSVIEVNG 452
TAG S+IEV G
Sbjct: 519 TAGCSLIEVKG 529
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 2/196 (1%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ R + V+ ++ +++A + D T VL A L G + H A
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIK 77
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + + ++L++MY G ++ + +VF + + + WN M+ G AA+ L
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVAL 137
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M S V D +T + ++ACS A + G + M+ FG L ++D+
Sbjct: 138 SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFN--LPVANALLDMYT 195
Query: 353 RARLLDRAIELIEAMP 368
+ L+ A++L E MP
Sbjct: 196 KNDCLEEAVKLFEQMP 211
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 180/472 (38%), Positives = 274/472 (58%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G +N++FP +LKA L +G+ +H +K GF V+V+T+L+ +Y
Sbjct: 103 MRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGY 162
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
++DA KVF+ +P+K++++W +++ + G+ A+ +L+++ D + ++S
Sbjct: 163 LEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSA 222
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++G ++S +I + ++V SL+ Y G MEKA +F M K++++W
Sbjct: 223 CTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSW 282
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+ GY + L E +DLF +M+ NVKPD TV VLSACA LG+LE G +
Sbjct: 283 GAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDR 342
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N NP TALID+YAKCGS+ ++ EVF + KD WNA+I GLA++GY + L
Sbjct: 343 NEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGL 402
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
G++ +K D TFIGLL C+HAGLV EG F+ M + F +T +EHYGCMVDLLG
Sbjct: 403 FGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLG 462
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LLD A +LI MP E + GALL AC IH+D ++ + K + + S G +
Sbjct: 463 RAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNS-GNYV 521
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N+Y++ +W+EA + R MN+ I K G S IEV+G H+FL G H
Sbjct: 522 LLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYH 573
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 39/345 (11%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F ++ N+ WNTM+ G + + + + ++ + M++ P+ T VL ACA L
Sbjct: 68 LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
L+ G +IH G + T+L+ +YAKCG +E + +VF K+V W A+I G
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISG 187
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
G A+ + + + + D T + +LSAC+ G + G E + + G+ R
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSG-EWIHKCIMEMGMVR 246
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFE-----------------PTESI------- 375
+ +VD+ + +++A + + MP + P E+I
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQ 306
Query: 376 ----------LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQW 424
+ +LSAC LE+G+ V+ +V ++ +L + L +LYA CG
Sbjct: 307 RENVKPDCYTVVGVLSACARLGALELGEWVSGLV-DRNEFLYNPVLGTALIDLYAKCGSM 365
Query: 425 EEA-NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNL 468
A ++ M +V A S + +NG Y K G G + L
Sbjct: 366 SRAWEVFKGMKEKDRVVWNAIISGLAMNG-YVKISFGLFGQVEKL 409
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 172/463 (37%), Positives = 262/463 (56%), Gaps = 5/463 (1%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGL--MLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
GV ADN+++P LLK SSS + L M+H K GF ++V +L+ Y ++
Sbjct: 118 GVLADNFTYPFLLKGCNG-SSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVE 176
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
A KVF M E+D+++WNSM+ G +D A+K+ D MP +D S+N M+ G+ + G+
Sbjct: 177 MAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGE 236
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ A +F+++ +D+VSW++++ Y+ G+M+ A +F + VKN++ W T+++GY
Sbjct: 237 MDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEK 296
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E ++L DEM+ ++ D S+L+ACA G L G ++H + +
Sbjct: 297 GQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVL 356
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
+ IDMYAKCG ++ + VF + KD+ WN+MI G +HG+G +++L M
Sbjct: 357 NSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGF 416
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
K D TFIGLL AC+HAGLV EG F M++ +G+ ++EHYGCMVDLLGR L A
Sbjct: 417 KPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAF 476
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
L+ +MPFEP ILG LL AC +H D+++ V+K + K G + +N+YA
Sbjct: 477 WLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYL-FKLVPSDPGNFSLLSNIYAQS 535
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G W + R MND G K +G S IEV H+F H
Sbjct: 536 GDWINVAKVRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRDWSH 578
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 34/224 (15%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+I+ Y+ + SA +F++VP +V +N LI AY+ +G + F +L
Sbjct: 60 LIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLL------- 112
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS-LETGARIHVYAT 231
+M V D T +L C S L +H +
Sbjct: 113 ---------------------KMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVE 151
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G + +LID Y +CG +E +++VF + +DV WN+M+ GL +G ALK
Sbjct: 152 KLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALK 211
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKD 334
+ EM + D +++ +L + AG + + +LF RM E+D
Sbjct: 212 VFDEMPER----DRVSWNTMLDGFTKAGEMDKAFKLFERMAERD 251
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 47/264 (17%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G+ D+ F +L A +G +H +++ F V + + MY C
Sbjct: 309 MEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGC 368
Query: 61 IDDAFKVFEKMP-EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+DDAF+VF M EKD+++WNSM+ F G H K I+L FN M+ R
Sbjct: 369 VDDAFRVFNGMKTEKDLVSWNSMIHGFGIHG---HGEKSIEL--------FNTMV----R 413
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNT 174
G RY F L+ A T+AG + + F M +V + +
Sbjct: 414 EG-FKPDRYTFI-----------GLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGC 461
Query: 175 MVT-----GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
MV G+L+ ++ +++ +P+ + + ++L AC ++ + Y
Sbjct: 462 MVDLLGRGGHLKEAFWL--------VRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKY 513
Query: 230 ATDNGLASNPHATTALIDMYAKCG 253
+ S+P + L ++YA+ G
Sbjct: 514 LF-KLVPSDPGNFSLLSNIYAQSG 536
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 190/508 (37%), Positives = 285/508 (56%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP +LK+ + G +HG +K G +YV T+L+ MY
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF+K P +D++++ +++ +AS G +++A KL D +P+KDV S+N MISGYA
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244
Query: 121 GKIHSARYIF----------DKVPAKDVVS----------------W------------- 141
G A +F D+ VVS W
Sbjct: 245 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV 304
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GE+E A +F+++ K+VI+WNT++ GY LY E + LF EM
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA+LG+++ G IHVY G+ + T+LIDMYAKCG IE +
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF K + WNAMI G A+HG A+ L M ++ DDITF+GLLSACSH+G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M +D+ +T KLEHYGCM+DLLG + L A E+I M EP I +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC +H ++E+G+ A+ + K + G ++ +N+YAS G+W E + R ++ND G+
Sbjct: 545 LKACKMHGNVELGESFAENLI-KIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 603
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRN 631
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 188/380 (49%), Gaps = 43/380 (11%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLK---MYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
++H Q IK G Y + L++ + + A VF+ + E +++ WN+M A
Sbjct: 51 IIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHA 110
Query: 88 SCGQMDHAMKL------IDLMP----------------------------LK-----DVT 108
A+KL + L+P LK D+
Sbjct: 111 LSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLY 170
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+IS Y + G++ A +FDK P +DVVS+ +LI Y + G +E A ++F ++ VK+
Sbjct: 171 VHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V++WN M++GY + Y E ++LF +M NV+PD T+ +V+SACA GS+E G ++H+
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL 290
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ D+G SN ALID+Y+KCG +E + +F + KDV WN +I G
Sbjct: 291 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKE 350
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF-GVTRKLEHYGCM 347
AL L EM S +D+T + +L AC+H G + G + ++K GVT +
Sbjct: 351 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSL 410
Query: 348 VDLLGRARLLDRAIELIEAM 367
+D+ + ++ A ++ ++
Sbjct: 411 IDMYAKCGDIEAAHQVFNSI 430
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/466 (36%), Positives = 273/466 (58%), Gaps = 35/466 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E V +Y+F L+KA + + +G M+H K GF H++VQTAL+ Y L
Sbjct: 226 LEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEI 285
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +A KVF++M E+D AFA + M+S AR+
Sbjct: 286 LSEARKVFDEMCERD---------AFA----------------------WTAMVSALARV 314
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + SAR +F+++P ++ +WN++I Y G +E A +F +M K++I+W TM+T Y
Sbjct: 315 GDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYS 374
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+++ Y + + ++ EM+ + PD +T+++V SACA++G+LE G IH Y GL + +
Sbjct: 375 QNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVY 434
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+AL+DMYAKCGS++ SL +F+K K+++CWNA+I GLA+HGY AL++ M
Sbjct: 435 IGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREK 494
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ + +TFI +LSAC+HAGLV EG F M +D+ + + HYGCMVD+L ++ L+ A
Sbjct: 495 IMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEA 554
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIG-DRVAKMVCAKSNYLSDGELMMFANLYA 419
+ELI++M FEP I GALL+ C +H + EI D V +++ + ++ G + ++YA
Sbjct: 555 LELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEP--MNSGHYNLLVSMYA 612
Query: 420 SCGQWEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLAGGIGH 464
W E R+MM + G+ K GSS IE+ G+ H+F A H
Sbjct: 613 EEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSH 658
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 20/215 (9%)
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGL 311
S+ + F + + +VF +NAMI G GY + AL+ M +S V TF L
Sbjct: 182 NSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSL 241
Query: 312 LSACSHAGLVQEG----CELFSR-MEKDFGVTRKLEHYGCMVDLLGRAR-LLDRAIELIE 365
+ AC+ V+ G C ++ + E V L + +++L AR + D E+ E
Sbjct: 242 VKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFD---EMCE 298
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
F T +++ AL + ++ + + + A N + DG YA G E
Sbjct: 299 RDAFAWT-AMVSALARVGDMDSARKLFEEMPERNTATWNTMIDG--------YARLGNVE 349
Query: 426 EANRWRNMMNDTGIVK-TAGSSVIEVNGSYHKFLA 459
A N M I+ T + N Y LA
Sbjct: 350 SAELLFNQMPTKDIISWTTMITCYSQNKQYQDALA 384
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/472 (37%), Positives = 276/472 (58%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G+ D+++FP +LKA + S +G+ +H +K G +V+ +L+ +Y
Sbjct: 99 MRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGF 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
ID+AFKVF+ +P+K+ +W + + + G+ A+ +L+++ D S ++S
Sbjct: 159 IDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSA 218
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
R G + S +I + + ++V +L+ Y G ME+A +F ML KN+++W
Sbjct: 219 CKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSW 278
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++M+ GY + L E +DLF +M +KPD + VL +CA LG+LE G
Sbjct: 279 SSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLING 338
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N N TALIDMYAKCG ++++ EVF + KD WNA I GLA+ G+ AL L
Sbjct: 339 NEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGL 398
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
G+M S +K D TF+GLL AC+HAGLV+EG F+ ME F +T ++EHYGCMVDLLG
Sbjct: 399 FGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLG 458
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LD A +LI++MP E + GALL C +H+D ++ + V K + A + S G +
Sbjct: 459 RAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHS-GNYV 517
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N+YA+ +WEEA + R++M++ G+ K G S IEV+G H+FL G H
Sbjct: 518 LLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSH 569
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 161/329 (48%), Gaps = 23/329 (6%)
Query: 15 LLLKAAGILSS-----SCIGLM--LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
++ K+AGI + SC+ + +H ++ G Y+ +L+ + + +F++
Sbjct: 5 IVTKSAGIKNRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRI 64
Query: 68 FEKMPEKDIIAWNSML------DAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI- 120
++ E +I +N+M+ D F ++ H+M+ L P D +F ++ AR+
Sbjct: 65 LDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSP--DSFTFPFVLKACARVL 122
Query: 121 -----GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
K+HS + D SLI YT G ++ A ++F + KN +W
Sbjct: 123 DSELGVKMHS--LVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTAT 180
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
++GY+ E +D+F + ++PD ++ VLSAC G L +G I Y T+NG+
Sbjct: 181 ISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGM 240
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
N TAL+D Y KCG++E++ VF K++ W++MI G A +G AL L +
Sbjct: 241 VRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFK 300
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEG 324
M + +K D +G+L +C+ G ++ G
Sbjct: 301 MLNEGLKPDCYAMVGVLCSCARLGALELG 329
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 159/384 (41%), Gaps = 49/384 (12%)
Query: 111 NIMISGYA---RIGKIHSA--RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
N +I G++ + IH+A R D+ D N ++ N G + + +
Sbjct: 14 NRLIQGFSCLKHLKHIHAALLRLGLDE----DTYLLNKVLRFSFNFGNTNYSFRILDQTK 69
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
N+ +NTM+ G + + + E ++++ M+ + PD T VL ACA + E G +
Sbjct: 70 EPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK 129
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H G ++ +LI++Y KCG I+ + +VF K+ W A I G G
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
A+ + + + ++ D + + +LSAC G ++ G E + G+ R +
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG-EWIDEYITENGMVRNVFVAT 248
Query: 346 CMVDLLGRARLLDRAIELIEAM--------------------PFE--------------P 371
+VD G+ ++RA + + M P E P
Sbjct: 249 ALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKP 308
Query: 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCGQWEEA-N 428
+ +L +C LE+GD + ++ N D ++ A ++YA CG+ + A
Sbjct: 309 DCYAMVGVLCSCARLGALELGDWASNLI--NGNEFLDNSVLGTALIDMYAKCGRMDRAWE 366
Query: 429 RWRNMMNDTGIVKTAGSSVIEVNG 452
+R M +V A S + ++G
Sbjct: 367 VFRGMRKKDRVVWNAAISGLAMSG 390
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 185/508 (36%), Positives = 279/508 (54%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP LLK+ L S G +HG +K G+ +YV T+L+ MY
Sbjct: 94 MISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGR 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
DA KVF+ +D++++ +++ +AS G ++ A K+ D +P+KDV S+N +ISGYA
Sbjct: 154 WKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADT 213
Query: 121 GKIHSARYIFDKV------P--------------------AKDVVSW------------- 141
G A +F ++ P + V SW
Sbjct: 214 GNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIV 273
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GE+E A +F+ + K+VI+WNTM+ GY LY E + LF EM
Sbjct: 274 NALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGEN 333
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA LG+++ G IHVY G+ + T+LIDMYAKCG IE +
Sbjct: 334 PNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAH 393
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF + + NAMI G A+HG AA + M + ++ DDITF+GLLSACSH+G
Sbjct: 394 QVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSG 453
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M +++ +T KLEHYGCM+DLLG L A E+I M EP I +L
Sbjct: 454 MLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSL 513
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC +H ++E+G+ A+ + K + G ++ +N+YA+ G+W E R ++ND G+
Sbjct: 514 LKACKMHGNVELGESFAQKLI-KIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGM 572
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRN 600
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 132/294 (44%), Gaps = 41/294 (13%)
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K + S I+ + + G +H+ Y ++ ++S N L Y A +F+ +
Sbjct: 13 KTLQSLRIIHAQMIKTG-LHNTNYALSRLLEFCILSPNFDGLPY--------AISVFETI 63
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
N++ WNTM G+ S + + L+ M + + P+ T +L +CA L + G
Sbjct: 64 QEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQ 123
Query: 225 RIHVYA-------------------TDNGLASNPH------------ATTALIDMYAKCG 253
+IH + NG + H + TALI YA G
Sbjct: 124 QIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRG 183
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
IE + ++F + VKDV WNA+I G A G AL L EM + VK D+ T + ++S
Sbjct: 184 YIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVS 243
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
AC+ +G +Q G ++ S ++ D G+ L+ ++DL + ++ A L + +
Sbjct: 244 ACAQSGSIQLGRQVHSWID-DHGLGSNLKIVNALIDLYSKCGEVETACGLFQGL 296
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 177/504 (35%), Positives = 277/504 (54%), Gaps = 45/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E GV DNY++P +LK G + G +H +KTG YV + + MY L
Sbjct: 99 LREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGL 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--------------- 105
++ +VFE+MP++D ++WN M+ + C + + A+ + M +
Sbjct: 159 VEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLS 218
Query: 106 ----------------------DVTSF--NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
D+T+ N ++ Y + G + AR IFD + K+V W
Sbjct: 219 ACAVLRNLELGKEIHDYIASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCW 278
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ Y G++++A +F++ ++++ W M+ GY++ + E + LF EM+ VK
Sbjct: 279 TSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVK 338
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD V ++L+ CA G+LE G IH Y +N + + TALI+MYAKCG IE+S E+
Sbjct: 339 PDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEI 398
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + KD W ++I GLA++G AL+L M +K DDITF+ +LSACSHAGLV
Sbjct: 399 FNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLV 458
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL---GA 378
+EG +LF M + + LEHYGC +DLLGRA LL A EL++ +P + E I+ GA
Sbjct: 459 EEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGA 518
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDT 437
LLSAC + ++++G+R+A + + SD L + A++YAS +WE+ + RN M D
Sbjct: 519 LLSACRTYGNIDMGERLATALAKVKS--SDSSLHTLLASIYASADRWEDVRKVRNKMKDL 576
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGG 461
GI K G S IEV+G + + L+ G
Sbjct: 577 GIKKVPGYSAIEVDGKWQQRLSEG 600
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 104/220 (47%), Gaps = 3/220 (1%)
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
++ G+ A +F + ++ +N M+ +++S + + LF +++ V PD T
Sbjct: 53 SSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYP 112
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
VL +G + G ++H + GL +P+ + +DMYA+ G +E +VF + +
Sbjct: 113 YVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDR 172
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
D WN MI G A+ + M +S K ++ T + LSAC+ ++ G E+
Sbjct: 173 DAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEI 232
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ + +T + + ++D+ + + A E+ +AM
Sbjct: 233 HDYIASELDLTTIMGN--ALLDMYCKCGHVSVAREIFDAM 270
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 177/460 (38%), Positives = 266/460 (57%), Gaps = 43/460 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D ++F +LKA LS +G +HG+ +K+GF + +V+ L+ +
Sbjct: 104 MENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFH----- 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A+CG + A L D ++V ++ + +GYAR
Sbjct: 159 --------------------------ANCGDLATARALFDASAKREVVPWSALTAGYARR 192
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GK+ AR +FD++P KD+VSWN +I AY GEMEKA ++F ++ K+V+TWN M+ GY+
Sbjct: 193 GKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYV 252
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD------NG 234
S+L E +++FD M+ +PD +T+ S+LSA A+LG LE G +IH D +
Sbjct: 253 LSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSV 312
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L SN ALIDMYAKCGSI +LEVF + KD WN++I GLALHG+ ++ L
Sbjct: 313 LLSN-----ALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQ 367
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
EM +K ++ITF+ +L ACSHAG V+EG F+ M+ F + ++HYGCMVD+LGRA
Sbjct: 368 EMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRA 427
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
LL A + I+ M EP I LL AC +H D+E+G R + + K G+ ++
Sbjct: 428 GLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLL-KMRKDESGDYVLL 486
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSY 454
+N+YAS G+W+ + R +M+D G+ K G S+I+ + S+
Sbjct: 487 SNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLIDSDNSF 526
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 19/286 (6%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+ A +G M+ A ++F ++ ++ WNTM+ G ++ V L+ +M+ V+PD
Sbjct: 53 FVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPD 112
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T + VL AC L ++ G IH +G SN LI +A CG + + +F
Sbjct: 113 KFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFD 172
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
S ++V W+A+ G A G A +L EM D +++ +++A + G +++
Sbjct: 173 ASAKREVVPWSALTAGYARRGKLDVARQLFDEMP----MKDLVSWNVMITAYAKHGEMEK 228
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALL 380
+LF + K VT + M+ +RL A+E+ +AM P + + ++L
Sbjct: 229 ARKLFDEVPKKDVVT-----WNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSIL 283
Query: 381 SACVIHQDLEIGDRVAK----MVCAKSNYLSDGELMMFANLYASCG 422
SA DLEIG ++ + M C + L L+ ++YA CG
Sbjct: 284 SASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALI---DMYAKCG 326
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 176/466 (37%), Positives = 260/466 (55%), Gaps = 41/466 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ DNY+ P +LKA + G +HGQ IK G VYV L++MY I A
Sbjct: 135 GIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSA 194
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK------DVTSFNIMISGYA 118
KVF+ P++D+++W +M+ + +M A + + L ++ DV N ++ Y
Sbjct: 195 RKVFDTSPQRDLVSWTTMIQGYV---KMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYL 251
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ G + AR +F ++P K+VVSWNS+I G+ +++ MF+K
Sbjct: 252 KCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRK--------------- 296
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
M+ VKPD +T+ +VL++CANLG LE G +H Y N + ++
Sbjct: 297 ----------------MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRAD 340
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
AL+DMYAKCGSI+Q+ VF KDV+ + AMI+GLA+HG G AL L EM
Sbjct: 341 GFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPK 400
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
++ D++TF+G+L+ACSH GLV+EG + F M + + +LEHYGCMVDLLGRA L++
Sbjct: 401 MGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLIN 460
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A E I MP EP +LGALL AC IH +E+G+ V K + K DG ++ +N+Y
Sbjct: 461 EAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKI-EKIEPRKDGAYVLMSNIY 519
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+S +W +A + R M + + KT G S IE++G H+F G H
Sbjct: 520 SSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSH 565
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 35/231 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ LGV D+ + +L + L +G +H + ++ AL+ MY
Sbjct: 297 MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGS 356
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A VF+ M KD+ ++ +M+ A GQ A+ L MP +
Sbjct: 357 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEP----------- 405
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
D V++ ++ A ++ G +E+ + F+ M L + + M
Sbjct: 406 ----------------DEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCM 449
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
V R+ L E + M ++PD + ++L AC G +E G +
Sbjct: 450 VDLLGRAGLINEAEEFIRNMP---IEPDAFVLGALLGACKIHGKVELGESV 497
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 181/471 (38%), Positives = 267/471 (56%), Gaps = 17/471 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D Y+FP L K+ +S G +H + K GF Y Q L+ MY + C+ A
Sbjct: 83 GLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSA 139
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PLKDVTSFNIMIS--- 115
KVF+KM +K +++W +M+ A Q + A++L D M +VT N++ +
Sbjct: 140 RKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACAR 199
Query: 116 --GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
A + +IH YI + + VV L+ Y G ++ A ++F K KN+ +WN
Sbjct: 200 ARDLAMVKRIHE--YIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWN 257
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
M+ G++ Y E + LF EM+ +K D +T+ S+L AC +LG+LE G +H Y
Sbjct: 258 IMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQ 317
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
+ + TAL+DMYAKCGSIE +++VF++ KDV W A+ILGLA+ G AL+
Sbjct: 318 RIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYF 377
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
EM+ VK D ITF+G+L+ACSHAG V EG F+ M +G+ +EHYG +VD+LGR
Sbjct: 378 DEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGR 437
Query: 354 ARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
A + A ELI++MP P + +LG LL AC IH +LE +R AK + Y S G ++
Sbjct: 438 AGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHS-GTYVL 496
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+Y S +WEEA R R +M + G+ K G S IEV+G H+F+ G H
Sbjct: 497 LSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSH 547
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
FD A +V++ SL +G ++ A +F ++ T N+++ G L+ E
Sbjct: 17 FFDPFTASKIVAFCSL----QESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEA 72
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ + EM + PD T S+ +C N G +IH ++T G AS+ +A L++M
Sbjct: 73 LLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTYAQNTLMNM 129
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS-CVKADDIT 307
Y+ CG + + +VF K + K V W MI A A++L M S VK +++T
Sbjct: 130 YSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVT 189
Query: 308 FIGLLSACSHA 318
+ +L+AC+ A
Sbjct: 190 LVNVLTACARA 200
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 172/491 (35%), Positives = 281/491 (57%), Gaps = 40/491 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E G+ AD++++P +L+A G L S G H T+KTGF Y ++L+ MY L
Sbjct: 37 LRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLKTGFRWDAYTASSLMDMYTMLGR 96
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----------------- 103
++ A KVF++MP++ ++ WN ML + CG+ A+ L + M
Sbjct: 97 LEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALTA 156
Query: 104 ----------------LKDVTSF-----NIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
+ VT F N ++ Y + G + A +F+K+P+++VVSW
Sbjct: 157 CSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWT 216
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+L+ Y AG+++KA +F + K++I W M+ Y++ +IE + LF +M+ ++P
Sbjct: 217 TLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEP 276
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D TV ++L+ CANLG+L+ G IH +A + + TALIDMYAKCG +E+S+EVF
Sbjct: 277 DRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVF 336
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ + +D W A+I GLA +G AL+L +M S K D +TFIG+LSAC H GLV
Sbjct: 337 ERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVD 396
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF-EPTESILGALLS 381
EG + F M++ + + ++EHY C+V+LLGRA LD A +LI+++P + + GAL++
Sbjct: 397 EGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALIT 456
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC ++++ +R+ K + + + D L+M +N+YA+ +WE+ R R+ M + K
Sbjct: 457 ACKAQGNVKMSERLTKRIGKQGYQIPDVNLLM-SNVYATASRWEDVVRVRSKMAHPSVKK 515
Query: 442 TAGSSVIEVNG 452
AG S+IEV G
Sbjct: 516 NAGCSLIEVKG 526
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 2/196 (1%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ R + +V+ ++ +++ + D T VL A L G + H
Sbjct: 15 NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLK 74
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + + ++L+DMY G +E + +VF + + V WN M+ G A+ L
Sbjct: 75 TGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVAL 134
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM + D +T + L+ACS AG + G ++ + M+ G + L ++D+
Sbjct: 135 AEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFS--LPVANALLDMYV 192
Query: 353 RARLLDRAIELIEAMP 368
+ L+ A+ L E MP
Sbjct: 193 KNGCLEEAVNLFEKMP 208
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 177/476 (37%), Positives = 275/476 (57%), Gaps = 15/476 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLR 59
M +G+ D ++ PL+LKA ++ G +H ++IKTG G +VYV L+++Y
Sbjct: 101 MLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCG 160
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA----MKLIDLMPLKDVTSFNIMIS 115
I D KVF++ P +D+++W +++ AF G A M++ DL D + +++S
Sbjct: 161 SIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLS 220
Query: 116 GYARIG------KIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ +G K+HS YI + K DV N+L+ Y ++ A ++F +M VKN
Sbjct: 221 ACSNLGDLNLGQKVHS--YIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKN 278
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+TWN M++G Y E +D F M+ VKPD +T+ VL++CANLG LE G +H
Sbjct: 279 VVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHA 338
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y N + ++ AL+DMYAKCGSI+++ VF + +DV+ + AMI GLALHG
Sbjct: 339 YMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANW 398
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A ++ EM ++ +++TF+GLL ACSH GLV EG + F +M + + + EHYGCM+
Sbjct: 399 AFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMI 458
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DLLGRA L+ A E+I M P GALL AC IH +++IG+ V + + + + +
Sbjct: 459 DLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKL-TELDPDEE 517
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ NLY+S +W++A + R M + + KT G S+IEV+G H+F G H
Sbjct: 518 GTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 573
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 129/295 (43%), Gaps = 41/295 (13%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ R+ + + ++ +EM ++PD T+ VL A A + + G +IH +
Sbjct: 79 NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138
Query: 233 NGLAS-NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G+ N + + L+ +Y+ CGSI +VF + +D+ W +I G A++
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
EM D ++AD T + +LSACS+ G + G ++ S + + + ++D+
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMY 258
Query: 352 GRARLLDRAIELIEAMP----------------------------------FEPTESILG 377
+ L+ A ++ + MP +P E L
Sbjct: 259 LKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLV 318
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSD---GELMMFANLYASCGQWEEANR 429
+L++C LEIG V + +++ L+D G ++ ++YA CG +EA R
Sbjct: 319 GVLNSCANLGVLEIGKWVHAYM-RRNHILADKFVGNALL--DMYAKCGSIDEAFR 370
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 178/506 (35%), Positives = 281/506 (55%), Gaps = 45/506 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFC-GHVYVQTALLKMYGSLR 59
++ G D +SFP LLKA LS+ +GL +HG K GF ++Q+AL+ MY +
Sbjct: 106 LRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACG 165
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---------------- 103
I DA +F+KM +D++ WN M+D ++ DH +KL + M
Sbjct: 166 RIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLS 225
Query: 104 -----------------LKDVTSFNI-------MISGYARIGKIHSARYIFDKVPAKDVV 139
+KD F + +++ YA G +H AR ++D++P+K +V
Sbjct: 226 ACAHAGNLSYGKAIHQFIKD-NGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMV 284
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+++ Y G ++ A +F +M+ K+++ W+ M++GY S +E + LF+EM+
Sbjct: 285 VSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRR 344
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+ PD +T+ SV+SACAN+G+L IH YA NG ALIDMYAKCG++ ++
Sbjct: 345 IVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAR 404
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
EVF K+V W++MI A+HG +A+ L M + ++ + +TFIG+L ACSHAG
Sbjct: 405 EVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAG 464
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
LV+EG + FS M + ++ + EHYGCMVDL RA L +A+ELIE MPF P I G+L
Sbjct: 465 LVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSL 524
Query: 380 LSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
+SAC H ++E+G+ A +++ + ++ DG L++ +N+YA +W++ R +M G
Sbjct: 525 MSACQNHGEIELGEFAATRLLELEPDH--DGALVVLSNIYAKEKRWDDVGLVRKLMKHKG 582
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ K S IEVN H F+ H
Sbjct: 583 VSKEKACSRIEVNNEVHVFMMADRYH 608
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 172/374 (45%), Gaps = 46/374 (12%)
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFN 111
S +D A +F +P N +L F+ ++ + L + PL D SF
Sbjct: 61 SPSALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPL-DRFSFP 119
Query: 112 IMISGYARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
++ +++ +IH F A + ++LI Y G + A +F KM
Sbjct: 120 PLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQ-SALIAMYAACGRIMDARFLFDKMS 178
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
++V+TWN M+ GY ++ Y V+ L++EMK +PD + + +VLSACA+ G+L G
Sbjct: 179 HRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKA 238
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV------------------------ 261
IH + DNG H T+L++MYA CG++ + EV
Sbjct: 239 IHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGM 298
Query: 262 -------FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
F + KD+ CW+AMI G A AL+L EM + D IT + ++SA
Sbjct: 299 VQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISA 358
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
C++ G + + + + +K+ G R L ++D+ + L +A E+ E MP + S
Sbjct: 359 CANVGALVQAKWIHTYADKN-GFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVIS 417
Query: 375 ILGALLSACVIHQD 388
++++A +H D
Sbjct: 418 -WSSMINAFAMHGD 430
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/491 (35%), Positives = 277/491 (56%), Gaps = 40/491 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ G+ AD++++P +L+A G+L S G H +KTGF Y ++L++MY L
Sbjct: 40 LRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGR 99
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----------- 109
+D A KVF++MP + ++ WN M+ + CG A+ L + M VT
Sbjct: 100 VDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTA 159
Query: 110 ----------------------FNIMISG-----YARIGKIHSARYIFDKVPAKDVVSWN 142
FN+ ++ Y + + A +F+++PA++++SW
Sbjct: 160 CSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWT 219
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
L+ Y AG+++KA +F + K++I W M+ ++ + E + LF +M+ V+P
Sbjct: 220 ILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEP 279
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D TV ++L+ CANLG+L+ G IH YA + + TALIDMY+KCG IE+SLEVF
Sbjct: 280 DRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVF 339
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
++ Q +D W A+I GLA +G AL+L +M S VK D +TFIG+LSAC H GLV
Sbjct: 340 WRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVD 399
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF-EPTESILGALLS 381
EG + F M + + + ++EHY C+V+LLGRA LLD A LI +P + + GALL+
Sbjct: 400 EGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINKDAMPLFGALLT 459
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC H ++E+ +R+ K +C + + ++D L+M +N+YA+ +WE+ R R M + K
Sbjct: 460 ACKAHGNVEMSERLTKRICEQDSQITDVNLLM-SNVYATASRWEDVIRVRGKMAHPTVKK 518
Query: 442 TAGSSVIEVNG 452
AG S+IEV G
Sbjct: 519 NAGCSLIEVKG 529
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 2/196 (1%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ R + V+ ++ +++A + D T VL A L G + H A
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVK 77
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + + ++L++MY G ++ + +VF + + + WN M+ G+ AA+ L
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVAL 137
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M S V D +T + ++ACS A + G + M+ FG L ++D+
Sbjct: 138 SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFN--LPVANALLDMYT 195
Query: 353 RARLLDRAIELIEAMP 368
+ L+ A++L E MP
Sbjct: 196 KNDCLEEAVKLFEQMP 211
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/467 (37%), Positives = 274/467 (58%), Gaps = 9/467 (1%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCI--GLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
+E DN++F L K+ + S C+ GL LH Q + GFC +YV T ++ MY
Sbjct: 70 KETCFAPDNFTFTTLTKSCSL--SMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFG 127
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-LKDVTSFNIMISGYA 118
+ A F++MP + ++W +++ + CG++D A KL D MP +KDV +N M+ G+
Sbjct: 128 KMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFV 187
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ G + SAR +FD++ K V++W ++I Y N +++ A ++F M +N+++WNTM+ G
Sbjct: 188 KSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGG 247
Query: 179 YLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
Y +++ E + LF EM+A ++ PD +T+ SVL A ++ G+L G H + L
Sbjct: 248 YCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDK 307
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
TA++DMY+KCG IE++ +F + K V WNAMI G AL+G AAL L M
Sbjct: 308 KVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM 367
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
K D+IT + +++AC+H GLV+EG + F M ++ G+ K+EHYGCMVDLLGRA L
Sbjct: 368 IE-EKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSL 425
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
A +LI MPFEP IL + LSAC ++D+E +R+ K + +DG ++ NL
Sbjct: 426 KEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKA-VELEPQNDGNYVLLRNL 484
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ +W++ +N+M K G S+IE+N +F++G H
Sbjct: 485 YAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTH 531
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 117/294 (39%), Gaps = 46/294 (15%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N+M+ YL ++ Y + L+ +++ PD T T++ +C+ + G ++H
Sbjct: 46 NSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIW 105
Query: 232 DNGLASNPHATTALIDMYAK-------------------------------CGSIEQSLE 260
G ++ + +T ++DMYAK CG ++ + +
Sbjct: 106 RFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASK 165
Query: 261 VFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F + VKDV +NAM+ G G +A +L EM V IT+ ++ +
Sbjct: 166 LFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV----ITWTTMIHGYCNIK 221
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPTESI 375
+ +LF M + R L + M+ + + I L + M +P +
Sbjct: 222 DIDAARKLFDAMPE-----RNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVT 276
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
+ ++L A L +G+ V K ++Y+ CG+ E+A R
Sbjct: 277 ILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKR 330
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/467 (37%), Positives = 274/467 (58%), Gaps = 9/467 (1%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCI--GLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
+E DN++F L K+ + S C+ GL LH Q + GFC +YV T ++ MY
Sbjct: 70 KETCFAPDNFTFTTLTKSCSL--SMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFG 127
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-LKDVTSFNIMISGYA 118
+ A F++MP + ++W +++ + CG++D A KL D MP +KDV +N M+ G+
Sbjct: 128 KMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFV 187
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ G + SAR +FD++ K V++W ++I Y N +++ A ++F M +N+++WNTM+ G
Sbjct: 188 KSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGG 247
Query: 179 YLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
Y +++ E + LF EM+A ++ PD +T+ SVL A ++ G+L G H + L
Sbjct: 248 YCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDK 307
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
TA++DMY+KCG IE++ +F + K V WNAMI G AL+G AAL L M
Sbjct: 308 KVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM 367
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
K D+IT + +++AC+H GLV+EG + F M ++ G+ K+EHYGCMVDLLGRA L
Sbjct: 368 IE-EKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSL 425
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
A +LI MPFEP IL + LSAC ++D+E +R+ K + +DG ++ NL
Sbjct: 426 KEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKA-VELEPQNDGNYVLLRNL 484
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ +W++ +N+M K G S+IE+N +F++G H
Sbjct: 485 YAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTH 531
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 117/294 (39%), Gaps = 46/294 (15%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N+M+ YL ++ Y + L+ +++ PD T T++ +C+ + G ++H
Sbjct: 46 NSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIW 105
Query: 232 DNGLASNPHATTALIDMYAK-------------------------------CGSIEQSLE 260
G ++ + +T ++DMYAK CG ++ + +
Sbjct: 106 RFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASK 165
Query: 261 VFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F + VKDV +NAM+ G G +A +L EM V IT+ ++ +
Sbjct: 166 LFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV----ITWTTMIHGYCNIK 221
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPTESI 375
+ +LF M + R L + M+ + + I L + M +P +
Sbjct: 222 DIDAARKLFDAMPE-----RNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVT 276
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
+ ++L A L +G+ V K ++Y+ CG+ E+A R
Sbjct: 277 ILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKR 330
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 183/507 (36%), Positives = 275/507 (54%), Gaps = 50/507 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV + ++F LL+A +L +HGQ ++ GF V+VQ AL+ +Y RC
Sbjct: 101 MRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVY--YRC 158
Query: 61 ------------------IDD--------------------AFKVFEKMPEKDIIAWNSM 82
+D A +FE MPE+++++WN++
Sbjct: 159 GGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTV 218
Query: 83 LDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
+ FA G M A + D MP ++ S+N+MISGYA G + +AR +FD++ KDVVSW
Sbjct: 219 VAGFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWT 278
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVK 201
+++ AY G+++ A E+F M VKN+++WN M+TGY + Y E + F M G +
Sbjct: 279 AMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFR 338
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT----TALIDMYAKCGSIEQ 257
PD T+ SV+SACA LGS+E I + SN H T ALIDM+AKCG + +
Sbjct: 339 PDEATLVSVVSACAQLGSVEYCNWISSFIGK----SNTHLTVALGNALIDMFAKCGDVGR 394
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +FYK + + + W MI G A +G AL + M V+ D FI L+AC+H
Sbjct: 395 AQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTH 454
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
GL+QEG +F+ M + + + ++EHYGC+VDLLGRA L AI IE+MP EP+ I
Sbjct: 455 GGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWV 514
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
LLS+CV H + E+ + V+K + + S ++++ +N A G+W+ R M +
Sbjct: 515 TLLSSCVAHGNAELIEYVSKKITELEPFNSSYQVLV-SNCSALEGRWDGVIGARTSMRNW 573
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
GI K GSS+I+V H+FLA H
Sbjct: 574 GIEKVPGSSLIQVGSEVHEFLAKDTRH 600
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/466 (36%), Positives = 272/466 (58%), Gaps = 5/466 (1%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D ++FP+LLKA S S G +HG +K G YVQ +L++ YG+ A
Sbjct: 100 GFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCA 159
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKI 123
KVF++M +D+++WNS++ F G D A+ + M ++ +T+ +++ AR G +
Sbjct: 160 GKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDL 219
Query: 124 HSARYIFDKVPAK---DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ + I + + ++V N+++ Y G +A +F ++ +++++W M+TG +
Sbjct: 220 CTGKGIHGVIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLV 279
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+S + ++LF M+ + PD + +TSVLSACA+LG+L+ G +H Y G+ + H
Sbjct: 280 QSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIH 339
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TA++DMYAKCG IE +L++FY ++ F WNA++ GLA+HG + AL L M S
Sbjct: 340 IGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISG 399
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
VK ++ITF+ +L+AC H GLV EG + F M K + + KLEHYGCM+DL RA LL+ A
Sbjct: 400 VKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEA 459
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+EL MP +P I G LL+AC ++E+ R+ + + ++ G ++ +N+ A
Sbjct: 460 VELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYI-LELDHDDSGVFVLLSNISAI 518
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
+W R R +M D G+ K GSSVIEV+G H+F+ G I HL
Sbjct: 519 NQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQ 564
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 35/288 (12%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
+N+++ GY+ + V ++ M PD T +L AC+N G ++H
Sbjct: 73 FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
GL ++ + +LI Y CG + +VF + V+DV WN++I G G+ A+
Sbjct: 133 KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAIS 192
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV-------------- 337
+ M+ V+ T + +L+AC+ G + G + +E+ F V
Sbjct: 193 VFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMYVK 249
Query: 338 ---------------TRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGAL 379
TR + + M+ L ++ +++EL M P IL ++
Sbjct: 250 NGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSV 309
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
LSAC L+ G V + + + ++YA CG E A
Sbjct: 310 LSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMA 357
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 33/233 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ LG+ D +L A L + G +H + G +++ TA++ MY C
Sbjct: 294 MRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGC 353
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
I+ A K+F M +++ WN++L A G + A+ L ++M + V +F +++
Sbjct: 354 IEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTA 413
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
G + R FD M K + K+ + M+
Sbjct: 414 CCHCGLVDEGRKYFDN---------------------MSKLYNLLPKLE-----HYGCMI 447
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+ R+ L E V+L M +KPD L +L+AC +G++E RI Y
Sbjct: 448 DLFCRAGLLEEAVELARTMP---MKPDVLIWGLLLNACTTVGNIELSHRIQDY 497
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/397 (40%), Positives = 239/397 (60%), Gaps = 1/397 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA F+ MP KD+ +WN+M+ A A G M A +L MP K+ S++ M+SGY
Sbjct: 120 VHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVAC 179
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + +A F P + V++W ++I Y G +E A +F++M ++ ++TWN M+ GY+
Sbjct: 180 GDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYV 239
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + + LF M VKP+ L++TSVL C+NL +L+ G ++H L+S+
Sbjct: 240 ENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTT 299
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
A T+L+ MY+KCG ++ + E+F + KDV CWNAMI G A HG G AL+L EM
Sbjct: 300 AGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEG 359
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+K D ITF+ +L AC+HAGLV G + F+ M +DFG+ K EHY CMVDLLGRA L A
Sbjct: 360 LKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEA 419
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
++LI++MPF+P +I G LL AC IH++L + + AK + ++ G + + AN+YA+
Sbjct: 420 VDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQL-ANVYAA 478
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+W+ R M D +VK G S IE+N H F
Sbjct: 479 QNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGF 515
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV + S +L LS+ +G +H K T+L+ MY
Sbjct: 254 MLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGD 313
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
+ DA+++F ++P KD++ WN+M+ +A G A++L D M
Sbjct: 314 LKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEM 355
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H + +N +ASN LI Y +CG I+ ++ VF +VK WN+++ A
Sbjct: 34 HEFNNNNVIASN-----KLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGH 88
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
+ + L E + + +++ +L+ H V + F M + + +
Sbjct: 89 FEYARQLFE---KIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMP-----LKDVASWNT 140
Query: 347 MVDLLGRARLLDRAIELIEAMP 368
M+ L + L+ A L AMP
Sbjct: 141 MISALAQVGLMGEARRLFSAMP 162
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 167/445 (37%), Positives = 259/445 (58%), Gaps = 33/445 (7%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D ++FP +LKA L +G +HG+ + GF + +V+ L+ +
Sbjct: 74 VRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFH---------- 123
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
A+CG + A L D +DV +++ + +GYAR G++
Sbjct: 124 ---------------------ANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGV 162
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD++P KD+VSWN +I Y GEME A ++F ++ ++V+TWN M+ GY+
Sbjct: 163 ARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSN 222
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NPHATTA 244
+ +++F+EM++ PD +T+ S+LSAC +LG L+ G RIH ++ G + A
Sbjct: 223 QQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNA 282
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LIDMYAKCGSI ++LEVF + KDV WN+++ GLA HG+ ++ L EM ++ D
Sbjct: 283 LIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPD 342
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+ITF+G+L ACSHAG V+EG + F M ++ + + HYGCMVDLLGRA LL+ A + I
Sbjct: 343 EITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFI 402
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
+ M EP + LL AC IH ++E+G R A M K + G+ ++ +N+YAS G+W
Sbjct: 403 DTMKIEPNAIVWRTLLGACRIHGNVELGRR-ANMQLLKMRHDESGDYVLLSNIYASRGEW 461
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIE 449
+ + R +M+D+G+ K AG S+IE
Sbjct: 462 DGVEKVRKLMDDSGVRKEAGCSLIE 486
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 125/278 (44%), Gaps = 17/278 (6%)
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
+G M A ++F + + WNTM+ G +S + + L+ +M+ G V+PD T V
Sbjct: 25 SGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFV 84
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
L AC L ++ G +H G SN LI +A CG + + +F S +DV
Sbjct: 85 LKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDV 144
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
W+A+ G A G A +L EM VK D +++ +++ + G ++ +LF
Sbjct: 145 VAWSALTAGYARRGELGVARQLFDEMP---VK-DLVSWNVMITGYAKRGEMESARKLFDE 200
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQ 387
+ K R + + M+ +A+E+ E M P E + +LLSAC
Sbjct: 201 VPK-----RDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLG 255
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMM---FANLYASCG 422
DL+ G R+ C D +++ ++YA CG
Sbjct: 256 DLDAGQRIH--CCISEMGFRDLSVLLGNALIDMYAKCG 291
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 108/265 (40%), Gaps = 44/265 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLR 59
M+ +G D + LL A L G +H + GF V + AL+ MY
Sbjct: 232 MRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCG 291
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
I A +VF+ M EKD+ WNS+L A G + ++ L M R
Sbjct: 292 SIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEM----------------R 335
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNT 174
KI D +++ +++A ++AG +E+ + F M + N+ +
Sbjct: 336 KLKIRP-----------DEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGC 384
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI-------- 226
MV R+ L E D D MK ++P+ + ++L AC G++E G R
Sbjct: 385 MVDLLGRAGLLNEAFDFIDTMK---IEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMR 441
Query: 227 HVYATDNGLASNPHATTALIDMYAK 251
H + D L SN +A+ D K
Sbjct: 442 HDESGDYVLLSNIYASRGEWDGVEK 466
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/449 (36%), Positives = 269/449 (59%), Gaps = 2/449 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ D +++P L+KA + G+ HG ++ G G V+V T+L+ +YG
Sbjct: 114 MKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGE 173
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A KVF++M E+++++W +M+ +AS + A KL D MP K+ S+N +ISGY +
Sbjct: 174 ILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKC 233
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + SAR +FD++P ++VVS+ ++I Y +G+M A +F++ ++V+ W+ +++GY+
Sbjct: 234 GDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYV 293
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL-ASNP 239
++ E V +F EM + NVKPD + S++SAC+ +GSLE + Y + +
Sbjct: 294 QNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRA 353
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
H ALIDM AKCGS++++ ++F + +D+ + +M+ GL++HG G A+ L M +
Sbjct: 354 HVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNE 413
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ DD+ F +L+ACS AGLV EGC F M+ D+ + +HY CMVDLLGRA L
Sbjct: 414 GLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKE 473
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A EL+++MP EP GALL AC +H D+E+G+ VA + + + G ++ +N+YA
Sbjct: 474 AYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQL-FELEPQNAGNYVLLSNIYA 532
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+ QW + + RN M + GI K G S I
Sbjct: 533 AAEQWLDVSLLRNKMRERGIRKIPGCSWI 561
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 13/264 (4%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F + + + WNT + GY + V LF MK + PD T S++ AC+ +
Sbjct: 79 VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 138
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
++ G H A G+ + T+LID+Y KCG I + +VF + ++V W AMI G
Sbjct: 139 VKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAG 198
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
A A KL EM + + +++ ++S G ++ ++F M R
Sbjct: 199 YASFSDLVEARKLFDEMPEK----NAVSWNAIISGYVKCGDLRSARKMFDEMPH-----R 249
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
+ + M+D ++ + A + E P E AL+S V + ++ +
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAP-ERDVVAWSALISGYVQNGQPNEAVKIFLEM 308
Query: 400 CAKSNYLSDGELMMFANLYASCGQ 423
C+++ + E +M +L ++C Q
Sbjct: 309 CSRN--VKPDEFIM-VSLMSACSQ 329
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 164/457 (35%), Positives = 277/457 (60%), Gaps = 1/457 (0%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+++ P +LK L + G +HG +K GF +V ++L+ MY I+ KV
Sbjct: 112 PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKV 171
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F++M +KD+++WNS++D +A CG+++ A+++ + MP KD S+ I+I G ++ GK+ +AR
Sbjct: 172 FDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAAR 231
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD++P ++ VSWN++I Y AG+ A E+F +M ++++TWN+M+TGY R++ + +
Sbjct: 232 DVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTK 291
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ LF+ M ++ P+Y T+ +SA + + SL TG +H Y +G ++ T LI+
Sbjct: 292 ALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIE 351
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY+KCGS++ +L VF K + W ++I+GL +HG L+L EM + +K IT
Sbjct: 352 MYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAIT 411
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
FIG+L+ACSHAG ++ F M D+G+ +EHYGC++D+L RA L+ A + IE M
Sbjct: 412 FIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERM 471
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P + + I +LLS H ++ +G+ A+ + + + G ++ +N+YA+ G WE+
Sbjct: 472 PIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPD-TTGCYVILSNMYAAAGLWEKV 530
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R MM G+ K G S IE GS H+F+ G H
Sbjct: 531 RQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSH 567
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 138/307 (44%), Gaps = 38/307 (12%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
++ A +F + +++WN ++ Y+ +Q + + LF ++ V PD T+ VL
Sbjct: 65 LQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKG 123
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
CA LG+L+ G +IH G + ++L+ MY+KCG IE +VF + + KDV W
Sbjct: 124 CARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSW 183
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
N++I G A G AL++ EM + D ++ L+ S +G ++ ++F RM
Sbjct: 184 NSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDVFDRMPI 239
Query: 334 DFGVT--------------------------RKLEHYGCMVDLLGRARLLDRAIELIEAM 367
V+ R L + M+ R + +A++L E M
Sbjct: 240 RNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVM 299
Query: 368 PFEPTE----SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCG 422
E +ILGA +SA L G V + KS + +DG L + +Y+ CG
Sbjct: 300 LREDISPNYTTILGA-VSAASGMVSLGTGRWVHSYI-VKSGFKTDGVLGTLLIEMYSKCG 357
Query: 423 QWEEANR 429
+ A R
Sbjct: 358 SVKSALR 364
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 186/506 (36%), Positives = 277/506 (54%), Gaps = 48/506 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLR 59
M LG ++YSFP LLK+ + G +H Q +K G CG YV T+L+ MY
Sbjct: 55 MVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLG-CGLDRYVHTSLISMYARNG 113
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
++DA KVF+ +D+++ +++ +AS G A K+ D + +DV S+N MI+GY
Sbjct: 114 GLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVE 173
Query: 120 IGKIHSARYIFDKV------P--------------------AKDVVSW------------ 141
G+ A +F ++ P + V SW
Sbjct: 174 NGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSS 233
Query: 142 -----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
N+LI Y+ G++E A +F+ + K+V++WNT++ GY + LY E + LF EM
Sbjct: 234 SLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEML 293
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGS 254
P+ +T+ SVL ACA+LG+++ G IHVY G+ + T+LIDMYAKCG
Sbjct: 294 RSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGD 353
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
IE + +VF + + WNAMI G A+HG AA L M + V+ DDITF+GLLSA
Sbjct: 354 IEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSA 413
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
CSH+GL+ G ++F M +D+ +T KLEHYGCM+DLLG + L A E+I MP EP
Sbjct: 414 CSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGV 473
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
I +LL AC H +LE+ + A+ + K + G ++ +N+YA+ G+WE+ R R ++
Sbjct: 474 IWCSLLKACKKHGNLELAESFAQKL-IKIEPENSGSYVLLSNIYATAGRWEDVARVRGVL 532
Query: 435 NDTGIVKTAGSSVIEVNGSYHKFLAG 460
N G+ K G S IEV+ H+F+ G
Sbjct: 533 NGKGMKKVPGCSSIEVDSVVHEFIIG 558
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 161/355 (45%), Gaps = 44/355 (12%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQ----MDHAMKLIDLMPLKDVTSFNIMISGYAR 119
A VFE + E +++ WN+ML AS ++ ++++ L L + SF ++ A+
Sbjct: 17 AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76
Query: 120 IGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT- 174
R I +V D SLI Y G +E A ++F ++V++
Sbjct: 77 SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136
Query: 175 ------------------------------MVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
M+TGY+ + Y E ++LF EM NV+PD
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196
Query: 205 LTVTSVLSACANLGSLETGARIHVYA----TDNGLASNPHATTALIDMYAKCGSIEQSLE 260
T+ SV+SACA GS+E G ++H + D+G +S+ ALID+Y+KCG +E +
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F KDV WN +I G AL L EM S +D+T + +L AC+H G
Sbjct: 257 LFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGA 316
Query: 321 VQEGCELFSRMEKDF-GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
+ G + ++K GVT + ++D+ + ++ A ++ +M + S
Sbjct: 317 IDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS 371
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 275/463 (59%), Gaps = 44/463 (9%)
Query: 8 ADNYSFPLLLKA---AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
+ Y++P +LKA AG+++ G+ +H +K G G ++ ++ ++MY S + +A
Sbjct: 135 PNKYTYPAVLKACSDAGVVAE---GVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEA 191
Query: 65 FKVFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
++ + K E D + WN+ MI GY R G++
Sbjct: 192 RRILDDKGGEVDAVCWNA-------------------------------MIDGYLRFGEV 220
Query: 124 HSARYIFDKVPAKDVVS-WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+AR +F+ +P + ++S WN++I ++ G +E A E F +M ++ I+W+ M+ GY++
Sbjct: 221 EAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQE 280
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
++E +++F +M+ ++P + SVLSACANLG+L+ G IH YA N + +
Sbjct: 281 GCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG 340
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
T+L+DMYAKCG I+ + EVF K K+V WNAMI GLA+HG A+ L +M+ +
Sbjct: 341 TSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IN 397
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
++ITF+G+L+AC+H GLVQ+G +F+ M K++GV ++EHYGC+VDLLGRA LL A +
Sbjct: 398 PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEK 457
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
++ ++P EPT ++ GALL AC H ++E+G+RV K++ S G + +N+YA G
Sbjct: 458 VVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNS-GRYTLLSNIYAKAG 516
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEV-NGSYHKFLAGGIGH 464
+WEE R +M + GI T G+S+I++ G HKF+ G H
Sbjct: 517 RWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSH 559
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 141/315 (44%), Gaps = 33/315 (10%)
Query: 143 SLILAYTNAG-----EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
SL+ +Y N E + +F + NV WN M+ + + + + L+ EM
Sbjct: 71 SLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMV 130
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ +P+ T +VL AC++ G + G ++H + +GL + H ++ I MYA G + +
Sbjct: 131 AHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVE 190
Query: 258 SLEVF-YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ + K D CWNAMI G G AA +L M D + + T+ ++S S
Sbjct: 191 ARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFS 247
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTE 373
G+V+ E F M++ ++ + M+D + A+E+ M E P +
Sbjct: 248 RCGMVEVAREFFDEMKERDEIS-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRK 302
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS-DGEL-MMFANLYASCGQ----WE-- 425
+L ++LSAC L+ G + AK N + DG L ++YA CG+ WE
Sbjct: 303 FVLPSVLSACANLGALDQGRWIHTY--AKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVF 360
Query: 426 ------EANRWRNMM 434
E + W M+
Sbjct: 361 EKMSNKEVSSWNAMI 375
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 167/447 (37%), Positives = 254/447 (56%), Gaps = 32/447 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
AL+ Y I++A K+F KMP++D+++WN+M+ +A G M A +L D+ P++DV
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVF 325
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++ ++SGYA+ G + A+ +FD +P K+ VSWN+++ AY ME+A E+F M +N
Sbjct: 326 TWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRN 385
Query: 169 VITWNTMVTGYLR-----------------------------SQLYI--EVVDLFDEMKA 197
V +WNTM+TGY + SQ+ E + LF EM
Sbjct: 386 VASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGR 445
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ VLS CA++ +LE G ++H G AL+ MY KCGS+E+
Sbjct: 446 CGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEE 505
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ F + + +DV WN MI G A HG+G AL++ M + K DDIT +G+L+ACSH
Sbjct: 506 AHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSH 565
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+GLV++G F M +DFGV K EHY CM+DLLGRA LD A+ L++ MPFEP ++ G
Sbjct: 566 SGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWG 625
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
ALL A IH++ E+G A+ + + + G ++ +N+YAS G+W + ++ R++M++
Sbjct: 626 ALLGASRIHRNSELGRNAAEKIF-ELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHER 684
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S IEV H F G H
Sbjct: 685 GVKKVPGFSWIEVQNKVHTFSVGDSVH 711
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 16/283 (5%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
LL G + D +F++MP KD +++N M+ + A+ G + A DL P KD S+
Sbjct: 175 LLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSW 234
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N M++ Y R G+I AR +FD D +SWN+L+ Y ++E+A +MF KM ++V+
Sbjct: 235 NGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVV 294
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP--DYLTVTSVLSACANLGSLETGARIHV 228
+WNTMV+GY R E LFD V P D T T+++S A G LE R+
Sbjct: 295 SWNTMVSGYARRGDMAEARRLFD------VAPIRDVFTWTAIVSGYAQNGMLEEAKRVFD 348
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
D S A++ Y + +E++ E+F ++V WN M+ G A G
Sbjct: 349 AMPDKNAVS----WNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDE 404
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
A + G M + D +++ +L+A S G +E +LF M
Sbjct: 405 ARAIFGMMP----QKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 144/308 (46%), Gaps = 17/308 (5%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA ++F MP + +N+ML +A+ G++ A+ +P D S+N ++
Sbjct: 123 VPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVS 182
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ R +FD++P KD VS+N +I ++ N G + A F K+ ++WN M+ Y+
Sbjct: 183 SSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYV 242
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R+ E +LFD + D ++ ++++ +E ++ + S
Sbjct: 243 RNGRIQEARELFD----SRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVS--- 295
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
++ YA+ G + ++ +F + ++DVF W A++ G A +G A ++ M D
Sbjct: 296 -WNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK- 353
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ +++ +++A +++E ELF M R + + M+ +A +LD A
Sbjct: 354 ---NAVSWNAMMAAYVQRRMMEEAKELFDAMP-----CRNVASWNTMLTGYAQAGMLDEA 405
Query: 361 IELIEAMP 368
+ MP
Sbjct: 406 RAIFGMMP 413
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 127/252 (50%), Gaps = 10/252 (3%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C +V +L Y +D+A +F MP+KD ++W +ML A++ G + ++L
Sbjct: 383 CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKE 442
Query: 102 M----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGE 153
M + ++F ++S A I + + ++ N+L+ Y G
Sbjct: 443 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGS 502
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
ME+A F++M ++V++WNTM+ GY R E +++FD M+ + KPD +T+ VL+A
Sbjct: 503 MEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAA 562
Query: 214 CANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVF 271
C++ G +E G + + D G+A+ P T +ID+ + G +++++ + + D
Sbjct: 563 CSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDST 622
Query: 272 CWNAMILGLALH 283
W A++ +H
Sbjct: 623 MWGALLGASRIH 634
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 162/366 (44%), Gaps = 32/366 (8%)
Query: 72 PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD 131
P+ ++I N + A G++ A +L MP + +++N M++GYA G++ A F
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162
Query: 132 KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
+P D S+N+L+ A + + +F +M VK+ +++N M++ + L
Sbjct: 163 SIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHY 222
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYA 250
FD + D ++ +L+A G ++ + T+ + ++ N AL+ Y
Sbjct: 223 FDLAP----EKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWN-----ALMAGYV 273
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
+ IE++ ++F K +DV WN M+ G A G A +L D D T+
Sbjct: 274 QRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF----DVAPIRDVFTWTA 329
Query: 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
++S + G+++E +F M V+ + M+ + R+++ A EL +AMP
Sbjct: 330 IVSGYAQNGMLEEAKRVFDAMPDKNAVS-----WNAMMAAYVQRRMMEEAKELFDAMPCR 384
Query: 371 PTESI---------LGALLSACVIHQDLEIGDRV--AKMVCAKSNY-LSDGELMMFANLY 418
S G L A I + D V A M+ A S S+ L +F +
Sbjct: 385 NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM- 443
Query: 419 ASCGQW 424
CG+W
Sbjct: 444 GRCGEW 449
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + +F +L +++ G+ LH + IK G+ +V ALL MY
Sbjct: 443 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGS 502
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+++A FE+M E+D+++WN+M+ +A G A+++ D M +I + G
Sbjct: 503 MEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVG 558
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/450 (37%), Positives = 261/450 (58%), Gaps = 33/450 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D ++FP +LKA L +G +HG+ + GF + +V+ L+ +
Sbjct: 104 MENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFH----- 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A+CG + A L D +DV +++ + +GYAR
Sbjct: 159 --------------------------ANCGDLAVARALFDGSAKRDVVAWSALTAGYARR 192
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G++ AR +FD++P KD+VSWN +I Y GEME A ++F ++ ++V+TWN M+ GY+
Sbjct: 193 GELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYV 252
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NP 239
+ +++F+EM++ PD +T+ S+LSAC +LG L+ G RIH ++ G +
Sbjct: 253 LCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSV 312
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMYAKCGSI ++LEVF + KDV WN+++ GLA HG+ ++ L EM
Sbjct: 313 LLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKL 372
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
++ D+ITF+G+L ACSHAG V+EG + F M ++ + + HYGCMVDLLGRA LL+
Sbjct: 373 KIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNE 432
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A + I+ M EP + LL AC IH ++E+G R A M K + G+ ++ +N+YA
Sbjct: 433 AFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRR-ANMQLLKMRHDESGDYVLLSNIYA 491
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
S G+W+ + R +M+D+G+ K AG S+IE
Sbjct: 492 SRGEWDGVEKVRKLMDDSGVRKEAGCSLIE 521
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 125/278 (44%), Gaps = 17/278 (6%)
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
+G M A ++F + + WNTM+ G +S + + L+ +M+ G V+PD T V
Sbjct: 60 SGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFV 119
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
L AC L ++ G +H G SN LI +A CG + + +F S +DV
Sbjct: 120 LKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDV 179
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
W+A+ G A G A +L EM VK D +++ +++ + G ++ +LF
Sbjct: 180 VAWSALTAGYARRGELGVARQLFDEMP---VK-DLVSWNVMITGYAKRGEMESARKLFDE 235
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQ 387
+ K R + + M+ +A+E+ E M P E + +LLSAC
Sbjct: 236 VPK-----RDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLG 290
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMM---FANLYASCG 422
DL+ G R+ C D +++ ++YA CG
Sbjct: 291 DLDAGQRIH--CCISEMGFRDLSVLLGNALIDMYAKCG 326
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 170/473 (35%), Positives = 264/473 (55%), Gaps = 34/473 (7%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ PLL KA L LH ++IK G V + TALL Y + DA +F
Sbjct: 45 DSSVAPLLFKACASLPFLHYVKALHAESIKAGSESDVIIGTALLTTYSKCGVVRDARNLF 104
Query: 69 EKMPEKDIIAWNSMLDA-------------------------------FASCGQMDHAMK 97
+ MPE++++ WN+M+ FA G + A +
Sbjct: 105 DTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARR 164
Query: 98 LIDLMP--LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEME 155
L D +P LK+V ++ +M+ GYARIG++ +AR +F+ +P ++ W+S+I Y G +
Sbjct: 165 LFDEVPHELKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVT 224
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
+A +F + V+N+ WN+M+ GY+++ + + F+ M A +PD TV SVLSACA
Sbjct: 225 EAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACA 284
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
LG L+ G +IH G+ NP + L+DMYAKCG + + VF K++FCWNA
Sbjct: 285 QLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNA 344
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
MI G A++G L+ G M +S ++ D ITF+ +LSAC+H GLV E E+ S+ME +
Sbjct: 345 MISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKME-GY 403
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395
+ ++HYGCMVDLLGRA L A +LI MP +P +++LGA+L AC IH D+ + ++V
Sbjct: 404 RIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMKPNDTVLGAMLGACRIHSDMNMAEQV 463
Query: 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
K++C + + ++ +N+YA+ +WE+A R + + D G + G S I
Sbjct: 464 MKLICEEPVTGASSHNVLLSNIYAASEKWEKAERMKRITVDGGSQRIPGCSSI 516
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 8/171 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D ++ +L A L +G +H G + +V + L+ MY + +A
Sbjct: 268 GFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNA 327
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARI 120
VFE EK+I WN+M+ FA G+ ++ M ++ +F ++S A
Sbjct: 328 RLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHR 387
Query: 121 GKIHSARYIFDKVPAKD----VVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
G + A + K+ + + ++ AG ++ A ++ +M +K
Sbjct: 388 GLVTEALEVISKMEGYRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMK 438
>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 179/478 (37%), Positives = 265/478 (55%), Gaps = 34/478 (7%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D P LLKA LH ++IK G V++ TA++ Y + DA KVF
Sbjct: 50 DPTVIPQLLKACDSHPFLPYVKSLHAESIKAGSDVDVFIGTAIVAAYAKCGVVCDARKVF 109
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ MPE++++ WN+M+ + G A+ + MP K S++ MI G+AR G +AR
Sbjct: 110 DLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTARK 169
Query: 129 IFDKVP--AKDVVSWNSLILAYTNAGEMEKAGE--------------------------- 159
FDKVP KDVV W ++ Y GEME A E
Sbjct: 170 FFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVM 229
Query: 160 ----MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
+F+++ V+N+ WN+M+ GY+++ + ++ F EM +PD TV SVLSACA
Sbjct: 230 EAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACA 289
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
LG L+ G ++H G+A N + LIDMYAKCG + + VF ++VFCWNA
Sbjct: 290 QLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNA 349
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
MI G A++G L+ L M +S ++ D +TFI +LSAC+H GL+ E E+ S+ME ++
Sbjct: 350 MIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHGGLMSEALEVISKME-EY 408
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395
G+ + HYGCMVDLLGRA L A ELI+ MP +P E++LGA++ AC IH D+++ ++V
Sbjct: 409 GIEMGIRHYGCMVDLLGRAGKLKEAYELIKRMPMKPNETVLGAMIGACWIHSDMKMAEQV 468
Query: 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGS 453
KM+ A S + ++ +N+YA+ +WE+A R+ M D G K G S I ++ S
Sbjct: 469 MKMIGADSAACVNSHNVLLSNIYAASEKWEKAEMIRSSMVDGGSEKIPGYSSIILSNS 526
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D ++ +L A L G +H G + +V + L+ MY + +A
Sbjct: 273 GFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNA 332
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARI 120
VFE E+++ WN+M+ FA GQ + ++ +D M D +F ++S A
Sbjct: 333 RLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHG 392
Query: 121 GKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
G + A + K+ + + ++ AG++++A E+ K+M +K
Sbjct: 393 GLMSEALEVISKMEEYGIEMGIRHYGCMVDLLGRAGKLKEAYELIKRMPMK 443
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/499 (33%), Positives = 277/499 (55%), Gaps = 42/499 (8%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D ++FP LLK + G +L +K GF +++VQ A + M+ R +D A
Sbjct: 103 IKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLAR 162
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAM--------------------------KLI 99
KVF+ +++ WN ML + Q + KL
Sbjct: 163 KVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLK 222
Query: 100 DLMPLKDVTSF-------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
DL K + + N++I +A G++ A+ +FD + +DV+SW S++
Sbjct: 223 DLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVT 282
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
+ N G+++ A + F ++ ++ ++W M+ GYLR +IE + LF EM+ NVKPD T
Sbjct: 283 GFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFT 342
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ S+L+ACA+LG+LE G + Y N + ++ ALIDMY KCG++ ++ +VF +
Sbjct: 343 MVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH 402
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
KD F W AMI+GLA++G+G AL + M ++ + D+IT+IG+L AC+HAG+V++G
Sbjct: 403 HKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQS 462
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F M G+ + HYGCMVDLLGRA L+ A E+I MP +P + G+LL AC +H
Sbjct: 463 FFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVH 522
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
+++++ + AK + +G + ++ N+YA+C +WE + R +M + GI KT G
Sbjct: 523 KNVQLAEMAAKQILELEP--ENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGC 580
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S++E+NG+ ++F+AG H
Sbjct: 581 SLMELNGNVYEFVAGDQSH 599
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 154/339 (45%), Gaps = 51/339 (15%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM---YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
+H TIK G Q ++ + S + I A +VF+ +P+ + WN+M+ ++
Sbjct: 26 IHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIY-ARQVFDAIPQPTLFIWNTMIKGYSR 84
Query: 89 CGQMDHAMKLIDLMPLKDVT----SFNIMISGYAR-----IGKI---HSARYIFDKVPAK 136
+ + + LM ++ +F ++ G+ R GK+ H+ ++ FD
Sbjct: 85 INHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDS---- 140
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
++ + I ++ ++ A ++F V+TWN M++GY R + + + LF EM+
Sbjct: 141 NLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEME 200
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
V P+ +T+ +LSAC+ L LE G I+ Y + N LIDM+A CG ++
Sbjct: 201 KRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMD 260
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGY------------------------GY----- 287
++ VF + +DV W +++ G A G GY
Sbjct: 261 EAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNR 320
Query: 288 --AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
AL L EM S VK D+ T + +L+AC+H G ++ G
Sbjct: 321 FIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG 359
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 146/325 (44%), Gaps = 43/325 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFC-GHVYVQTALLKMYGSLR 59
M++ GV ++ + L+L A L G ++ + I G ++ ++ L+ M+ +
Sbjct: 199 MEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY-KYINGGIVERNLILENVLIDMFAACG 257
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+D+A VF+ M +D+I+W S++ FA+ GQ+D A K D +P +D S+ MI GY R
Sbjct: 258 EMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLR 317
Query: 120 IGKIHSARYIFDKVPAKDVVS----------------------W---------------- 141
+ + A +F ++ +V W
Sbjct: 318 MNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFV 377
Query: 142 -NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
N+LI Y G + KA ++FK+M K+ TW M+ G + E + +F M ++
Sbjct: 378 GNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASI 437
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYAT-DNGLASNPHATTALIDMYAKCGSIEQSL 259
PD +T VL AC + G +E G + T +G+ N ++D+ + G +E++
Sbjct: 438 TPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAH 497
Query: 260 EVFYKSQVK-DVFCWNAMILGLALH 283
EV VK + W +++ +H
Sbjct: 498 EVIVNMPVKPNSIVWGSLLGACRVH 522
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 103/256 (40%), Gaps = 25/256 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D ++ +L A L + +G + K +V AL+ MY
Sbjct: 331 MQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGN 390
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
+ A KVF++M KD W +M+ A G + A+ + M +T I G
Sbjct: 391 VGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCA 450
Query: 118 -ARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + + F + + +V + ++ AG +E+A E+ M VK N I
Sbjct: 451 CTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSI 510
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNV---KPD----YLTVTSVLSACANLGSLETG 223
W +++ G R +++ EM A + +P+ Y+ + ++ +AC +L
Sbjct: 511 VWGSLL-GACRVHKNVQLA----EMAAKQILELEPENGAVYVLLCNIYAACKRWENLR-- 563
Query: 224 ARIHVYATDNGLASNP 239
++ + G+ P
Sbjct: 564 -QVRKLMMERGIKKTP 578
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 183/461 (39%), Positives = 267/461 (57%), Gaps = 18/461 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + ++ P +LKA G S+ +++HG IK G V+VQ AL+ +Y I A
Sbjct: 209 GLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCA 268
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKI 123
K+F+ + +K +++WNSM I++ +K D+ N + YA+ G +
Sbjct: 269 RKLFDDITDKTLVSWNSM----------------IEITGVKIDIIVRNALXDMYAKCGNL 312
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
HSA+ IFD+ K+VVSW S+I AY G +E A ++F +M KNV++WN+M++ YLR
Sbjct: 313 HSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREG 372
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
Y E +DLF++M+ V PD T+ S+L+AC+ LG L G +IH Y N A
Sbjct: 373 QYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYN 432
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
+LIDMYAKCG + +L++F + K++ WN +I LALHG G A+KL EM
Sbjct: 433 SLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLP 492
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D+IT GLLSACSH+GLV G F RM + V R++EHY CMVDLLGR LL AIEL
Sbjct: 493 DEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIEL 552
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I MP +P + GALL AC IH ++EIG ++ K + + S G ++ +N+Y +
Sbjct: 553 IGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPH-SGGLYVLISNIYWEAQR 611
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
WE+ + R +M D GI K S IE++G ++F+ H
Sbjct: 612 WEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRH 652
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 125/291 (42%), Gaps = 20/291 (6%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A +AG+++ A MF ++ N +N+++ GY S I+ V LF M + P+ T
Sbjct: 157 AVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFT 216
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ VL AC + +H A G+ S ALI +Y CG I + ++F
Sbjct: 217 LPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDIT 276
Query: 267 VKDVFCWNAM--ILGLALHGYGYAALKLL----GEMN------DSCVKADDITFIGLLSA 314
K + WN+M I G+ + AL + G ++ D + + +++ ++SA
Sbjct: 277 DKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISA 336
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEP 371
+ G ++ ++F +M + + + M+ R A++L M P
Sbjct: 337 YAQHGSIEVARQIFDQMPG-----KNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVP 391
Query: 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
E+ L ++L+AC DL +G ++ + + ++YA CG
Sbjct: 392 DEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 442
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 33/230 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D + +L A L +G +H + V + +L+ MY
Sbjct: 384 MRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGP 443
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+ A +F +MP K++++WN ++ A A G A+KL + M L D + ++S
Sbjct: 444 VVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSA 503
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ G + Y FD++ G +++ + + + + MV
Sbjct: 504 CSHSGLVDMGLYYFDRM------------------------GVIYR--VXREIEHYACMV 537
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
R L E ++L M +KPD + ++L AC G++E G +I
Sbjct: 538 DLLGRGGLLGEAIELIGRMP---MKPDVVVWGALLGACRIHGNVEIGKQI 584
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 266/457 (58%), Gaps = 32/457 (7%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ +++P L KA ++ G+ +H IK G G V++++A ++MYGS
Sbjct: 128 PNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSF--------- 178
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
G+++ A +++ DV FN MI GY + G++ +A+
Sbjct: 179 ----------------------GEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAK 216
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+F + K+V SWN ++ G +E+A E+F +M KN I+W+ M+ GY++ Y E
Sbjct: 217 ELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKE 276
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+++F+ M+ ++P ++SVL+ACANLG+L+ G IH Y +N + + TAL+D
Sbjct: 277 ALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVD 336
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MYAKCG ++ + +VF K + K+VF WNAMI GL +HG A++L +M + + IT
Sbjct: 337 MYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGIT 396
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+G+LSAC+H+G+V EG +F+ ME+ +G+ +EHYGC+VDLLGRA LL A E++ +M
Sbjct: 397 LLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSM 456
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P EP+ ++ GALL AC H D+E+G+RV K++ S G + +N+YA G+W++
Sbjct: 457 PMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNS-GRYALLSNIYARAGRWDDV 515
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R +M + G+ + G S+I+ +G H+F G H
Sbjct: 516 ANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSH 552
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 134/290 (46%), Gaps = 14/290 (4%)
Query: 143 SLILAYTNA--GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+L+ Y N + A ++F+ + NV +N ++ G L++ + + + +M +
Sbjct: 67 TLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHA 126
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+P+ T ++ AC + E G ++H + GL+ + H +A I MY G +E +
Sbjct: 127 RPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARR 186
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+ + DV C+NAMI G G AA +L M D V + ++ ++S + G+
Sbjct: 187 MLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNV----MVSGMAKCGM 242
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILG 377
++E ELF+ M++ ++ + M+D + A+E+ M E P + +L
Sbjct: 243 IEEARELFNEMKEKNEIS-----WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLS 297
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
++L+AC L+ G + V SN ++YA CG+ + A
Sbjct: 298 SVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMA 347
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + + +L A L + G +H + TAL+ MY
Sbjct: 284 MQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGR 343
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+D A+ VFEKM +K++ WN+M+ G+ + A++L M + I + G
Sbjct: 344 LDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLG 399
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 183/501 (36%), Positives = 277/501 (55%), Gaps = 42/501 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV ++++FP L K+ ++ G LH +K + +V T+++ MY S+ +D A
Sbjct: 126 GVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFA 185
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF+K +D +++ +++ + S G +D A +L D +P+KDV S+N MISGY + G+
Sbjct: 186 RLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFE 245
Query: 125 SARYIFDKVPAKDVV--------------------------SW-------------NSLI 145
A F ++ +V+ SW N+LI
Sbjct: 246 EAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALI 305
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y GE + A E+F + K+VI+WNTM+ GY LY E + LF+ M NVKP+ +
Sbjct: 306 DMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDV 365
Query: 206 TVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T +L ACA LG+L+ G +H Y N +SN T+LIDMYAKCG IE + VF
Sbjct: 366 TFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRS 425
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQE 323
+++ WNAM+ G A+HG+ AL L EM N + DDITF+G+LSAC+ AGLV
Sbjct: 426 MHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDL 485
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G + F M +D+G++ KL+HYGCM+DLL RA + A L++ M EP +I G+LLSAC
Sbjct: 486 GHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSAC 545
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
H +E G+ VA+ + + + G ++ +N+YA G+W++ R R +ND G+ K
Sbjct: 546 KAHGRVEFGEYVAERL-FQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVP 604
Query: 444 GSSVIEVNGSYHKFLAGGIGH 464
G + IE++G H+FL G H
Sbjct: 605 GCTSIEIDGDVHEFLVGDKFH 625
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/456 (28%), Positives = 210/456 (46%), Gaps = 51/456 (11%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM-----YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA- 85
+H IKTG V+VQ+ L+ G L F+ ++ + ++ WNS++
Sbjct: 47 IHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGY 106
Query: 86 -------------------------------FASC--GQMDHAMKLIDLMPLKDVTSFNI 112
F SC + H K + LK FN
Sbjct: 107 SLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNP 166
Query: 113 -----MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
+I YA +G++ AR +FDK +D VS+ +LI Y + G ++ A +F ++ VK
Sbjct: 167 HVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVK 226
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+V++WN M++GY++S + E + F EM+ NV P+ T+ VLSAC + S E G I
Sbjct: 227 DVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIG 286
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ DNG SN T ALIDMY KCG + + E+F + KDV WN MI G +
Sbjct: 287 SWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYE 346
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL L M S VK +D+TF+G+L AC+ G + G + + ++K+ + + +
Sbjct: 347 EALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSL 406
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
+D+ + ++ A + +M S A+LS +H E + + K +
Sbjct: 407 IDMYAKCGCIEAAERVFRSMHSRNLAS-WNAMLSGFAMHGHAERALALFSEMVNKGLFRP 465
Query: 408 DGELMMFANLYASCGQWEEAN----RWRNMMNDTGI 439
D + F + ++C Q + +R+M+ D GI
Sbjct: 466 DD--ITFVGVLSACTQAGLVDLGHQYFRSMIQDYGI 499
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 14/297 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE V + + ++L A G S +G + GF ++ + AL+ MY
Sbjct: 254 MQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGE 313
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
D A ++F+ + EKD+I+WN+M+ ++ + A+ L ++M +V ++ G
Sbjct: 314 TDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHA 373
Query: 118 -ARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
A +G + +++ + + + W SLI Y G +E A +F+ M +N+ +
Sbjct: 374 CACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS 433
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVY 229
WN M++G+ + LF EM G +PD +T VLSAC G ++ G +
Sbjct: 434 WNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSM 493
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS--QVKDVFCWNAMILGLALHG 284
D G++ +ID+ A+ E++ E+ K+ D W +++ HG
Sbjct: 494 IQDYGISPKLQHYGCMIDLLARAEKFEEA-EILMKNMEMEPDGAIWGSLLSACKAHG 549
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 173/497 (34%), Positives = 274/497 (55%), Gaps = 41/497 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ ++FP L KAA L +G +LHG IK +++ +L+ YGS D A +V
Sbjct: 171 PNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRV 230
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF----------------- 110
F MP KD+++WN+M++AFA G D A+ L M +KDV
Sbjct: 231 FTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDL 290
Query: 111 ----------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
N M+ Y + G I+ A+ +F+K+ KD+VSW +++ +
Sbjct: 291 EFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGH 350
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTV 207
G ++A +F M K WN +++ Y ++ + LF EM+ + + KPD +T+
Sbjct: 351 AKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTL 410
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
L A A LG+++ G IHVY + + N H T+L+DMYAKCG++ +++EVF+ +
Sbjct: 411 ICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVER 470
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
KDV+ W+AMI LA++G G AAL L M ++ +K + +TF +L AC+HAGLV EG +L
Sbjct: 471 KDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQL 530
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F +ME +G+ +++HY C+VD+ GRA LL++A IE MP PT ++ GALL AC H
Sbjct: 531 FEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHG 590
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++E+ + +A + + G ++ +N+YA G WE+ + R +M D+ + K S
Sbjct: 591 NVELAE-LAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSS 649
Query: 448 IEVNGSYHKFLAGGIGH 464
I+VNG H+FL G H
Sbjct: 650 IDVNGIVHEFLVGDNSH 666
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 168/381 (44%), Gaps = 48/381 (12%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYG--SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+H ++T Y + LL Y S C+ A VF ++P+ ++ WN+++ +AS
Sbjct: 91 IHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASS 150
Query: 90 GQMDHAMKLIDLMPLKDVT------SFNIMISGYARIGKIHSARYIFDKVP----AKDVV 139
+ LI L L + +F + +R+ +H + V + D+
Sbjct: 151 SDPTQSF-LIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLF 209
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
NSLI Y ++G + A +F M K+V++WN M+ + L + + LF EM+ +
Sbjct: 210 ILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKD 269
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
VKP+ +T+ SVLSACA LE G I Y +NG + A++DMY KCG I +
Sbjct: 270 VKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAK 329
Query: 260 EVFYKSQVKDVF-------------------------------CWNAMILGLALHGYGYA 288
++F K KD+ WNA+I +G
Sbjct: 330 DLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRV 389
Query: 289 ALKLLGEMNDSC-VKADDITFIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGC 346
AL L EM S K D++T I L A + G + G + ++K D + L
Sbjct: 390 ALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLA--TS 447
Query: 347 MVDLLGRARLLDRAIELIEAM 367
++D+ + L++A+E+ A+
Sbjct: 448 LLDMYAKCGNLNKAMEVFHAV 468
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 270/460 (58%), Gaps = 38/460 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ Y++P +LKA G+ +H +K G G ++ ++ ++MY S + +A ++
Sbjct: 136 PNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRI 195
Query: 68 FE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
+ K E D + WN+ MI GY R G++ +A
Sbjct: 196 LDDKGGEVDAVCWNA-------------------------------MIDGYLRFGEVEAA 224
Query: 127 RYIFDKVPAKDVVS-WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
R +F+ +P + ++S WN++I ++ G +E A E F +M ++ I+W+ M+ GY++ +
Sbjct: 225 RELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCF 284
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+E +++F +M+ ++P + SVLSACANLG+L+ G IH YA N + + T+L
Sbjct: 285 MEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSL 344
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
+DMYAKCG I+ + EVF K K+V WNAMI GLA+HG A+ L +M+ + ++
Sbjct: 345 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNE 401
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
ITF+G+L+AC+H GLVQ+G +F+ M K++GV ++EHYGC+VDLLGRA LL A +++
Sbjct: 402 ITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVS 461
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
++P EPT ++ GALL AC H ++E+G+RV K++ S G + +N+YA G+WE
Sbjct: 462 SIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNS-GRYTLLSNIYAKAGRWE 520
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEV-NGSYHKFLAGGIGH 464
E R +M + GI T G+S+I++ G HKF+ G H
Sbjct: 521 EVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSH 560
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 141/315 (44%), Gaps = 33/315 (10%)
Query: 143 SLILAYTNAG-----EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
SL+ +Y N E + +F + NV WN M+ + + + + L+ EM
Sbjct: 72 SLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVV 131
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ +P+ T +VL AC++ G + G ++H + +GL + H ++ I MYA G + +
Sbjct: 132 AHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVE 191
Query: 258 SLEVF-YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ + K D CWNAMI G G AA +L M D + + T+ ++S S
Sbjct: 192 ARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFS 248
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTE 373
G+V+ E F M++ ++ + M+D + A+E+ M E P +
Sbjct: 249 RCGMVEVAREFFDEMKERDEIS-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRK 303
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS-DGEL-MMFANLYASCGQ----WE-- 425
+L ++LSAC L+ G + AK N + DG L ++YA CG+ WE
Sbjct: 304 FVLPSVLSACANLGALDQGRWIHTY--AKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVF 361
Query: 426 ------EANRWRNMM 434
E + W M+
Sbjct: 362 EKMSNKEVSSWNAMI 376
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 123/302 (40%), Gaps = 57/302 (18%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ + + P +L A L + G +H + + T+L+ MY
Sbjct: 294 MQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGR 353
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL---IDLMP-------------- 103
ID A++VFEKM K++ +WN+M+ A G+ + A+ L +D+ P
Sbjct: 354 IDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLNACAH 413
Query: 104 ----LKDVTSFNIMISGY----------------ARIGKIHSARYIFDKVPAKDVVS-WN 142
K +T FN M Y R G + A + +P + + W
Sbjct: 414 GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWG 473
Query: 143 SLILAYTNAGEM---EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+L+ A G + E+ G++ ++ +N + + Y ++ + EV ++ MK
Sbjct: 474 ALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERG 533
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+K T+ ++ +LG E +H + +G S+P D+Y +++ L
Sbjct: 534 IK------TTPGTSIIDLGRGE----VHKFIIGDG--SHPQVK----DIYQMLDKVKERL 577
Query: 260 EV 261
++
Sbjct: 578 QM 579
>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 178/485 (36%), Positives = 277/485 (57%), Gaps = 38/485 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH---VYVQTALLKMYGS 57
MQ G+ ++ LKA ++ GL +HGQ K GF G +YV+TAL+ Y
Sbjct: 96 MQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCK 155
Query: 58 L-------RCIDD------------------------AFKVFEKMPEKDIIAWNSMLDAF 86
L + D+ A +VF+++P+KD+I+WNSM+ +
Sbjct: 156 LGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGY 215
Query: 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
A G M+ A+ L MP ++ S+N MISGY G I SAR FD +P ++ VSW ++I
Sbjct: 216 ARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMIS 275
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDY 204
Y+ G+++ A E+F ++ K+++ +N M+ Y ++ E + LF+ M NV+PD
Sbjct: 276 GYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDE 335
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+T+ SV+SAC+ LG L G I Y G+ + H TAL+D+YAKCGSI+++ E+F+
Sbjct: 336 MTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHG 395
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ KD+ + AMILG ++G A+KL EM D+ + + ITFIGLL+A +HAGLV+EG
Sbjct: 396 LRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEG 455
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
F+ M+K + + ++HYG MVDL GRA L A+ELI++MP +P + GALL AC
Sbjct: 456 YHCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACR 514
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
+H ++E G+ +A C + + G + +N+YAS +W++ R R + + G K G
Sbjct: 515 LHNNVEFGE-IAAQHCFELEPDTTGYCSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPG 573
Query: 445 SSVIE 449
S +E
Sbjct: 574 CSWME 578
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 107/263 (40%), Gaps = 24/263 (9%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+W + + + E L+ +M+ + P ++S L ACA + G IH
Sbjct: 71 FSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQ 130
Query: 230 ATDNGLASNP---HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
G + + TAL+D Y K G +E + ++F + ++V WN+M+ G G
Sbjct: 131 VQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDL 190
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A ++ E+ + D I++ ++S + AG +++ LF +M + R +
Sbjct: 191 VVAQRVFDEIP----QKDVISWNSMISGYARAGDMEKALSLFQQMPE-----RNFASWNA 241
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESIL---------GALLSACVIHQDLEIGDRV-- 395
M+ +D A +AMP S + G + SAC + + D +
Sbjct: 242 MISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLF 301
Query: 396 -AKMVCAKSNYLSDGELMMFANL 417
A + C N L +F N+
Sbjct: 302 NAMIACYAQNSRPKEALKLFNNM 324
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 171/446 (38%), Positives = 267/446 (59%), Gaps = 3/446 (0%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ++Y+FPLL+K + S G +H + +K GF ++V+ +L+ MY I DA
Sbjct: 155 VAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDAR 214
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
+FE D++ WNSM+D + G++ A +L + MP +D+ S+N MI+GY G + +
Sbjct: 215 AMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTA 274
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
A +F+K+P +D+VSWN +I Y ME A E+F M +NV++WN M+ Y+R + Y
Sbjct: 275 AEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDY 334
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LASNPHATTA 244
E + +FD+M G P+ T+ SVL+ACA+LG L+ G IH Y +N + + +TA
Sbjct: 335 DECLRMFDKM-MGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTA 393
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+ MYAKCG+++ + +VF K + V WN+MI+G +HG AL++ +M +
Sbjct: 394 LLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPN 453
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
D TFI +LSAC+H+G++ EG F M + + + K+EHYGCMVDLLGRA L+ ELI
Sbjct: 454 DATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELI 513
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
MP E ++ GALLSAC H + E+ + VAK + + G ++ +N+YA+ G+W
Sbjct: 514 RKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLI-ELEPRDIGPYLLLSNIYAAEGKW 572
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEV 450
++ R MM + G+ KT G S + +
Sbjct: 573 DDVEIVRKMMKERGLTKTTGFSWVHI 598
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 137/324 (42%), Gaps = 48/324 (14%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLR-SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
++ A +F+ + + NT++ Y+ + Y + +++M V P++ T ++
Sbjct: 108 VQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVK 167
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
C +GS+ G +IH G + +LI MY+ CG I + +F + D+
Sbjct: 168 VCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVT 227
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WN+MI G +G AA +L EM + D ++ +++ G + +LF++M
Sbjct: 228 WNSMIDGYVKNGEIGAARELFEEMPER----DLFSWNSMIAGYVGNGDMTAAEDLFNKMP 283
Query: 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---------------------- 370
R + + CM+D + + ++ A EL MP+
Sbjct: 284 -----FRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECL 338
Query: 371 -----------PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM---FAN 416
P E+ L ++L+AC L+ G + + K+N + + ++++
Sbjct: 339 RMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYI--KNNRVIEPDVLLSTALLT 396
Query: 417 LYASCGQWEEANRWRNMMNDTGIV 440
+YA CG + A + M++ +V
Sbjct: 397 MYAKCGAMDLARDVFDKMSNRSVV 420
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 273/477 (57%), Gaps = 41/477 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV ++Y+FP LLK+ + ++ G +HG +K G +V T+L+ MY + A
Sbjct: 127 GVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYA 186
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF K +D +++ +++ + G +D A +L + +P++D S+N MI+GYA+ G+
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246
Query: 125 SARYIFDKVPAKDVV--------------------------SW-------------NSLI 145
A F ++ +V SW N+LI
Sbjct: 247 EALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALI 306
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y+ G+++KA ++F+ + K++I+WN M+ GY Y E + LF +M+ NV+P+ +
Sbjct: 307 DMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLA-SNPHATTALIDMYAKCGSIEQSLEVFYK 264
T S+L ACA LG+L+ G IH Y L +N T+LIDMYAKCG+IE + +VF
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG 426
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ K + WNAMI GLA+HG+ AL+L +M D + DDITF+G+LSACSHAGLV+ G
Sbjct: 427 MKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
+ FS M +D+ ++ KL+HYGCM+DLLGRA L D A L++ M +P +I G+LL AC
Sbjct: 487 RQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACR 546
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
+H ++E+G+ AK + + G ++ +N+YA+ G+W++ R R +ND G+ K
Sbjct: 547 VHGNVELGEFAAKHLFELEPE-NPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 143/349 (40%), Gaps = 67/349 (19%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A + G + A +F+ + N WNTM+ G S + +D + M V+P+ T
Sbjct: 75 AISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYT 134
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+L +CA +G+ + G +IH + GL S+P T+LI+MYA+ G + + VF KS
Sbjct: 135 FPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194
Query: 267 -------------------------------VKDVFCWNAMILGLALHGYGYAALKLLGE 295
V+D WNAMI G A G AL E
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + V ++ T + +LSAC+ +G ++ G + S +E D G+ L ++D+ +
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIE-DHGLGSNLRLVNALIDMYSKCG 313
Query: 356 LLDRAIELIEAM----------------------------------PFEPTESILGALLS 381
LD+A +L E + EP + ++L
Sbjct: 314 DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILP 373
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM-FANLYASCGQWEEANR 429
AC L++G + + K L++ L ++YA CG E A +
Sbjct: 374 ACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/460 (36%), Positives = 263/460 (57%), Gaps = 33/460 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ GV + ++F +LKA G+ S G ++HG+ +K GFC V+ + AL+ MY
Sbjct: 117 MRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMY----- 171
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
CG + A L D MP +V ++N MI+G
Sbjct: 172 --------------------------LKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGC 205
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G AR +F ++P ++V SWN+++ Y+ G ++ A +F M ++V++W +M++ Y+
Sbjct: 206 GDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYV 265
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ E ++LF EM V D + +TS+LSACA +G+L+ G IH Y + L ++
Sbjct: 266 QNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVF 325
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TAL+DMYAKCG I+ + VF K++ WNAM+ GLA+HG+G+AAL+L +M +
Sbjct: 326 LDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTG 385
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V +DITF+ +LSACSH G V+EG + F++M+K+F +T K+EHYGCMVD+L R L++ A
Sbjct: 386 VGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEA 445
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
E+I MP EP I GALL+AC +H +G+ V + K G ++ +N++A+
Sbjct: 446 KEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYI-QKLVSEDGGCYVLLSNIFAA 504
Query: 421 CGQWEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLA 459
QW E + R MM G+ K G S IE++ H F A
Sbjct: 505 KSQWNEVEKTRKMMKQMGVEKKIPGYSSIELDSVVHDFFA 544
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 138/349 (39%), Gaps = 56/349 (16%)
Query: 83 LDAFASCGQMD-----HAMKLIDLMPLKDVTSFNIMISGYARIGK-IHSARYIFDKVPAK 136
L A SC + HA +LI +KD + YA + I A ++F +
Sbjct: 31 LSALQSCKSTEDLKKIHA-QLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYP 89
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKM-------------------------------- 164
D SW ++I + A EKA E + M
Sbjct: 90 DSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVH 149
Query: 165 --LVK-----NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
LVK +V T N ++ YL+ + LFDEM NV +T ++++ C
Sbjct: 150 GKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNV----VTWNTMITGCFGC 205
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
G E R+ + + S A++ Y+K G ++ + +F +DV W +MI
Sbjct: 206 GDTERARRLFGEMPERNVGS----WNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMI 261
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
+G AL+L EM + V AD I +LSAC+ G + G + + M++ +
Sbjct: 262 SAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRS-KL 320
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+ +VD+ + +D A + MP + S A+LS IH
Sbjct: 321 RNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCS-WNAMLSGLAIH 368
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 187/499 (37%), Positives = 274/499 (54%), Gaps = 40/499 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + ++ P +LKA G S+ +++HG IK G V+VQ AL+ +Y I A
Sbjct: 83 GLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCA 142
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL-------------------------- 98
K+F+ + +K +++WNSM+ +A G A L
Sbjct: 143 RKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQS 202
Query: 99 ------------IDLMPLK-DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
I++ +K D+ N ++ YA+ G +HSA+ IFD+ K+VVSW S+I
Sbjct: 203 RDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMI 262
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
AY G +E A ++F +M KNV++WN+M++ YLR Y E +DLF++M+ V PD
Sbjct: 263 SAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEA 322
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ S+L+AC+ LG L G +IH Y N A +LIDMYAKCG + +L++F +
Sbjct: 323 TLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEM 382
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
K++ WN +I LALHG G A+KL EM D+IT GLLSACSH+GLV G
Sbjct: 383 PGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGL 442
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F RM + V R++EHY CMVDLLGR LL AIELI MP +P + GALL AC I
Sbjct: 443 YYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRI 502
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H ++EIG ++ K + + S G ++ +N+Y +WE+ + R +M D GI K
Sbjct: 503 HGNVEIGKQILKQLLELEPH-SGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAI 561
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IE++G ++F+ H
Sbjct: 562 SSIEIDGCIYEFMVDDKRH 580
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 160/342 (46%), Gaps = 48/342 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G+ D ++F LL +G +H TG + V+ AL+ MY
Sbjct: 180 MREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGN 239
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +F++ EK++++W SM+ A+A G ++ A ++ D MP K+V S+N MIS Y R
Sbjct: 240 LHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLRE 299
Query: 121 GKIHSARYIFDK------VP---------------------------------AKDVVSW 141
G+ A +F+K VP A V +
Sbjct: 300 GQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLY 359
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSLI Y G + A ++F +M KN+++WN ++ +E + LF+EM+A
Sbjct: 360 NSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTL 419
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT---TALIDMYAKCGSIEQS 258
PD +T+T +LSAC++ G ++ G ++ + + P ++D+ + G + ++
Sbjct: 420 PDEITLTGLLSACSHSGLVDMG--LYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEA 477
Query: 259 LEVFYKSQVK-DVFCWNAMILGLALHG---YGYAALKLLGEM 296
+E+ + +K DV W A++ +HG G LK L E+
Sbjct: 478 IELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLEL 519
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 134/313 (42%), Gaps = 30/313 (9%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A +AG+++ A MF ++ N +N+++ GY S I+ V LF M + P+ T
Sbjct: 31 AVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFT 90
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ VL AC + +H A G+ S ALI +Y CG I + ++F
Sbjct: 91 LPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDIT 150
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K + WN+MI G A G A L +M + ++ D TF+ LLS CS +
Sbjct: 151 DKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQS-------- 202
Query: 327 LFSRMEKDFGVTRK----LEHYGCMVDLLGRARLLD--------RAIELIEAMPFEPTES 374
+D + R +E G +D++ R L+D + + I E
Sbjct: 203 ------RDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVV 256
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
+++SA H +E+ ++ + K N +S ++ + Y GQ+ EA N M
Sbjct: 257 SWTSMISAYAQHGSIEVARQIFDQMPGK-NVVSWNSMI---SCYLREGQYREALDLFNKM 312
Query: 435 NDTGIVKTAGSSV 447
++ +V + V
Sbjct: 313 RNSRVVPDEATLV 325
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 250/399 (62%), Gaps = 4/399 (1%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA+KVF +M +K++ AW +++ A +C M A +L DL P DV +N+++SGY +
Sbjct: 10 VADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIEL 69
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + +AR +FD++P DV+SWN+++ Y N GE+E ++F++M +NV +WN ++ GY+
Sbjct: 70 GDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYV 129
Query: 181 RSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
R+ L+ E ++ F M G V P+ TV +VLSAC+ LG LE G +HVYA G N
Sbjct: 130 RNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNL 189
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMYAKCG IE++L+VF VKD+ WN +I LA+H + AL L M +
Sbjct: 190 FVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRA 249
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ D +TF+G+LSAC+H GLV+ G F M D+ + ++EHYGCMVDLLGRA L+++
Sbjct: 250 GERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQ 309
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLY 418
A++++ MP EP I ALL AC ++++E+ + + +++ + N + G +M +N+Y
Sbjct: 310 AVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEPN--NPGNFVMLSNIY 367
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
G+ ++ R + M DTG K G SVI N S +F
Sbjct: 368 KDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEF 406
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 19/248 (7%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ++Y+ +L A L IG +H G+ G+++V AL+ MY I+ A
Sbjct: 150 VVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKAL 209
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMIS-----G 116
VF+ + KDII WN+++++ A A+ L + M D +F ++S G
Sbjct: 210 DVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMG 269
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTM 175
R G +H + D + + + ++ AG + +A ++ +KM ++ +V+ W +
Sbjct: 270 LVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAAL 329
Query: 176 VTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
+ G R +E+ +L E++ N +++ ++++ +LG + AR+ V
Sbjct: 330 L-GACRXYKNVEMAELALQRLIELEPNN-PGNFVMLSNIYK---DLGRSQDVARLKVAMR 384
Query: 232 DNGLASNP 239
D G P
Sbjct: 385 DTGFRKVP 392
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/470 (35%), Positives = 263/470 (55%), Gaps = 12/470 (2%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
+G+ D Y+ P LLKA + L +H +IKTG +++V+ L++ Y I+
Sbjct: 132 IGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEA 191
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-LKDVTSFNIMISGYARIGK 122
KVF++ P D+I+W +++ A++ G A+ M D + +++S +++G
Sbjct: 192 VEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQLGD 251
Query: 123 I--------HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
+ ++FD DV N+L+ Y G+ A ++F M VKN+++WN+
Sbjct: 252 FTLGKKILAYMDHHLFDV--HSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNS 309
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M++G L+ E + +F M+ +KPD +T+ VL++CANLG LE G +H Y N
Sbjct: 310 MISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNH 369
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
+ ++ + AL+DMYAKCGSI+Q+ VF + KDV+ + AMI+G A+HG AL +
Sbjct: 370 MKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFS 429
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
EM V+ D +T +G+LSACSHAGL++EG F M + + + + EHYGCMVDLLGRA
Sbjct: 430 EMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRA 489
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
L+ A MP P S+ G+LL AC IH +E+G+ V + + DG ++
Sbjct: 490 GLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPE-RDGAYILM 548
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+Y+S +W +A +WR M I KT G S IEV+G H+F G H
Sbjct: 549 SNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMVHEFRKGEKSH 598
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 40/279 (14%)
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
+ + L+ +M + PD T+ +L AC+ + +IH ++ GL+SN
Sbjct: 119 FTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNT 178
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+ YA G IE +VF + D+ W +I + GY A+ MN C AD
Sbjct: 179 LMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMN--CT-AD 235
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDF-----------------------GVTRKL 341
+T + +LSACS G G ++ + M+ + R+L
Sbjct: 236 RMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQL 295
Query: 342 EH---------YGCMVDLLGRARLLDRAIEL---IEAMPFEPTESILGALLSACVIHQDL 389
H + M+ L L A+ + ++ M +P L +L++C DL
Sbjct: 296 FHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDL 355
Query: 390 EIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEA 427
E+G V + K++ +DG + ++YA CG ++A
Sbjct: 356 ELGKWVHSYI-DKNHMKADGYVANALVDMYAKCGSIDQA 393
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ +G+ D+ + +L + L +G +H K YV AL+ MY
Sbjct: 330 MQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGS 389
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
ID AF VF+ M KD+ ++ +M+ FA G+ D A+ + MP V ++ + G
Sbjct: 390 IDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVG 445
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 280/476 (58%), Gaps = 39/476 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSS-SCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR---- 59
G+ D ++ P LL +AG L + G +H Q ++ GF V+V ALL MYG+LR
Sbjct: 89 GLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMYGALRDAAS 148
Query: 60 --------------------------C--IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
C ++ A +VF++MP ++ ++W++M+ +A+ G+
Sbjct: 149 MREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGE 208
Query: 92 MDHAMKLIDLMPL--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
+D A ++ D MP ++V ++N M++G+AR G + AR +FD++P +++VSWN+++ Y+
Sbjct: 209 LDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYS 268
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVT 208
+M+ A E+F M K+V++W M++GY ++ Y + ++LF M+ NV+P+ +T+
Sbjct: 269 VNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMV 328
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVFYKSQ 266
SVLSACANL +LE G +H + + + N ALIDMYAKCG + ++++F
Sbjct: 329 SVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLD 388
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K+V WNA+I LA++G ++ +M + K +DITF+G+L+ACSH GLV EG
Sbjct: 389 RKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRR 448
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F M GV +++HYGCMVD+LGRA LL+ A ELI +MP P + GALL AC +H
Sbjct: 449 CFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMH 508
Query: 387 QDLEIGDRVAKMVCAKS-NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
+ ++ +RV + + + N G ++ +++YA+ G+W + R ++ +GI K
Sbjct: 509 KRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/442 (38%), Positives = 265/442 (59%), Gaps = 3/442 (0%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ++Y+FPLL+K + S G +H + +K GF ++V+ +L+ MY I DA
Sbjct: 6 VAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDAR 65
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
+FE D++ WNSM+D + G++ A +L + MP +D+ S+N MI+GY G + +
Sbjct: 66 AMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTA 125
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
A +F+K+P +D+VSWN +I Y ME A E+F M +NV++WN M+ Y+R + Y
Sbjct: 126 AEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDY 185
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LASNPHATTA 244
E + +FD+M G P+ T+ SVL+ACA+LG L+ G IH Y +N + + +TA
Sbjct: 186 DECLRMFDKM-MGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTA 244
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+ MYAKCG+++ + +VF K + V WN+MI+G +HG AL++ +M +
Sbjct: 245 LLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPN 304
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
D TFI +LSAC+H+G++ EG F M + + + K+EHYGCMVDLLGRA L+ ELI
Sbjct: 305 DATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELI 364
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
MP E ++ GALLSAC H + E+ + VAK + + G ++ +N+YA+ G+W
Sbjct: 365 RKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLI-ELEPRDIGPYLLLSNIYAAEGKW 423
Query: 425 EEANRWRNMMNDTGIVKTAGSS 446
++ R MM + G+ KT G S
Sbjct: 424 DDVEIVRKMMKERGLTKTTGLS 445
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/497 (35%), Positives = 268/497 (53%), Gaps = 38/497 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY--------- 55
GV + ++F LL+A +L +HGQ ++ GF V+VQ AL+ +Y
Sbjct: 106 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGG 165
Query: 56 ---GSLRCIDD------------------------AFKVFEKMPEKDIIAWNSMLDAFAS 88
+ + D+ A FE MPE+++++WN+++ FA
Sbjct: 166 GVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFAR 225
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
G M A + D MP ++ S+N+MISGYA G + +AR +FD++ KDVVSW +++ AY
Sbjct: 226 MGDMVTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAY 285
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTV 207
G+++ E+F M VKN+++WN M+TGY + Y E + F M G +PD T+
Sbjct: 286 AKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATL 345
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
SV+SACA LGS+E I + + + ALIDM+AKCG + ++ +FYK +
Sbjct: 346 VSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMET 405
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+ + W MI G A +G AL + M V+ DD FI L+AC+H GL+QEG +
Sbjct: 406 RCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSI 465
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F+ M + + + ++EHYGCMVDLLGRA L AI IE+MP EP+ I LL +CV H
Sbjct: 466 FNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAHG 525
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
+ E+ + V+K + + S ++++ +N A G+W+ R M + GI K GSS
Sbjct: 526 NAELIEYVSKKITELEPFNSSYQVLV-SNCSALEGRWDGVIDARTSMRNWGIEKVPGSSS 584
Query: 448 IEVNGSYHKFLAGGIGH 464
I+V H+FLA H
Sbjct: 585 IQVGSEVHEFLAKDTRH 601
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 181/504 (35%), Positives = 274/504 (54%), Gaps = 45/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY----- 55
M GV + ++F LL+A +L +HGQ ++ GF V+VQ LL +Y
Sbjct: 96 MLAAGVPPNGFTFTFLLRACALLGFPRPCRCVHGQIVRWGFGSEVFVQNTLLDVYYRCGG 155
Query: 56 ----GSLRCIDD-------------------------AFKVFEKMPEKDIIAWNSMLDAF 86
+ R + D A ++FE MPE+++++WN+++ F
Sbjct: 156 PGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGF 215
Query: 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV-PAKDVVSWNSLI 145
A G M A + D MP ++ S+N+MISGYA G + +AR +FD++ KDVVSW +++
Sbjct: 216 ARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMV 275
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDY 204
AY G+++ A E+F M +KN+++WN M+TGY + Y E + F M G +PD
Sbjct: 276 SAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDE 335
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT----TALIDMYAKCGSIEQSLE 260
T+ SV+SACA LGS+E I + SN H T ALIDM+AKCG + ++
Sbjct: 336 ATLVSVVSACAQLGSVEYCNWISSFIRK----SNVHLTIALGNALIDMFAKCGDVGRAQS 391
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+FY+ + + + W MI G A +G AL + M V+ DD+ FI L+AC H GL
Sbjct: 392 IFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGGL 451
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
+QEG +F+ M + + + ++EHYGC+VDLLGRA L A+ IE+MP EP+ I LL
Sbjct: 452 LQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLL 511
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
S+CV H + E D V+K + + S ++++ +N A G+W+ R +M + GI
Sbjct: 512 SSCVAHGNAEFIDYVSKKITELEPFNSSYQVLV-SNSSALEGRWDGVIGARTIMRNWGIE 570
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K GSS I+V H+FLA H
Sbjct: 571 KVPGSSSIQVGSEVHEFLAKDTMH 594
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 108/296 (36%), Gaps = 69/296 (23%)
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
+ M A V P+ T T +L ACA LG +H G S L+D+Y +
Sbjct: 93 YTAMLAAGVPPNGFTFTFLLRACALLGFPRPCRCVHGQIVRWGFGSEVFVQNTLLDVYYR 152
Query: 252 C---GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV------- 301
C G + + +VF + +DV WN++I G A++L M + V
Sbjct: 153 CGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLV 212
Query: 302 --------------------KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+ I++ ++S + +G V+ +F RM++ + +
Sbjct: 213 AGFARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQK----KDV 268
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMP--------------------------------- 368
+ MV + LD A EL + MP
Sbjct: 269 VSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLE 328
Query: 369 --FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
F P E+ L +++SAC +E + ++ + + +L+ +++A CG
Sbjct: 329 GRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKCG 384
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 280/476 (58%), Gaps = 39/476 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSS-SCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR---- 59
G+ D ++ P LL +AG L + G +H Q ++ GF V+V ALL MYG+LR
Sbjct: 89 GLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMYGALRDAAS 148
Query: 60 --------------------------C--IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
C ++ A +VF++MP ++ ++W++M+ +A+ G+
Sbjct: 149 MREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGE 208
Query: 92 MDHAMKLIDLMPL--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
+D A ++ D MP ++V ++N M++G+AR G + AR +FD++P +++VSWN+++ Y+
Sbjct: 209 LDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYS 268
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVT 208
+M+ A E+F M K+V++W M++GY ++ Y + ++LF M+ NV+P+ +T+
Sbjct: 269 VNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMV 328
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVFYKSQ 266
SVLSACANL +LE G +H + + + N ALIDMYAKCG + ++++F
Sbjct: 329 SVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLD 388
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K+V WNA+I LA++G ++ +M + K +DITF+G+L+ACSH GLV EG
Sbjct: 389 RKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRR 448
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F M GV +++HYGCMVD+LGRA LL+ A ELI +MP P + GALL AC +H
Sbjct: 449 CFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMH 508
Query: 387 QDLEIGDRVAKMVCAKS-NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
+ ++ +RV + + + N G ++ +++YA+ G+W + R ++ +GI K
Sbjct: 509 KRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564
>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/426 (39%), Positives = 264/426 (61%), Gaps = 7/426 (1%)
Query: 29 GLMLHGQTIKTGF-CGH--VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA 85
G+ +HGQ K GF CG +YV+TAL+ Y L ++ A K+F++M E+++++WNSML
Sbjct: 3 GISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAG 62
Query: 86 FASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
+ G M+ A L MP ++ S+N MISG+ G I SAR FD +P K+ VSW ++I
Sbjct: 63 YLKAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMI 122
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPD 203
Y+ G+++ A E+F ++ K+++ +N M+ Y ++ E ++LF+ M NV+PD
Sbjct: 123 SGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPD 182
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T+ SV+SAC+ LG L G I Y G+ + H TAL+D+YAKCGSI+++ E+F+
Sbjct: 183 EMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFH 242
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ KD+ + AMILG ++G A+KL EM D+ + + ITFIGLL+A +HAGLV+E
Sbjct: 243 GLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEE 302
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G F+ M+K + + ++HYG MVDL GRA L A+ELI++MP +P + GALL AC
Sbjct: 303 GYRCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLAC 361
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
+H ++E G+ +A C + + G + +N+YAS +W++ R R + + G K
Sbjct: 362 RLHNNVEFGE-IAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIP 420
Query: 444 GSSVIE 449
G S +E
Sbjct: 421 GCSWME 426
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 17/221 (7%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
+ V D + ++ A L G + + G ++ TALL +Y ID
Sbjct: 177 VNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDK 236
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYAR 119
A+++F + +KD++A+ +M+ G+ A+KL D M + +F +++ Y
Sbjct: 237 AYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNH 296
Query: 120 IGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
G + F + ++V + ++ + AG +++A E+ K M ++ + W
Sbjct: 297 AGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGA 356
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGN---VKPDYLTVTSVLS 212
++ L +L+ V F E+ A + ++PD S+LS
Sbjct: 357 LL---LACRLHNNVE--FGEIAAQHCFELEPDTTGYRSLLS 392
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/495 (34%), Positives = 281/495 (56%), Gaps = 40/495 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ DN +F L KA + G + H Q +K GF +++++ +L++MYG
Sbjct: 148 MYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGE 207
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF---------- 110
+ A KVF+KM ++D+++WNS++ ++ C + + L +LM +VT+
Sbjct: 208 LGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILA 267
Query: 111 -----------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
N +I Y R G + AR +FD++ K++VSW
Sbjct: 268 CSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSW 327
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+++ Y AG++ A ++F +M ++NVI+W M++G ++ + + LF EM NVK
Sbjct: 328 NAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVK 387
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +TV+SVLSAC++LG L+TG +H Y + + S+ + ALIDMY KCG ++++LEV
Sbjct: 388 PDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEV 447
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F+ + KD W +MILGLA++G+ +L +M ++ +FIG+L AC+HAGLV
Sbjct: 448 FHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLV 507
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+G E F ME +G+ +++HYGC+VDLL R+ LDRA E I+ MP P + LLS
Sbjct: 508 DKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLS 567
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC +H++L + + +A + + + G ++ +N YA +W++A+R R++M + K
Sbjct: 568 ACKLHRNLVLAE-IATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQK 626
Query: 442 TAGSSVIEVNGSYHK 456
+ S IEV G+ +K
Sbjct: 627 PSSWSSIEVIGATNK 641
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 136/302 (45%), Gaps = 22/302 (7%)
Query: 136 KDVVSWNSLILAYT-NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF-D 193
K+ S +++I +Y + + KA F ++ ++ +N ++ G +S+ E + ++ D
Sbjct: 87 KNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSD 146
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
M + D LT + AC+ + + G HV G S +LI MY G
Sbjct: 147 LMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFG 206
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+ + +VF K +D+ WN++I G + L L M ++ V AD +T + ++
Sbjct: 207 ELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVIL 266
Query: 314 ACSHAGLVQEG-CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
ACS+ L ++G + + +D V + ++D+ GR L+D A + + M +
Sbjct: 267 ACSY--LCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNI 324
Query: 373 ES---------ILGALLSACVIHQDLEIGDRVAKMV----CAKSNYLSDG----ELMMFA 415
S G L++A + ++ I + ++ CA++N SD + MM A
Sbjct: 325 VSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDA 384
Query: 416 NL 417
N+
Sbjct: 385 NV 386
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 174/506 (34%), Positives = 274/506 (54%), Gaps = 40/506 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + ++FP +LKA +++H Q IK G H VQ A+L Y + R
Sbjct: 128 MVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRL 187
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTS- 109
I A +VF+ + ++ I++WNSM+ ++ G D A+ L D+ L + S
Sbjct: 188 ILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSA 247
Query: 110 ----------------------------FNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
N +I YA+ G + A+++FD++ KDVVSW
Sbjct: 248 SSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSW 307
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ AY N G +E A ++F M VKNV++WN+++ ++ Y E V+LF M V
Sbjct: 308 TSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVM 367
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ S+LS C+N G L G + H Y DN + + +LIDMYAKCG+++ ++++
Sbjct: 368 PDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDI 427
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F+ K+V WN +I LALHG+G A+++ M S + D+ITF GLLSACSH+GLV
Sbjct: 428 FFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLV 487
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
G F M F ++ +EHY CMVDLLGR L A+ LI+ MP +P + GALL
Sbjct: 488 DMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLG 547
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC I+ +LEI ++ K + + + G ++ +N+Y+ +W++ + R +M+D+GI K
Sbjct: 548 ACRIYGNLEIAKQIMKQLLELGRF-NSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKK 606
Query: 442 TAGSSVIEVNGSYHKFLAGGIGHLSN 467
S IE++G ++F+ H ++
Sbjct: 607 CRAISFIEIDGCCYQFMVDDKRHCAS 632
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 172/396 (43%), Gaps = 53/396 (13%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKM---YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
++H Q I G V LL + G LR A +F+++P+ + +N ++ ++
Sbjct: 57 LVHAQIILHGLAAQVVTLGKLLSLCVQEGDLR---YAHLLFDQIPQPNKFMYNHLIRGYS 113
Query: 88 SCGQMDHAMKLIDLM----PLKDVTSFNIMISG------YARIGKIHSARYIFDKVPAKD 137
+ ++ L M P+ + +F ++ Y +H+ P
Sbjct: 114 NSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHAC 173
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V N+++ AY + A ++F + + +++WN+M+ GY + E + LF EM
Sbjct: 174 V--QNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQ 231
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS--- 254
V+ D T+ S+LSA + +L+ G +H+Y G+ + T ALIDMYAKCG
Sbjct: 232 LGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQF 291
Query: 255 ----------------------------IEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+E ++++F VK+V WN++I L G
Sbjct: 292 AKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQY 351
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A++L M S V DD T + +LS CS+ G + G + + + +T +
Sbjct: 352 TEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNI-ITVSVTLCNS 410
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTES---ILGAL 379
++D+ + L AI++ MP + S I+GAL
Sbjct: 411 LIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGAL 446
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 242/433 (55%), Gaps = 32/433 (7%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
DA +F++MPE+D ++WN+M+ +A G++ A +L + P++DV ++ M+SGY + G
Sbjct: 222 DARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGM 281
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ AR +FD +P K+ VSWN++I Y M++A E+F+ M +NV +WNTM+TGY ++
Sbjct: 282 LDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQN 341
Query: 183 QLYIEVVDLFD-------------------------------EMKAGNVKPDYLTVTSVL 211
+ + FD EMK + + T TS L
Sbjct: 342 GDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTL 401
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
S CA + +LE G ++H GL S + AL+ MY KCG+I+ + VF + K+V
Sbjct: 402 STCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVV 461
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN MI G A HG+G AL L M + + DD+T +G+LSACSH GLV +G E F M
Sbjct: 462 SWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSM 521
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
+D+G+T +HY CM+DLLGRA LD A L++ MPFEP + GALL A IH + E+
Sbjct: 522 TQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTEL 581
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
G++ AKM+ S G ++ +NLYA+ G+W + R R M D G+ K G S +EV
Sbjct: 582 GEKAAKMIFEMEPDNS-GMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQ 640
Query: 452 GSYHKFLAGGIGH 464
H F G H
Sbjct: 641 NKIHTFTVGDSVH 653
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 147/285 (51%), Gaps = 8/285 (2%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A+L Y + +A ++F++MP K+ I+WN ML A+ G+++ A +L + ++
Sbjct: 146 NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELI 205
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N M+ GY + ++ AR IFD++P +D VSWN++I Y GE+ +A +F++ V++
Sbjct: 206 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 265
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW MV+GY+++ + E +FD M N ++ ++++ ++ +
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS----VSWNAIIAGYVQCKRMDQARELF- 320
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ N + +I YA+ G I Q+ F + +D W A+I G A GYG
Sbjct: 321 ---EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 377
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
AL L EM + + TF LS C+ ++ G ++ R+ K
Sbjct: 378 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 422
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 146/302 (48%), Gaps = 43/302 (14%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A ++FEKMP +D+++WN M+ + A L D MP +DV S+N M+SGYA+ G +
Sbjct: 99 ARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK--------------------- 162
A+ IFD++P K+ +SWN ++ AY G +E A +F+
Sbjct: 159 KEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRN 218
Query: 163 ----------KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+M ++ ++WNTM++GY ++ +E LF+E +V T T+++S
Sbjct: 219 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVS 274
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
G L+ R+ D N + A+I Y +C ++Q+ E+F ++V
Sbjct: 275 GYVQNGMLDEARRVF----DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS 330
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WN MI G A +G A D + D I++ +++ + +G +E LF M+
Sbjct: 331 WNTMITGYAQNGDIAQARNFF----DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMK 386
Query: 333 KD 334
+D
Sbjct: 387 RD 388
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 145/302 (48%), Gaps = 17/302 (5%)
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
+ DI+ WN + GQ D A++L + MP + S+N MISG K + AR +F+K
Sbjct: 46 DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P +D+VSWN +I + A +F +M ++V++WN M++GY ++ E ++F
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF 165
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
DEM N ++ +L+A G +E R+ D L S ++ Y K
Sbjct: 166 DEMPCKNS----ISWNGMLAAYVQNGRIEDARRLFESKADWELIS----WNCMMGGYVKR 217
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
+ + +F + +D WN MI G A +G A +L E S V+ D T+ ++
Sbjct: 218 NRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMV 273
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
S G++ E +F M + V+ + ++ + + +D+A EL EAMP +
Sbjct: 274 SGYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQNV 328
Query: 373 ES 374
S
Sbjct: 329 SS 330
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 112/252 (44%), Gaps = 17/252 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G + +F L +++ +G +HG+ +K G YV ALL MY
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 444
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
IDDA+ VFE + EK++++WN+M+ +A G A+ L + M L D + ++S
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 504
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + F + ++ NS +I AG ++ A + K M + +
Sbjct: 505 CSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 564
Query: 171 TWNTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
TW ++ + ++L + + EM+ N Y+ ++++ +A G + R+
Sbjct: 565 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGM-YVLLSNLYAASGRWGDV---GRMR 620
Query: 228 VYATDNGLASNP 239
+ D G+ P
Sbjct: 621 LRMRDRGVKKVP 632
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/495 (35%), Positives = 274/495 (55%), Gaps = 45/495 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E GV DNY++P +LK G + G +H +KTG YV +L+ MY L
Sbjct: 99 LRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGL 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--------------- 105
++ +VFE+MPE+D ++WN M+ + C + + A+ + M ++
Sbjct: 159 VEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLS 218
Query: 106 ----------------------DVTSF--NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
D+T N ++ Y + G + AR IFD + K+V W
Sbjct: 219 ACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCW 278
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ Y G++++A +F++ ++V+ W M+ GY++ + + + LF EM+ V+
Sbjct: 279 TSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVE 338
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD V ++L+ CA LG+LE G IH Y +N + + +TALI+MYAKCG IE+SLE+
Sbjct: 339 PDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEI 398
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + D W ++I GLA++G AL+L M +K DDITF+ +LSAC HAGLV
Sbjct: 399 FNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLV 458
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL---GA 378
+EG +LF M + + LEHYGC +DLLGRA LL A EL++ +P + E I+ GA
Sbjct: 459 EEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGA 518
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDT 437
LLSAC + ++++G+R+A + + SD L + A++YAS +WE+ + R+ M D
Sbjct: 519 LLSACRTYGNIDMGERLATALAKVKS--SDSSLHTLLASIYASADRWEDVRKVRSKMKDL 576
Query: 438 GIVKTAGSSVIEVNG 452
GI K G S IEV+G
Sbjct: 577 GIKKVPGYSAIEVDG 591
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 116/251 (46%), Gaps = 3/251 (1%)
Query: 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+++ +I + + F +D+++ ++ G+ A +F + ++ +N M+
Sbjct: 22 SQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIK 81
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
+++ + LF +++ V PD T VL +G + G +IH + GL
Sbjct: 82 AFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEF 141
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+P+ +L+DMYA+ G +E +VF + +D WN MI G A+ + M
Sbjct: 142 DPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQ 201
Query: 298 -DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+S K ++ T + LSAC+ ++ G E+ + + +T + + ++D+ +
Sbjct: 202 MESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGN--ALLDMYCKCGC 259
Query: 357 LDRAIELIEAM 367
+ A E+ +AM
Sbjct: 260 VSVAREIFDAM 270
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 44/255 (17%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI--DMYAKCGSIEQSLEVFY 263
T S+L +C ++ L+ + H++ GL + L+ M + G + +F
Sbjct: 10 TYISLLKSCKSMSQLKQ-IQAHIFCF--GLQQDRDILNKLMAFSMDSSLGDFNYANRIFN 66
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+F +N MI G +A+ L ++ + V D+ T+ +L G V+E
Sbjct: 67 HIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVRE 126
Query: 324 G------------------CELFSRMEKDFGVT------------RKLEHYGCMVDLLGR 353
G C M + G+ R + M+ R
Sbjct: 127 GEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVR 186
Query: 354 ARLLDRAIELIEAMPFE----PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
+ + A+++ M E P E+ + + LSAC + ++LE+G + + +N L
Sbjct: 187 CKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYI---ANELDLT 243
Query: 410 ELMMFA--NLYASCG 422
+M A ++Y CG
Sbjct: 244 PIMGNALLDMYCKCG 258
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 242/433 (55%), Gaps = 32/433 (7%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
DA +F++MPE+D ++WN+M+ +A G++ A +L + P++DV ++ M+SGY + G
Sbjct: 141 DARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGM 200
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ AR +FD +P K+ VSWN++I Y M++A E+F+ M +NV +WNTM+TGY ++
Sbjct: 201 LDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQN 260
Query: 183 QLYIEVVDLFD-------------------------------EMKAGNVKPDYLTVTSVL 211
+ + FD EMK + + T TS L
Sbjct: 261 GDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTL 320
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
S CA + +LE G ++H GL S + AL+ MY KCG+I+ + VF + K+V
Sbjct: 321 STCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVV 380
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN MI G A HG+G AL L M + + DD+T +G+LSACSH GLV +G E F M
Sbjct: 381 SWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSM 440
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
+D+G+T +HY CM+DLLGRA LD A L++ MPFEP + GALL A IH + E+
Sbjct: 441 TQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTEL 500
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
G++ AKM+ S G ++ +NLYA+ G+W + R R M D G+ K G S +EV
Sbjct: 501 GEKAAKMIFEMEPDNS-GMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQ 559
Query: 452 GSYHKFLAGGIGH 464
H F G H
Sbjct: 560 NKIHTFTVGDSVH 572
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 147/285 (51%), Gaps = 8/285 (2%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A+L Y + +A ++F++MP K+ I+WN ML A+ G+++ A +L + ++
Sbjct: 65 NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELI 124
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N M+ GY + ++ AR IFD++P +D VSWN++I Y GE+ +A +F++ V++
Sbjct: 125 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 184
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW MV+GY+++ + E +FD M N ++ ++++ ++ +
Sbjct: 185 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS----VSWNAIIAGYVQCKRMDQARELF- 239
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ N + +I YA+ G I Q+ F + +D W A+I G A GYG
Sbjct: 240 ---EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 296
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
AL L EM + + TF LS C+ ++ G ++ R+ K
Sbjct: 297 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 341
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 144/276 (52%), Gaps = 12/276 (4%)
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
R + A +F++MPE+D+++WN+ML +A G + A ++ D MP K+ S+N M++ Y
Sbjct: 44 RNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYV 103
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ G+I AR +F+ +++SWN ++ Y + A +F +M ++ ++WNTM++G
Sbjct: 104 QNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISG 163
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y ++ +E LF+E +V T T+++S G L+ R+ D N
Sbjct: 164 YAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVF----DGMPEKN 215
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+ A+I Y +C ++Q+ E+F ++V WN MI G A +G A D
Sbjct: 216 SVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFF----D 271
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+ D I++ +++ + +G +E LF M++D
Sbjct: 272 RMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRD 307
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 112/252 (44%), Gaps = 17/252 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G + +F L +++ +G +HG+ +K G YV ALL MY
Sbjct: 304 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 363
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
IDDA+ VFE + EK++++WN+M+ +A G A+ L + M L D + ++S
Sbjct: 364 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 423
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + F + ++ NS +I AG ++ A + K M + +
Sbjct: 424 CSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 483
Query: 171 TWNTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
TW ++ + ++L + + EM+ N Y+ ++++ +A G + R+
Sbjct: 484 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGM-YVLLSNLYAASGRWGDV---GRMR 539
Query: 228 VYATDNGLASNP 239
+ D G+ P
Sbjct: 540 LRMRDRGVKKVP 551
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 171/468 (36%), Positives = 276/468 (58%), Gaps = 11/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E V D ++F +LKA + + G +H +K+GF + +V+ L++MY +
Sbjct: 112 MHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQ 171
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-DLMPLK----DVTSFNIMIS 115
I A VF+ MPE+ I+AWNSML + G D +KL ++ L+ DVT +++++
Sbjct: 172 IGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMA 231
Query: 116 ----GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
IG++ YI K ++ SLI Y G+++ A ++F +M ++V+
Sbjct: 232 CGRLANLEIGEL-IGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVA 290
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W+ M++GY ++ E ++LF EM+ GNV P+ +T+ SVL +CA LG+ ETG +H Y
Sbjct: 291 WSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIK 350
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ T LID YAKCG I++S+EVF + K+VF W A+I GLA +G G AL+
Sbjct: 351 KKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALE 410
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
M ++ VK +D+TFIG+LSACSHA LV +G LF+ M +DF + ++EHYGCMVD+L
Sbjct: 411 FFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDIL 470
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GRA L+ A + I+ MPF P + LL++C H+++E+ ++ + + + G+
Sbjct: 471 GRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHI-TRLEPAHSGDY 529
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
++ +N YA G+ E+A R R+++ + I K G S+IE++G H+F +
Sbjct: 530 ILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFS 577
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 161/319 (50%), Gaps = 11/319 (3%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
ID A +F + + + A+N M+ A D+A+ L M K V +F+ ++
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+R+ + + + S N+LI Y N G++ A +F M ++++ W
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAW 190
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N+M++GY ++ L+ EVV LF ++ ++ D +T+ SVL AC L +LE G I Y
Sbjct: 191 NSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVS 250
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
GL N TT+LIDMYAKCG ++ + ++F + +DV W+AMI G A AL L
Sbjct: 251 KGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNL 310
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL-FSRMEKDFGVTRKLEHYGCMVDLL 351
EM V +++T + +L +C+ G + G + F +K +T L ++D
Sbjct: 311 FHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQ--LIDFY 368
Query: 352 GRARLLDRAIELIEAMPFE 370
+ +DR++E+ + M F+
Sbjct: 369 AKCGYIDRSVEVFKEMSFK 387
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 5/242 (2%)
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
R + D + + V+ +L+L T ++ A +F + +N M+ G +
Sbjct: 47 TRRLLDPIITEAVLESAALLLPDT----IDYALSIFNHIDKPESSAYNVMIRGLAFKRSP 102
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ LF +M +V+ D T +SVL AC+ + +L G ++H +G SN L
Sbjct: 103 DNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTL 162
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
I MYA CG I + VF + + WN+M+ G +G +KL ++ + ++ DD
Sbjct: 163 IQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDD 222
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+T I +L AC ++ G EL G+ R ++D+ + +D A +L +
Sbjct: 223 VTMISVLMACGRLANLEIG-ELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFD 281
Query: 366 AM 367
M
Sbjct: 282 EM 283
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 166/447 (37%), Positives = 256/447 (57%), Gaps = 34/447 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D +FP +L+A + +S G +H +K G +V+ AL+ M+
Sbjct: 109 GVRPDKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMH--------- 159
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
A+CG + A L D +D +++ MISG+AR G I
Sbjct: 160 ----------------------ATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIG 197
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+AR +FD+ P KD+VSWN +I AY G+M A E+F ++V++WN M++GY+R
Sbjct: 198 AARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGS 257
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT-- 242
+ + ++LF++M+A KPD +T+ S+LSACA+ G ++ G R+H + + P
Sbjct: 258 HKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLG 317
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
ALIDMYAKCGS+ +LEVF+ Q K+V WN++I GLALHG+ A+ + +M VK
Sbjct: 318 NALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVK 377
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
D+ITF+ +L ACSH G+V +G E F+ M++ + + ++HYGCMVD+L RA LL A E
Sbjct: 378 PDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFE 437
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
I M EP I LL AC IH +LE+ + A K+ + G+ ++ +N+YAS G
Sbjct: 438 FIGTMKIEPNPVIWRTLLGACRIHGELELAEH-ANQELLKARSDASGDFVLLSNIYASVG 496
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIE 449
+W + R +M+D+G+ K AG +V++
Sbjct: 497 EWLGSENMRKLMDDSGVNKEAGCAVVD 523
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 143/326 (43%), Gaps = 40/326 (12%)
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
R G H AR +FD++P D +N+LI ++ A ++ +M +
Sbjct: 55 RGGTAH-ARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGC------- 106
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
G V+PD T VL ACA +G+ ETGA++H + G S+
Sbjct: 107 ------------------GGGVRPDKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESD 148
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
ALI M+A CG + + +F +D W+AMI G A G AA +L E
Sbjct: 149 AFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE--- 205
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
S VK D +++ +++A + G + ELF D R + + M+ R
Sbjct: 206 SPVK-DLVSWNVMITAYAKLGDMAPARELF-----DGAPDRDVVSWNAMISGYVRCGSHK 259
Query: 359 RAIELIE---AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
+A+EL E AM +P + +LLSAC D++ G R+ + + + + + ++ A
Sbjct: 260 QAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNA 319
Query: 416 --NLYASCGQWEEANRWRNMMNDTGI 439
++YA CG A +M D +
Sbjct: 320 LIDMYAKCGSMTSALEVFWLMQDKNV 345
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/441 (38%), Positives = 254/441 (57%), Gaps = 34/441 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G DNY++PLL KA LS +G + G + GF
Sbjct: 146 GTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGF----------------------- 182
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+ DI N+++ SCG +D A K+ D ++D+ S+N MI+GY G +
Sbjct: 183 --------DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYC--GNLE 232
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SAR +FD + K +VSW ++++ Y +G ++ A ++F +M K+V+ WN M+ GY+ +
Sbjct: 233 SARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANR 292
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E + LF+EM+A N+ PD +T+ S LSAC+ LG+L+ G IH Y + L+ N TA
Sbjct: 293 GKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTA 352
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LIDMYAKCG I ++++VF + ++ W A+I GLALHG + A+ EM D+ V D
Sbjct: 353 LIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPD 412
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
++TF+GLLSAC H GLV+EG + FS+M F ++ KL+HY CMVDLLGRA LL+ A ELI
Sbjct: 413 EVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELI 472
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
++MP E + GAL AC IH ++ +G+R A + + S G ++ AN+Y W
Sbjct: 473 KSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDS-GIYVLLANMYGEAEMW 531
Query: 425 EEANRWRNMMNDTGIVKTAGS 445
+EA + R +M G+ KT S
Sbjct: 532 KEAGKARKLMRQRGVEKTPDS 552
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 138/307 (44%), Gaps = 20/307 (6%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDE-MKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
N +WN + G+L S+ E V L+ ++ KPD T + ACA L + G+ I
Sbjct: 114 NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 173
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+ G S+ + A+I + CG ++ + ++F KS V+D+ WN+MI G G
Sbjct: 174 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYC--GNL 231
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
+A KL M + + +++ ++ + +GL+ +LF M + + +
Sbjct: 232 ESARKLFDSMTNKTM----VSWTTMVVGYAQSGLLDMAWKLFDEMPD-----KDVVPWNA 282
Query: 347 MVDLLGRARLLDRAIEL---IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
M+ A A+ L ++AM P E + + LSAC L++G + +
Sbjct: 283 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHE 342
Query: 404 NYLSDGELMMFANLYASCGQWEEANR-WRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
L+ ++YA CG+ +A + ++ + + TA S + ++G+ H G I
Sbjct: 343 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAH----GAI 398
Query: 463 GHLSNLL 469
+ S ++
Sbjct: 399 AYFSEMI 405
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 10/185 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + ++ D + L A L + +G+ +H K +V + TAL+ MY
Sbjct: 303 MQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGK 362
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
I A +VF+++P ++ + W +++ A G A+ ++ID + D +F ++S
Sbjct: 363 ITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSA 422
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + R F ++ +K +S ++ ++ AG +E+A E+ K M ++ + +
Sbjct: 423 CCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAV 482
Query: 171 TWNTM 175
W +
Sbjct: 483 VWGAL 487
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/446 (34%), Positives = 258/446 (57%), Gaps = 37/446 (8%)
Query: 47 VQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSML----------------------- 83
+ T+L+ MY + D+ KVF+ MPE++ + WN+M+
Sbjct: 2 IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRT 61
Query: 84 --------DAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYARIGKIHSARYIFDKV 133
D FA G + A + D +P L++V ++ +M+ GYAR ++ +AR +F+ +
Sbjct: 62 AVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGM 121
Query: 134 PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD 193
P ++ +W+S+I Y G +++A +F ++ V+N++ WN++++GY ++ E ++ F
Sbjct: 122 PQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFG 181
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
+M+A +PD +T+ SVLSAC+ LG L+ G +IH G+ N L+DMYAKCG
Sbjct: 182 KMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCG 241
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+ + +F ++ CWN+MI G A+HG AL+ G M DS D+ITF+ +LS
Sbjct: 242 DLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLS 301
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
AC+H G V G E+FSRMEK +G+T ++HYGC++DLLGRA + A +LI+ MP +P +
Sbjct: 302 ACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPND 360
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS---DGELMMFANLYASCGQWEEANRW 430
+ GALL AC +H D+E+ DRV + + + +S D ++ +N+YA+ +WE+A +
Sbjct: 361 VVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKM 420
Query: 431 RNMMNDTGIVKTAGSSVIEVNGSYHK 456
R M + G KT+G S I + H+
Sbjct: 421 RMEMANKGFQKTSGCSSIMPGNNTHE 446
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 127/280 (45%), Gaps = 40/280 (14%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V T ++ Y ++ A +VFE MP+++ AW+SM+ + G + A + D +P
Sbjct: 94 NVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIP 153
Query: 104 LKDVTSFNIMISGYAR----------IGKIHSARYIFDKVPAKDVVS------------- 140
++++ ++N +ISGYA+ GK+ + + D+V V+S
Sbjct: 154 VRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKK 213
Query: 141 ----------------WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
N L+ Y G++ A +F+ M +N WN+M++G+
Sbjct: 214 IHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQ 273
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E ++ F M+ + PD +T SVLSACA+ G + G I GL +
Sbjct: 274 SKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGC 333
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
LID+ + G I+++ ++ + VK + W A++ +H
Sbjct: 334 LIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVH 373
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 10/199 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D + +L A L G +H G + +V L+ MY
Sbjct: 183 MQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGD 242
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+ +A +FE M ++ WNSM+ FA GQ A++ M D +F ++S
Sbjct: 243 LANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSA 302
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVIT 171
A G +++ IF ++ + + + LI AG +++A ++ K+M VK N +
Sbjct: 303 CAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVV 362
Query: 172 WNTMVTGYLRSQLYIEVVD 190
W ++ G R L +E+ D
Sbjct: 363 WGALL-GACRVHLDMEMAD 380
>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/485 (36%), Positives = 274/485 (56%), Gaps = 38/485 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF-CGH--VYVQTALLKMYGS 57
MQ G+ ++ LKA ++ G+ +HGQ K GF CG +YV+TAL+ Y
Sbjct: 96 MQRWGLCPTTFALSSALKACARIAYRMGGISIHGQVQKFGFSCGGDGIYVETALVDFYCK 155
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
L ++ A K+F++M E+++++WNSML + G + A ++ D +P KDV S+N MISGY
Sbjct: 156 LGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGY 215
Query: 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
AR G + A +F ++P ++ SWN++I + G+++ A F M KN ++W TM++
Sbjct: 216 ARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMIS 275
Query: 178 GYLRSQLYIEVVDLFDEMKAG---------------------------------NVKPDY 204
GY + +LFD++ NV+PD
Sbjct: 276 GYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDE 335
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+T+ SV+SAC+ LG L G I Y G+ + H TAL+D+YAKCGSI+++ E+F+
Sbjct: 336 MTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHG 395
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ KD+ + AMILG ++G A+KL EM D+ + + ITFIGLL+A +HAGLV+EG
Sbjct: 396 LRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEG 455
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
F+ M+K + + ++HYG MVDL GRA L A+ELI++MP +P + GALL AC
Sbjct: 456 YRCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACR 514
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
+H ++E G+ +A C + + G + +N+YAS +W++ R R + + G K G
Sbjct: 515 LHNNVEFGE-IAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPG 573
Query: 445 SSVIE 449
S +E
Sbjct: 574 CSWME 578
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 24/263 (9%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+W + + + E L+ +M+ + P ++S L ACA + G IH
Sbjct: 71 FSWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQ 130
Query: 230 ATDNGLA---SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
G + + TAL+D Y K G +E + ++F + ++V WN+M+ G G
Sbjct: 131 VQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDL 190
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A ++ E+ + D I++ ++S + AG +++ LF +M + R +
Sbjct: 191 VVAQRVFDEIP----QKDVISWNSMISGYARAGDMEKASSLFQQMPE-----RNFASWNA 241
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESIL---------GALLSACVIHQDLEIGDRV-- 395
M+ +D A +AMP + S + G + SAC + + D +
Sbjct: 242 MISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLF 301
Query: 396 -AKMVCAKSNYLSDGELMMFANL 417
A + C N + L +F N+
Sbjct: 302 NAMIACYAQNSRPNEALNLFNNM 324
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 176/503 (34%), Positives = 274/503 (54%), Gaps = 40/503 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ +G D SFP +LKA +S+ G+ LHG K +V+T L+ MY +
Sbjct: 105 IRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGR 164
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM----ISG 116
I+ A VF++M ++D++ WN+M++ + G +D A KL + M +V ++ +S
Sbjct: 165 INYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSA 224
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNV--- 169
R G + R I+D + DV +L+ Y AG M+ A E F+KM V+N+
Sbjct: 225 CGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVS 284
Query: 170 ----------------------------ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+ W TM++ Y S E + +F+EM +K
Sbjct: 285 TAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIK 344
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +T+ SV+SAC NLG+L+ +H Y NGL S ALI+MYAKCG ++ + +V
Sbjct: 345 PDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDV 404
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K ++V W++MI A+HG +L L +M V+ +++TF+G+L CSH+GLV
Sbjct: 405 FEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLV 464
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+EG ++F+ M ++ +T K+EHYGCMVDL GRA LL A+E+IE+MP P I G+L+S
Sbjct: 465 EEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMS 524
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC +H +LE+G+ AK + K DG L++ +N+YA +W+ R +M + K
Sbjct: 525 ACRVHGELELGELAAKRIL-KLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFK 583
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
G S I++NG H+FL G H
Sbjct: 584 EKGLSRIDLNGKSHEFLIGDKRH 606
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 171/484 (35%), Positives = 278/484 (57%), Gaps = 34/484 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + +P+L+K+AG G+ H +K G +V+ A++ MY R
Sbjct: 21 MQGCGVRPDAFVYPILIKSAGTG-----GIGFHAHVLKLGHGSDAFVRNAVIDMYA--RK 73
Query: 61 IDD----------------AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
+ D A +F+ MPE+++I W +M+ +A ++ A + D MP
Sbjct: 74 VADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPE 133
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKV--PAKDVVSWNSLILAYTNAGEMEKAGEMFK 162
+ V S+N M+SGYA+ G A +FD++ ++ V+WN++I AY G+++ A ++F
Sbjct: 134 RSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFN 193
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLE 221
M +NV+TWN+M+ GY ++ ++LF EM A + PD +T+ SV+SAC +LG+LE
Sbjct: 194 TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALE 253
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G + + T+N + + A+I MY++CGS+E + VF + +DV +N +I G A
Sbjct: 254 LGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFA 313
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
HG+G A+ L+ M + ++ D +TFIG+L+ACSHAGL++EG ++F + KD +
Sbjct: 314 AHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI-KDPAI---- 368
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVC 400
+HY CMVDLLGR L+ A +E MP EP + G+LL+A IH+ +E+G+ A K+
Sbjct: 369 DHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFE 428
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ + + G ++ +N+YAS G+W++ R R M G+ KT G S +E G HKF+
Sbjct: 429 LEPD--NSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVA 486
Query: 461 GIGH 464
H
Sbjct: 487 DRSH 490
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 263/474 (55%), Gaps = 42/474 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF--KVFEKMPEKDIIAWNSMLDAFASC 89
+HGQ +KTG + LL S A+ VF+++ + WN+M+ +++
Sbjct: 37 IHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNS 96
Query: 90 GQMDHAMKLIDLM------------PL---------------------------KDVTSF 110
+ + A+ L M P ++ +
Sbjct: 97 KEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTT 156
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +++ Y++ G I SAR +FD+V +D VSWNS+I YT GE+E A E+F M +N+I
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNII 216
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +M++G + + E ++LF M+ +K D + + S L ACA+LG L+ G IH Y
Sbjct: 217 SWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYI 276
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ + +P LIDMYAKCG +E+++EVF K + K V W AMI G A+HG G AL
Sbjct: 277 KKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREAL 336
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ +M + V+ + +TF G+L+ACSHAGLV E LF ME+ G +EHYGCMVDL
Sbjct: 337 EWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDL 396
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA LL A ELIE MP +P +I GALL+AC IH +LE+G ++ K++ + + G
Sbjct: 397 LGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILI-QVDPGHGGR 455
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ A+++A+ G+W +A R R M + G+ K G SVI VNG+ H+FLAG H
Sbjct: 456 YIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESH 509
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 53/326 (16%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + Y+FP LLKA +S+S +H IK GF +Y +LL +Y I A
Sbjct: 114 VPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSAR 173
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
+F+++ ++D ++WNSM+D + CG+++ A ++ + MP +++ S+ MISG GK
Sbjct: 174 LLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKE 233
Query: 126 ARYIFDKVPAK----------------------DVVSWNS-----------------LIL 146
A +F ++ D W LI
Sbjct: 234 ALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLID 293
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G++E+A E+F+KM K V W M++GY E ++ F +M+ V+P+ +T
Sbjct: 294 MYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMT 353
Query: 207 VTSVLSACANLGSL-------ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
T +L+AC++ G + E+ RIH G + ++D+ + G ++++
Sbjct: 354 FTGILTACSHAGLVHEAKLLFESMERIH------GFKPSIEHYGCMVDLLGRAGLLKEAE 407
Query: 260 EVFYKSQVK-DVFCWNAMILGLALHG 284
E+ VK + W A++ +HG
Sbjct: 408 ELIENMPVKPNAAIWGALLNACHIHG 433
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 171/472 (36%), Positives = 263/472 (55%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE G D+ + +L A + S IG +HG +++ GF V V TAL+ MY
Sbjct: 267 MQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGS 326
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
+ A +F++M K +++WNSM+D + G AM++ M + V N+ + G
Sbjct: 327 VGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHA 386
Query: 118 -ARIGKIHSARYI---FDKVP-AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + R++ D++ DV NSLI Y+ ++ A E+F+ + K +++W
Sbjct: 387 CADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSW 446
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY ++ E +D F +M+ N+KPD T+ SV+ A A L L IH
Sbjct: 447 NAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIR 506
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L N TAL+DMYAKCG++ + ++F + V WNAMI G HG G AAL+L
Sbjct: 507 TCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALEL 566
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M +K +++TF+ +LSACSH+GLV+EG + F M+KD+G+ ++HYG MVDLLG
Sbjct: 567 FEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLG 626
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L+ A + I+ MP EP S+ GA+L AC IH+++E+G++ A + + G +
Sbjct: 627 RANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIF-DLDPDDGGYHV 685
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YA+ W++ R R M GI KT G SV+E+ H F +G H
Sbjct: 686 LLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSH 737
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 122/460 (26%), Positives = 194/460 (42%), Gaps = 113/460 (24%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV Y+F LLK G + G +H Q I GF +V+ T ++ MY R
Sbjct: 166 MRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRL 225
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASC----------------GQMDHAMKLIDLMP- 103
+++A+K+F++MPE+D++ WN+++ +A G+ ++ ++ ++P
Sbjct: 226 VEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPA 285
Query: 104 LKDVTSFNI----------------------MISGYARIGKIHSARYIFDKVPAKDVVSW 141
+ DV S I ++ Y++ G + +AR IFD++ K VVSW
Sbjct: 286 VADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSW 345
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NS+I Y G+ A E+F+KM+ + V N
Sbjct: 346 NSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTN---------------------------- 377
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
+TV L ACA+LG +E G +H L S+ +LI MY+KC ++ + E+
Sbjct: 378 ---VTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEI 434
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH---- 317
F Q K + WNAMILG A +G A+ +M +K D T + ++ A +
Sbjct: 435 FENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVL 494
Query: 318 ------AGLVQEGC-------------------------ELFSRMEKDFGVTRKLEHYGC 346
GLV C +LF M++ R + +
Sbjct: 495 PQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDE-----RHVTTWNA 549
Query: 347 MVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSAC 383
M+D G L A+EL E M E P E +LSAC
Sbjct: 550 MIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSAC 589
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 172/340 (50%), Gaps = 11/340 (3%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA- 95
IK G QT L+ ++ + +A +VF+ + +K +++ML +A +D A
Sbjct: 101 IKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAV 160
Query: 96 -----MKLIDLMPLKDVTSFNIMISGYA---RIGKIHSARYIFDKVPAKDVVSWNSLILA 147
M+ + P+ ++ + + G R GK + I + A +V + ++
Sbjct: 161 SFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGF-ASNVFAMTGVVNM 219
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y +E+A +MF +M ++++ WNT+++GY ++ ++L M+ +PD +T+
Sbjct: 220 YAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITI 279
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
S+L A A++GSL G IH Y+ G S + +TAL+DMY+KCGS+ + +F +
Sbjct: 280 VSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTG 339
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
K V WN+MI G +G AA+++ +M D V+ ++T +G L AC+ G V++G
Sbjct: 340 KTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-RF 398
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
++ + + ++ + + + +D A E+ E +
Sbjct: 399 VHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENL 438
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 262/397 (65%), Gaps = 3/397 (0%)
Query: 70 KMP-EKDIIAWNSMLDAFASCGQMDHAMKLI-DLMPLKDVTSFNIMISGYARIGKIHSAR 127
K P E + +WNS+LD + G++ ++ + D + DV S+N +I+GY + G + AR
Sbjct: 163 KFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEAR 222
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD++P +DVVSW +++ Y +AG + +A +F +M +N+++W+ ++ GY++ Y +
Sbjct: 223 RLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSK 282
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
++LF EM+ VK D + VT++LSACA LG+L+ G +H+Y +G+ + H +TALID
Sbjct: 283 ALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALID 342
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY+KCG I+ + +VF ++ K VF W++MI GLA+H +G A++L +M + ++ +IT
Sbjct: 343 MYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEIT 402
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+I +L+AC+H+GLV G ++F+RM ++ +++HYGC+VDLLGRA LL A ++E M
Sbjct: 403 YINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETM 462
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P + +I ALLSAC +H+++E+G++V +++ K +D ++F+N+YA+ +W+ +
Sbjct: 463 PVKADPAIWRALLSACKLHRNVELGEQVGRILI-KMEPQNDMNYVLFSNVYAAVNRWDIS 521
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R M G+ K G S IE+NG+ H+F++ H
Sbjct: 522 GKLRREMKVRGMQKNPGCSSIELNGAVHEFVSRDHSH 558
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D LL A L + G LH K G ++ TAL+ MY
Sbjct: 290 MQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGR 349
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMI- 114
ID A+KVF++ +K + W+SM+ A + A++L M ++T NI+
Sbjct: 350 IDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAA 409
Query: 115 ---SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
SG +G R + ++ P + + ++ AG + A + + M VK +
Sbjct: 410 CTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPA 469
Query: 171 TWNTMVTG 178
W +++
Sbjct: 470 IWRALLSA 477
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 263/474 (55%), Gaps = 42/474 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF--KVFEKMPEKDIIAWNSMLDAFASC 89
+HGQ +KTG + LL S A+ VF+++ + WN+M+ +++
Sbjct: 37 IHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNS 96
Query: 90 GQMDHAMKLIDLM------------PL---------------------------KDVTSF 110
+ + A+ L M P ++ +
Sbjct: 97 KEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTT 156
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +++ Y++ G I SAR +FD+V +D VSWNS+I YT GE+E A E+F M +N+I
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNII 216
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +M++G + + E ++LF M+ +K D + + S L ACA+LG L+ G IH Y
Sbjct: 217 SWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYI 276
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ + +P LIDMYAKCG +E+++EVF K + K V W AMI G A+HG G AL
Sbjct: 277 KKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREAL 336
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ +M + V+ + +TF G+L+ACSHAGLV E LF ME+ G +EHYGCMVDL
Sbjct: 337 EWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDL 396
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA LL A ELIE MP +P +I GALL+AC IH +LE+G ++ K++ + + G
Sbjct: 397 LGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILI-QVDPGHGGR 455
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ A+++A+ G+W +A R R M + G+ K G SVI VNG+ H+FLAG H
Sbjct: 456 YIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESH 509
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 53/326 (16%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + Y+FP LLKA +S+ +H IK GF +Y +LL +Y I A
Sbjct: 114 VPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSAR 173
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
+F+++ ++D ++WNSM+D + CG+++ A ++ + MP +++ S+ MISG GK
Sbjct: 174 LLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKE 233
Query: 126 ARYIFDKVPAK----------------------DVVSWNS-----------------LIL 146
A +F ++ D W LI
Sbjct: 234 ALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLID 293
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G++E+A E+F+KM K V W M++GY E ++ F +M+ V+P+ +T
Sbjct: 294 MYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMT 353
Query: 207 VTSVLSACANLGSL-------ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
T +L+AC++ G + E+ RIH G + ++D+ + G ++++
Sbjct: 354 FTGILTACSHAGLVHEAKLLFESMERIH------GFKPSIEHYGCMVDLLGRAGLLKEAE 407
Query: 260 EVFYKSQVK-DVFCWNAMILGLALHG 284
E+ VK + W A++ +HG
Sbjct: 408 ELIENMPVKPNAAIWGALLNACHIHG 433
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 171/497 (34%), Positives = 273/497 (54%), Gaps = 42/497 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
DNY++PLL K S S + G I+ GF ++V A++ + S + A K+
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKL 212
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------IDLMPLKDVTSF----------- 110
F++ +D+++WNS+++ + CG D A L +++MP +VT
Sbjct: 213 FDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMP-DEVTMIGVVSASAQLEN 271
Query: 111 -----------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
N ++ Y + I +A+ +F+ + K VVSW ++++
Sbjct: 272 LALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIG 331
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G +E A +F +M K+V+ WN ++ G+++++ E + LF EM+A +V PD +TV
Sbjct: 332 YAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITV 391
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+ LSAC+ LG+L+ G +H Y + L N TAL+DMYAKCG+I+++++VF +
Sbjct: 392 VNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
++ W A+I GLALHG +AA+ EM + D+ITFIG+LSAC H GLV +G +
Sbjct: 452 RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDY 511
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F +M +G++ KL+HY C+VDLLGRA L+ A ELI +MPFEP + GAL IH
Sbjct: 512 FYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHG 571
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++ +G+R A + + G ++ AN+Y WE+A + R MM + G+ KT G S
Sbjct: 572 NVHMGERAASKLLELDPH-DGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSS 630
Query: 448 IEVNGSYHKFLAGGIGH 464
IE+NG + F+ H
Sbjct: 631 IEMNGLVYDFIIRDKSH 647
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 147/326 (45%), Gaps = 43/326 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M EL V D + ++ A+ L + +G LH + G V + AL+ MY +
Sbjct: 247 MGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKN 306
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A +FE M +K +++W +M+ +A G ++ A++L + MP KDV +N +I G+ +
Sbjct: 307 IEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQA 366
Query: 121 GKIHSARYIF----------DKVP------------AKDVVSW----------------- 141
+ A +F DK+ A DV W
Sbjct: 367 KRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALG 426
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+L+ Y G ++KA ++F++M +N +TW ++ G + F EM + +
Sbjct: 427 TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV 486
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVY--ATDNGLASNPHATTALIDMYAKCGSIEQSL 259
PD +T VLSAC + G ++ G R + Y + G++ + L+D+ + G +E++
Sbjct: 487 PDEITFIGVLSACCHGGLVDQG-RDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAE 545
Query: 260 EVFYKSQVK-DVFCWNAMILGLALHG 284
E+ + D W A+ G +HG
Sbjct: 546 ELIRSMPFEPDAVVWGALFFGSRIHG 571
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 2/201 (0%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARI 226
NV +WN + GY+ S+ I V L+ M + G+ PD T + CA T I
Sbjct: 118 NVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+ G S+ A+I + CG + + ++F +S V+D+ WN++I G G
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLA 237
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A L +M + V D++T IG++SA + + G +L +E + G+ +
Sbjct: 238 DEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIE-EMGLNLTVPLANA 296
Query: 347 MVDLLGRARLLDRAIELIEAM 367
++D+ + + ++ A L E M
Sbjct: 297 LMDMYIKCKNIEAAKILFENM 317
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 171/497 (34%), Positives = 273/497 (54%), Gaps = 42/497 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
DNY++PLL K S S + G I+ GF ++V A++ + S + A K+
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKL 212
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------IDLMPLKDVTSF----------- 110
F++ +D+++WNS+++ + CG D A L +++MP +VT
Sbjct: 213 FDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMP-DEVTMIGVVSASAQLEN 271
Query: 111 -----------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
N ++ Y + I +A+ +F+ + K VVSW ++++
Sbjct: 272 LALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIG 331
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G +E A +F +M K+V+ WN ++ G+++++ E + LF EM+A +V PD +TV
Sbjct: 332 YAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITV 391
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+ LSAC+ LG+L+ G +H Y + L N TAL+DMYAKCG+I+++++VF +
Sbjct: 392 VNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
++ W A+I GLALHG +AA+ EM + D+ITFIG+LSAC H GLV +G +
Sbjct: 452 RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDY 511
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F +M +G++ KL+HY C+VDLLGRA L+ A ELI +MPFEP + GAL IH
Sbjct: 512 FYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHG 571
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++ +G+R A + + G ++ AN+Y WE+A + R MM + G+ KT G S
Sbjct: 572 NVHMGERAASKLLELDPH-DGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSS 630
Query: 448 IEVNGSYHKFLAGGIGH 464
IE+NG + F+ H
Sbjct: 631 IEMNGLVYDFIIRDKSH 647
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 147/326 (45%), Gaps = 43/326 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M EL V D + ++ A+ L + +G LH + G V + AL+ MY +
Sbjct: 247 MGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKN 306
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A +FE M +K +++W +M+ +A G ++ A++L + MP KDV +N +I G+ +
Sbjct: 307 IEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQA 366
Query: 121 GKIHSARYIF----------DKVP------------AKDVVSW----------------- 141
+ A +F DK+ A DV W
Sbjct: 367 KRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALG 426
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+L+ Y G ++KA ++F++M +N +TW ++ G + F EM + +
Sbjct: 427 TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV 486
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVY--ATDNGLASNPHATTALIDMYAKCGSIEQSL 259
PD +T VLSAC + G ++ G R + Y + G++ + L+D+ + G +E++
Sbjct: 487 PDEITFIGVLSACCHGGLVDQG-RDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAE 545
Query: 260 EVFYKSQVK-DVFCWNAMILGLALHG 284
E+ + D W A+ G +HG
Sbjct: 546 ELIRSMPFEPDAVVWGALFFGSRIHG 571
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 2/201 (0%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARI 226
N +WN + GY+ S+ I V L+ M + G+ PD T + CA T I
Sbjct: 118 NXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+ G S+ A+I + CG + + ++F +S V+D+ WN++I G G
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLA 237
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A L +M + V D++T IG++SA + + G +L +E + G+ +
Sbjct: 238 DEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIE-EMGLNLTVPLANA 296
Query: 347 MVDLLGRARLLDRAIELIEAM 367
++D+ + + ++ A L E M
Sbjct: 297 LMDMYIKCKNIEAAKILFENM 317
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 152/393 (38%), Positives = 236/393 (60%), Gaps = 3/393 (0%)
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
++F+ M E+D+++WNSM+ G++ A KL D MP+KD S+N ++ GY + G+++
Sbjct: 2 RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNK 61
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
A +F+ +P ++VVSW++++ Y AG+ME A +F +M VKN+++W +V+GY L
Sbjct: 62 AFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLA 121
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ + F++M+ +KPD TV S+L++CA G L G R+H + + + AL
Sbjct: 122 KDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNAL 181
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
+DMYAKCG ++++L VF KD+ WN M+ GLA+HG+G AL+L M + D
Sbjct: 182 VDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDK 241
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+T + +L AC HAG V EG F+ ME+D+G+ +EHYGCMVDLLGR L A L++
Sbjct: 242 VTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQ 301
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD-GELMMFANLYASCGQW 424
+MP EP I G LL AC +H + + + V + C SD G + +N++AS G W
Sbjct: 302 SMPVEPNVVIWGTLLGACRMHNAVGLAEEV--LDCLFKLEPSDPGNYSLLSNIFASAGDW 359
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
R M + GI K +G+S IEV+ H+F
Sbjct: 360 SSVANVRLQMKNFGIQKPSGASSIEVDDEVHEF 392
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 111/261 (42%), Gaps = 19/261 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G+ D+ + +L + +G +H + + V V AL+ MY
Sbjct: 131 MEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQ 190
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A VF M +KD+++WN ML A G + A++L +M + D + ++
Sbjct: 191 VDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCA 250
Query: 117 YARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + F+ + + + ++ G +++A + + M V+ NV+
Sbjct: 251 CVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVV 310
Query: 171 TWNTMVTGYLRSQ----LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
W T++ G R L EV+D +++ + P ++ S + A A G + A +
Sbjct: 311 IWGTLL-GACRMHNAVGLAEEVLDCLFKLEPSD--PGNYSLLSNIFASA--GDWSSVANV 365
Query: 227 HVYATDNGLASNPHATTALID 247
+ + G+ A++ +D
Sbjct: 366 RLQMKNFGIQKPSGASSIEVD 386
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 264/461 (57%), Gaps = 33/461 (7%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
+ + +++P L KA + + G +HG +K G V++++A + MY S ++D
Sbjct: 126 IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLED 185
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A K+F E D++ W N MI GY + G +
Sbjct: 186 ARKMFYS-GESDVVCW-------------------------------NTMIDGYLKCGVL 213
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
+A+ +F ++P K++ SWN +I G + A ++F +M ++ I+W++MV GY+ +
Sbjct: 214 EAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAG 273
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
Y E +++F +M+ +P ++SVL+AC+N+G+++ G +H Y N + + T
Sbjct: 274 RYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGT 333
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
AL+DMYAKCG ++ EVF + + +++F WNAMI GLA+HG AL+L ++ + +K
Sbjct: 334 ALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKP 393
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+ IT +G+L+AC+HAG V +G +F M + +GV +LEHYGCMVDLLGR+ L A +L
Sbjct: 394 NGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDL 453
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I +MP +P ++ GALL AC IH + ++ +RV K++ S G ++ +N+YA G+
Sbjct: 454 INSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNS-GRYVLLSNIYAKVGR 512
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+++ ++ R +M D GI G S++++NG+ H+F G H
Sbjct: 513 FDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSH 553
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 20/292 (6%)
Query: 143 SLILAYTNA--GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+L+ Y N + A ++F + NV WN ++ G L + + + + M +
Sbjct: 70 ALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI-DA 128
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+P+ T ++ AC+ +++ G +IH + +G+ S+ H +A I MYA G +E + +
Sbjct: 129 RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARK 188
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+FY + DV CWN MI G G AA L +M + + ++ GL + G
Sbjct: 189 MFYSGE-SDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGL----AKGGN 243
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILG 377
+ + +LF M + R + MVD A A+E+ + M E P IL
Sbjct: 244 LGDARKLFDEMSE-----RDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ----WE 425
++L+AC ++ G V + S L ++YA CG+ WE
Sbjct: 299 SVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWE 350
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 168/465 (36%), Positives = 252/465 (54%), Gaps = 48/465 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E V D Y++P L K + +G LH +K G +V+ AL+ MY
Sbjct: 105 MLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMY----- 159
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ CG +D A + D+ DV ++N MISGY RI
Sbjct: 160 --------------------------SLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRI 193
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
KDV+SW +++ + N G+++ A + F KM ++ ++W M+ GYL
Sbjct: 194 --------------KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYL 239
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R Y E + LF EM+ +KPD T+ SVL+ACA LG+LE G I Y N + ++
Sbjct: 240 RLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTF 299
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
ALIDMY KCG++E +L +F +D F W AM++GLA++G G AL + +M +
Sbjct: 300 VGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKAS 359
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V D++T++G+LSAC+H G+V EG + F+ M G+ + HYGCMVDLLG+A L A
Sbjct: 360 VTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEA 419
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF-ANLYA 419
E+I+ MP +P + GALL AC IH+D E+ +R + + ++G + + N+YA
Sbjct: 420 HEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEP--NNGAVYVLQCNIYA 477
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+C +W++ R +M D GI KT G S+IE+NG H+F+AG H
Sbjct: 478 ACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSH 522
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 30/281 (10%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G+M A ++F + +V +WN M GY R V L+ EM NVKPD T +
Sbjct: 62 GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
+L+ G +H + GL SN A ALI+MY+ CG I+ + +F S DV
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WNAMI G +K D I++ +++ + G V + F +M
Sbjct: 182 TWNAMISGYNR------------------IKKDVISWTAIVTGFVNTGQVDAARKYFHKM 223
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVIHQD 388
+ V+ + M+D R A+ L M +P E + ++L+AC
Sbjct: 224 PERDHVS-----WTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGA 278
Query: 389 LEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCGQWEEA 427
LE+G+ + + N + + + A ++Y CG E A
Sbjct: 279 LELGEWIRTYI--DKNKVKNDTFVGNALIDMYFKCGNVEMA 317
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/499 (35%), Positives = 272/499 (54%), Gaps = 36/499 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G AD ++ L+LKA + G+ +HG K F +++Q L+ Y C
Sbjct: 118 MLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGC 177
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL---------------- 104
+ A +VF++MP++D +++NSM+D + G++D A + D +PL
Sbjct: 178 LVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYA 237
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
+D+ S+N MI G + G++ A+ +FD++P +D+VSW ++I
Sbjct: 238 QSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMID 297
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYL 205
Y G ++ A +F +M ++V+ +N M+ GY+++ +E + +F M++ GN D
Sbjct: 298 GYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNA 357
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ LSA A LG ++ G IH + + G + + ALIDMY+KCGSIE ++ VF
Sbjct: 358 TLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENI 417
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K V WNA+I GLA+HG G A L EM V+ DDITFIGLL+AC HAGLV+EG
Sbjct: 418 KEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGM 477
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + V KL+HYGCMVD+LGRA ++ A +E MPFEP + I +LLSAC
Sbjct: 478 MCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKT 537
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H+ +G VA+ + + + S ++ +N+YA G+W + + R MM + K G
Sbjct: 538 HESFNVGQPVAENL-MRLDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGC 596
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IE+ G + F H
Sbjct: 597 SWIELEGHVYAFFVQDKSH 615
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 153/351 (43%), Gaps = 53/351 (15%)
Query: 79 WNSMLDAFASCGQMDHAMKLIDLM--------------PLK------------------- 105
WN+++ ++ AM L+ LM LK
Sbjct: 95 WNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLK 154
Query: 106 ------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGE 159
D+ N +IS Y + G + A +FD++P +D VS+NS+I Y G ++ A
Sbjct: 155 KLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARV 214
Query: 160 MFK--KMLVKNVITWNTMVTGYLRSQLYIEVV-DLFDEMKAGNVKPDYLTVTSVLSACAN 216
+F + +N+I+WN+++ GY +S+ I V LF +M + D ++ S++ C
Sbjct: 215 VFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMP----ERDLISWNSMIDGCVK 270
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
G +E + + + S +ID YAK G ++ + +F + +DV +NAM
Sbjct: 271 CGRMEDAQGLFDRMPNRDIVS----WANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAM 326
Query: 277 ILGLALHGYGYAALKLL-GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
+ G +GY AL + G +D D+ T + LSA + G + +G + R ++
Sbjct: 327 MGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAI-HRFIEEI 385
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
G + ++D+ + ++ A+ + E + E + A++ IH
Sbjct: 386 GFSLDGRLGVALIDMYSKCGSIENAMMVFENIK-EKSVDHWNAIIGGLAIH 435
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK---CGSIEQSLEVFYKSQ 266
+L C L + +IH G N TT +I ++ IE + +F++
Sbjct: 21 LLKKCKRLSDIN---QIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFRHH 77
Query: 267 VKDV-----------FCWNAMILGLALHGY-GYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ F WNA+I + HG+ A+ L+ M ++ AD T +L A
Sbjct: 78 AFEFDEKEEEEEKDPFLWNAIIKTYS-HGHDPKEAMWLVSLMLENGAFADKFTLSLVLKA 136
Query: 315 CSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
CS GLV+EG ++ ++K +FG L++ C++ + L RA ++ + MP
Sbjct: 137 CSRVGLVKEGMQIHGLLKKLEFGSDLFLQN--CLISFYVKCGCLVRASQVFDRMP 189
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/495 (35%), Positives = 266/495 (53%), Gaps = 40/495 (8%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D +SFP LLKA +S+ GL +HG K GF ++QT L+ MY S R I DA +F
Sbjct: 120 DRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLF 179
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI---------------- 112
+KM D +AWN ++D + G D A++L + M D+ ++
Sbjct: 180 DKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLS 239
Query: 113 -----------------------MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
+I+ YA G + AR I+D + +K ++ +++ Y
Sbjct: 240 YGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYA 299
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G ++ A +F +M+ ++++ W+ M++GY S E + LFDEM PD +T+ S
Sbjct: 300 KLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLS 359
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
V+SAC+++G+L IH Y +G ALIDMYAKCG++ ++ EVF K+
Sbjct: 360 VISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKN 419
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V W++MI A+HG +A+KL M + ++ + +TFIG+L AC HAGLV+EG +LFS
Sbjct: 420 VISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFS 479
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M + G++ EHYGCMVDL RA L +AIELIE MPF P I G+L+SAC +H +
Sbjct: 480 SMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEA 539
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E+G+ AK + + DG L++ +N+YA +W + R M+ GI K SS IE
Sbjct: 540 ELGEFAAKRLL-ELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIE 598
Query: 450 VNGSYHKFLAGGIGH 464
+N H F+ H
Sbjct: 599 INNQVHMFMMADRYH 613
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 149/338 (44%), Gaps = 45/338 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ + D+ +L A G + G +H G+ ++QTAL+ MY +
Sbjct: 213 MRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGA 272
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A K+++ + K +I +ML +A G + A + D M +D+ ++ MISGYA
Sbjct: 273 MDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAES 332
Query: 121 GKIHSARYIFDKVPAKDVV----------------------SW----------------- 141
+ A +FD++ K V +W
Sbjct: 333 DQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVN 392
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y G + KA E+F+ M KNVI+W++M+ + + LF MK N++
Sbjct: 393 NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIE 452
Query: 202 PDYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T VL AC + G +E G ++ ++G++ ++D+Y + + +++E
Sbjct: 453 PNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIE 512
Query: 261 VFYKSQ-VKDVFCWNAMILGLALHGYG----YAALKLL 293
+ +V W +++ +HG +AA +LL
Sbjct: 513 LIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLL 550
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKP-DYLTVTSVLSACANLGSLETGARIHVYAT 231
N ++ RS + + L+ ++A N D + S+L A + + + G IH A+
Sbjct: 89 NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G +P T LI MYA C I + +F K D WN +I G +G+ AL+
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
L +M S +K D + +LSAC HAG + G
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYG 241
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 165/449 (36%), Positives = 261/449 (58%), Gaps = 40/449 (8%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D +FP +L+A + + G +H +K G +V+ AL+ M+ +L + A
Sbjct: 111 LRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAA 170
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
+F+ +D +AW++ MISG+AR G I +
Sbjct: 171 ALFDGEAREDAVAWSA-------------------------------MISGFARRGDIGA 199
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD+ P KD+VSWN +I AY G+M A E+F ++V++WN M++GY+R
Sbjct: 200 ARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSR 259
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ ++LF++M+A KPD +T+ S+LSACA+ G L+ G R+H + + G S TTAL
Sbjct: 260 KQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLS--GRFSRIGPTTAL 317
Query: 246 ----IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
IDMYAKCGS+ +LEVF+ Q K+V WN++I GLALHG+ ++ + +M V
Sbjct: 318 GNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNV 377
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
K D+ITF+ +L+ACSH G+V +G E FS M++ + + ++HYGCMVD+L R LL A
Sbjct: 378 KPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAF 437
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYAS 420
E I M EP I LL AC IH ++E+ + + ++ A+S+ + G+ ++ +N+YAS
Sbjct: 438 EFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSD--ASGDFVLLSNIYAS 495
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
G+W + R +M+D+G+ K AG +VI+
Sbjct: 496 VGEWPGSENMRKLMDDSGVNKEAGRAVID 524
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 148/344 (43%), Gaps = 42/344 (12%)
Query: 104 LKDVTSFNIMISGYA---RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEM 160
L D ++ +I A R G H AR +FD++P D +N+LI ++ A
Sbjct: 37 LSDSSALRELIFASAVGVRGGTAH-ARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDA--- 92
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
V+ Y R + DL ++PD T VL ACA +G+
Sbjct: 93 ---------------VSIYARMARHSADCDLM------TLRPDKRTFPFVLRACAAMGAG 131
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
ETGA++H + G S+ ALI M+A G + + +F +D W+AMI G
Sbjct: 132 ETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGF 191
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
A G AA +L E S VK D +++ +++A + G + ELF D R
Sbjct: 192 ARRGDIGAARELFDE---SPVK-DLVSWNVMITAYAKLGDMAPARELF-----DGAPDRD 242
Query: 341 LEHYGCMVDLLGRARLLDRAIELIE---AMPFEPTESILGALLSACVIHQDLEIGDRVAK 397
+ + M+ R +A+EL E AM +P + +LLSAC DL+ G R+
Sbjct: 243 VVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302
Query: 398 MVCAKSNYLSDGELMMFA--NLYASCGQWEEANRWRNMMNDTGI 439
+ + + + + A ++YA CG A +M D +
Sbjct: 303 FLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNV 346
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 177/466 (37%), Positives = 273/466 (58%), Gaps = 39/466 (8%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGL--MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
+ D Y+F +LKA C GL +L GQ + H +V YG
Sbjct: 124 NPDEYTFTSVLKA-------CAGLAQVLEGQKV------HCFVTK-----YGC------- 158
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
E ++ NS++D + G A KL D M ++DV S+N +ISGY G +
Sbjct: 159 --------ESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVD 210
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
AR +FD + K++VSW+++I Y G +E+A ++F+ M ++NV++WN M+ GY +++
Sbjct: 211 KARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEK 270
Query: 185 YIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
Y + ++LF +M+ G + P+ +T+ SVLSACA+LG+L+ G IH + N +
Sbjct: 271 YADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGN 330
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
AL DMYAKCG + ++ VF++ +DV W+ +I+GLA++GY A EM + ++
Sbjct: 331 ALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP 390
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+DI+F+GLL+AC+HAGLV +G E F M + +G+T K+EHYGC+VDLL RA LD+A L
Sbjct: 391 NDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESL 450
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCG 422
I +MP +P + GALL C I++D E G+RV +++ SN+ G L+ AN+YAS G
Sbjct: 451 INSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNH--SGSLVYLANVYASMG 508
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNL 468
+ ++A R M D +KT G S IE+N S ++F G H +L
Sbjct: 509 RLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSL 554
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 33/318 (10%)
Query: 125 SARYIFD---KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV-------KNVITWNT 174
S R +F+ ++ A + S + I+A G G + +L+ N+ +N
Sbjct: 36 SMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNA 95
Query: 175 MVTGYLRSQLYIEVVDLFDE--MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++ + + + + F+ + PD T TSVL ACA L + G ++H + T
Sbjct: 96 LLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTK 155
Query: 233 NGLASNPHATTALIDMYAK--CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G SN +L+D+Y K C I Q L F + V+DV WN +I G G A
Sbjct: 156 YGCESNLFVRNSLVDLYFKVGCNCIAQKL--FDEMVVRDVVSWNTLISGYCFSGMVDKAR 213
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ D ++ + +++ ++S + G ++E +LF M R + + M+
Sbjct: 214 MVF----DGMMEKNLVSWSTMISGYARVGNLEEARQLFENMP-----MRNVVSWNAMIAG 264
Query: 351 LGRARLLDRAIELIEAMPFE----PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
+ AIEL M E P + L ++LSAC L++G + + + + N +
Sbjct: 265 YAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFI--RRNKI 322
Query: 407 SDGELM--MFANLYASCG 422
G + A++YA CG
Sbjct: 323 EVGLFLGNALADMYAKCG 340
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 116/280 (41%), Gaps = 24/280 (8%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
E G+ ++ + +L A L + +G +H + +++ AL MY C+
Sbjct: 283 HEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCV 342
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIMISG 116
+A VF +M E+D+I+W+ ++ A G + A D + D+ SF +++
Sbjct: 343 LEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDI-SFMGLLTA 401
Query: 117 YARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + FD +P + + ++ + AG +++A + M ++ NVI
Sbjct: 402 CTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVI 461
Query: 171 TWNTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
W ++ G Y ++ VV E+ + + ++ + + A++G L+ A
Sbjct: 462 VWGALLGGCRIYKDAERGERVVWRILELDSNHSG----SLVYLANVYASMGRLDDAASCR 517
Query: 228 VYATDNGLASNP-----HATTALIDMYAKCGSIEQSLEVF 262
+ DN P ++ + + S QSL ++
Sbjct: 518 LRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIY 557
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 154/404 (38%), Positives = 239/404 (59%), Gaps = 2/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +A ++FE++P +D+ AW +M+ F G +D A ++ + MP K+ S+N MI+GY +
Sbjct: 262 LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQS 321
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+I AR +FD++P+++ SWN+++ Y G +++A +F +M ++ I+W M++GY
Sbjct: 322 QQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+S E + LF +MK + + LS+CA + +LE G ++H G +
Sbjct: 382 QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYI 441
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
A AL+ MY KCGSIE++ +VF KD+ WN MI G A HG+G AL L M
Sbjct: 442 AGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK-MT 500
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+K DD+T +G+LSACSH GLV +G E F+ M +++G+T +HY CM+DLLGRA LD A
Sbjct: 501 IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEA 560
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+ L+++MPF P + GALL A IH D E+G++ A+ V S G ++ +NLYA+
Sbjct: 561 LNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNS-GMYVLLSNLYAA 619
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+W E R+ M D G+ K G S +E+ H F G H
Sbjct: 620 SGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSH 663
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 189/413 (45%), Gaps = 82/413 (19%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y S D A KVFEKMP++D+I+WN ML + G + A L + MP KDV
Sbjct: 95 NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGE--------- 159
S+N M+SG+A+ G + AR IFD++ K+ +SWN L+ AY G +E A
Sbjct: 155 SWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWE 214
Query: 160 ----------------------MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
+F +M V++ I+WN M+TGY ++ L E LF+E+
Sbjct: 215 IVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI 274
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+V T+++S G L+ RI + N + A+I Y + IE+
Sbjct: 275 RDV----FAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQIEK 326
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ E+F + ++ WN M+ G A G A L EM + D I++ ++S +
Sbjct: 327 ARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEM----PQRDCISWAAMISGYAQ 382
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+G +E LF +M++D G+ L+R S L
Sbjct: 383 SGQSEEALHLFIKMKRDGGI-------------------LNR--------------SALA 409
Query: 378 ALLSACVIHQDLEIGDRV-AKMVCA--KSNYLSDGELMMFANLYASCGQWEEA 427
LS+C LE+G ++ ++V A ++ Y++ L+ +Y CG EEA
Sbjct: 410 CALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA---MYGKCGSIEEA 459
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 161/309 (52%), Gaps = 21/309 (6%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
+ A VF M + + +N+M+ + S + D A K+ + MP +D+ S+N+M+SGY + G
Sbjct: 77 ESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNG 136
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
+ +AR +F+++P KDVVSWN+++ + G +E+A ++F +MLVKN I+WN +++ Y++
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQ 196
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT--DNGLASNP 239
+ + LFD K D+ ++S +G R+ + D +
Sbjct: 197 NGRIEDARRLFDS------KMDW----EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDK 246
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ +I YA+ G + ++ +F + ++DVF W AM+ G +G A ++ EM +
Sbjct: 247 ISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK 306
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+++++ +++ + +++ ELF +M +R + MV + +D+
Sbjct: 307 ----NEVSWNAMIAGYVQSQQIEKARELFDQMP-----SRNTSSWNTMVTGYAQCGNIDQ 357
Query: 360 AIELIEAMP 368
A L + MP
Sbjct: 358 AKILFDEMP 366
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 145/302 (48%), Gaps = 17/302 (5%)
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
+ DI+ WN + A+ GQ + A+ + + M + ++N MISGY K AR +F+K
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P +D++SWN ++ Y G + A +F +M K+V++WN M++G+ ++ E +F
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
D+M N ++ +LSA G +E R+ D + S L+ Y +
Sbjct: 177 DQMLVKN----EISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS----WNCLMGGYVRK 228
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
++ + +F + V+D WN MI G A +G A +L E+ D + ++
Sbjct: 229 KRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PIRDVFAWTAMV 284
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
S G++ E +F M + V+ + M+ +++ +++A EL + MP T
Sbjct: 285 SGFVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNT 339
Query: 373 ES 374
S
Sbjct: 340 SS 341
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
+G LHG+ +K GF ALL MYG I++AF VFE + EKDI++WN+M+ +A
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYA 482
Query: 88 SCGQMDHAMKLIDLMPL----KDVT-------------------SFNIMISGY------- 117
G A+ L + M + DVT FN M Y
Sbjct: 483 RHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAK 542
Query: 118 ---------ARIGKIHSARYIFDKVP-AKDVVSWNSLILAYTNAGEM---EKAGEMFKKM 164
R G++ A + +P D +W +L+ A G+ EKA E +M
Sbjct: 543 HYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEM 602
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK--PDY 204
N + + Y S + EV ++ +M+ VK P Y
Sbjct: 603 EPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGY 644
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 173/498 (34%), Positives = 275/498 (55%), Gaps = 40/498 (8%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ DN+++PLLLK SSC+GL + G +K GF ++V A + M S + A+
Sbjct: 154 LKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAY 213
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG--------- 116
VF K +D++ WNSM+ G A+K+ M + V I + G
Sbjct: 214 DVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQ 273
Query: 117 ------------------------------YARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
Y + G++ +AR +FD + K +VSW +++L
Sbjct: 274 DLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVL 333
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G ++ A E+ K+ K+V+ WN +++G ++++ E + LF EM+ ++PD +T
Sbjct: 334 GYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVT 393
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ + LSAC+ LG+L+ G IH Y + L+ + TAL+DMYAKCG+I ++L+VF +
Sbjct: 394 MVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP 453
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
++ W A+I GLALHG AL +M + D+ITF+G+LSAC H GLV+EG +
Sbjct: 454 QRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRK 513
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
FS M F V+ KL+HY CMVDLLGRA L+ A EL++ MP ++LGAL AC ++
Sbjct: 514 YFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVY 573
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
+++IG+R A + + + G ++ A++Y+ W+EA R +MND G+ KT G S
Sbjct: 574 GNVQIGERTAFKL-LEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCS 632
Query: 447 VIEVNGSYHKFLAGGIGH 464
++E+NG H+F+ + H
Sbjct: 633 LVEINGIVHEFVVRDVSH 650
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 176/383 (45%), Gaps = 51/383 (13%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+ Q + TG + + + L+ + +D ++ ++ E ++ +WN+ + +
Sbjct: 76 IQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVES 135
Query: 90 GQMDHAMKLIDLMPL-----KDVTSFNIMISG----YAR---IGKI-HSARYIFDKVPAK 136
G ++ L M L D ++ +++ G Y+ +G + H ++ F+
Sbjct: 136 GDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFEC---- 191
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
D+ N+ I + GE+ A ++F K V++++TWN+M+TG ++ L IE + ++ EM+
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS-- 254
A V+P+ +T+ ++S+C+ + L G H Y ++GL T AL+DMY KCG
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311
Query: 255 -----------------------------IEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
++ + E+ YK K V WNA+I G
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
G AL L EM ++ D +T + LSACS G + G + +E+ ++ +
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERH-KLSIDVALGT 430
Query: 346 CMVDLLGRARLLDRAIELIEAMP 368
+VD+ + + RA+++ E +P
Sbjct: 431 ALVDMYAKCGNIARALQVFEEIP 453
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 9/173 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + D + L A L + +G+ +H + V + TAL+ MY
Sbjct: 382 MQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGN 441
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
I A +VFE++P+++ + W +++ A G A+ K+I + + D +F ++S
Sbjct: 442 IARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSA 501
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKM 164
G + R F ++ +K VS ++ ++ AG +E+A E+ K M
Sbjct: 502 CCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNM 554
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 175/511 (34%), Positives = 278/511 (54%), Gaps = 49/511 (9%)
Query: 1 MQELGVHADNYSFPLLL----KAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYG 56
M + GV D+++FP LL + G L+ G LH +K G ++YVQ AL+KMY
Sbjct: 125 MLKEGVTPDSHTFPFLLNGLKRDGGALAC---GKKLHCHVVKFGLGSNLYVQNALVKMYS 181
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSF- 110
+D A VF++ ++D+ +WN M+ + + + +++L+ +L+ VT
Sbjct: 182 LCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLL 241
Query: 111 ---------------------------------NIMISGYARIGKIHSARYIFDKVPAKD 137
N +++ YA G++ A IF + A+D
Sbjct: 242 VLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARD 301
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V+SW S++ Y G ++ A F +M V++ I+W M+ GYLR+ + E +++F EM++
Sbjct: 302 VISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQS 361
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ PD T+ SVL+ACA+LGSLE G I Y N + ++ ALIDMY KCG E+
Sbjct: 362 AGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEK 421
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +VF+ +D F W AM++GLA +G G A+K+ +M D ++ DDIT++G+LSAC+H
Sbjct: 422 AQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNH 481
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+G+V + + F++M D + L HYGCMVD+LGRA L+ A E++ MP P + G
Sbjct: 482 SGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWG 541
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMND 436
ALL A +H D + + AK + +G + + N+YA C +W++ R + D
Sbjct: 542 ALLGASRLHNDEPMAELAAKKILELEP--DNGAVYALLCNIYAGCKRWKDLREVRRKIVD 599
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
I KT G S+IEVNG H+F+AG HL +
Sbjct: 600 VAIKKTPGFSLIEVNGFAHEFVAGDKSHLQS 630
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 148/314 (47%), Gaps = 19/314 (6%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRC--IDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
LH Q+I G + Q L + S + A+K+F K+PE D++ WN+M+ ++
Sbjct: 53 LHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKV 112
Query: 90 GQMDHAMKLIDLMPLKDVT----SFNIMISGYARIG-------KIHSARYIFDKVPAKDV 138
++L M + VT +F +++G R G K+H F ++
Sbjct: 113 DCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGL--GSNL 170
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
N+L+ Y+ G M+ A +F + ++V +WN M++GY R + Y E ++L EM+
Sbjct: 171 YVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERN 230
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
V P +T+ VLSAC+ + + R+H Y ++ + AL++ YA CG ++ +
Sbjct: 231 LVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIA 290
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+ +F + +DV W +++ G G LKL D D I++ ++ A
Sbjct: 291 VRIFRSMKARDVISWTSIVKGYVERG----NLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 319 GLVQEGCELFSRME 332
G E E+F M+
Sbjct: 347 GCFNESLEIFREMQ 360
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 174/502 (34%), Positives = 265/502 (52%), Gaps = 43/502 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + Y+FP + K+ + + G +H +K G + +V T+L+ MY + +A
Sbjct: 123 GTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNA 182
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF+K +D +++ +++ +AS G +D A +L D +P++DV S+N MISGYA+ G++
Sbjct: 183 RLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVE 242
Query: 125 SARYIFDKVPAKDVV---------------------------SW-------------NSL 144
A F+++ V SW N L
Sbjct: 243 EAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGL 302
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I Y G++E+A +F+K+ KNV++WN M+ GY Y E + LF M N+ P+
Sbjct: 303 IDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPND 362
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T S+L ACANLG+L+ G +H Y N + + T+LIDMYAKCG + + +F
Sbjct: 363 VTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIF 422
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
K + WNAMI G A+HG+ AL L M DDITF+G+L+AC HAGL+
Sbjct: 423 DCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLS 482
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
G FS M +D+ V+ KL HYGCM+DL GRA L D A L++ M +P +I +LL A
Sbjct: 483 LGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGA 542
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C IH+ +E+ + VAK + + ++ +N+YA G+WE+ + R +ND + K
Sbjct: 543 CRIHRRIELAESVAKHLFELEPE-NPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKV 601
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
G S IEV+ H+FL G H
Sbjct: 602 PGCSSIEVDSVVHEFLVGDKVH 623
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 126/299 (42%), Gaps = 46/299 (15%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A + G++ A +FK + N + WN M+ G S+ ++ + M + +P+ T
Sbjct: 71 AVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYT 130
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
S+ +C + G ++H + GL N T+LI+MYA+ G + + VF KS
Sbjct: 131 FPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSS 190
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
++D + A+I G A G+ L E+ D D +++ ++S + +G V+E
Sbjct: 191 MRDAVSFTALITGYASKGF----LDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMA 246
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F M RA++ P S + ++LSAC
Sbjct: 247 FFEEMR--------------------RAKV-------------TPNVSTMLSVLSACAQS 273
Query: 387 -QDLEIGDRVAKMVCAK---SN-YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
L++G+ V + + SN L +G ++Y CG EEA+ + D +V
Sbjct: 274 GSSLQLGNWVRSWIEDRGLGSNIRLVNG----LIDMYVKCGDLEEASNLFEKIQDKNVV 328
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA--KCGSIEQSLEVFYKSQVK 268
L+ +N +L+T +IH GL + A + LI+ A G + +L +F +
Sbjct: 32 LTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNP 91
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+ WN MI GL+ + AL+ M S + ++ TF + +C+ EG ++
Sbjct: 92 NHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVH 151
Query: 329 SRMEK 333
+ + K
Sbjct: 152 AHVLK 156
>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
Length = 596
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 271/482 (56%), Gaps = 35/482 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ ++ L+A + G+ +H ++ K GF VYVQTAL+ +Y L
Sbjct: 115 MQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFSNCVYVQTALVDLYSKLGD 174
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A KVF+++ EK++++WNS+L G + A ++ D + KDV S+N MISGYA+I
Sbjct: 175 MNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKKDVISWNSMISGYAKI 234
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A +F ++P K+ SWN+LI Y N G+++ A F M +N ++W TM+ GY
Sbjct: 235 GDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGYS 294
Query: 181 R-------SQLYIEVVD------------------------LFDEM-KA-GNVKPDYLTV 207
+ S+L+ ++ LF EM KA N++PD +T+
Sbjct: 295 KCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTL 354
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
SV+SAC+ LG L + I Y D G + TAL+D+YAKCGS++++ E+F+
Sbjct: 355 ASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNK 414
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
KDV ++AMI G ++G A+KL M D+ + + TF GLL+AC+HAGLV+EG
Sbjct: 415 KDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYRF 474
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
FS M KD G+ +HY MVDLLGRA L A ELI++MP +P + GALL AC +H
Sbjct: 475 FSSM-KDHGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLACNVHN 533
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++E+G+ +A C + + AN+Y+S G+W++ R R + + + K +G S
Sbjct: 534 NVELGE-IAAQHCFNLETNATAYYSLLANIYSSAGRWDDVGRLRKLWKEKKLAKLSGCSW 592
Query: 448 IE 449
E
Sbjct: 593 TE 594
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/466 (22%), Positives = 197/466 (42%), Gaps = 60/466 (12%)
Query: 33 HGQTIKTGFCG--HVYVQTALLKMYGSLRCIDD-AFKVFEKMPEKDIIAWNSMLDAFASC 89
H I GF + V+ LL + R I + +P D +W + F+
Sbjct: 43 HACIIINGFNNLEPLLVRQILLSARNNPRRISQYVHSILYHLPHPDSFSWGWAIRYFSQQ 102
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISG--------------------------------- 116
GQ A+ L M + + +S
Sbjct: 103 GQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFSNCVYVQ 162
Query: 117 ------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
Y+++G +++A+ +FD++ K+VVSWNS++ + +G + +A +F ++ K+VI
Sbjct: 163 TALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKKDVI 222
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN+M++GY + LF +M N Y + +++S N G +++ R
Sbjct: 223 SWNSMISGYAKIGDMDRACVLFQQMPEKN----YSSWNALISGYVNCGDIKSAWRFF--- 275
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
D N + +I Y+KCG ++ + ++F + KD+ +NAMI A + AL
Sbjct: 276 -DAMPERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKAL 334
Query: 291 KLLGEMNDSC--VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
L EM + ++ D +T ++SACS G ++ + S + D G + ++
Sbjct: 335 WLFSEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVN-DLGTEIDDQLVTALL 393
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DL + +D+A EL + + + A++S C I+ + ++ M+ +
Sbjct: 394 DLYAKCGSVDKAYELFHGLNKKDVVA-YSAMISGCGINGKVADAIKLFDMMVDAQIH--- 449
Query: 409 GELMMFANLYASC---GQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
L F L +C G +E R+ + M D G+V + I V+
Sbjct: 450 PNLATFTGLLTACNHAGLVKEGYRFFSSMKDHGLVPSTDHYAIMVD 495
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 182/499 (36%), Positives = 272/499 (54%), Gaps = 55/499 (11%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G DNY++PLL KA LS +G + G + GF ++V A++ + S +D A
Sbjct: 74 GTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGA 133
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHA------MKLIDLMP--------------L 104
K+F+K +D+++WNSM++ + G A MK+ + P L
Sbjct: 134 RKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQL 193
Query: 105 KD-------------------VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
+D V N ++ Y + G + SAR +FD + K +VSW ++
Sbjct: 194 EDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM- 252
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
+F +M K+V+ WN M+ GY+ + E + LF+EM+A N+ PD +
Sbjct: 253 --------------LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEV 298
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ S LSAC+ LG+L+ G IH Y + L+ N TALIDMYAKCG I ++++VF +
Sbjct: 299 TMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQEL 358
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
++ W A+I GLALHG + A+ EM D+ V D++TF+GLLSAC H GLV+EG
Sbjct: 359 PGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 418
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
+ FS+M F ++ KL+HY CMVDLLGRA LL+ A ELI++MP E + GAL AC I
Sbjct: 419 KYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRI 478
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H ++ +G+R A + + S G ++ AN+Y W+EA + R +M G+ KT G
Sbjct: 479 HGNVLMGERAASKLLQMDPHDS-GIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGC 537
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IEVNG ++F+ H
Sbjct: 538 SSIEVNGIVYEFIVRDKSH 556
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 156/335 (46%), Gaps = 26/335 (7%)
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT-----SFNIM 113
R +D + + +WN + F A+ L + D T ++ ++
Sbjct: 26 RDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLL 85
Query: 114 ISGYARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
AR+ I I V D+ N++I + G+++ A +MF K V+++
Sbjct: 86 FKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDL 145
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++WN+M+ GY+R E ++ + EMK +KPD +T+ V+S+CA L L+ G H Y
Sbjct: 146 VSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCY 205
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVF----YKSQV------------KDVFCW 273
+NGL AL+DMY KCG++E + ++F K+ V KDV W
Sbjct: 206 IEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPW 265
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
NAMI G G AL L EM + D++T + LSACS G + G + +EK
Sbjct: 266 NAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK 325
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++ + ++D+ + + +AI++ + +P
Sbjct: 326 -HELSLNVALGTALIDMYAKCGKITKAIQVFQELP 359
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 98/451 (21%), Positives = 175/451 (38%), Gaps = 89/451 (19%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ D + ++ + L +G H + G V + AL+ MY
Sbjct: 171 MKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGN 230
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A K+F+ M K +++W +M L D MP KDV +N MI GY
Sbjct: 231 LESARKLFDSMTNKTMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHA 275
Query: 121 GKIHSARYIFDKVPAK----------------------DVVSW----------------- 141
+ A +F+++ A DV W
Sbjct: 276 NRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALG 335
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+LI Y G++ KA ++F+++ +N +TW +++G + F EM +V
Sbjct: 336 TALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM 395
Query: 202 PDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD +T +LSAC + G +E G + ++ L+ + ++D+ + G +E++ E
Sbjct: 396 PDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEE 455
Query: 261 VFYKSQVK-DVFCWNAMILGLALHGY----GYAALKLLG-EMNDSCVKADDITFIGLLSA 314
+ ++ D W A+ +HG AA KLL + +DS + G
Sbjct: 456 LIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEM 515
Query: 315 CSHAG-----LVQEGCE-------------LFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
AG + Q G E ++ + +D + + Y C++
Sbjct: 516 WKEAGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQ------- 568
Query: 357 LDRAIELIEAMPFEPT---ESILGALLSACV 384
L R +EL+E P P S+ G+ C+
Sbjct: 569 LTRQLELVECTPVFPIFGDNSLFGSDFGRCI 599
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 165/449 (36%), Positives = 261/449 (58%), Gaps = 40/449 (8%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D +FP +L+A + + G +H +K G +V+ AL+ M+ +L + A
Sbjct: 111 LRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAA 170
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
+F+ +D +AW++ MISG+AR G I +
Sbjct: 171 ALFDGEAREDAVAWSA-------------------------------MISGFARRGDIGA 199
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD+ P KD+VSWN +I AY G+M A E+F ++V++WN M++GY+R
Sbjct: 200 ARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSR 259
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ ++LF++M+A KPD +T+ S+LSACA+ G L+ G R+H + + G S TTAL
Sbjct: 260 KQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLS--GRFSRIGPTTAL 317
Query: 246 ----IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
IDMYAKCGS+ +LEVF+ Q K+V WN++I GLALHG+ ++ + +M V
Sbjct: 318 GNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNV 377
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
K D+ITF+ +L+ACSH G+V +G E FS M++ + + ++HYGCMVD+L R LL A
Sbjct: 378 KPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAF 437
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYAS 420
E I M EP I LL AC IH ++E+ + + ++ A+S+ + G+ ++ +N+YAS
Sbjct: 438 EFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSD--ASGDFVLLSNIYAS 495
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
G+W + R +M+D+G+ K AG +VI+
Sbjct: 496 VGEWPGSENMRKLMDDSGVNKEAGRAVID 524
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 148/344 (43%), Gaps = 42/344 (12%)
Query: 104 LKDVTSFNIMISGYA---RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEM 160
L D ++ +I A R G H AR +FD++P D +N+LI ++ A
Sbjct: 37 LSDSSALRELIFASAVGVRGGTAH-ARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDA--- 92
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
V+ Y R + DL ++PD T VL ACA +G+
Sbjct: 93 ---------------VSIYARMARHSADCDLM------TLRPDKRTFPFVLRACAAMGAG 131
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
ETGA++H + G S+ ALI M+A G + + +F +D W+AMI G
Sbjct: 132 ETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGF 191
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
A G AA +L E S VK D +++ +++A + G + ELF D R
Sbjct: 192 ARRGDIGAARELFDE---SPVK-DLVSWNVMITAYAKLGDMAPARELF-----DGAPDRD 242
Query: 341 LEHYGCMVDLLGRARLLDRAIELIE---AMPFEPTESILGALLSACVIHQDLEIGDRVAK 397
+ + M+ R +A+EL E AM +P + +LLSAC DL+ G R+
Sbjct: 243 VVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302
Query: 398 MVCAKSNYLSDGELMMFA--NLYASCGQWEEANRWRNMMNDTGI 439
+ + + + + A ++YA CG A +M D +
Sbjct: 303 FLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNV 346
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/489 (34%), Positives = 266/489 (54%), Gaps = 40/489 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ +N ++ L KA + G +H + +K GF H+YV AL+ MYGS
Sbjct: 68 MYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGH 127
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--------------- 105
+ A KVF++MPE+D+++WNS++ + C + + + + M +
Sbjct: 128 LGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLA 187
Query: 106 ------------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
DV N +I Y R G +H AR +FD++ +++VSW
Sbjct: 188 CTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSW 247
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N++I+ Y AG + A E+F M ++VI+W M+T Y ++ + E + LF EM VK
Sbjct: 248 NAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVK 307
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +TV SVLSACA+ GSL+ G H Y + ++ + ALIDMY KCG +E++LEV
Sbjct: 308 PDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEV 367
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + + KD W ++I GLA++G+ +AL M V+ F+G+L AC+HAGLV
Sbjct: 368 FKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLV 427
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+G E F MEK +G+ +++HYGC+VDLL R+ L RA E I+ MP P I LLS
Sbjct: 428 DKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLS 487
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
A +H ++ + + +A + + + G ++ +N YA +WE+A + R +M + + K
Sbjct: 488 ASQVHGNIPLAE-IATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQK 546
Query: 442 TAGSSVIEV 450
+GSS IE+
Sbjct: 547 PSGSSCIEM 555
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 128/285 (44%), Gaps = 17/285 (5%)
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
KA +F+++ + WN M+ G+ S E + +++ M + + LT + ACA
Sbjct: 29 KAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACA 88
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
+ + G+ IH G S+ + + ALI+MY CG + + +VF + +D+ WN+
Sbjct: 89 RVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNS 148
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
++ G L + M + VK D +T + ++ AC+ G + +E++
Sbjct: 149 LVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEEN- 207
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395
V + ++D+ GR L+ A + + M + S ++ +
Sbjct: 208 NVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGY----------GKA 257
Query: 396 AKMVCAKSNY--LSDGELMMFANL---YASCGQWEEANR-WRNMM 434
+V A+ + +S +++ + N+ Y+ GQ+ EA R ++ MM
Sbjct: 258 GNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMM 302
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 175/526 (33%), Positives = 278/526 (52%), Gaps = 63/526 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKM------ 54
M+ + N++ +LKA L+ G ++G +K GF + VQ ++L +
Sbjct: 92 MRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRK 151
Query: 55 -------------------------YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
YG+ +D A K F++MPE+++++W SM+ +
Sbjct: 152 VDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKA 211
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
G M A L D MP+KD+ S+N+M+SGY IG +AR IF K+P D SWN +I +
Sbjct: 212 GDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFC 271
Query: 150 NAGEMEKAGEMFKKMLVKNVI-------------------------------TWNTMVTG 178
AGE+E A + F +M KNVI TW+TM+ G
Sbjct: 272 KAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGG 331
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y R+ ++ ++LF+ K ++KPD + ++SAC+ LG ++ I L S+
Sbjct: 332 YARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSD 391
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
T+LIDMYAKCGSIE++L++F + KD+ C++ MI LA HG G A+ L +M
Sbjct: 392 LRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQR 451
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ +K D +TF+G+L+AC+H GLV EG + F +M ++FG+ +HY C+VDLLGR L+
Sbjct: 452 ANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLE 511
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A LI MP P + GALL+AC +H ++++ + VA K + G ++ +N+Y
Sbjct: 512 EAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAE-VAAAELFKIEPDNSGNYILLSNIY 570
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
A+ G+W + R + + + K GSS IE++ H+F+ G + H
Sbjct: 571 AAAGRWGSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMSH 616
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/391 (22%), Positives = 163/391 (41%), Gaps = 63/391 (16%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM 96
I++ +V LL++Y D A KVF+++ + + W S++ + Q D A
Sbjct: 27 IESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAF 86
Query: 97 KLIDLMPLKDVTSFNIMIS-------------------------GYA------------- 118
L M + ++ N IS G+A
Sbjct: 87 SLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLF 146
Query: 119 -RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
R K+ +AR FD++ KD+VSWN +I Y N ++ A + F +M +NV++W +M+
Sbjct: 147 MRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMIC 206
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA--CANLGSLETGARIHVYATDNGL 235
GY+++ E LFD M ++ + V+ + C N + IH + N +
Sbjct: 207 GYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIM 266
Query: 236 ASN-----------------PHATT----ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
S P+ ++D Y K G + +F + +K++ W+
Sbjct: 267 ISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWS 326
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
MI G A +G AL+L + +K D+ +G++SACS G++ + E
Sbjct: 327 TMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGII-DAAESIIHNYVG 385
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+ L + ++D+ + +++A+++ E
Sbjct: 386 PSLLSDLRVFTSLIDMYAKCGSIEKALQMFE 416
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 5/209 (2%)
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
IH+ I V + + V N L+ Y+ G + A ++F ++ N W +++ GY+ +
Sbjct: 21 IHARLLIESSVASSEFVI-NKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVEN 79
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
+ Y E LF +M+ + T++SVL A A L + G ++ + G A +
Sbjct: 80 RQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQ 139
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
+++D++ +C ++ + + F + KD+ WN MI G + A K M + V
Sbjct: 140 NSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNV- 198
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRM 331
+++ ++ AG + E LF M
Sbjct: 199 ---VSWTSMICGYVKAGDMAEAQVLFDSM 224
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 175/511 (34%), Positives = 278/511 (54%), Gaps = 49/511 (9%)
Query: 1 MQELGVHADNYSFPLLL----KAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYG 56
M + GV D+++FP LL + G L+ G LH +K G ++YVQ AL+KMY
Sbjct: 125 MLKEGVTPDSHTFPFLLNGLKRDGGALAC---GKKLHCHVVKFGLGSNLYVQNALVKMYS 181
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSF- 110
+D A VF++ ++D+ +WN M+ + + + +++L+ +L+ VT
Sbjct: 182 LCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLL 241
Query: 111 ---------------------------------NIMISGYARIGKIHSARYIFDKVPAKD 137
N +++ YA G++ A IF + A+D
Sbjct: 242 VLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARD 301
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V+SW S++ Y G ++ A F +M V++ I+W M+ GYLR+ + E +++F EM++
Sbjct: 302 VISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQS 361
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ PD T+ SVL+ACA+LGSLE G I Y N + ++ ALIDMY KCG E+
Sbjct: 362 AGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEK 421
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +VF+ +D F W AM++GLA +G G A+K+ +M D ++ DDIT++G+LSAC+H
Sbjct: 422 AQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNH 481
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+G+V + + F++M D + L HYGCMVD+LGRA L+ A E++ MP P + G
Sbjct: 482 SGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWG 541
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMND 436
ALL A +H D + + AK + +G + + N+YA C +W++ R + D
Sbjct: 542 ALLGASRLHNDEPMAELAAKKILELEP--DNGAVYALLCNIYAGCKRWKDLREVRRKIVD 599
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
I KT G S+IEVNG H+F+AG HL +
Sbjct: 600 VAIKKTPGFSLIEVNGFAHEFVAGDKSHLQS 630
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 148/314 (47%), Gaps = 19/314 (6%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRC--IDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
LH Q+I G + Q L + S + A+K+F K+PE D++ WN+M+ ++
Sbjct: 53 LHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKV 112
Query: 90 GQMDHAMKLIDLMPLKDVT----SFNIMISGYARIG-------KIHSARYIFDKVPAKDV 138
++L M + VT +F +++G R G K+H F ++
Sbjct: 113 DCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGL--GSNL 170
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
N+L+ Y+ G M+ A +F + ++V +WN M++GY R + Y E ++L EM+
Sbjct: 171 YVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERN 230
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
V P +T+ VLSAC+ + + R+H Y ++ + AL++ YA CG ++ +
Sbjct: 231 LVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIA 290
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+ +F + +DV W +++ G G LKL D D I++ ++ A
Sbjct: 291 VRIFRSMKARDVISWTSIVKGYVERG----NLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 319 GLVQEGCELFSRME 332
G E E+F M+
Sbjct: 347 GCFNESLEIFREMQ 360
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 239/380 (62%), Gaps = 1/380 (0%)
Query: 85 AFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
++AS G++D+++ L V + +I G+A G + SA+ +FD +P K +VS ++
Sbjct: 71 SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAM 130
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+ Y GE++ A +F M ++ + WN M+ GY ++ + E + LF M KP+
Sbjct: 131 LTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNE 190
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+TV SVLSAC LG+LE+G +H Y +NG+ N H TAL+DMY+KCGS+E + VF K
Sbjct: 191 VTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDK 250
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
KDV WN+MI+G A+HG+ AL+L M + +ITFIG+LSAC H+G V EG
Sbjct: 251 IDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEG 310
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
++F++M+ ++G+ K+EHYGCMV+LLGRA +++A EL++ M EP + G LL AC
Sbjct: 311 WDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACR 370
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
+H + +G+++ +++ + N + G ++ +N+YA+ G W+ R R MM D+G+ K G
Sbjct: 371 LHGKIALGEKIVELLVDQ-NLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPG 429
Query: 445 SSVIEVNGSYHKFLAGGIGH 464
S IEVN H+FLAGG+ H
Sbjct: 430 CSSIEVNNKVHEFLAGGLNH 449
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 17/237 (7%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L A G L + G +H G +V+V TAL+ MY ++DA VF+K+ +KD
Sbjct: 196 VLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKD 255
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYARIGKIHSARYIFD 131
++AWNSM+ +A G A++L M + NI ++S G + IF+
Sbjct: 256 VVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFN 315
Query: 132 KVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTG---YLRS 182
K+ + + + ++ AG +E+A E+ K M ++ + + W T++ + +
Sbjct: 316 KMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKI 375
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
L ++V+L + N Y+ ++++ +A N + AR+ D+G+ P
Sbjct: 376 ALGEKIVELLVDQNLAN-SGTYILLSNIYAAVGNWDGV---ARLRTMMKDSGVKKEP 428
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 262/474 (55%), Gaps = 42/474 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK--VFEKMPEKDIIAWNSMLDAFASC 89
+HGQ +K G H + LL Y S+ + + VF+++ + + WN+M+ A+++
Sbjct: 30 IHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNS 89
Query: 90 GQMDHAMKLIDLM------------PL---------------------------KDVTSF 110
+ A+ L M P +V +
Sbjct: 90 NDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYAT 149
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N ++ YA G I SA +FD +P++D+VSWN++I Y G +E A ++F+ M KNVI
Sbjct: 150 NSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVI 209
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +M+ G++R+ ++ E + L +M +KPD +T++ LSACA LG+LE G IH Y
Sbjct: 210 SWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYI 269
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
N + +P ALIDMY KCG ++++L VF K + K V+ W A+I G A+HG G AL
Sbjct: 270 GKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEAL 329
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+M + +K TF +L+ACSH GLV+EG LF M + + +EHYGCMVDL
Sbjct: 330 DWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDL 389
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L A E +E+MP +P +I G+LL+AC +H+ LE+G + K + + + DG
Sbjct: 390 LGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLI-ELDPEHDGR 448
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ A+++A+ G+W+EA++ R+ + + G++ G S I +NG H+F AG H
Sbjct: 449 YIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGVAHEFFAGAEPH 502
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 167/368 (45%), Gaps = 48/368 (13%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
+ Y+FP LLKA LS+ +H Q IK GF VY +LL++Y I A +F
Sbjct: 110 NAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLF 169
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ +P +DI++WN+M+D + CG ++ A K+ MP K+V S+ MI G+ R G A
Sbjct: 170 DLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALC 229
Query: 129 IFDKV------PAK---------------------------------DVVSWNSLILAYT 149
+ ++ P K D V +LI Y
Sbjct: 230 LLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYV 289
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
GEM+KA +F K+ K V TW ++ G+ E +D F +M+ +KP T T+
Sbjct: 290 KCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTA 349
Query: 210 VLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
VL+AC++ G +E G + +T + ++D+ + G ++++ E +K
Sbjct: 350 VLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIK 409
Query: 269 -DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD---DITFIGLLSACSHAGLVQEG 324
+ W +++ LH + L+L E+ ++ D D +I L S + AG E
Sbjct: 410 PNAAIWGSLLNACHLHKH----LELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEA 465
Query: 325 CELFSRME 332
++ S ++
Sbjct: 466 SQVRSHIK 473
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 265/461 (57%), Gaps = 33/461 (7%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
+ + +++P L KA + + G +HG +K G V++++A ++MY S ++D
Sbjct: 126 IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLED 185
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A K+F E D++ W N MI GY + G +
Sbjct: 186 ARKMFYS-GESDVVCW-------------------------------NTMIDGYLKCGVL 213
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
+A+ +F ++P K++ SWN +I G + A ++F +M ++ I+W++MV GY+ +
Sbjct: 214 EAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAG 273
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
Y E +++F +M+ +P ++SVL+AC+N+G+++ G +H Y N + + T
Sbjct: 274 RYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGT 333
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
AL+DMYAKCG ++ EVF + + +++F WNAMI GLA+HG AL+L ++ + +K
Sbjct: 334 ALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKP 393
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+ IT +G+L+AC+HAG V +G +F M + +GV +LEHYGCMVDLLGR+ L A +L
Sbjct: 394 NGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDL 453
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I +MP +P ++ GALL AC IH + ++ +RV K++ S G ++ +N+YA G+
Sbjct: 454 INSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNS-GRYVLLSNIYAKVGR 512
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+++ ++ R +M + GI G S++++NG+ H+F G H
Sbjct: 513 FDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSH 553
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 20/292 (6%)
Query: 143 SLILAYTNA--GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+L+ Y N + A ++F + NV WN ++ G L + + + + M +
Sbjct: 70 ALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI-DA 128
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+P+ T ++ AC+ +++ G +IH + +G+ S+ H +A I MYA G +E + +
Sbjct: 129 RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARK 188
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+FY + DV CWN MI G G AA L +M + + ++ GL + G
Sbjct: 189 MFYSGE-SDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGL----AKGGN 243
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILG 377
+ + +LF M + R + MVD A A+E+ + M E P IL
Sbjct: 244 LGDARKLFDEMSE-----RDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ----WE 425
++L+AC ++ G V + S L ++YA CG+ WE
Sbjct: 299 SVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWE 350
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 173/456 (37%), Positives = 255/456 (55%), Gaps = 33/456 (7%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D YSF +LKA G +HG +K+ V+V+ L+ +YG
Sbjct: 106 VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGR-------- 157
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
G + A K++D MP++D S+N ++S Y G +
Sbjct: 158 -----------------------SGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEE 194
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD++ ++V SWN +I Y AG +++A E+F M VK+V++WN MVT Y Y
Sbjct: 195 ARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCY 254
Query: 186 IEVVDLFDEMKAGNV-KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
EV+++F+ M + +PD T+ +VLSACA+LGSL G +HVY +G+ TA
Sbjct: 255 NEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATA 314
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMY+KCG I+++LEVF + +DV WN++I GL++HG G AL++ EM K +
Sbjct: 315 LVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPN 374
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITFIG+LSAC+H GL+ + +LF M +G+ +EHYGCMVDLLGR + A EL+
Sbjct: 375 GITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELV 434
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
+P + +L +LL AC LE +R+A + + S G + M +NLYAS G+W
Sbjct: 435 NEVPADEASILLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQM-SNLYASHGRW 493
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+EA R M + K G S+IEV+G H+FLAG
Sbjct: 494 DEAMEVRGKMRAERVKKNPGCSMIEVDGVVHEFLAG 529
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 118/277 (42%), Gaps = 17/277 (6%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A + ++ N T N+++ Y S + +F EM G V PD + T VL ACA
Sbjct: 63 AHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAA 122
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
E G +IH + L ++ LI++Y + G E + +V + V+D WN++
Sbjct: 123 FCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSL 182
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME-KDF 335
+ G A L EM + V++ + ++S + AGLV+E E+F M KD
Sbjct: 183 LSAYLDKGLVEEARALFDEMEERNVESWNF----MISGYAAAGLVKEAREVFDSMPVKDV 238
Query: 336 ----GVTRKLEHYGCMVDLLGRAR-LLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390
+ H GC ++L +LD + E P L +LSAC L
Sbjct: 239 VSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAE-------RPDGFTLVNVLSACASLGSLS 291
Query: 391 IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
G+ V + + ++Y+ CG+ ++A
Sbjct: 292 QGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKA 328
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/467 (35%), Positives = 274/467 (58%), Gaps = 4/467 (0%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ++Y+FPLL+K + S GL H + +K GF ++ + +L++MY I +A
Sbjct: 103 VPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNAR 162
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
VF++ D++++NSM+D + G++ A K+ + MP +DV S+N +I+GY +G + +
Sbjct: 163 MVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDA 222
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM--LVKNVITWNTMVTGYLRSQ 183
A +F+ +P +D VSWN +I G + A + F +M V+NV++WN+++ + R +
Sbjct: 223 ANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVK 282
Query: 184 LYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
Y E + LF +M G P+ T+ SVL+ACANLG L G +H + N + +
Sbjct: 283 NYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLL 342
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
T L+ MYAKCG+++ + VF + V+ V WN+MI+G LHG G AL+L EM + +
Sbjct: 343 TCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQ 402
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
+D TFI +LSAC+HAG+V EG F M++ + + K+EHYGCMVDLL RA L++ + E
Sbjct: 403 PNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEE 462
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
LI +P + +I GALLS C H D E+G+ VAK G ++ +N+YA+ G
Sbjct: 463 LIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKRFIELEPQ-DIGPYILLSNMYAAKG 521
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNLL 469
+W++ R M+ + G+ K A SS++ + K++ G+ ++
Sbjct: 522 RWDDVEHVRLMIKEKGLQKEAASSLVHLEDFESKYVKNNSGYRKKIM 568
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 128/304 (42%), Gaps = 45/304 (14%)
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD-EMKAGNVKPDYLTVTSVLSAC 214
+A +F + + NT++ Y R + + + +M A +V P++ T ++ C
Sbjct: 58 RATFLFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVC 117
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
++GS G + H G S+ A +LI MY+ G I + VF +S D+ +N
Sbjct: 118 TDIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYN 177
Query: 275 AMILGLALHGYGYAALKLLGEMND------SCVKA---------------------DDIT 307
+MI G +G AA K+ EM D +C+ A D ++
Sbjct: 178 SMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVS 237
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR-------LLDRA 360
+ ++ C+ G V + F RM R + + ++ L R + L +
Sbjct: 238 WNCMIDGCARVGNVSLAVKFFDRMP---AAVRNVVSWNSVLALHARVKNYGECLMLFGKM 294
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM--FANLY 418
+E EA+P E T L ++L+AC L +G V + +SN + L++ +Y
Sbjct: 295 VEGREAVPNEAT---LVSVLTACANLGKLSMGMWVHSFI--RSNNIKPDVLLLTCLLTMY 349
Query: 419 ASCG 422
A CG
Sbjct: 350 AKCG 353
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 173/493 (35%), Positives = 274/493 (55%), Gaps = 52/493 (10%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ AD++++P +L+A G+L S G H +KTGF Y ++L+ MY L D A
Sbjct: 41 GLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADVA 100
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS--------------- 109
K+F++MP + ++ WN M+ + CG+ A+ L + M +T
Sbjct: 101 RKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRA 160
Query: 110 -----------------------FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
N ++ Y + G + A +F+++P+++++SW L+
Sbjct: 161 GDLSLGRRIHAYMDGVFGFSLPVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVS 220
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y AG+++KA +F + K++I W M+ ++ + E + LF EM+ V+PD T
Sbjct: 221 GYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFT 280
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ ++L+ CANLG+L+ G IH +A D + + TALIDMYAKCG +++S+EVF + Q
Sbjct: 281 IVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQ 340
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+D W ++I GLA +G AL+L +M S VK D ITFIG+LSAC H GLV EG +
Sbjct: 341 GRDTTAWTSIICGLATNGQAGRALELFEDMERSKVKPDSITFIGVLSACCHGGLVDEGRK 400
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI-------EAMPFEPTESILGAL 379
F M+ + + ++EHY C+V+LLGRA LLD A +LI +AMP + GAL
Sbjct: 401 QFHAMKDVYRIPPRIEHYSCLVNLLGRAGLLDEAEKLIRDIQINKDAMP------LFGAL 454
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L+AC ++E+ +R+ K + + + D L+M +N+YA+ +WE+A R R+ M I
Sbjct: 455 LTACKAQGNVEMSERLTKRIGEQGYQIPDVNLLM-SNVYATASRWEDAIRVRSKMAHPTI 513
Query: 440 VKTAGSSVIEVNG 452
KTAG S+IEV G
Sbjct: 514 KKTAGCSLIEVKG 526
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 2/196 (1%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ R + V+ ++ +++ + D T VL A L G + H A
Sbjct: 15 NLLIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMK 74
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + + ++L+DMY G + + ++F + + + WN MI G AA+ L
Sbjct: 75 TGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIAL 134
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM S + D +T + ++ CS AG + G + + M+ FG + L ++D+
Sbjct: 135 AEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFS--LPVANALLDMYM 192
Query: 353 RARLLDRAIELIEAMP 368
+ L+ A++L E MP
Sbjct: 193 KNGCLEEAVKLFEQMP 208
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D ++ LL L + G +H + + TAL+ MY
Sbjct: 269 MQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGH 328
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+ + +VFE+M +D AW S++ A+ GQ A++L + M V +I G
Sbjct: 329 VKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMERSKVKPDSITFIG 384
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/404 (37%), Positives = 238/404 (58%), Gaps = 2/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +A ++FE++P +D+ AW +M+ F G +D A ++ + MP K+ S+N MI+GY +
Sbjct: 262 LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQS 321
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+I AR +FD++P+++ SWN+++ Y G +++A +F +M ++ I+W M++GY
Sbjct: 322 QQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+S E + LF +MK + + LS+CA + +LE G ++H G +
Sbjct: 382 QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYI 441
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
A AL+ MY KCGSIE++ +VF KD+ WN MI G A HG+G AL L M
Sbjct: 442 AGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK-MT 500
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+K DD+T +G+LSACSH G V +G E F+ M +++G+T +HY CM+DLLGRA LD A
Sbjct: 501 IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEA 560
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+ L+++MPF P + GALL A IH D E+G++ A+ V S G ++ +NLYA+
Sbjct: 561 LNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNS-GMYVLLSNLYAA 619
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+W E R+ M D G+ K G S +E+ H F G H
Sbjct: 620 SGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSH 663
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 189/413 (45%), Gaps = 82/413 (19%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y S D A KVFEKMP++D+I+WN ML + G + A L + MP KDV
Sbjct: 95 NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGE--------- 159
S+N M+SG+A+ G + AR IFD++ K+ +SWN L+ AY G +E A
Sbjct: 155 SWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWE 214
Query: 160 ----------------------MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
+F +M V++ I+WN M+TGY ++ L E LF+E+
Sbjct: 215 IVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI 274
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+V T+++S G L+ RI + N + A+I Y + IE+
Sbjct: 275 RDV----FAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQIEK 326
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ E+F + ++ WN M+ G A G A L EM + D I++ ++S +
Sbjct: 327 ARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEM----PQRDCISWAAMISGYAQ 382
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+G +E LF +M++D G+ L+R S L
Sbjct: 383 SGQSEEALHLFIKMKRDGGI-------------------LNR--------------SALA 409
Query: 378 ALLSACVIHQDLEIGDRV-AKMVCA--KSNYLSDGELMMFANLYASCGQWEEA 427
LS+C LE+G ++ ++V A ++ Y++ L+ +Y CG EEA
Sbjct: 410 CALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA---MYGKCGSIEEA 459
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 161/309 (52%), Gaps = 21/309 (6%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
+ A VF M + + +N+M+ + S + D A K+ + MP +D+ S+N+M+SGY + G
Sbjct: 77 ESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNG 136
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
+ +AR +F+++P KDVVSWN+++ + G +E+A ++F +MLVKN I+WN +++ Y++
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQ 196
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT--DNGLASNP 239
+ + LFD K D+ ++S +G R+ + D +
Sbjct: 197 NGRIEDARRLFDS------KMDW----EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDK 246
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ +I YA+ G + ++ +F + ++DVF W AM+ G +G A ++ EM +
Sbjct: 247 ISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK 306
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+++++ +++ + +++ ELF +M +R + MV + +D+
Sbjct: 307 ----NEVSWNAMIAGYVQSQQIEKARELFDQMP-----SRNTSSWNTMVTGYAQCGNIDQ 357
Query: 360 AIELIEAMP 368
A L + MP
Sbjct: 358 AKILFDEMP 366
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 171/376 (45%), Gaps = 29/376 (7%)
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
+ DI+ WN + A+ GQ + A+ + + M + ++N MISGY K AR +F+K
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P +D++SWN ++ Y G + A +F +M K+V++WN M++G+ ++ E +F
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
D+M N ++ +LSA G +E R+ D + S L+ Y +
Sbjct: 177 DQMLVKN----EISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS----WNCLMGGYVRK 228
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
++ + +F + V+D WN MI G A +G A +L E+ D + ++
Sbjct: 229 KRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PIRDVFAWTAMV 284
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
S G++ E +F M + V+ + M+ +++ +++A EL + MP T
Sbjct: 285 SGFVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNT 339
Query: 373 ES---ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA-N 428
S ++ I Q + D + + C + G YA GQ EEA +
Sbjct: 340 SSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISG--------YAQSGQSEEALH 391
Query: 429 RWRNMMNDTGIVKTAG 444
+ M D GI+ +
Sbjct: 392 LFIKMKRDGGILNRSA 407
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
+G LHG+ +K GF ALL MYG I++AF VFE + EKDI++WN+M+ +A
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYA 482
Query: 88 SCGQMDHAMKLIDLMPL----KDVT-------------------SFNIMISGY------- 117
G A+ L + M + DVT FN M Y
Sbjct: 483 RHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAK 542
Query: 118 ---------ARIGKIHSARYIFDKVP-AKDVVSWNSLILAYTNAGEM---EKAGEMFKKM 164
R G++ A + +P D +W +L+ A G+ EKA E +M
Sbjct: 543 HYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEM 602
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK--PDY 204
N + + Y S + EV ++ +M+ VK P Y
Sbjct: 603 EPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGY 644
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 181/497 (36%), Positives = 275/497 (55%), Gaps = 37/497 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++L + D++ P +LKA +S + +G +HG ++K G V+V AL++MY
Sbjct: 100 MRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGS 159
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFAS----------------------CGQMDHAMKL 98
+ A +F+KM E+D+++W++M+ A+ + C ++ +L
Sbjct: 160 LVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERL 219
Query: 99 I------DLMPLKDVTSFNIMIS----GYARIGK-IHSARYIFDKVPAKDVVSWNSLILA 147
++ P D+T +++IS G ++GK +H+ YI + +L+
Sbjct: 220 FVRMIEENVFP-NDITMLSLIISCGFVGAVQLGKRLHA--YILRNGFGMSLALATALVDM 276
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y GE+ A +F M K+V+TW M++ Y ++ LF +M+ V+P+ LT+
Sbjct: 277 YGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTM 336
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
S+LS CA G+L+ G H Y G+ + TALIDMYAKCG I + +F ++
Sbjct: 337 VSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAID 396
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+D+ WN M+ G +HGYG ALKL EM VK +DITFIG L ACSHAGLV EG L
Sbjct: 397 RDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGL 456
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F +M DFG+ K+EHYGCMVDLLGRA LLD A ++IE+MP P +I GA+L+AC IH+
Sbjct: 457 FEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHK 516
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
+ +G+ A+ + A + G ++ +N+YA+ +W + R + DTGI K G S
Sbjct: 517 NSNMGELAARELLALEPQ-NCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSS 575
Query: 448 IEVNGSYHKFLAGGIGH 464
IEVNG H F G H
Sbjct: 576 IEVNGLVHDFKMGDTAH 592
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 119/296 (40%), Gaps = 55/296 (18%)
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
++ + M+ +++ D + SVL AC+ + G IH ++ NGL S+ AL+ M
Sbjct: 94 LNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQM 153
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL------------------ 290
Y++CGS+ + +F K +DV W+ MI YG++
Sbjct: 154 YSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDL 213
Query: 291 ----KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKL---- 341
+L M + V +DIT + L+ +C G VQ G L + + ++ FG++ L
Sbjct: 214 EEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATAL 273
Query: 342 -EHYG------------------------CMVDLLGRARLLDRAIELIEAMP---FEPTE 373
+ YG M+ +A +D A +L M P E
Sbjct: 274 VDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNE 333
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
+ +LLS C ++ L++G + + + ++YA CG A R
Sbjct: 334 LTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQR 389
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/452 (37%), Positives = 262/452 (57%), Gaps = 37/452 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M V D+Y+FP +LKA L G +HG ++ GF + V+ LL
Sbjct: 99 MHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLL-------- 150
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
VF A CG ++ A L D DV +++ +I+GYAR
Sbjct: 151 ------VFH-----------------AKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARR 187
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +F+++P +D+VSWN +I Y GEME A +F + VK+V++WN M+ GY+
Sbjct: 188 GDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYV 247
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NP 239
L + ++LF+EM V PD +T+ S+LSACA+LG LE G ++H + + +
Sbjct: 248 VCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLST 307
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMYAKCG+I++SL+VF+ KDV WN++I+G+ALHG+G +L L M +
Sbjct: 308 LLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRT 367
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ ++ITF+G+L ACSHAG + EG + F M ++ + + H GCMVD+LGRA LL
Sbjct: 368 KICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKE 427
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA--KMVCAKSNYLSDGELMMFANL 417
A + I++M EP I LL+AC +H D+E+ +VA K+ + ++ G+ ++ +NL
Sbjct: 428 AAKFIDSMKIEPNAIIWRTLLAACKVHGDVELA-KVANEKLFSMRKDH--SGDYVLMSNL 484
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
YAS G+W+ A + R +M+D+G+ K GSS +E
Sbjct: 485 YASRGEWDGAEKVRKLMDDSGVTKIRGSSFVE 516
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 125/279 (44%), Gaps = 21/279 (7%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A ++F ++ + +N M+ G +S + + L+ EM VK D T VL AC
Sbjct: 61 AHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTR 120
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L + TG+ +H G SN L+ +AKCG + + +F S DV W+++
Sbjct: 121 LFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSL 180
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I G A G A KL EM + D +++ +++ G V++G +RM D
Sbjct: 181 IAGYARRGDLKVARKLFNEMPER----DLVSWNVMIT-----GYVKQGEMESARMLFDEA 231
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGD 393
+ + + M+ L +A+EL M P E L +LLSAC DLE G
Sbjct: 232 PVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENG- 290
Query: 394 RVAKMVCAKSNYLSDGELMM-----FANLYASCGQWEEA 427
K V AK +S G+L ++YA CG +E+
Sbjct: 291 ---KKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKES 326
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 217 LGSLETGARIHVYATDNGLASNPH--------ATTALIDMYAKCGSIEQSLEVFYKSQVK 268
L +L+T +IH NG +N + +T+L+ A + ++F +
Sbjct: 12 LPNLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQP 71
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
D F +N MI G + A+ L EM+ VK D TF +L AC+ V G
Sbjct: 72 DTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTG 127
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 176/499 (35%), Positives = 273/499 (54%), Gaps = 40/499 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G DNY++ L K L S +G + GQ +K GF +Y+ ++ M S+ A
Sbjct: 149 GCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLA 208
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS--------------- 109
KVF++ +D+++WNS+++ + Q AM + M + V
Sbjct: 209 HKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQL 268
Query: 110 ------------------------FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
N ++ Y + G + + + +FD + K VVSW ++I
Sbjct: 269 ESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMI 328
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
+ Y G ++ AG++F M KNV+ WN M+ +++ L E ++LF EM+ N+KPD +
Sbjct: 329 VGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKV 388
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ LSAC+ LG+L+TG H Y + L+ + TALIDMYAKCG++ ++L+VF +
Sbjct: 389 TMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEM 448
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
++ W A+I GLAL+G A+ +M DS + D+ITF+G+L+AC H GLV+EG
Sbjct: 449 PRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGR 508
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
+ F +M+ F ++ + +HY CMV+LLGRA LL+ A ELI+ MP E + GAL AC I
Sbjct: 509 KYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGI 568
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++L IG+R A + + S G ++ AN+Y G+WEEA R MM + G+ KT GS
Sbjct: 569 HRNLLIGERAASKLLDLDPHDS-GIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGS 627
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IEVNG ++F+ H
Sbjct: 628 SSIEVNGIINEFIVRDKSH 646
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 172/385 (44%), Gaps = 55/385 (14%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+ Q I TG + + L+ R +D K+ + ++ +WN+++
Sbjct: 72 IQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVES 131
Query: 90 GQMDHAMKLIDLM-------PLKDVTSF------NIMIS--GYARIGKIHSARYIFDKVP 134
+ L M P SF N+++S G+ +G++ + FDK
Sbjct: 132 ENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQV--LKMGFDK-- 187
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
D+ +N +I + GE A ++F + V+++++WN+++ GY+R + E + ++ +
Sbjct: 188 --DMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQ 245
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M +VKPD +T+ V+SACA L SL+ G IH Y ++GL AL+DMY KCG
Sbjct: 246 MITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGD 305
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHG------------------------------ 284
+E +F + K V W MI+G A +G
Sbjct: 306 LEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQA 365
Query: 285 -YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
+ AL+L EM S +K D +T + LSACS G + G + ++K ++ +
Sbjct: 366 NLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKH-NLSLDVAL 424
Query: 344 YGCMVDLLGRARLLDRAIELIEAMP 368
++D+ + + +A+++ MP
Sbjct: 425 GTALIDMYAKCGNMTKALQVFNEMP 449
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 84/185 (45%), Gaps = 10/185 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + D + L A L + G+ H K V + TAL+ MY
Sbjct: 378 MQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGN 437
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
+ A +VF +MP ++ + W +++ A G ++ A+ K+ID + D +F +++
Sbjct: 438 MTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTA 497
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + R FD++ ++ +S ++ ++ AG +E+A E+ K M ++ + +
Sbjct: 498 CCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAM 557
Query: 171 TWNTM 175
W +
Sbjct: 558 VWGAL 562
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 36/263 (13%)
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA--KCGSIE 256
N Y+ +LS N S +I GL + A++ LI A + +++
Sbjct: 45 NTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLD 104
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSAC 315
+++ Q +VF WNA+I G L L M + + D+ T+ L C
Sbjct: 105 YCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVC 164
Query: 316 SHAGLVQEGCELFSRM-----EKDF----------------GVTRKLEHYGCMVDLLG-- 352
++ L G E+ ++ +KD G+ K+ GC+ DL+
Sbjct: 165 ANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWN 224
Query: 353 -------RARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAK 402
R R A+ + + M E P E + ++SAC + L++G + + +
Sbjct: 225 SLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEES 284
Query: 403 SNYLSDGELMMFANLYASCGQWE 425
L + ++Y CG E
Sbjct: 285 GLNLKISLVNALMDMYVKCGDLE 307
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/447 (35%), Positives = 259/447 (57%), Gaps = 34/447 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D +FP +L+A + + G +H +K G +V+ AL+ M+
Sbjct: 107 GVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMH--------- 157
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
ASCG++ A L D +D +++ MI+G AR G I
Sbjct: 158 ----------------------ASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIV 195
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+AR +FD+ P KD VSWN +I AY GEM A +F ++ ++V++WN M++G++R
Sbjct: 196 AARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGS 255
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT-- 242
++ ++LF++M+ KPD +T+ S+LSACA+ G ++ G R+H ++ L +
Sbjct: 256 HVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILG 315
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
ALIDMYAKCGS++ +L+VF+ + KDV WN++I GLALHG+ ++ + +M V+
Sbjct: 316 NALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVR 375
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
D+ITF+ +L ACSH G+V +G E F+ M+ + + ++HYGCMVD+LGRA LL A E
Sbjct: 376 PDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFE 435
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
I+ M EP I LL AC +H ++E+ + + + N S G+ ++ +N+YAS G
Sbjct: 436 FIDTMKVEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARNDES-GDYVLLSNIYASAG 494
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIE 449
+W E+ + R +M+D+G+ K AG +V++
Sbjct: 495 EWSESEKMRKLMDDSGVNKQAGRTVVD 521
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 137/323 (42%), Gaps = 45/323 (13%)
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ S A G I A +FD++P D+ +N+LI + A ++ +M +
Sbjct: 47 LFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRG--- 103
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
G V+PD +T VL AC +G+ TGA++H +
Sbjct: 104 ------------------------SCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVV 139
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G S+ ALI M+A CG + + +F +D W+AMI G A G AA K
Sbjct: 140 KAGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARK 199
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L D C D +++ +++A + G + LF+R+ + R + + M+
Sbjct: 200 LF----DECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPE-----RDVVSWNAMISGH 250
Query: 352 GRARLLDRAIELIEAMPF---EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
R A+EL E M +P + +LLSAC D+++G R+ + +L
Sbjct: 251 VRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSL--SEMFLRT 308
Query: 409 GELMMFAN----LYASCGQWEEA 427
G ++ N +YA CG + A
Sbjct: 309 GFTVILGNALIDMYAKCGSMKSA 331
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/453 (37%), Positives = 257/453 (56%), Gaps = 34/453 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D ++F LLK L G +HG+ +K GF + +V+ L+ +
Sbjct: 104 MENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFH----- 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++CG + A + +P + V S++ + +GYAR
Sbjct: 159 --------------------------SNCGDLVIARSIFYDLPERSVVSWSALTAGYARR 192
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G++ AR IFD++P KD+VSWN +I Y GEME A +F + K+V+TWNTM+ GY+
Sbjct: 193 GELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYV 252
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NP 239
+ +++F+EM+ PD +T+ S+LSACA+LG L+ G ++H ++ +
Sbjct: 253 LRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSV 312
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND- 298
AL+DMYAKCGSIE +L+VF K + KDV WN++I GLA HG+ ++KL EM
Sbjct: 313 LLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQAL 372
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+K ++ITF+G++ ACSHAG V+EG F M + + + + H+GCMVDLLGRA LL
Sbjct: 373 KNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLS 432
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A ELI M EP I LL AC +H ++E+G R+A K G+ ++ +N+Y
Sbjct: 433 EAFELIAKMEIEPNAIIWRTLLGACRVHGNVELG-RLANERLLKLRRDESGDYVLLSNIY 491
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
AS G+W+ A R +M+D G+ K AG S+IE +
Sbjct: 492 ASAGEWDGAEEVRKLMDDGGVRKEAGRSLIEAD 524
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 134/289 (46%), Gaps = 21/289 (7%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A T +G + A ++F ++ ++ WNTM+ G +S+ +VV L+ +M+ VKPD T
Sbjct: 56 AMTISGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFT 115
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ +L C L +TG +H G N LI ++ CG + + +FY
Sbjct: 116 FSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLP 175
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+ V W+A+ G A G A ++ EM VK D +++ +++ G ++
Sbjct: 176 ERSVVSWSALTAGYARRGELGVARQIFDEM---PVK-DLVSWNVMITGYVKNGEMENART 231
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSAC 383
LF + VT G + L G R +A+E+ E M P E + +LLSAC
Sbjct: 232 LFDEAPEKDVVTWNTMIAGYV--LRGEQR---QALEMFEEMRNVGECPDEVTMLSLLSAC 286
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMM-----FANLYASCGQWEEA 427
DL++G K+ C+ S ++ G+L + ++YA CG E A
Sbjct: 287 ADLGDLQVG---RKLHCSISE-MTRGDLSVLLGNALVDMYAKCGSIEIA 331
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/404 (39%), Positives = 234/404 (57%), Gaps = 1/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A FE MP KD +WN+M+ FA QMD A L +MP K+V ++N MISGY
Sbjct: 54 MERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVEC 113
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + SA +F+K P K VV+W ++I Y G + A +F+KM KN++TWN M+ GY+
Sbjct: 114 GDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYI 173
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + V LF M ++P+ T++S L C+ L +L+ G ++H + L +
Sbjct: 174 ENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTT 233
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
A T+LI MY KCG +E ++F + +DV WNAMI G A HG G AL L EM +
Sbjct: 234 AGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKG 293
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+K D ITF+ +L AC+HAG G + F M KD+G+ K +HY CMVDLLGRA L A
Sbjct: 294 MKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEA 353
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
++LIE MPF+P ++ G LL AC IH++ E+ + ++ + + G + + AN+YA+
Sbjct: 354 VDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQL-ANVYAA 412
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+W+ R R M +VKT G S IEV H+F +G H
Sbjct: 413 TKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFH 456
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 40/265 (15%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V A++ Y +D A K+FEK P K ++AW +M+ + G++ A +L + MP
Sbjct: 99 NVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMP 158
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFD-------------------------------- 131
K++ ++N MI+GY + +F
Sbjct: 159 EKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQ 218
Query: 132 ------KVP-AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
K P D + SLI Y G +E ++F ++ ++V+TWN M++GY +
Sbjct: 219 VHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGE 278
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATT 243
+ + LFDEM +KPD++T +VL AC + G + G + H A D GL + P T
Sbjct: 279 GKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYT 338
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVK 268
++D+ + G + +++++ K K
Sbjct: 339 CMVDLLGRAGKLVEAVDLIEKMPFK 363
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 102 MPLKDVTSFNIMISGYARI-GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEM 160
M LK ++N +++G ++ GK+ A+ +F K+P D VS+N+++ Y ME+A
Sbjct: 1 MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
F+ M +K+ +WNTM+TG+ ++Q + DLF M NV +T +++S G L
Sbjct: 61 FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV----VTWNAMISGYVECGDL 116
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
++ ++ A + A TA+I Y K G I + +F K K++ WNAMI G
Sbjct: 117 DSALKLFEKAPFKSVV----AWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGY 172
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+ +KL M ++ + T L CS +Q G ++
Sbjct: 173 IENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQV 219
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 39/253 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ ++ + L LS+ +G +H K+ C T+L+ MY
Sbjct: 188 MVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGV 247
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++D +K+F ++P +D++ WN+M+ +A G+ A+ L D M
Sbjct: 248 LEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEM------------------ 289
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
+K D +++ ++++A +AG + + F M LV + M
Sbjct: 290 ---------IEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCM 340
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R+ +E VDL ++M KP ++L AC + + +A+ L
Sbjct: 341 VDLLGRAGKLVEAVDLIEKMP---FKPHAAVFGTLLGAC----RIHKNTEMAEFASQKLL 393
Query: 236 ASNPHATTALIDM 248
+P + T + +
Sbjct: 394 NLDPASATGYVQL 406
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 248/438 (56%), Gaps = 35/438 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A +FEKMPE+++++WN+++ A CG+++ A +L D MP +DV S+ MI+G ++
Sbjct: 162 IDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKN 221
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+I AR +FD++P ++VVSWN++I Y +++A ++F++M +++ +WNTM+TG +
Sbjct: 222 GRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLI 281
Query: 181 RSQLYIEVVDLFDEMKAGNV--------------------------------KPDYLTVT 208
++ LF+EM NV KP+ T
Sbjct: 282 QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFV 341
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK--SQ 266
SVL AC+NL L G ++H + + +ALI+MY+KCG + + ++F +
Sbjct: 342 SVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTS 401
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+D+ WN +I A HGYG A+ EM S K DD+T++GLLSACSHAGLV+EG +
Sbjct: 402 QRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLK 461
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F + KD + + +HY C+VDL GRA L A IE + +P+ + GALL+ C +H
Sbjct: 462 YFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVH 521
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
+++IG + AK + + + G ++ +N+YAS G+W EA R R M D G+ K G S
Sbjct: 522 ANVKIGKQAAKKLL-EVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCS 580
Query: 447 VIEVNGSYHKFLAGGIGH 464
IEV H F+ G H
Sbjct: 581 WIEVGNRVHVFVVGDKSH 598
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 158/293 (53%), Gaps = 16/293 (5%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-KDVTSFNIMISGYAR 119
I +A ++F++M E D+I W +++ + CG ++ A +L D + K+V ++ M+ GY R
Sbjct: 68 IMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIR 127
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
KI A +F+++P K+VVSWN++I Y G ++ A +F+KM +NV++WNT+++
Sbjct: 128 SNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSML 187
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ E LFD M + D ++ T++++ + G ++ AR+ D N
Sbjct: 188 AQCGRIEEARRLFDRMP----ERDVISWTAMIAGLSKNGRIDE-ARLLF---DRMPERNV 239
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ A+I YA+ ++++L++F + +D+ WN MI GL +G A KL EM
Sbjct: 240 VSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEM--- 296
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
K + I++ +++ C G +E ++FSRM G + G V +LG
Sbjct: 297 -PKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAK---PNQGTFVSVLG 345
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 151/282 (53%), Gaps = 12/282 (4%)
Query: 56 GSLRC--IDDAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI 112
G ++C I++A ++F+++ +K+++ W +M+ + ++ A KL + MP K+V S+N
Sbjct: 92 GYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNT 151
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
MI GYA+ G+I SA Y+F+K+P ++VVSWN+++ G +E+A +F +M ++VI+W
Sbjct: 152 MIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISW 211
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+ G ++ E LFD M NV ++ ++++ A L+ + +
Sbjct: 212 TAMIAGLSKNGRIDEARLLFDRMPERNV----VSWNAMITGYAQNLRLDEALDLFERMPE 267
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L S T LI + G + ++ ++F + K+V W MI G G ALK+
Sbjct: 268 RDLPSWNTMITGLI----QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKI 323
Query: 293 LGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
M + + K + TF+ +L ACS+ + EG ++ + K
Sbjct: 324 FSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISK 365
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 151/314 (48%), Gaps = 29/314 (9%)
Query: 102 MPLKDVT------SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEME 155
+P KD T N MI+ ++ G+I AR +FD++ DV++W ++I Y G +E
Sbjct: 41 IPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIE 100
Query: 156 KAGEMFKKM-LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
+A +F ++ KNV+TW MV GY+RS + LF+EM NV ++ +++
Sbjct: 101 EARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNV----VSWNTMIDGY 156
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
A G +++ +Y + N + ++ M A+CG IE++ +F + +DV W
Sbjct: 157 AQNGRIDSA----MYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWT 212
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
AMI GL+ +G A L M + V +++ +++ + + E +LF RM +
Sbjct: 213 AMIAGLSKNGRIDEARLLFDRMPERNV----VSWNAMITGYAQNLRLDEALDLFERMPE- 267
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV----IHQDLE 390
R L + M+ L + L RA +L MP + S +++ CV + L+
Sbjct: 268 ----RDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVIS-WTTMITGCVQEGESEEALK 322
Query: 391 IGDRVAKMVCAKSN 404
I R+ AK N
Sbjct: 323 IFSRMLSTNGAKPN 336
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 103/250 (41%), Gaps = 19/250 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + +F +L A L+ G +H KT + +V +AL+ MY + A
Sbjct: 332 GAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTA 391
Query: 65 FKVFEK--MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYA 118
K+F+ ++D+++WN ++ A+A G A+ M D ++ ++S +
Sbjct: 392 RKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS 451
Query: 119 RIGKIHSARYIFDKVPAKDVV-----SWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITW 172
G + FD++ + + L+ AG +++A +++ K + W
Sbjct: 452 HAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVW 511
Query: 173 NTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++ G + ++ + E++ N YL ++++ A+ G AR+ +
Sbjct: 512 GALLAGCNVHANVKIGKQAAKKLLEVEPENAGT-YLLLSNIY---ASTGKWREAARVRLK 567
Query: 230 ATDNGLASNP 239
D GL P
Sbjct: 568 MKDKGLKKQP 577
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/470 (35%), Positives = 261/470 (55%), Gaps = 36/470 (7%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +H + G H + L + Y SL +D + +F + + W +++ A
Sbjct: 47 LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106
Query: 90 GQMDHAM----------------------KLIDLMPLKDVTSFNI-------------MI 114
G + A+ KL + P K + S + ++
Sbjct: 107 GLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLL 166
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
YAR G + SA+ +FD +P K +VS +++ Y GE++ A +F M ++ + WN
Sbjct: 167 DVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNV 226
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ GY ++ + E + LF M KP+ +TV SVLSAC LG+LE+G +H Y +NG
Sbjct: 227 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNG 286
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
+ N H TAL+DMY+KCGS+E + VF K KDV WN+MI+G A+HG+ AL+L
Sbjct: 287 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFK 346
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
M + +ITFIG+LSAC H+G V EG ++F++M+ ++G+ K+EHYGCMV+LLGRA
Sbjct: 347 SMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRA 406
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
+++A EL++ M EP + G LL AC +H + +G+++ +++ + N + G ++
Sbjct: 407 GHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQ-NLANSGTYILL 465
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA+ G W+ R R MM D+G+ K G S IEVN H+FLAGG+ H
Sbjct: 466 SNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNH 515
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 167/380 (43%), Gaps = 53/380 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + ++F +LK I G LH Q +K GF +YV+T LL +Y + A
Sbjct: 123 GVEPNAFTFSSILKLCPIEP----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSA 178
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
++F+ MPEK +++ +ML +A G++D A L D M +D +N+MI GY + G +
Sbjct: 179 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPN 238
Query: 125 SARYIF----------DKVPAKDVVS------------W-----------------NSLI 145
A +F ++V V+S W +L+
Sbjct: 239 EALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALV 298
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y+ G +E A +F K+ K+V+ WN+M+ GY E + LF M + P +
Sbjct: 299 DMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNI 358
Query: 206 TVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T +LSAC + G + G I D G+ ++++ + G +EQ+ E+
Sbjct: 359 TFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKN 418
Query: 265 SQVK-DVFCWNAMILGLALHG---YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
++ D W ++ LHG G ++LL + N A+ T+I LLS A
Sbjct: 419 MNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN----LANSGTYI-LLSNIYAAVG 473
Query: 321 VQEGCELFSRMEKDFGVTRK 340
+G M KD GV ++
Sbjct: 474 NWDGVARLRTMMKDSGVKKE 493
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 173/493 (35%), Positives = 275/493 (55%), Gaps = 42/493 (8%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ DN+++PLLLK SSC+GL + G +K GF ++V A + M S + A+
Sbjct: 154 LKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAY 213
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG--------- 116
VF K +D++ WNSM+ G A+K+ M + V I + G
Sbjct: 214 DVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQ 273
Query: 117 ------------------------------YARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
Y + G++ +AR +FD + K +VSW +++L
Sbjct: 274 DLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVL 333
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G ++ A E+ K+ K+V+ WN +++G ++++ E + LF EM+ ++PD +T
Sbjct: 334 GYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVT 393
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ + LSAC+ LG+L+ G IH Y + L+ + TAL+DMYAKCG+I ++L+VF +
Sbjct: 394 MVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP 453
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
++ W A+I GLALHG AL +M + D+ITF+G+LSAC H GLV+EG +
Sbjct: 454 QRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRK 513
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
FS M F V+ KL+HY CMVDLLGRA L+ A EL++ MP ++LGAL AC ++
Sbjct: 514 YFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVY 573
Query: 387 QDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
+++IG+R A K++ + + G ++ A++Y+ W+EA R +MND G+ KT G
Sbjct: 574 GNVQIGERTAFKLL--EIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGC 631
Query: 446 SVIEVNGSYHKFL 458
S++E+NG H+F+
Sbjct: 632 SLVEINGIVHEFV 644
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 176/383 (45%), Gaps = 51/383 (13%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+ Q + TG + + + L+ + +D ++ ++ E ++ +WN+ + +
Sbjct: 76 IQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVES 135
Query: 90 GQMDHAMKLIDLMPL-----KDVTSFNIMISG----YAR---IGKI-HSARYIFDKVPAK 136
G ++ L M L D ++ +++ G Y+ +G + H ++ F+
Sbjct: 136 GDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFEC---- 191
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
D+ N+ I + GE+ A ++F K V++++TWN+M+TG ++ L IE + ++ EM+
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS-- 254
A V+P+ +T+ ++S+C+ + L G H Y ++GL T AL+DMY KCG
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311
Query: 255 -----------------------------IEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
++ + E+ YK K V WNA+I G
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
G AL L EM ++ D +T + LSACS G + G + +E+ ++ +
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER-HKLSIDVALGT 430
Query: 346 CMVDLLGRARLLDRAIELIEAMP 368
+VD+ + + RA+++ E +P
Sbjct: 431 ALVDMYAKCGNIARALQVFEEIP 453
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 9/173 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + D + L A L + +G+ +H + V + TAL+ MY
Sbjct: 382 MQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGN 441
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
I A +VFE++P+++ + W +++ A G A+ K+I + + D +F ++S
Sbjct: 442 IARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSA 501
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKM 164
G + R F ++ +K VS ++ ++ AG +E+A E+ K M
Sbjct: 502 CCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNM 554
>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
Length = 594
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/504 (33%), Positives = 278/504 (55%), Gaps = 37/504 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y C
Sbjct: 93 MLENGVSVDKFSSSLVLKACSRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIALYLKCGC 152
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL------------------- 101
+ A ++F++MP++D +++N + CG ++ A +L L
Sbjct: 153 LGFARQIFDRMPKRDSVSYNPXXEGXVKCGLIESARELFXLXXXEXKNXXSXXCMXSGYA 212
Query: 102 ---------------MPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
MP KD+ S+N +I GY + G+ A+ ++D +P +DV++W ++I
Sbjct: 213 QTSDGLXIASKLFSEMPEKDLISWNSIIDGYVKHGRXEDAKDLYDVMPRRDVITWATMID 272
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y G + +A + + ++V+ +N+M+ GY++++ ++E ++LF +M K ++ PD
Sbjct: 273 GYVKLGFVHQAKTLLDXIPHRDVVAYNSMMAGYVQNKYHMEALELFGDMEKESHLSPDET 332
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ VLSA A LG L +++Y +LIDMY+KCGSI+ ++ VF
Sbjct: 333 TLVIVLSAIAQLGRLSKAVDMYLYVVKKQFFLGGKLWVSLIDMYSKCGSIQHAMLVFEGL 392
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K + WNA+I GLA+HG G A +L ++ S +K DDITF G+L+ACSH+G V+EG
Sbjct: 393 ENKTIDHWNAIIGGLAIHGRGGPAFNMLLQIERSSIKPDDITFTGVLNACSHSGFVKEGL 452
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC
Sbjct: 453 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEKMPIEPNDVIWRTFLTACSH 512
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ E+G+ VAK + +++Y + ++ +N+YAS G W++ R MM + I K G
Sbjct: 513 HKEFEMGELVAKHLILQADY-NPSSYVLLSNMYASFGMWKDVRGVRTMMKERKIPKIPGC 571
Query: 446 SVIEVNGSYHKFLAGGIGHLSNLL 469
S IE++G H+F I +SN L
Sbjct: 572 SSIELDGRVHEFFVDSI-EVSNTL 594
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/391 (21%), Positives = 160/391 (40%), Gaps = 65/391 (16%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGS---------LRCIDDAFKV--FEKMPEKDIIAWN 80
+H Q I TGF + + T ++ + S RC+ + V F +D WN
Sbjct: 12 IHAQLITTGFIKNTNLTTRIVLAFASSRHQHLAEFARCVFEEHYVYSFPYGETEDPFLWN 71
Query: 81 SMLDAFASCGQMDHAMKLIDLM--------------PLK--------------------- 105
+++ + + A+ L LM LK
Sbjct: 72 AVMKSHSHGTDPRRALLLFCLMLENGVSVDKFSSSLVLKACSRLGFVKGGMQIHGFLRKT 131
Query: 106 ----DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
D+ N +I+ Y + G + AR IFD++P +D VS+N G +E A E+F
Sbjct: 132 GLWSDLFLQNCLIALYLKCGCLGFARQIFDRMPKRDSVSYNPXXEGXVKCGLIESARELF 191
Query: 162 --KKMLVKNVITWNTMVTGYLRSQLYIEVVD-LFDEMKAGNVKPDYLTVTSVLSACANLG 218
KN + M +GY ++ + + LF EM + D ++ S++ G
Sbjct: 192 XLXXXEXKNXXSXXCMXSGYAQTSDGLXIASKLFSEMP----EKDLISWNSIIDGYVKHG 247
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
E ++ + + +ID Y K G + Q+ + +DV +N+M+
Sbjct: 248 RXEDAKDLYDVMPRRDVIT----WATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNSMMA 303
Query: 279 GLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELF-SRMEKDFG 336
G + Y AL+L G+M +S + D+ T + +LSA + G + + +++ ++K F
Sbjct: 304 GYVQNKYHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDMYLYVVKKQFF 363
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ KL + ++D+ + + A+ + E +
Sbjct: 364 LGGKL--WVSLIDMYSKCGSIQHAMLVFEGL 392
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 18/158 (11%)
Query: 225 RIHVYATDNGLASNPHATTALI-----------DMYAKCGSIEQSLEVFYKSQVKDVFCW 273
+IH G N + TT ++ +A+C E + F + +D F W
Sbjct: 11 KIHAQLITTGFIKNTNLTTRIVLAFASSRHQHLAEFARCVFEEHYVYSFPYGETEDPFLW 70
Query: 274 NAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
NA+ + H +G AL L M ++ V D + +L ACS G V+ G ++
Sbjct: 71 NAV---MKSHSHGTDPRRALLLFCLMLENGVSVDKFSSSLVLKACSRLGFVKGGMQIHGF 127
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ K G+ L C++ L + L A ++ + MP
Sbjct: 128 LRKT-GLWSDLFLQNCLIALYLKCGCLGFARQIFDRMP 164
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 179/507 (35%), Positives = 274/507 (54%), Gaps = 44/507 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G++ ++++FP L K+ ++ LH +K H +V T+L+ MY +
Sbjct: 118 MLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGE 177
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A VF+K +D +++ +++ + S G +D A +L D +P KDV S+N MI+GY +
Sbjct: 178 LRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQS 237
Query: 121 GKIHSARYIFDKVPAKDVV--------------------------SW------------- 141
G+ A F ++ DV SW
Sbjct: 238 GRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLV 297
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+L+ Y+ GE+ A ++F M K+VI WNTM+ GY LY E + LF+ M NV
Sbjct: 298 NALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVT 357
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN----GLASNPHATTALIDMYAKCGSIEQ 257
P+ +T +VL ACA+LG+L+ G +H Y N G +N T++I MYAKCG +E
Sbjct: 358 PNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEV 417
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +VF + + WNAMI GLA++G+ AL L EM + + DDITF+G+LSAC+
Sbjct: 418 AEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQ 477
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
AG V+ G FS M KD+G++ KL+HYGCM+DLL R+ D A L+ M EP +I G
Sbjct: 478 AGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWG 537
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
+LL+AC IH +E G+ VA+ + S G ++ +N+YA G+W++ + R +ND
Sbjct: 538 SLLNACRIHGQVEFGEYVAERLFELEPENS-GAYVLLSNIYAGAGRWDDVAKIRTKLNDK 596
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G + IE++G H+FL G H
Sbjct: 597 GMKKVPGCTSIEIDGVVHEFLVGDKFH 623
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 32/231 (13%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N+ WNT++ + + + LF +M + P+ T S+ +CA + ++H
Sbjct: 91 NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-------------------- 267
+A L +PH T+LI MY++ G + + VF KS +
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVD 210
Query: 268 -----------KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
KDV WNAMI G G AL M ++ V + T + +LSAC
Sbjct: 211 DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACG 270
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
H ++ G + S + +D G + L+ +VD+ + + A +L + M
Sbjct: 271 HLRSLELGKWIGSWV-RDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGM 320
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 168/490 (34%), Positives = 272/490 (55%), Gaps = 40/490 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D++++P+L K L S +G M+ G +K +V A + M+ S +++A KV
Sbjct: 154 PDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKV 213
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSF------------ 110
F++ P +D+++WN +++ + G+ + A+ + LM + DVT
Sbjct: 214 FDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDL 273
Query: 111 ----------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
N ++ +++ G IH AR IFD + + +VSW ++I Y
Sbjct: 274 NRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGY 333
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G ++ + ++F M K+V+ WN M+ G ++++ + + LF EM+ N KPD +T+
Sbjct: 334 ARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMI 393
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
LSAC+ LG+L+ G IH Y L+ N T+L+DMYAKCG+I ++L VF+ Q +
Sbjct: 394 HCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTR 453
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+ + A+I GLALHG A+ EM D+ + D+ITFIGLLSAC H G++Q G + F
Sbjct: 454 NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYF 513
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQD 388
S+M+ F + +L+HY MVDLLGRA LL+ A L+E+MP E ++ GALL C +H +
Sbjct: 514 SQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGN 573
Query: 389 LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+E+G++ AK + + + G ++ +Y WE+A R R MMN+ G+ K G S I
Sbjct: 574 VELGEKAAKKLL-ELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
Query: 449 EVNGSYHKFL 458
EVNG +F+
Sbjct: 633 EVNGIVCEFI 642
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 146/344 (42%), Gaps = 46/344 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D+ + L+ + +L G + + G + + AL+ M+
Sbjct: 248 MESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGD 307
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I +A ++F+ + ++ I++W +M+ +A CG +D + KL D M KDV +N MI G +
Sbjct: 308 IHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQA 367
Query: 121 GKIHSARYIFDKVP----------------------AKDVVSW----------------- 141
+ A +F ++ A DV W
Sbjct: 368 KRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALG 427
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
SL+ Y G + +A +F + +N +T+ ++ G + F+EM +
Sbjct: 428 TSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIA 487
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSL 259
PD +T +LSAC + G ++TG R + + NP + ++D+ + G +E++
Sbjct: 488 PDEITFIGLLSACCHGGMIQTG-RDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEAD 546
Query: 260 EVFYKSQVK-DVFCWNAMILGLALHG---YGYAALKLLGEMNDS 299
+ ++ D W A++ G +HG G A K L E++ S
Sbjct: 547 RLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPS 590
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 4/210 (1%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAG--NVKPD 203
A + + ++ + ++ K + N+ +WN + G+ S+ E L+ +M + G +PD
Sbjct: 96 ALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPD 155
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ T + CA+L G I + L H A I M+A CG +E + +VF
Sbjct: 156 HFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFD 215
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+S V+D+ WN +I G G A+ + M VK DD+T IGL+S+CS G +
Sbjct: 216 ESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNR 275
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
G E + + K+ G+ + ++D+ +
Sbjct: 276 GKEFYEYV-KENGLRMTIPLVNALMDMFSK 304
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 176/499 (35%), Positives = 271/499 (54%), Gaps = 71/499 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSL-R 59
M+ L V A++++F LLK + G ++HG+ +K GF V+VQ +LL Y +
Sbjct: 1 MKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSE 60
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID------------------- 100
+ A++VFE+MPE+D+I+WNSM+ A+ + G++ A+ L+D
Sbjct: 61 NLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSK 120
Query: 101 ------------LMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
MPL++ S+N MISGY RIG + +A+ IF ++P K VVSW ++I Y
Sbjct: 121 AGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGY 180
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTV 207
G+++ A +F M VKNV++WN M++GY+ + + + + +F M G +PD T+
Sbjct: 181 ATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTL 240
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
S+LSACA+LGSLE G I+ Y N L + ALIDM+AKCG +E + EVF+
Sbjct: 241 ISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSK 300
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+ + W M+ GLA++G A+ L +M K DD+ FI +LSAC+H GLV+EG +
Sbjct: 301 RCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRV 360
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F +M ++FG+ ++EHYGCMVDLLGRA L+ A ++++ P P+
Sbjct: 361 FDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEA-KIMDQEPSNPS--------------- 404
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
YL+ + +NL AS G+WE+ +R M + K G S
Sbjct: 405 -----------------YLT-----LVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSS 442
Query: 448 IEVNGSYHKFLAGGIGHLS 466
I+V H+FLA H+
Sbjct: 443 IQVGNRVHEFLAKDTRHVQ 461
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/405 (38%), Positives = 237/405 (58%), Gaps = 3/405 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A K+F++MPE++++AW +M+ A G +D A L D MP ++V S+N MISGYAR
Sbjct: 176 MDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARN 235
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+I A +F K+P +D+ SWN +I + ++E+A ++F KM +NVITW TM+ GYL
Sbjct: 236 HRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYL 295
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+S + +F+ M ++P+ +T + AC+NL L G ++H +
Sbjct: 296 QSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTF 355
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ L+++YAKCG I + +VF S+ KDV WN MI A HG G A+ L +M +
Sbjct: 356 IESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKG 415
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
K +D+T++GLLSACSH+GLV EG +F M KD + + EHY C++DL RA L A
Sbjct: 416 YKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDA 475
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYA 419
LI + EP+ ++ ALL C H + IGD A+ ++ A+ N + G + N+YA
Sbjct: 476 KRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPN--NAGTYTLLCNIYA 533
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G+W+EA + R+ MND G+ K G S IEV H F++ H
Sbjct: 534 SAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRDKSH 578
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TALL Y +D+A +F++MPE+++++WN+ML+A+ S G++ A L D MP
Sbjct: 97 NVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMP 156
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++D S+NI+++ R G + AR +FD++P ++V++W +++ +G +++A +F
Sbjct: 157 VRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDG 216
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +NV++WN M++GY R+ E DLF +M ++ A N+
Sbjct: 217 MPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDI------------ASWNI------ 258
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+I + + +E++ ++F K ++V W M+ G
Sbjct: 259 ---------------------MITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQS 297
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
AL++ M ++ + +TF+G + ACS+ + EG ++
Sbjct: 298 MQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQV 341
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 164/348 (47%), Gaps = 21/348 (6%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA-KDV 138
N + A+ G++ A +L D P +DV S+ +++ YAR G +H AR +FD+ A ++V
Sbjct: 39 NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNV 98
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
V+W +L+ Y AG +++A +F++M +NV++WNTM+ Y + + LFD M
Sbjct: 99 VTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPV- 157
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
D + +L+A G+++ ++ D N A T ++ A+ GS++++
Sbjct: 158 ---RDAGSWNILLAALVRSGNMDKARKLF----DRMPERNVMAWTTMVAGIARSGSVDEA 210
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+F ++V WNAMI G A + A L +M + + +I G +
Sbjct: 211 RALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRD-- 268
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESI 375
++ +LF +M + R + + M++ ++ + A+++ M E P +
Sbjct: 269 --LERAQDLFDKMPR-----RNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVT 321
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
+ AC L G +V +M+C S NLYA CG+
Sbjct: 322 FLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGE 369
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 13/246 (5%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + +F + A L+ G +H KT F ++++ L+ +Y I A
Sbjct: 314 GIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLA 373
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMISGYAR 119
KVF+ EKD+I+WN M+ A+A G A+ L + M K DVT ++S +
Sbjct: 374 RKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVG-LLSACSH 432
Query: 120 IGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT-WN 173
G + IF D+ A + LI + AG + A + + V+ T WN
Sbjct: 433 SGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWN 492
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
++ G S + DL + T T + + A+ G + A+I D
Sbjct: 493 ALLGG-CNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDR 551
Query: 234 GLASNP 239
GL P
Sbjct: 552 GLKKQP 557
>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 174/468 (37%), Positives = 269/468 (57%), Gaps = 38/468 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH---VYVQTALLKMYGS 57
MQ G+ ++ LKA ++ GL +HGQ K GF G +YV+TAL+ Y
Sbjct: 92 MQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCK 151
Query: 58 L-------RCIDD------------------------AFKVFEKMPEKDIIAWNSMLDAF 86
L + D+ A +VF+++P+KD+I+WNSM+ +
Sbjct: 152 LGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGY 211
Query: 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
A G M+ A+ L MP ++ S+N MISGY G I SAR FD +P + VSW ++I
Sbjct: 212 ARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQXNNVSWMTMIS 271
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDY 204
Y+ G+++ A E+F ++ K+++ +N M+ Y ++ E + LF+ M NV+PD
Sbjct: 272 GYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDE 331
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+T+ SV+SAC+ LG L G I Y G+ + H TAL+D+YAKCGSI+++ E+F+
Sbjct: 332 MTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHG 391
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ KD+ + AMILG ++G A+KL EM D+ + + ITFIGLL+A +HAGLV+EG
Sbjct: 392 LRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNLITFIGLLTAYNHAGLVEEG 451
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
F+ M+K + + ++HYG MVDLLGRA L A+ELI++MP +P + GALL AC
Sbjct: 452 YRCFTSMKK-YNLVPSVDHYGIMVDLLGRAGRLQEALELIKSMPMQPHAGVWGALLLACR 510
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRN 432
+H ++E G+ +A C + + G + +N+YAS +W++ R R
Sbjct: 511 LHNNVEFGE-IAAQHCFELEPDTTGYXSLLSNIYASGERWDDVKRLRK 557
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+W + + + E L+ +M+ + P ++S L ACA + G IH
Sbjct: 67 FSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQ 126
Query: 230 ATDNGLASNP---HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
G + + TAL+D Y K G +E + ++F + ++V WN+M+ G G
Sbjct: 127 VQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDL 186
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A ++ E+ + D I++ ++S + AG +++ LF +M + R +
Sbjct: 187 VVAQRVFDEIP----QKDVISWNSMISGYARAGDMEKALSLFQQMPE-----RNFASWNA 237
Query: 347 MVDLLGRARLLDRAIELIEAMP 368
M+ +D A +AMP
Sbjct: 238 MISGYVEFGDIDSARSFFDAMP 259
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/404 (38%), Positives = 242/404 (59%), Gaps = 1/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A F++MP KD +WN+M+ F+ G MD A +L +MP+++ S+N MISGY
Sbjct: 84 VESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVES 143
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A+ +F+ P + VV+W ++I + G++E A + F++M +KN++TWN M+ GY+
Sbjct: 144 GDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYI 203
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + LF M +P+ +++SVL C+NL +L+ G ++H + ++ N
Sbjct: 204 ENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNIT 263
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
A T+L+ MY KCG +E + ++F KDV WNAMI G A HG G AL L +M D
Sbjct: 264 AGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEG 323
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+K D ITF+ +LSAC+HAG V G E F+ M +D+GV K +HY C+VDLLGR L A
Sbjct: 324 MKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEA 383
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
++LI+ MPF+P +I G LL AC IH++LE+ + AK + + G + + AN+YA+
Sbjct: 384 VDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQL-ANVYAA 442
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+W+ R M D ++KT G S IEV H+F +G H
Sbjct: 443 MNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIH 486
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 137/324 (42%), Gaps = 48/324 (14%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN-AGEMEKAGEMFKKM 164
+V S N +I+ + R G ++SA +F+ + K V+WNS++ Y+N G+++ A ++F ++
Sbjct: 4 NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
++ ++N M+ YL + FD+M D + +++S + G ++
Sbjct: 64 PEPDIFSYNIMLACYLHNADVESARLFFDQMPV----KDTASWNTMISGFSQNGMMDQAR 119
Query: 225 RIH-VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+ V N ++ N A+I Y + G ++ + ++F + V+ V W AMI G
Sbjct: 120 ELFLVMPVRNSVSWN-----AMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKF 174
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G A K EM + + G + C + G +LF RM
Sbjct: 175 GKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQ----AENGLKLFKRM------------ 218
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
+E+ F P S L ++L C L++G +V +++C
Sbjct: 219 --------------------VES-GFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSP 257
Query: 404 NYLSDGELMMFANLYASCGQWEEA 427
+ ++Y CG E+A
Sbjct: 258 VSWNITAGTSLLSMYCKCGDLEDA 281
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 39/253 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G + S +L LS+ +G +H K+ ++ T+LL MY
Sbjct: 218 MVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGD 277
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA+K+F MP+KD++ WN+M+ +A G + A+ L D M
Sbjct: 278 LEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMR----------------- 320
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML----VKNVITWNTMV 176
D+ D +++ +++ A +AG ++ E F M+ V+ T V
Sbjct: 321 ----------DEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCV 370
Query: 177 TGYL-RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
L R +E VDL +M KP ++L AC +LE +A N L
Sbjct: 371 VDLLGRGGKLVEAVDLIKKMP---FKPHSAIFGTLLGACRIHKNLELAE----FAAKNLL 423
Query: 236 ASNPHATTALIDM 248
+P + + +
Sbjct: 424 NLDPESAAGYVQL 436
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 180/496 (36%), Positives = 273/496 (55%), Gaps = 44/496 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS---LRCIDDA 64
+ ++ P +L A + +S H +K+G + + L+ + + I A
Sbjct: 2 SSSFPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYA 61
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCG----------QMDHAMKLID----LMPLKDVTSF 110
+F ++P + WN+++ A+A+ QM HA L D LK SF
Sbjct: 62 HSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSF 121
Query: 111 -------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
N +I YA G I AR++ D++ +DVVSWN+L+
Sbjct: 122 SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALL 181
Query: 146 LAYTNAGEMEKAGE-MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
AY G ME A +F + VKNV++WN M+TGY + + EV+ LF++M+ VKPD
Sbjct: 182 SAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDN 241
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T+ SVLSACA++G+L G +H Y NG++ + TAL+DMY+KCGSIE++LEVF
Sbjct: 242 CTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNS 301
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
KD+ WN++I GL+ HG G AL++ EM K +++TF+ +LSACS AGL+ EG
Sbjct: 302 CLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEG 361
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
E+F+ M G+ +EHYGCMVDLLGR LL+ A EL++ MP + + +LL AC
Sbjct: 362 REMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACR 421
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
H ++E+ +RVA+ + S S + +N+YAS G+W++ R M G+ K G
Sbjct: 422 NHGNVELAERVAQKLLELSPQESSS-FVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPG 480
Query: 445 SSVIEVNGSYHKFLAG 460
S+IEV+G+ ++FLAG
Sbjct: 481 CSMIEVDGTVYEFLAG 496
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 151/330 (45%), Gaps = 50/330 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M V D Y+F LK+ G S G +HG +KTG +++Q L+ +Y S C
Sbjct: 99 MLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGC 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA-MKLIDLMPLKDVTSFNIMISGYAR 119
I+DA + ++M E+D+++WN++L A+A G M+ A ++ P+K+V S+N MI+GY+
Sbjct: 159 IEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSH 218
Query: 120 IGKIHSARYIFDKVPAKDVVSWN------------------------------------- 142
G+ +F+ + V N
Sbjct: 219 AGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFV 278
Query: 143 --SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+L+ Y+ G +EKA E+F L K++ TWN++++G + +F EM
Sbjct: 279 ATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGF 338
Query: 201 KPDYLTVTSVLSACANLGSLETGAR-----IHVYATDNGLASNPHATTALIDMYAKCGSI 255
KP+ +T VLSAC+ G L+ G +HV+ G+ ++D+ + G +
Sbjct: 339 KPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVH----GIQPTIEHYGCMVDLLGRVGLL 394
Query: 256 EQSLEVFYKSQVKDV-FCWNAMILGLALHG 284
E++ E+ K K+ W +++ HG
Sbjct: 395 EEAEELVQKMPQKEASVVWESLLGACRNHG 424
>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
Length = 686
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 159/414 (38%), Positives = 251/414 (60%), Gaps = 22/414 (5%)
Query: 54 MYGSLRC--IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN 111
M G ++C I++A K+F +MP++D+++WN+M+ A G M A +L D+ P++DV ++
Sbjct: 197 MAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWT 256
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
++SGYA+ G + A+ +FD +P K+ VSWN+++ AY ME+A E+F M +NV +
Sbjct: 257 AVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVAS 316
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG-SLETGARIHVYA 230
WNTM+TGY ++ + E +FD M + D ++ ++L+A + G S ET + ++
Sbjct: 317 WNTMLTGYAQAGMLDEARAIFDMMP----QKDAVSWAAMLAAYSQGGFSEET---LQLFK 369
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
A MY KCG++E++ F + + +D+ WN MI G A HG+G AL
Sbjct: 370 EMGRCA-----------MYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEAL 418
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
++ M + K DDIT +G+L+ACSH+GLV++G F M +DFGVT K EHY CM+DL
Sbjct: 419 EVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDL 478
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA LD A+ L++ MPFEP ++ GALL A IH++ E+G A+ + + + G
Sbjct: 479 LGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIF-ELEPENAGM 537
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YAS G+W + ++ R MM++ G+ K G S IEV H F G H
Sbjct: 538 YVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFSWIEVQNKVHTFSVGDSVH 591
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 146/263 (55%), Gaps = 24/263 (9%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V+ TA++ Y +++A +VF+ MPEK+ ++WN+M+ A+ M+ A +L D MP
Sbjct: 252 VFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPC 311
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA------------- 151
++V S+N M++GYA+ G + AR IFD +P KD VSW +++ AY+
Sbjct: 312 RNVASWNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEM 371
Query: 152 ---------GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
G ME+A F++M +++++WNTM+ GY R E +++FD M+ + KP
Sbjct: 372 GRCAMYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKP 431
Query: 203 DYLTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D +T+ VL+AC++ G +E G + + D G+ + P T +ID+ + G +++++ +
Sbjct: 432 DDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNL 491
Query: 262 FYKSQVK-DVFCWNAMILGLALH 283
+ D W A++ +H
Sbjct: 492 MKDMPFEPDSTMWGALLGASRIH 514
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 16/283 (5%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
LL G + DA +F++MP KD +++N M+ + A+ G + A DL P KD S+
Sbjct: 103 LLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSW 162
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N M++ Y R G+I AR +FD D +SWN+L+ Y ++E+A +MF +M ++V+
Sbjct: 163 NGMLAAYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQRDVV 222
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP--DYLTVTSVLSACANLGSLETGARIHV 228
+WNTMV+G+ R E LFD V P D T T+V+S A G LE R+
Sbjct: 223 SWNTMVSGHARRGDMAEARRLFD------VAPIRDVFTWTAVVSGYAQNGMLEEAKRVF- 275
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
D N + A++ Y + +E++ E+F ++V WN M+ G A G
Sbjct: 276 ---DAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDE 332
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
A + D + D +++ +L+A S G +E +LF M
Sbjct: 333 ARAIF----DMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEM 371
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 166/397 (41%), Gaps = 65/397 (16%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA ++F M + +N+ML +A+ G++ A+ +P D S+N ++
Sbjct: 51 VPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIPRPDSFSYNTLLHALGVS 110
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR +FD++P KD VS+N +I ++ N G + A F K+ ++WN M+ Y+
Sbjct: 111 SSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYI 170
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R+ E DLFD + ++ ++
Sbjct: 171 RNGRIQEARDLFDS------RTEWDAIS-------------------------------- 192
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
AL+ Y +C IE++ ++F + +DV WN M+ G A G A +L D
Sbjct: 193 -WNALMAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLF----DVA 247
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
D T+ ++S + G+++E +F M + V+ + M+ + R+++ A
Sbjct: 248 PIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVS-----WNAMMAAYVQRRMMEEA 302
Query: 361 IELIEAMPFEPTESI---------LGALLSACVIHQDLEIGDRV--AKMVCAKSN-YLSD 408
EL +AMP S G L A I + D V A M+ A S S+
Sbjct: 303 KELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSE 362
Query: 409 GELMMFAN-----LYASCGQWEEANRWRNMMNDTGIV 440
L +F +Y CG EEA+ M + IV
Sbjct: 363 ETLQLFKEMGRCAMYFKCGNMEEAHSAFEEMEERDIV 399
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 170/478 (35%), Positives = 271/478 (56%), Gaps = 16/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY---GS 57
M E GV DNY++P +L A L + +G H + +K GF ++V AL++ Y GS
Sbjct: 102 MVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGS 161
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNI 112
C D VF++ +D++ WN M++A + G + A L+D M D +
Sbjct: 162 FGCACD---VFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVS 218
Query: 113 MISGYARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++ A++G + +++ +++ N+++ Y ++E A E+F ++ K+
Sbjct: 219 LVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKD 278
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V++W +M++G +S + E + LF +M+ ++ D +T+ VLSACA G+L+ G IH+
Sbjct: 279 VLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHL 338
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ + TAL+DMYAKCGSI+ +L+VF + +V++VF WNA+I GLA+HG+G
Sbjct: 339 LIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGED 398
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A+ L +M + DD+TFI LL ACSHAGLV EG +F M+ F + ++EHYGC+V
Sbjct: 399 AISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVV 458
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DLL RAR +D A+ IE MP + + LL AC ++ +++ + V + S
Sbjct: 459 DLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRV-IELEPDSC 517
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
G +M +NLYA QW+ A + R M + GI KT G S IE+NG H+F+AG HL
Sbjct: 518 GRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQ 575
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 2/221 (0%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
LA +++G++ A ++F +M + NTM+ GY RSQ E V L+ M V D
Sbjct: 52 FLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDN 111
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T VL+ACA LG+++ G R H NG S+ ALI Y CGS + +VF +
Sbjct: 112 YTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDE 171
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMND-SCVKADDITFIGLLSACSHAGLVQE 323
S V+DV WN MI G A LL EM ++ D++T + L+ AC+ G ++
Sbjct: 172 STVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLER 231
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
G L S K+ G+ L ++D+ + ++ A E+
Sbjct: 232 GKFLHS-YSKELGLDENLRVNNAILDMYCKCDDIESAQEVF 271
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 173/471 (36%), Positives = 257/471 (54%), Gaps = 64/471 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E G+ DN+++P + KA G L G ++G +K+G
Sbjct: 123 LREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGL------------------- 163
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
E D NS++D +A G++ + ++ + MP +DV S+N++ISGY +
Sbjct: 164 ------------EFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKC 211
Query: 121 GKIHSA----RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ A R IF+ +P K V+ W S++ Y N G++++A E+F++ V++V+ W M+
Sbjct: 212 RRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMI 271
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY++ + + V LF EM+ V PD T+ ++L+
Sbjct: 272 NGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTDAV--------------------- 310
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
TALI+MYAKCG IE+SLE+F + KD W ++I GLA++G AL+L EM
Sbjct: 311 ----VGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEM 366
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ VK DDITFIG+LSACSH GLV+EG + F M + + KLEHYGC++DLLGRA
Sbjct: 367 VQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQ 426
Query: 357 LDRAIELIEAMPFEPTESIL---GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
LD A ELIE P E I+ GALLSAC H ++E+G+RVAK + + S ++
Sbjct: 427 LDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLL 486
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
AN+YAS +WE+ + R M D G+ K G S +EVNG H+FL G H
Sbjct: 487 -ANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASH 536
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 106/238 (44%), Gaps = 10/238 (4%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G + A +F + + + +N ++ + ++ + + V LF +++ + PD T V
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
A LG + G +++ + +GL + + +L+DMYA+ G ++ +VF + +DV
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199
Query: 272 CWNAMILG-LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
WN +I G + Y A ND +K I + ++S + G + E ELF R
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKT-VICWTSMVSGYVNCGQLDEARELFER 258
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVI 385
R + + M++ + D A+ L M + P L ALL+ V+
Sbjct: 259 -----SPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTDAVV 311
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 175/503 (34%), Positives = 271/503 (53%), Gaps = 40/503 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ +G D +SF +LKA +S+ G+ LHG K +V+T + MY S
Sbjct: 102 IRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGR 161
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM----ISG 116
I+ A VF++M +D++ WN+M++ + G +D A KL + M +V ++ +S
Sbjct: 162 INYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSA 221
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNV--- 169
R G + R I++ + DV +L+ Y AG M+ A E F+KM V+N+
Sbjct: 222 CGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVS 281
Query: 170 ----------------------------ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+ W TM++ Y+ S E + +F+EM +K
Sbjct: 282 TAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK 341
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +++ SV+SACANLG L+ +H NGL S ALI+MYAKCG ++ + +V
Sbjct: 342 PDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDV 401
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K ++V W++MI L++HG AL L M V+ +++TF+G+L CSH+GLV
Sbjct: 402 FEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLV 461
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+EG ++F+ M ++ +T KLEHYGCMVDL GRA LL A+E+IE+MP I G+L+S
Sbjct: 462 EEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMS 521
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH +LE+G AK + + DG L++ +N+YA +WE+ R +M + + K
Sbjct: 522 ACRIHGELELGKFAAKRI-LELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFK 580
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
G S I+ NG H+FL G H
Sbjct: 581 EKGLSRIDQNGKSHEFLIGDKRH 603
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
I +N + RS + + ++ + D + +L A + + +L G +H
Sbjct: 77 IVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGV 136
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
A +P T +DMYA CG I + VF + +DV WN MI G A
Sbjct: 137 AFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEA 196
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAG 319
KL EM DS V D++ ++SAC G
Sbjct: 197 FKLFEEMKDSNVMPDEMILCNIVSACGRTG 226
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 249/447 (55%), Gaps = 32/447 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
AL+ Y + +A ++F++MP +D+++WN M+ +A G M A +L D P++DV
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 256
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++ ++SGYA+ G + AR +FD +P ++ VSWN+++ AY M++A E+F M +N
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN 316
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKA---------------GNVKPDYLTV------ 207
V +WNTM+TGY ++ + E +FD M G + L +
Sbjct: 317 VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376
Query: 208 ----------TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
VLS CA++ +LE G ++H G AL+ MY KCG++E
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMED 436
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ F + + +DV WN MI G A HG+G AL++ M + K DDIT +G+L+ACSH
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 496
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+GLV++G F M DFGVT K EHY CM+DLLGRA L A +L++ MPFEP ++ G
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
ALL A IH++ E+G A+ + + + G ++ +N+YAS G+W +A + R MM +
Sbjct: 557 ALLGASRIHRNPELGRSAAEKIF-ELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEER 615
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S IEV H F AG H
Sbjct: 616 GVKKVPGFSWIEVQNKVHTFSAGDCVH 642
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 134/289 (46%), Gaps = 47/289 (16%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A +F E D+I+WN+++ + G+M A +L D MP +DV S+NIM+SGYAR
Sbjct: 178 VEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 237
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD P +DV +W +++ Y G +E+A +F M +N ++WN MV Y+
Sbjct: 238 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYI 297
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ ++ E +LF+ M C N+ S T
Sbjct: 298 QRRMMDEAKELFNMMP-----------------CRNVASWNT------------------ 322
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
++ YA+ G +E++ VF KD W AM+ + G L+L EM
Sbjct: 323 ----MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 378
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMV 348
+ F +LS C+ ++ G +L R+ +GV GC V
Sbjct: 379 EWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFV 420
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 150/316 (47%), Gaps = 43/316 (13%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A+L Y + + A +F +P D ++N++L A A + A L D MP++D
Sbjct: 73 NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV 132
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT------------------- 149
++N+MIS +A G + AR+ FD P KD VSWN ++ AY
Sbjct: 133 TYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWD 192
Query: 150 ----NA--------GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
NA G+M +A E+F +M ++V++WN MV+GY R +E LFD A
Sbjct: 193 VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD---A 249
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V+ D T T+V+S A G LE R+ D N + A++ Y + +++
Sbjct: 250 APVR-DVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDE 304
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ E+F ++V WN M+ G A G L+ + D+ + D +++ +L+A S
Sbjct: 305 AKELFNMMPCRNVASWNTMLTGYAQAGM----LEEAKAVFDTMPQKDAVSWAAMLAAYSQ 360
Query: 318 AGLVQEGCELFSRMEK 333
G +E +LF M +
Sbjct: 361 GGCSEETLQLFIEMGR 376
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 147/308 (47%), Gaps = 17/308 (5%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA ++F MP + +N+ML +++ G++ A L +P D S+N ++ A
Sbjct: 54 VADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVS 113
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR +FD++P +D V++N +I ++ N G + A F K+ ++WN M+ Y+
Sbjct: 114 SSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYV 173
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R+ E LF+ + D ++ +++S G + + D +
Sbjct: 174 RNGRVEEARGLFN----SRTEWDVISWNALMSGYVQWGKMSEARELF----DRMPGRDVV 225
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ ++ YA+ G + ++ +F + V+DVF W A++ G A +G A ++ D+
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAM 281
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ + +++ +++A ++ E ELF+ M R + + M+ +A +L+ A
Sbjct: 282 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMP-----CRNVASWNTMLTGYAQAGMLEEA 336
Query: 361 IELIEAMP 368
+ + MP
Sbjct: 337 KAVFDTMP 344
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 161/364 (44%), Gaps = 30/364 (8%)
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
E ++I N + A G++ A +L MP + +++N M++GY+ G++ A +F
Sbjct: 35 EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P D S+N+L+ A + + A +F +M V++ +T+N M++ + L F
Sbjct: 95 IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF 154
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
D + D ++ +L+A G +E + T+ + S AL+ Y +
Sbjct: 155 DLAP----EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVIS----WNALMSGYVQW 206
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G + ++ E+F + +DV WN M+ G A G A +L D+ D T+ ++
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVV 262
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
S + G+++E +F M + V+ + MV + R++D A EL MP
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMMPCRNV 317
Query: 373 ESI---------LGALLSACVIHQDLEIGDRV--AKMVCAKSN-YLSDGELMMFANLYAS 420
S G L A + + D V A M+ A S S+ L +F +
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM-GR 376
Query: 421 CGQW 424
CG+W
Sbjct: 377 CGEW 380
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + +F +L +++ G+ LHG+ I+ G+ +V ALL MY
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 433
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
++DA FE+M E+D+++WN+M+ +A G A+++ D+M +I + G
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/450 (36%), Positives = 253/450 (56%), Gaps = 30/450 (6%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TA++ Y I DA K+F +MP K++++WN+M+D +A G++D AM L + MP
Sbjct: 129 NVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMP 188
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW---------------------- 141
++V S+N ++S A+ G+I AR +FD++P +DV+SW
Sbjct: 189 ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERD 248
Query: 142 ----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
N++I G++ +A ++F +M KNVI+W TM+TG ++ E + +F M +
Sbjct: 249 LPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLS 308
Query: 198 GN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
N KP+ T SVL AC+NL L G ++H + + +ALI+MY+KCG +
Sbjct: 309 TNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELG 368
Query: 257 QSLEVFYK--SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ ++F + +D+ WN +I A HGYG A+ EM S K DD+T++GLLSA
Sbjct: 369 TARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSA 428
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
CSHAGLV+EG + F + KD + + +HY C+VDL GRA L A IE + +P+
Sbjct: 429 CSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSAR 488
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
+ GALL+ C +H +++IG + AK + + + G ++ +N+YAS G+W EA R R M
Sbjct: 489 VWGALLAGCNVHANVKIGKQAAKKLL-EVEPENAGTYLLLSNIYASTGKWREAARVRLKM 547
Query: 435 NDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
D G+ K G S IEV H F+ G H
Sbjct: 548 KDKGLKKQPGCSWIEVGNRVHVFVVGDKSH 577
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 149/289 (51%), Gaps = 27/289 (9%)
Query: 71 MPEKD------IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+P KD + N M+ + G++ A +L D M DV ++ +ISGY + G I
Sbjct: 56 IPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIE 115
Query: 125 SARYIFDKVPA-KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
AR +FD+V A K+VV+W +++ Y + ++ A ++F +M KNV++WNTM+ GY ++
Sbjct: 116 EARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNG 175
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
+ LF++M NV + TV S+L+ C G +E R+ + + S T
Sbjct: 176 RIDSAMYLFEKMPERNV-VSWNTVMSMLAQC---GRIEEARRLFDRMPERDVIS----WT 227
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
A+I G ++++L++F + +D+ WN MI GL +G A KL EM K
Sbjct: 228 AMI-----AGLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEM----PKK 278
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+ I++ +++ C G +E ++FSRM G + G V +LG
Sbjct: 279 NVISWTTMITGCVQEGESEEALKIFSRMLSTNGAK---PNQGTFVSVLG 324
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 103/250 (41%), Gaps = 19/250 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + +F +L A L+ G +H KT + +V +AL+ MY + A
Sbjct: 311 GAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTA 370
Query: 65 FKVFEK--MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYA 118
K+F+ ++D+++WN ++ A+A G A+ M D ++ ++S +
Sbjct: 371 RKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS 430
Query: 119 RIGKIHSARYIFDKVPAKDVV-----SWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITW 172
G + FD++ + + L+ AG +++A +++ K + W
Sbjct: 431 HAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVW 490
Query: 173 NTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++ G + ++ + E++ N YL ++++ A+ G AR+ +
Sbjct: 491 GALLAGCNVHANVKIGKQAAKKLLEVEPENAGT-YLLLSNIY---ASTGKWREAARVRLK 546
Query: 230 ATDNGLASNP 239
D GL P
Sbjct: 547 MKDKGLKKQP 556
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 249/447 (55%), Gaps = 32/447 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
AL+ Y + +A ++F++MP +D+++WN M+ +A G M A +L D P++DV
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 256
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++ ++SGYA+ G + AR +FD +P ++ VSWN+++ AY M++A E+F M +N
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN 316
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKA---------------GNVKPDYLTV------ 207
V +WNTM+TGY ++ + E +FD M G + L +
Sbjct: 317 VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376
Query: 208 ----------TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
VLS CA++ +LE G ++H G AL+ MY KCG++E
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMED 436
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ F + + +DV WN MI G A HG+G AL++ M + K DDIT +G+L+ACSH
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 496
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+GLV++G F M DFGVT K EHY CM+DLLGRA L A +L++ MPFEP ++ G
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
ALL A IH++ E+G A+ + + + G ++ +N+YAS G+W +A + R MM +
Sbjct: 557 ALLGASRIHRNPELGRSAAEKIF-ELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEER 615
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S IEV H F AG H
Sbjct: 616 GVKKVPGFSWIEVQNKVHTFSAGDCVH 642
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 134/289 (46%), Gaps = 47/289 (16%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A +F E D+I+WN+++ + G+M A +L D MP +DV S+NIM+SGYAR
Sbjct: 178 VEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 237
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD P +DV +W +++ Y G +E+A +F M +N ++WN MV Y+
Sbjct: 238 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYI 297
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ ++ E +LF+ M C N+ S T
Sbjct: 298 QRRMMDEAKELFNMMP-----------------CRNVASWNT------------------ 322
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
++ YA+ G +E++ VF KD W AM+ + G L+L EM
Sbjct: 323 ----MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 378
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMV 348
+ F +LS C+ ++ G +L R+ +GV GC V
Sbjct: 379 EWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFV 420
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 150/316 (47%), Gaps = 43/316 (13%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A+L Y + + A +F +P D ++N++L A A + A L D MP++D
Sbjct: 73 NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV 132
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT------------------- 149
++N+MIS +A G + AR+ FD P KD VSWN ++ AY
Sbjct: 133 TYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWD 192
Query: 150 ----NA--------GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
NA G+M +A E+F +M ++V++WN MV+GY R +E LFD A
Sbjct: 193 VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD---A 249
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V+ D T T+V+S A G LE R+ D N + A++ Y + +++
Sbjct: 250 APVR-DVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDE 304
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ E+F ++V WN M+ G A G L+ + D+ + D +++ +L+A S
Sbjct: 305 AKELFNMMPCRNVASWNTMLTGYAQAGM----LEEAKAVFDTMPQKDAVSWAAMLAAYSQ 360
Query: 318 AGLVQEGCELFSRMEK 333
G +E +LF M +
Sbjct: 361 GGCSEETLQLFIEMGR 376
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 147/308 (47%), Gaps = 17/308 (5%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA ++F MP + +N+ML +++ G++ A L +P D S+N ++ A
Sbjct: 54 VADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVS 113
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR +FD++P +D V++N +I ++ N G + A F K+ ++WN M+ Y+
Sbjct: 114 SSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYV 173
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R+ E LF+ + D ++ +++S G + + D +
Sbjct: 174 RNGRVEEARGLFN----SRTEWDVISWNALMSGYVQWGKMSEARELF----DRMPGRDVV 225
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ ++ YA+ G + ++ +F + V+DVF W A++ G A +G A ++ D+
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAM 281
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ + +++ +++A ++ E ELF+ M R + + M+ +A +L+ A
Sbjct: 282 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMP-----CRNVASWNTMLTGYAQAGMLEEA 336
Query: 361 IELIEAMP 368
+ + MP
Sbjct: 337 KAVFDTMP 344
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 161/364 (44%), Gaps = 30/364 (8%)
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
E ++I N + A G++ A +L MP + +++N M++GY+ G++ A +F
Sbjct: 35 EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P D S+N+L+ A + + A +F +M V++ +T+N M++ + L F
Sbjct: 95 IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF 154
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
D + D ++ +L+A G +E + T+ + S AL+ Y +
Sbjct: 155 DLAP----EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVIS----WNALMSGYVQW 206
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G + ++ E+F + +DV WN M+ G A G A +L D+ D T+ ++
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVV 262
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
S + G+++E +F M + V+ + MV + R++D A EL MP
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMMPCRNV 317
Query: 373 ESI---------LGALLSACVIHQDLEIGDRV--AKMVCAKSN-YLSDGELMMFANLYAS 420
S G L A + + D V A M+ A S S+ L +F +
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM-GR 376
Query: 421 CGQW 424
CG+W
Sbjct: 377 CGEW 380
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + +F +L +++ G+ LHG+ I+ G+ +V ALL MY
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 433
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
++DA FE+M E+D+++WN+M+ +A G A+++ D+M +I + G
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 257/448 (57%), Gaps = 38/448 (8%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D +FP +L+A + + G+ +H +K G +V+ AL+ M+
Sbjct: 108 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMH---------- 157
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
ASCG + A L D +D +++ MI+G AR G I +
Sbjct: 158 ---------------------ASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGA 196
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD+ P KD+VSWN +I AY G+M A E+F ++ ++V++WN M++GY+R +
Sbjct: 197 ARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSH 256
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD----NGLASNPHA 241
+ ++LF++M+ KPD +T+ S+LSACA+ G L+ G R+H +D NG
Sbjct: 257 LHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV--L 314
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
ALIDMYAKCGS++ + EVF+ + KDV WN+++ GLALHG+ ++ + +M V
Sbjct: 315 GNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKV 374
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
+ D+ITF+ +L ACSH G+V +G E F+ M+ + V ++HYGCMVD+LGRA LL A
Sbjct: 375 RPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAF 434
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
E I+ M EP I LLSAC +H ++E+ + + N S G+ ++ +N+YAS
Sbjct: 435 EFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDES-GDYVLLSNIYASV 493
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIE 449
G+W + + R +M+D+G+ K AG + ++
Sbjct: 494 GEWFGSEKMRKLMDDSGVNKEAGQTFVD 521
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 151/357 (42%), Gaps = 51/357 (14%)
Query: 85 AFASCGQMDHAMKLIDLMPLK----DVTSFNIMI--SGYARIGKIHSARYIFDKVPAKDV 138
A+ C + H ++ +M L+ D + ++ S A G I A +FD++P D
Sbjct: 14 AWRRCRSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDR 73
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+N+LI + A ++ +ML +
Sbjct: 74 FMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGG--------------------------- 106
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
V+PD LT VL AC +G+ +TG ++H + G S+ ALI M+A CG++ +
Sbjct: 107 GVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIA 166
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+F +D W+AMI G A G AA L D C D +++ +++A +
Sbjct: 167 AALFDGRAREDAVAWSAMITGCARRGDIGAARDLF----DECPVKDLVSWNVMITAYAKR 222
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF---EPTESI 375
G + ELF ++ + R + + M+ R A+EL E M +P
Sbjct: 223 GDMALARELFDQVPE-----RDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVT 277
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN----LYASCGQWEEAN 428
+ +LLSAC DL++G R+ + + +G ++ N +YA CG + A+
Sbjct: 278 MLSLLSACADSGDLDVGQRLHSSL--SDMFSRNGFPVVLGNALIDMYAKCGSMKSAH 332
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/384 (41%), Positives = 234/384 (60%), Gaps = 3/384 (0%)
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
S L AF Q+ HA ++ L DV + N +I+ YA G A +FD++P D VS
Sbjct: 126 SNLSAFEETTQI-HA-QITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVS 183
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
WNS+I Y AG+M+ A +F+KM KN I+W TM++GY+++ + E + LF EM+ +V
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD +++ + LSACA LG+LE G IH Y + + LIDMYAKCG +E++LE
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALE 303
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF + K V W A+I G A HG+G A+ EM +K + ITF +L+ACS+ GL
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V+EG +F ME+D+ + +EHYGC+VDLLGRA LLD A I+ MP +P I GALL
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
AC IH+++E+G+ + +++ A Y G + AN++A +W++A R +M + G+
Sbjct: 424 KACRIHKNIELGEEIGEILIAIDPY-HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVA 482
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S I + G+ H+FLAG H
Sbjct: 483 KVPGCSTISLEGTTHEFLAGDRSH 506
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 137/314 (43%), Gaps = 41/314 (13%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y+FP LLKA LS+ +H Q K G+ VY +L+ Y A +F++
Sbjct: 116 YTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDR 175
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
+PE D ++WNS++ + G+MD A+ L M K+ S+ MISGY + A +F
Sbjct: 176 IPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLF 235
Query: 131 DKVPAKDVVSWN---------------------------------------SLILAYTNA 151
++ DV N LI Y
Sbjct: 236 HEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKC 295
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
GEME+A E+FK + K+V W +++GY E + F EM+ +KP+ +T T+VL
Sbjct: 296 GEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVL 355
Query: 212 SACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-D 269
+AC+ G +E G I + D L ++D+ + G ++++ + +K +
Sbjct: 356 TACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPN 415
Query: 270 VFCWNAMILGLALH 283
W A++ +H
Sbjct: 416 AVIWGALLKACRIH 429
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 35/281 (12%)
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
+ + S ++ T++ + A +F + WN M+ G+ S + L+ M
Sbjct: 49 ITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLC 108
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA------- 250
+ + T S+L AC+NL + E +IH T G ++ +A +LI+ YA
Sbjct: 109 SSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKL 168
Query: 251 ------------------------KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
K G ++ +L +F K K+ W MI G
Sbjct: 169 AHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMN 228
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL+L EM +S V+ D+++ LSAC+ G +++G + S + K R GC
Sbjct: 229 KEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNK--TRIRMDSVLGC 286
Query: 347 -MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
++D+ + ++ A+E+ + + + ++ AL+S H
Sbjct: 287 VLIDMYAKCGEMEEALEVFKNIKKKSVQA-WTALISGYAYH 326
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 81/188 (43%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V DN S L A L + G +H KT + L+ MY
Sbjct: 238 MQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGE 297
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-KLIDLMPL---KDVTSFNIMISG 116
+++A +VF+ + +K + AW +++ +A G A+ K +++ + +V +F +++
Sbjct: 298 MEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTA 357
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + + IF D + + ++ AG +++A ++M +K N +
Sbjct: 358 CSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAV 417
Query: 171 TWNTMVTG 178
W ++
Sbjct: 418 IWGALLKA 425
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS---IEQSLEVFYKS 265
S L C+ L+ +IH GL + +A T + S + + VF
Sbjct: 19 SCLQRCSKQEELK---QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGF 75
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
D F WN MI G + +L L M S + TF LL ACS+ +E
Sbjct: 76 DRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETT 135
Query: 326 ELFSRMEK 333
++ +++ K
Sbjct: 136 QIHAQITK 143
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 249/447 (55%), Gaps = 32/447 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
AL+ Y + +A ++F++MP +D+++WN M+ +A G M A +L D P++DV
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 256
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++ ++SGYA+ G + AR +FD +P ++ VSWN+++ AY M++A E+F M +N
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN 316
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKA---------------GNVKPDYLTV------ 207
V +WNTM+TGY ++ + E +FD M G + L +
Sbjct: 317 VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376
Query: 208 ----------TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
VLS CA++ +LE G ++H G AL+ MY KCG++E
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMED 436
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ F + + +DV WN MI G A HG+G AL++ M + K DDIT +G+L+ACSH
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 496
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+GLV++G F M DFGVT K EHY CM+DLLGRA L A +L++ MPFEP ++ G
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
ALL A IH++ E+G A+ + + + G ++ +N+YAS G+W +A + R MM +
Sbjct: 557 ALLGASRIHRNPELGRSAAEKIF-ELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEER 615
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S IEV H F AG H
Sbjct: 616 GVKKVPGFSWIEVQNKVHTFSAGDCVH 642
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 133/289 (46%), Gaps = 47/289 (16%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A +F E D I+WN+++ + G+M A +L D MP +DV S+NIM+SGYAR
Sbjct: 178 VEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 237
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD P +DV +W +++ Y G +E+A +F M +N ++WN MV Y+
Sbjct: 238 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYI 297
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ ++ E +LF+ M C N+ S T
Sbjct: 298 QRRMMDEAKELFNMMP-----------------CRNVASWNT------------------ 322
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
++ YA+ G +E++ VF KD W AM+ + G L+L EM
Sbjct: 323 ----MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 378
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMV 348
+ F +LS C+ ++ G +L R+ +GV GC V
Sbjct: 379 EWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFV 420
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 150/316 (47%), Gaps = 43/316 (13%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A+L Y + + A +F +P D ++N++L A A + A L D MP++D
Sbjct: 73 NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV 132
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT------------------- 149
++N+MIS +A G + AR+ FD P KD VSWN ++ AY
Sbjct: 133 TYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWD 192
Query: 150 ----NA--------GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
NA G+M +A E+F +M ++V++WN MV+GY R +E LFD A
Sbjct: 193 AISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD---A 249
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V+ D T T+V+S A G LE R+ D N + A++ Y + +++
Sbjct: 250 APVR-DVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDE 304
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ E+F ++V WN M+ G A G L+ + D+ + D +++ +L+A S
Sbjct: 305 AKELFNMMPCRNVASWNTMLTGYAQAGM----LEEAKAVFDTMPQKDAVSWAAMLAAYSQ 360
Query: 318 AGLVQEGCELFSRMEK 333
G +E +LF M +
Sbjct: 361 GGCSEETLQLFIEMGR 376
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 147/308 (47%), Gaps = 17/308 (5%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA ++F MP + +N+ML +++ G++ A L +P D S+N ++ A
Sbjct: 54 VADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVS 113
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR +FD++P +D V++N +I ++ N G + A F K+ ++WN M+ Y+
Sbjct: 114 SSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYV 173
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R+ E LF+ + D ++ +++S G + + D +
Sbjct: 174 RNGRVEEARGLFN----SRTEWDAISWNALMSGYVQWGKMSEARELF----DRMPGRDVV 225
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ ++ YA+ G + ++ +F + V+DVF W A++ G A +G A ++ D+
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAM 281
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ + +++ +++A ++ E ELF+ M R + + M+ +A +L+ A
Sbjct: 282 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMP-----CRNVASWNTMLTGYAQAGMLEEA 336
Query: 361 IELIEAMP 368
+ + MP
Sbjct: 337 KAVFDTMP 344
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 163/365 (44%), Gaps = 32/365 (8%)
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
E ++I N + A G++ A +L MP + +++N M++GY+ G++ A +F
Sbjct: 35 EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P D S+N+L+ A + + A +F +M V++ +T+N M++ + L F
Sbjct: 95 IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF 154
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAK 251
D + D ++ +L+A G +E + T+ + ++ N AL+ Y +
Sbjct: 155 DLAP----EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWN-----ALMSGYVQ 205
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
G + ++ E+F + +DV WN M+ G A G A +L D+ D T+ +
Sbjct: 206 WGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAV 261
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP 371
+S + G+++E +F M + V+ + MV + R++D A EL MP
Sbjct: 262 VSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMMPCRN 316
Query: 372 TESI---------LGALLSACVIHQDLEIGDRV--AKMVCAKSN-YLSDGELMMFANLYA 419
S G L A + + D V A M+ A S S+ L +F +
Sbjct: 317 VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM-G 375
Query: 420 SCGQW 424
CG+W
Sbjct: 376 RCGEW 380
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + +F +L +++ G+ LHG+ I+ G+ +V ALL MY
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 433
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
++DA FE+M E+D+++WN+M+ +A G A+++ D+M +I + G
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/466 (35%), Positives = 265/466 (56%), Gaps = 43/466 (9%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLM--------LHGQTIKTGFCG-HVYVQTALLKMYGSLR 59
+++S L ++A+ LS+S + LH + +K+GF ++V+TAL+
Sbjct: 30 NSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALV------- 82
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+A+A G+ D A D P +DV N+M++ Y
Sbjct: 83 ------------------------EAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVT 118
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G++ AR +FD + +D+VSWN++I Y GE++ A E+F M ++ +W++M++ Y
Sbjct: 119 RGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAY 178
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ + + ++L+ EM+A V PD T+ SVLSAC+++G+L GA +H + NG+ +
Sbjct: 179 TKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDV 238
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TALIDMYAKCG IE S+ VF+ VKDV W++MI+GLA HG+G+ AL L M
Sbjct: 239 KLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSE 298
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
++ +++TFIG+L +C+H GLV +G + FS M GVT K++HYGCMVDLLGR+ ++
Sbjct: 299 GLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEE 358
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDR-VAKMVCAKSNYLSDGELMMFANLY 418
A +LI MPFEP I ALL AC I++++E+ + +AK+ + +DG ++ +N+Y
Sbjct: 359 AKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPH--ADGHYVLLSNIY 416
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
A WE R + I + G S IE + H+F++G H
Sbjct: 417 AQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSH 462
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 13/201 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V+ D + +L A + + +G +H G V + TAL+ MY
Sbjct: 194 MRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGD 253
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
I+++ +VF MP KD++ W+SM+ A+ G A+ L M +VT ++IS
Sbjct: 254 IENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLIS 313
Query: 116 ----GYARIGKIH-SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
G GK + S+ + V K V + ++ +G +E+A ++ + M + +
Sbjct: 314 CTHLGLVSDGKKYFSSMSVVHGVTPK-VQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDA 372
Query: 170 ITWNTMVTGYLRSQLYIEVVD 190
+ W ++ G R +EV +
Sbjct: 373 VIWRALL-GACRIYKNVEVAE 392
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 172/498 (34%), Positives = 273/498 (54%), Gaps = 43/498 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G++ DN++ P++LK+ G L G +HG +KTG YV +L+ MY +L ++
Sbjct: 25 GLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTGLESDSYVCNSLMGMYAALGKMEIT 84
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--------------------- 103
KVF++MPE+D+++WN ++ ++ G+ + A+ + M
Sbjct: 85 HKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSV 144
Query: 104 LKD-----------VTSF-------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
LK+ VT F N ++ + + G + AR IFD + K+V W S++
Sbjct: 145 LKNLEIGERIYRYVVTEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMV 204
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y + G ++A E+F++ VK+V+ W M+ GY++ + E ++LF M+ ++PD
Sbjct: 205 SGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNF 264
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ S+L+ CA G+LE G IH Y +N + + TAL+DMYAKCG IE +L VFY+
Sbjct: 265 VLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEM 324
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ +D W ++I GLA +G AL L EM + V+ DDITF+ +L+ACSH G V EG
Sbjct: 325 KERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTACSHGGFVAEGR 384
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG---ALLSA 382
+F M + + K EHY C++DLL RA LLD A ELI+ M E ++++ +LLSA
Sbjct: 385 RIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKMHGERDKTLVPVYCSLLSA 444
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
+ +++I +RVA+ + K + A++YAS +WE+ R M D GI K
Sbjct: 445 ARNYGNVKIAERVAEKL-EKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKF 503
Query: 443 AGSSVIEVNGSYHKFLAG 460
G S IEV+G H+F+ G
Sbjct: 504 PGCSSIEVDGVSHEFIVG 521
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 41/303 (13%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
+E + AD + L A +L + IG ++ + + T F V AL+ M+ C+
Sbjct: 124 RESNLKADEGTIVSTLSACSVLKNLEIGERIY-RYVVTEFEMSVRTGNALVDMFCKCGCL 182
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
D A +F+ M +K++ W SM+ + S G+ D A +L + P+KDV + M++GY +
Sbjct: 183 DKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFN 242
Query: 122 K----------IHSAR-----------------------------YIFDKVPAKDVVSWN 142
+ + +AR YI + D V
Sbjct: 243 RFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGT 302
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+L+ Y G +E A +F +M ++ +W +++ G + + +DL+ EM+ V+
Sbjct: 303 ALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRL 362
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEV 261
D +T +VL+AC++ G + G RI T+ + + + LID+ + G ++++ E+
Sbjct: 363 DDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEEL 422
Query: 262 FYK 264
K
Sbjct: 423 IDK 425
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 101/194 (52%), Gaps = 3/194 (1%)
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ S+ + +V+ LF E++ + PD T+ VL + L + G ++H YA G
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L S+ + +L+ MYA G +E + +VF + +DV WN +I HG A+ +
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 295 EMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
M+ +S +KAD+ T + LSACS ++ G ++ + +F ++ + + +VD+ +
Sbjct: 121 RMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRTGN--ALVDMFCK 178
Query: 354 ARLLDRAIELIEAM 367
LD+A + ++M
Sbjct: 179 CGCLDKARAIFDSM 192
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 109/276 (39%), Gaps = 37/276 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + DN+ LL + G +HG + V TAL+ MY C
Sbjct: 254 MQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGC 313
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A VF +M E+D +W S++ A+ G A+ L
Sbjct: 314 IETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLY--------------------- 352
Query: 121 GKIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT-----WNT 174
Y + V + D +++ +++ A ++ G + + +F M ++ I ++
Sbjct: 353 -------YEMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSC 405
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ R+ L E +L D+M K S+LSA N G+++ R+ +
Sbjct: 406 LIDLLCRAGLLDEAEELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERV-AEKLEKV 464
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
S+ A T L +YA E V + ++KD+
Sbjct: 465 EVSDSSAHTLLASVYASANRWEDVTNV--RRKMKDL 498
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 163/435 (37%), Positives = 243/435 (55%), Gaps = 32/435 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA +F+KMP +D I+WN+M+ +A G + A +L D P +DV ++ M+SGY +
Sbjct: 220 LGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY- 179
G + A+ FD++P K+ VS+N++I Y +M+ A E+F+ M +N+ +WNTM+TGY
Sbjct: 280 GMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYG 339
Query: 180 ------------------------------LRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
+S Y E +++F E+K + T
Sbjct: 340 QIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGC 399
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
LS CA++ +LE G +IH A G + AL+ MY KCGSI+++ + F + KD
Sbjct: 400 ALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKD 459
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V WN M+ G A HG+G AL + M + VK D+IT +G+LSACSH GL+ G E F
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFY 519
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M KD+GV +HY CM+DLLGRA L+ A +LI MPF+P + GALL A IH +
Sbjct: 520 SMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNT 579
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E+G++ A+MV K + G ++ +NLYA+ G+W +A++ R+ M D G+ K G S +E
Sbjct: 580 ELGEKAAEMVF-KMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638
Query: 450 VNGSYHKFLAGGIGH 464
V H F G H
Sbjct: 639 VQNKIHTFSVGDCSH 653
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 140/279 (50%), Gaps = 8/279 (2%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
+LL Y +D+A +VF+ MPEK+ I+WN +L A+ G+++ A L + D+
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N ++ G+ R K+ AR++FDK+P +D +SWN++I Y G + +A +F + ++
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRD 265
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW MV+GY+++ + E FDEM N ++ ++++ ++ +
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE----VSYNAMIAGYVQTKKMDIARELF- 320
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
++ N + +I Y + G I Q+ + F +D W A+I G A G+
Sbjct: 321 ---ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEE 377
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
AL + E+ + TF LS C+ ++ G ++
Sbjct: 378 ALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 44/314 (14%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A +F++MPE+D+ +WN ML + ++ A +L DLMP KDV S+N ++SGYA+ G +
Sbjct: 99 ARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYV 158
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA-------------------------- 157
AR +FD +P K+ +SWN L+ AY + G +E+A
Sbjct: 159 DEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKK 218
Query: 158 --GE---MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
G+ +F KM V++ I+WNTM++GY + + LFDE +V T T+++S
Sbjct: 219 KLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVS 274
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
G L+ D N + A+I Y + ++ + E+F +++
Sbjct: 275 GYVQNGMLDEAKTFF----DEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISS 330
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WN MI G G A K D + D +++ +++ + +G +E +F ++
Sbjct: 331 WNTMITGYGQIGDIAQARKFF----DMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK 386
Query: 333 KDFGVTRKLEHYGC 346
+D G + +GC
Sbjct: 387 QD-GESLNRATFGC 399
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 17/299 (5%)
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
++ + DI+ WN + G D A+ + + MP + S+N MISGY R K + AR +
Sbjct: 43 RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FD++P +D+ SWN ++ Y + A +F M K+V++WN++++GY ++ E
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
++FD M N ++ +L+A + G +E + +D L S L+ +
Sbjct: 163 EVFDNMPEKNS----ISWNGLLAAYVHNGRIEEACLLFESKSDWDLIS----WNCLMGGF 214
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
+ + + +F K V+D WN MI G A G A +L D D T+
Sbjct: 215 VRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF----DESPTRDVFTWT 270
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++S G++ E F M + V+ Y M+ + + +D A EL E+MP
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARELFESMP 324
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 120/254 (47%), Gaps = 12/254 (4%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-- 99
C ++ ++ YG + I A K F+ MP++D ++W +++ +A G + A+ +
Sbjct: 325 CRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVE 384
Query: 100 ---DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAG 152
D L T F +S A I + + I + N+L+ Y G
Sbjct: 385 IKQDGESLNRAT-FGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCG 443
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+++A + F+ + K+V++WNTM+ GY R + + +F+ MK VKPD +T+ VLS
Sbjct: 444 SIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503
Query: 213 ACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-V 270
AC++ G L+ G + D G+ T +ID+ + G +E++ ++ +
Sbjct: 504 ACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563
Query: 271 FCWNAMILGLALHG 284
W A++ +HG
Sbjct: 564 ASWGALLGASRIHG 577
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 100/250 (40%), Gaps = 46/250 (18%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ G + +F L +++ +G +HGQ +K G+ +V ALL MY
Sbjct: 385 IKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGS 444
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----------- 109
ID+A FE + EKD+++WN+ML +A G A+ + + M V
Sbjct: 445 IDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSA 504
Query: 110 -----------------------------FNIMISGYARIGKIHSARYIFDKVPAKD-VV 139
+ MI R G++ A+ + +P +
Sbjct: 505 CSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAA 564
Query: 140 SWNSLILA---YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
SW +L+ A + N EKA EM KM +N + + Y S +++ + +M+
Sbjct: 565 SWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMR 624
Query: 197 AGNVK--PDY 204
V+ P Y
Sbjct: 625 DIGVQKVPGY 634
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 39/144 (27%)
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
+ GL+ G E F M +++ VT +HY CM+DLLGR +DR E
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGR---VDRLEE-------------- 818
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
GALL A IH + E+G++ A+M + G N + M D
Sbjct: 819 GALLGASRIHGNTELGEKAAQM------FFKMGP----------------QNSGISKMRD 856
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAG 460
G+ K G S EV H F G
Sbjct: 857 VGVQKVPGYSWFEVQNKIHTFSVG 880
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 268/473 (56%), Gaps = 10/473 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSC-IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
M++ G DN++FP +LKA L +GL LH IKTGF V+V+T L+ +Y
Sbjct: 92 MRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNG 151
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL----IDLMPLKDVTSFNIMIS 115
+ DA KVF+++PEK++++W +++ + G A+ L +++ D + ++
Sbjct: 152 FLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILY 211
Query: 116 GYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+R+G + S R Y+ + +V SL+ Y G ME+A +F M+ K+V+
Sbjct: 212 ACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVC 271
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W+ ++ GY + + E +D+F EM+ NV+PD + V SAC+ LG+LE G
Sbjct: 272 WSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMD 331
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ SNP TALID YAKCGS+ Q+ EVF + KD +NA+I GLA+ G+ AA
Sbjct: 332 GDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFG 391
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+ G+M ++ D TF+GLL C+HAGLV +G FS M F VT +EHYGCMVDL
Sbjct: 392 VFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQ 451
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
RA LL A +LI +MP E + GALL C +H+D ++ + V K + + S G
Sbjct: 452 ARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNS-GHY 510
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+Y++ +W+EA + R+ +N G+ K G S +EV+G H+FL G H
Sbjct: 511 VLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSH 563
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 1/190 (0%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+D N L+ + + + A +F + N+ +NT++ G + + + + V ++ M
Sbjct: 33 QDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASM 92
Query: 196 KAGNVKPDYLTVTSVLSACANLGS-LETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
+ PD T VL AC L G +H G + T L+ +Y+K G
Sbjct: 93 RQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGF 152
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ + +VF + K+V W A+I G G AL L + + ++ D T + +L A
Sbjct: 153 LTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYA 212
Query: 315 CSHAGLVQEG 324
CS G + G
Sbjct: 213 CSRVGDLASG 222
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 178/460 (38%), Positives = 258/460 (56%), Gaps = 29/460 (6%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + ++ P +LKA G S+ +++HG IK G V+VQ AL+ +Y I A
Sbjct: 83 GLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCA 142
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
K+F+ + +K +I D+ N ++ YA+ G +H
Sbjct: 143 RKLFDDITDKTLI----------------------------DIIVRNALVDMYAKCGNLH 174
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SA+ IFD+ K+VVSW S+I AY G +E A ++F +M KNV++WN+M++ YLR
Sbjct: 175 SAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQ 234
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
Y E +DLF++M+ V PD T+ S+L+AC+ LG L G +IH Y N A +
Sbjct: 235 YREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNS 294
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LIDMYAKCG + +L++F + K++ WN +I LALHG G A+KL EM D
Sbjct: 295 LIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPD 354
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+IT GLLSACSH+GLV G F RM + V R++EHY CMVDLLGR LL AIELI
Sbjct: 355 EITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELI 414
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
MP +P + GALL AC IH ++EIG ++ K + + S G ++ +N+Y +W
Sbjct: 415 GRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPH-SGGLYVLISNIYWEAQRW 473
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
E+ + R +M D GI K S IE++G ++F+ H
Sbjct: 474 EDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRH 513
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 121/282 (42%), Gaps = 15/282 (5%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A +AG+++ A MF ++ N +N+++ GY S I+ V LF M + P+ T
Sbjct: 31 AVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFT 90
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF---Y 263
+ VL AC + +H A G+ S ALI +Y CG I + ++F
Sbjct: 91 LPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDIT 150
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ D+ NA++ A G ++A + + V +++ ++SA + G ++
Sbjct: 151 DKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNV----VSWTSMISAYAQHGSIEV 206
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALL 380
++F +M + + + M+ R A++L M P E+ L ++L
Sbjct: 207 ARQIFDQMP-----GKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSIL 261
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
+AC DL +G ++ + + ++YA CG
Sbjct: 262 AACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 303
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 33/230 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D + +L A L +G +H + V + +L+ MY
Sbjct: 245 MRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGP 304
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+ A +F +MP K++++WN ++ A A G A+KL + M L D + ++S
Sbjct: 305 VVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSA 364
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ G + Y FD++ + Y E+E + MV
Sbjct: 365 CSHSGLVDMGLYYFDRMG-----------VIYRVPREIEH---------------YACMV 398
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
R L E ++L M +KPD + ++L AC G++E G +I
Sbjct: 399 DLLGRGGLLGEAIELIGRMP---MKPDVVVWGALLGACRIHGNVEIGKQI 445
>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
Length = 690
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 179/503 (35%), Positives = 271/503 (53%), Gaps = 46/503 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +SF L+LKA L G+ +HG V++Q L+ +Y C
Sbjct: 169 MLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGC 228
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFNIMISGYA 118
+ A ++F++M +D +++NSM+D + G + A +L D+MP+ K++ S+N MISGYA
Sbjct: 229 LGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYA 288
Query: 119 R--------------------------------IGKIHSARYIFDKVPAKDVVSWNSLIL 146
R GK+ +A ++F+ +P +DVVSW +++
Sbjct: 289 RSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVD 348
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYL 205
Y GE++ A +F +M ++VI+ N M+ GY+++ +E + F +M + P
Sbjct: 349 GYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNA 408
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ LSA A LG + G +H Y DNG + + ALIDMYAKCGSI+ +L
Sbjct: 409 TLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSIDNAL------ 462
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ WNA+J GLA+HG G A +L EM VK BDITFIG+L+AC+HAGLV+EG
Sbjct: 463 ----IDHWNAIJXGLAIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGL 518
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M V KL+HYGCMVD+LGRA ++ + +E MP EP + + LLSAC
Sbjct: 519 MXFXLMRXVHKVEPKLQHYGCMVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRN 578
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H++ IG+ VAK + + +Y + ++ +N+YA G W + R R MM + K G
Sbjct: 579 HENFTIGEPVAKHLISVDSY-NPSSYVLLSNIYAXFGMWNDVYRIRMMMKQRDLKKIPGC 637
Query: 446 SVIEVNGSYHKFLAGGIGHLSNL 468
S IE+ G+ H+F H L
Sbjct: 638 SQIELEGNVHEFFVRDKSHPQRL 660
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 35/231 (15%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N WN ++ + + E +F+ M V D + + VL AC+ LG ++ G +IH
Sbjct: 142 NPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIH 201
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY-- 285
+ S+ L+ +Y +CG + + ++F + +D +N+MI G HG
Sbjct: 202 GLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVK 261
Query: 286 ------------------------GYA----ALKLLGEMNDSCVKADDITFIGLLSACSH 317
GYA L++ E+ + K D I++ ++ C
Sbjct: 262 SARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVK 321
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G ++ LF+ M K R + + MVD + +D A L + MP
Sbjct: 322 CGKMENAHHLFNXMPK-----RDVVSWANMVDGYAKLGEIDIARGLFDEMP 367
>gi|297830850|ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
gi|297329147|gb|EFH59566.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
Length = 523
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 268/474 (56%), Gaps = 40/474 (8%)
Query: 14 PLLLKA-AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
PL+LKA A ++ +G +LH ++IK G C V V ++L+ MYG C+ A KVF++MP
Sbjct: 49 PLILKACACVVPRVVLGKLLHSESIKFGVCSDVMVGSSLISMYGKWGCVVSARKVFDEMP 108
Query: 73 EKDIIAWNSML-------DAFASCG-------------------------QMDHAMKLID 100
E+++ WN+M+ DA ++ G +++ A +L +
Sbjct: 109 ERNVATWNAMIGGYMGNGDAVSASGLFEEISVCRNTVTWIEMMKGYGKRKEIEKARELFE 168
Query: 101 LMP--LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAG 158
MP LK+V ++++M+ Y K+ AR F+ +P K+ W+ +I Y G++ +A
Sbjct: 169 RMPFELKNVKAWSVMLGVYVSHRKMEDARKFFEDIPEKNSFVWSLMISGYFRIGDVHEAT 228
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+F ++ ++++ WNT++TGY ++ + +D F M+ +PD +TV+SVLSACA G
Sbjct: 229 SVFYRVFARDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEGYEPDAVTVSSVLSACAQSG 288
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
L+ G +H G+ N + ALIDMYAKCG +E + VF ++ + CWN+MI
Sbjct: 289 RLDVGREVHSLINRKGIELNQFVSNALIDMYAKCGDLENATSVFESLSLRSLACWNSMIS 348
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
LA+HG G AL++ M +K D+ITF+ +L+AC H G + EG ++FS M K V
Sbjct: 349 CLAIHGKGNEALEMFRTMGSLDLKPDEITFLAVLTACVHGGFLMEGLKIFSEM-KTQDVK 407
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
++H+GC++ LLGR+ L A L+ MP +P +++LGALL AC +H D EI ++V K+
Sbjct: 408 PNVKHFGCLIHLLGRSGKLKEAYRLVREMPVKPNDTVLGALLGACKVHMDTEIAEQVMKI 467
Query: 399 VC---AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG-SSVI 448
+ + +N + L +NLYA +WE A R M G+ K+ G SSV+
Sbjct: 468 IVTVGSITNSDCENHLASISNLYAHTERWETAEALRVEMEKRGLEKSPGLSSVV 521
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D + +L A +G +H + G + +V AL+ MY
Sbjct: 265 MQGEGYEPDAVTVSSVLSACAQSGRLDVGREVHSLINRKGIELNQFVSNALIDMYAKCGD 324
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------IDLMPLKDVTSFNIMI 114
+++A VFE + + + WNSM+ A G+ + A+++ +DL P D +F ++
Sbjct: 325 LENATSVFESLSLRSLACWNSMISCLAIHGKGNEALEMFRTMGSLDLKP--DEITFLAVL 382
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ G + IF ++ +DV + LI +G++++A + ++M VK
Sbjct: 383 TACVHGGFLMEGLKIFSEMKTQDVKPNVKHFGCLIHLLGRSGKLKEAYRLVREMPVKP-- 440
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL-SACAN-LGSL-------- 220
N V G L + + D A V +TV S+ S C N L S+
Sbjct: 441 --NDTVLGALLGACKVHM----DTEIAEQVMKIIVTVGSITNSDCENHLASISNLYAHTE 494
Query: 221 --ETGARIHVYATDNGLASNPHATTALI 246
ET + V GL +P ++ ++
Sbjct: 495 RWETAEALRVEMEKRGLEKSPGLSSVVL 522
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 249/447 (55%), Gaps = 32/447 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
AL+ Y + +A ++F++MP +D+++WN M+ +A G M A +L D P++DV
Sbjct: 72 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 131
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++ ++SGYA+ G + AR +FD +P ++ VSWN+++ AY M++A E+F M +N
Sbjct: 132 TWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN 191
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKA---------------GNVKPDYLTV------ 207
V +WNTM+TGY ++ + E +FD M G + L +
Sbjct: 192 VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 251
Query: 208 ----------TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
VLS CA++ +LE G ++H G AL+ MY KCG++E
Sbjct: 252 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMED 311
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ F + + +DV WN MI G A HG+G AL++ M + K DDIT +G+L+ACSH
Sbjct: 312 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 371
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+GLV++G F M DFGVT K EHY CM+DLLGRA L A +L++ MPFEP ++ G
Sbjct: 372 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 431
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
ALL A IH++ E+G A+ + + + G ++ +N+YAS G+W +A + R MM +
Sbjct: 432 ALLGASRIHRNPELGRSAAEKIF-ELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEER 490
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S IEV H F AG H
Sbjct: 491 GVKKVPGFSWIEVQNKVHTFSAGDCVH 517
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 128/271 (47%), Gaps = 39/271 (14%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A +F E D+I+WN+++ + G+M A +L D MP +DV S+NIM+SGYAR
Sbjct: 53 VEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 112
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD P +DV +W +++ Y G +E+A +F M +N ++WN MV Y+
Sbjct: 113 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYI 172
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ ++ E +LF+ M C N+ S T
Sbjct: 173 QRRMMDEAKELFNMM-----------------PCRNVASWNT------------------ 197
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
++ YA+ G +E++ VF KD W AM+ + G L+L EM
Sbjct: 198 ----MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 253
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRM 331
+ F +LS C+ ++ G +L R+
Sbjct: 254 EWVNRSAFACVLSTCADIAALECGMQLHGRL 284
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 138/263 (52%), Gaps = 12/263 (4%)
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
MP +D + +N M+ + A+ G + A DL P KD S+N M++ Y R G++ AR +F
Sbjct: 1 MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
+ DV+SWN+L+ Y G+M +A E+F +M ++V++WN MV+GY R +E
Sbjct: 61 NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARR 120
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
LFD A V+ D T T+V+S A G LE R+ D N + A++ Y
Sbjct: 121 LFD---AAPVR-DVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYI 172
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
+ ++++ E+F ++V WN M+ G A G L+ + D+ + D +++
Sbjct: 173 QRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGM----LEEAKAVFDTMPQKDAVSWAA 228
Query: 311 LLSACSHAGLVQEGCELFSRMEK 333
+L+A S G +E +LF M +
Sbjct: 229 MLAAYSQGGCSEETLQLFIEMGR 251
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 125/252 (49%), Gaps = 10/252 (3%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C +V +L Y +++A VF+ MP+KD ++W +ML A++ G + ++L
Sbjct: 189 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 248
Query: 102 M----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGE 153
M + ++F ++S A I + + ++ N+L+ Y G
Sbjct: 249 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 308
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
ME A F++M ++V++WNTM+ GY R E +++FD M+ + KPD +T+ VL+A
Sbjct: 309 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 368
Query: 214 CANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVF 271
C++ G +E G + + D G+ + P T +ID+ + G + ++ ++ + D
Sbjct: 369 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 428
Query: 272 CWNAMILGLALH 283
W A++ +H
Sbjct: 429 MWGALLGASRIH 440
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + +F +L +++ G+ LHG+ I+ G+ +V ALL MY
Sbjct: 249 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 308
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
++DA FE+M E+D+++WN+M+ +A G A+++ D+M +I + G
Sbjct: 309 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 364
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/359 (42%), Positives = 224/359 (62%), Gaps = 1/359 (0%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
DV + N +I+ YA G A +FD++P D VSWNS+I Y AG+M+ A +F+KM+
Sbjct: 178 DVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMV 237
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
KN I+W TM++GY+++ ++ E + LF EM+ +V+PD +++ + LSACA LG+LE G
Sbjct: 238 EKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 297
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
IH Y T + + LIDMYAKCG + ++LEVF Q K V W A+I G A HG+
Sbjct: 298 IHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGH 357
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
G A+ EM +K + ITF +L+ACS+ GLV+EG +F ME+D+ + +EHYG
Sbjct: 358 GREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYG 417
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
C+VDLL RA LLD A I+ MP +P I GALL AC IH+++E+G+ + +++ A Y
Sbjct: 418 CVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 477
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G + AN++A +W++A R +M + G+ K G S I + G+ H+FLAG H
Sbjct: 478 -HGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSH 535
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 41/314 (13%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y+FP LLKA LS+ +H Q K G+ VY +L+ Y + A +F++
Sbjct: 145 YTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDR 204
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
+P+ D ++WNS++ +A G+MD A+ L M K+ S+ MISGY + G A +F
Sbjct: 205 IPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLF 264
Query: 131 DKVPAKDVVSWN---------------------------------------SLILAYTNA 151
++ DV N LI Y
Sbjct: 265 HEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKC 324
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G+M +A E+FK + K+V W +++GY E + F EM+ +KP+ +T T+VL
Sbjct: 325 GDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVL 384
Query: 212 SACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-D 269
+AC+ G +E G I + D L ++D+ ++ G ++++ + +K +
Sbjct: 385 TACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPN 444
Query: 270 VFCWNAMILGLALH 283
W A++ +H
Sbjct: 445 AVIWGALLKACRIH 458
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 35/276 (12%)
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
S ++ T++ + A +F + WN M+ G+ S + L+ M +
Sbjct: 83 SCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPH 142
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM-------------- 248
+ T S+L AC+NL +LE +IH T G ++ +A +LI+
Sbjct: 143 NAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLF 202
Query: 249 -----------------YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
YAK G ++ +L +F K K+ W MI G G AL+
Sbjct: 203 DRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQ 262
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC-MVDL 350
L EM +S V+ D+++ LSAC+ G +++G + S + K R GC ++D+
Sbjct: 263 LFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKT--RIRMDSVLGCVLIDM 320
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+ + A+E+ + + + ++ AL+S H
Sbjct: 321 YAKCGDMGEALEVFKNIQRKSVQA-WTALISGYAYH 355
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 80/186 (43%), Gaps = 10/186 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V DN S L A L + G +H KT + L+ MY
Sbjct: 267 MQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGD 326
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-KLIDLMPL---KDVTSFNIMISG 116
+ +A +VF+ + K + AW +++ +A G A+ K +++ + +V +F +++
Sbjct: 327 MGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTA 386
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + + IF D + + ++ + AG +++A ++M +K N +
Sbjct: 387 CSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAV 446
Query: 171 TWNTMV 176
W ++
Sbjct: 447 IWGALL 452
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 265/465 (56%), Gaps = 7/465 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M +LG+ A N++FP LLKA G L+ +G H + G+ V+V +L+ MYG C
Sbjct: 91 MLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGC 150
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-TSFNIMISGYAR 119
D + +VFE+MPE+++++W+SM+ A+A G+ + + L M + + + +++ A
Sbjct: 151 FDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMAC 210
Query: 120 IGKIHSA----RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
I + H A R + D D N+ + Y G ++ A F +L K+++ W +M
Sbjct: 211 IHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSM 270
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ Y+++ L I ++LF +MK + PD +T+ S++ A +NL S + +H T +
Sbjct: 271 IEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFF 330
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
++ TA+ID+Y KCG++E + + F + +++ W+ MI G +HG+G AL L +
Sbjct: 331 KNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQ 390
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M S +K D I F+ +LSACSH GL+ EG E F M +DFGVT + EHY CMVDLLGRA
Sbjct: 391 MKAS-IKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAG 449
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L A IE MP P + GALL AC IH +LE + A+ + + + G ++ +
Sbjct: 450 RLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLF-NLDAENPGRYILLS 508
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
N+YAS G+ +EA+ R +M G+ KT G ++IE+ + F+AG
Sbjct: 509 NIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTFVAG 553
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 135/301 (44%), Gaps = 17/301 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH +K+ H ++ T+L+ Y SL I A+ +F ++ WN ++ AF++
Sbjct: 23 LHASILKSHL--HPHLCTSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPH 80
Query: 92 MDHAMKLIDLMPLKDVTSFNIM----------ISGYARIGKIHSARYIFDKVPAKDVVSW 141
++++L M + + N ++ + + H+ +F DV
Sbjct: 81 SRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGY--ESDVFVA 138
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSL+ Y G + + ++F++M +NV++W++MV Y + Y E + LF M +
Sbjct: 139 NSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIA 198
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ ++ + ++ + R+ DNGL S+ A + MYA+CG I+ +
Sbjct: 199 PNRGSIVNAMACIHREHEADDFCRV---VIDNGLDSDQSVQNAAMGMYARCGRIDVARRF 255
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
FY KD+ W +MI AL+L +M + D +T + L+ A S+
Sbjct: 256 FYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASF 315
Query: 322 Q 322
Q
Sbjct: 316 Q 316
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+PH T+LI YA GSI + +F S +VF WN +I + + +L+L M
Sbjct: 33 HPHLCTSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRML 92
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGC----ELFSRMEKD---FGVTRKLEHYGCMVDL 350
++A + TF LL AC GC EL +R FG + ++ +
Sbjct: 93 QLGIQATNFTFPFLLKAC--------GCLADFELGARAHAHVVVFGYESDVFVANSLMAM 144
Query: 351 LGRARLLDRAIELIEAMP 368
GR D + ++ E MP
Sbjct: 145 YGRFGCFDFSRQVFERMP 162
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 163/435 (37%), Positives = 243/435 (55%), Gaps = 32/435 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA +F+KMP +D I+WN+M+ +A G + A +L D P +DV ++ M+SGY +
Sbjct: 220 LGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY- 179
G + A+ FD++P K+ VS+N++I Y +M+ A E+F+ M +N+ +WNTM+TGY
Sbjct: 280 GMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYG 339
Query: 180 ------------------------------LRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
+S Y E +++F E+K + T
Sbjct: 340 QIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGC 399
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
LS CA++ +LE G +IH A G + AL+ MY KCGSI+++ + F + KD
Sbjct: 400 ALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKD 459
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V WN M+ G A HG+G AL + M + VK D+IT +G+LSACSH GL+ G E F
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFY 519
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M KD+GV +HY CM+DLLGRA L+ A +LI MPF+P + GALL A IH +
Sbjct: 520 SMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNT 579
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E+G++ A+MV K + G ++ +NLYA+ G+W +A++ R+ M D G+ K G S +E
Sbjct: 580 ELGEKAAEMVF-KMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638
Query: 450 VNGSYHKFLAGGIGH 464
V H F G H
Sbjct: 639 VQNKIHTFSVGDCSH 653
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 140/279 (50%), Gaps = 8/279 (2%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
+LL Y +D+A +VF+ MPEK+ I+WN +L A+ G+++ A L + D+
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N ++ G+ R K+ AR++FDK+P +D +SWN++I Y G + +A +F + ++
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRD 265
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW MV+GY+++ + E FDEM N ++ ++++ ++ +
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE----VSYNAMIAGYVQTKKMDIARELF- 320
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
++ N + +I Y + G I Q+ + F +D W A+I G A G+
Sbjct: 321 ---ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEE 377
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
AL + E+ + TF LS C+ ++ G ++
Sbjct: 378 ALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 44/314 (14%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A +F++MPE+D+ +WN ML + ++ A +L DLMP KDV S+N ++SGYA+ G +
Sbjct: 99 ARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYV 158
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA-------------------------- 157
AR +FD +P K+ +SWN L+ AY + G +E+A
Sbjct: 159 DEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKK 218
Query: 158 --GE---MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
G+ +F KM V++ I+WNTM++GY + + LFDE +V T T+++S
Sbjct: 219 KLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVS 274
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
G L+ D N + A+I Y + ++ + E+F +++
Sbjct: 275 GYVQNGMLDEAKTFF----DEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISS 330
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WN MI G G A K D + D +++ +++ + +G +E +F ++
Sbjct: 331 WNTMITGYGQIGDIAQARKFF----DMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK 386
Query: 333 KDFGVTRKLEHYGC 346
+D G + +GC
Sbjct: 387 QD-GESLNRATFGC 399
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 17/299 (5%)
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
++ + DI+ WN + G D A+ + + MP + S+N MISGY R K + AR +
Sbjct: 43 RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FD++P +D+ SWN ++ Y + A +F M K+V++WN++++GY ++ E
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
++FD M N ++ +L+A + G +E + +D L S L+ +
Sbjct: 163 EVFDNMPEKNS----ISWNGLLAAYVHNGRIEEACLLFESKSDWDLIS----WNCLMGGF 214
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
+ + + +F K V+D WN MI G A G A +L D D T+
Sbjct: 215 VRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF----DESPTRDVFTWT 270
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++S G++ E F M + V+ Y M+ + + +D A EL E+MP
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARELFESMP 324
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 120/254 (47%), Gaps = 12/254 (4%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-- 99
C ++ ++ YG + I A K F+ MP++D ++W +++ +A G + A+ +
Sbjct: 325 CRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVE 384
Query: 100 ---DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAG 152
D L T F +S A I + + I + N+L+ Y G
Sbjct: 385 IKQDGESLNRAT-FGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCG 443
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+++A + F+ + K+V++WNTM+ GY R + + +F+ MK VKPD +T+ VLS
Sbjct: 444 SIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503
Query: 213 ACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-V 270
AC++ G L+ G + D G+ T +ID+ + G +E++ ++ +
Sbjct: 504 ACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563
Query: 271 FCWNAMILGLALHG 284
W A++ +HG
Sbjct: 564 ASWGALLGASRIHG 577
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 100/250 (40%), Gaps = 46/250 (18%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ G + +F L +++ +G +HGQ +K G+ +V ALL MY
Sbjct: 385 IKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGS 444
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----------- 109
ID+A FE + EKD+++WN+ML +A G A+ + + M V
Sbjct: 445 IDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSA 504
Query: 110 -----------------------------FNIMISGYARIGKIHSARYIFDKVPAKD-VV 139
+ MI R G++ A+ + +P +
Sbjct: 505 CSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAA 564
Query: 140 SWNSLILA---YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
SW +L+ A + N EKA EM KM +N + + Y S +++ + +M+
Sbjct: 565 SWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMR 624
Query: 197 AGNVK--PDY 204
V+ P Y
Sbjct: 625 DIGVQKVPGY 634
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/413 (37%), Positives = 246/413 (59%), Gaps = 5/413 (1%)
Query: 52 LKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN 111
L+ YG ++ A F KMP KDI +WN+++ FA GQM A L +MP K+ S++
Sbjct: 147 LRSYG----VEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWS 202
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
MISGY G + +A ++ V K VV +++ Y G++E A +F++M VKN++T
Sbjct: 203 AMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVT 262
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN+M+ GY+ + + + +F M V+P+ L+++SVL C+NL +L G ++H +
Sbjct: 263 WNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVS 322
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ L+ + A T+LI MY KCG ++ + ++F + KDV WNAMI G A HG G AL
Sbjct: 323 KSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALH 382
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M + +K D ITF+ ++ AC+HAG V G + F M+K+FG+ K HY C++DLL
Sbjct: 383 LFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLL 442
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GRA LD A+ LI+ MPF+P +I G LL AC IH++L++ + A+ + + G +
Sbjct: 443 GRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYV 502
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YA+ +W++ + R MM + +VK G S IE+ H+F + H
Sbjct: 503 QL-ANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLH 554
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 149/295 (50%), Gaps = 10/295 (3%)
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI-GKIHSARYIFDKV 133
D+++ N + +F ++ A + + M ++ ++N M+SGY ++ GK+ A +FDK+
Sbjct: 72 DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131
Query: 134 PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD 193
P D VS+N +++ Y + +E A F KM VK++ +WNT+++G+ ++ + DLF
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
M N ++ ++++S G LE ++ + G+ S TA++ Y K G
Sbjct: 192 VMPEKN----GVSWSAMISGYVEHGDLEAAEELY---KNVGMKSVV-VETAMLTGYMKFG 243
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+E + +F + VK++ WN+MI G + LK+ M +S V+ + ++ +L
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
CS+ + G ++ + K +++ ++ + + LD A +L MP
Sbjct: 304 GCSNLSALPLGRQMHQLVSKS-PLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP 357
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 124/233 (53%), Gaps = 9/233 (3%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V V+TA+L Y ++ A ++F++M K+++ WNSM+ + + + +K+ M
Sbjct: 229 VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIE 288
Query: 105 KDVT----SFNIMISGYARIGKIHSAR---YIFDKVP-AKDVVSWNSLILAYTNAGEMEK 156
V S + ++ G + + + R + K P +KD + SLI Y G+++
Sbjct: 289 SRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDS 348
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A ++F +M K+VI+WN M++GY + + + LFD+M+ G +KPD++T +V+ AC +
Sbjct: 349 AWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNH 408
Query: 217 LGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
G ++ G + + G+ + P T +ID+ + G +++++ + + K
Sbjct: 409 AGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFK 461
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 23/301 (7%)
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI-EVVDLFD 193
A DVVS N I ++ A ++E A +F+KM V+ +TWNTM++GY + + E +LFD
Sbjct: 70 ASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFD 129
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
++ +PD ++ +L +E +AS LI +A+ G
Sbjct: 130 KIP----EPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIAS----WNTLISGFAQNG 181
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
++++ ++F K+ W+AMI G HG AA +L + V + G +
Sbjct: 182 QMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMK 241
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFE 370
G V+ +F RM + L + M+ + +++ + M
Sbjct: 242 ----FGKVELAERIFQRM-----AVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVR 292
Query: 371 PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRW 430
P L ++L C L +G ++ ++V ++Y CG + A W
Sbjct: 293 PNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSA--W 350
Query: 431 R 431
+
Sbjct: 351 K 351
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 112/273 (41%), Gaps = 50/273 (18%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E V + S +L LS+ +G +H K+ T+L+ MY
Sbjct: 286 MIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGD 345
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A+K+F +MP KD+I+WN+M+ SGYA+
Sbjct: 346 LDSAWKLFLEMPRKDVISWNAMI-------------------------------SGYAQH 374
Query: 121 GKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVIT 171
G A ++FDK+ D +++ ++ILA +AG ++ + FK M + +
Sbjct: 375 GAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVH 434
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
+ ++ R+ E V L EM KP ++L AC +L+ +A
Sbjct: 435 YTCVIDLLGRAGRLDEAVSLIKEMP---FKPHAAIYGTLLGACRIHKNLDLAE----FAA 487
Query: 232 DNGLASNPHATTA---LIDMYAKCGSIEQSLEV 261
N L +P + T L ++YA +Q +V
Sbjct: 488 RNLLNLDPTSATGYVQLANIYAATNKWDQVAKV 520
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 275/478 (57%), Gaps = 17/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY---GS 57
M++ G+ +N+++P + A L G H +K+G C +V+ +L+ MY G
Sbjct: 117 MKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGE 176
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIM 113
L C A +VF+++ EKD+++WNSM+ ++ G A+ L M D + +
Sbjct: 177 LGC---ARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSI 233
Query: 114 ISGYARIGKIHSARYI--FDKVPAKDVVSW--NSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ +G + +I F D+ S+ ++LI Y G++ A +F +M+ K+V
Sbjct: 234 LGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDV 293
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+TWN M+TGY ++ + E + LF M+ V PD +T+ VLSACA++G+L+ G + Y
Sbjct: 294 VTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTY 353
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
A++ GL ++ + +TALIDMYAKCGS++ +L VF K+ WNAMI LA HG +
Sbjct: 354 ASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQES 413
Query: 290 LKLLGEMNDS--CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
L L M+ V+ +DI+FIG+LSAC HAGLV EG +LF M FG+ K+EH+ CM
Sbjct: 414 LSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCM 473
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
VDLL RA + A + IE MP +P E +LGALL AC +++++ +RV M+ + L+
Sbjct: 474 VDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLL-EMEPLN 532
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
G ++ + ++A+ +W+++ R R +M G+ KT G S IE+ H+F AG + H
Sbjct: 533 SGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQVHEFHAGDVLHF 590
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 111/228 (48%), Gaps = 7/228 (3%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS-QLYIEVVDLFDEMKAGNV 200
N L+ + + + A +F ++ N +N M+ G + Q + ++ + +MK +
Sbjct: 63 NFLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGI 122
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+P+ T V ACANL L G H +GL ++ H +LI MY++CG + +
Sbjct: 123 RPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARR 182
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF + KD+ WN+MI G + GY A+ L GEM D+ + D++T + +L AC G
Sbjct: 183 VFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGD 242
Query: 321 VQ-----EGCELFSRME-KDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
+ EG + + M+ F + + YG DL R+ DR ++
Sbjct: 243 LGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVK 290
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 165/459 (35%), Positives = 260/459 (56%), Gaps = 43/459 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D +FP +L+A + + G+ +H +K G +V+ AL+ M+
Sbjct: 78 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMH---------- 127
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
ASCG + A L D +D +++ MI+G AR G I +
Sbjct: 128 ---------------------ASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGA 166
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD+ P KD+VSWN +I AY G+M A E+F ++ ++V++WN M++GY+R +
Sbjct: 167 ARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSH 226
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD----NGLASNPHA 241
+ ++LF++M+ KPD +T+ S+LSACA+ G L+ G R+H +D NG
Sbjct: 227 LHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV--L 284
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
ALIDMYAKCGS++ + EVF+ + KDV WN+++ GLALHG+ ++ + +M V
Sbjct: 285 GNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKV 344
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
+ D+ITF+ +L ACSH G+V +G E F+ M+ + V ++HYGCMVD+LGRA LL A
Sbjct: 345 RPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAF 404
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
E I+ M EP I LLSAC +H ++E+ + + N S G+ ++ +N+YAS
Sbjct: 405 EFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDES-GDYVLLSNIYASV 463
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G+W + + R +M+D+G+ K A S + +H+ L G
Sbjct: 464 GEWFGSEKMRKLMDDSGVNKEADSERL-----HHRLLFG 497
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 137/324 (42%), Gaps = 45/324 (13%)
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ S A G I A +FD++P D +N+LI + A ++ +ML +
Sbjct: 17 LFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGG 76
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
V+PD LT VL AC +G+ +TG ++H +
Sbjct: 77 ---------------------------GVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVV 109
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G S+ ALI M+A CG++ + +F +D W+AMI G A G AA
Sbjct: 110 KAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARD 169
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L D C D +++ +++A + G + ELF ++ + R + + M+
Sbjct: 170 LF----DECPVKDLVSWNVMITAYAKRGDMALARELFDQVPE-----RDVVSWNVMISGY 220
Query: 352 GRARLLDRAIELIEAMPF---EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
R A+EL E M +P + +LLSAC DL++G R+ + + +
Sbjct: 221 VRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSL--SDMFSRN 278
Query: 409 GELMMFAN----LYASCGQWEEAN 428
G ++ N +YA CG + A+
Sbjct: 279 GFPVVLGNALIDMYAKCGSMKSAH 302
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 221/352 (62%), Gaps = 1/352 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+I YA + +A+ +F+ A+DVVSWN++I Y EM A +F +M+ ++VI+W
Sbjct: 207 LIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISW 266
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTM+ GY E + LFD+M+A VKP TV S+LSACA+LG+L+ G +H Y D
Sbjct: 267 NTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND 326
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N + N TAL+DMYAKCG I + +VF + KDV WN +I G+A+HG A +L
Sbjct: 327 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQL 386
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM ++ V+ +DITF+ +LSACSHAG+V EG +L M +G+ K+EHYGC++DLL
Sbjct: 387 FKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLA 446
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L+ A+ELI MP EP S LGALL C IH + E+G+ V K + S G +
Sbjct: 447 RAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHS-GRYI 505
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N+YA+ +W++A + RN+M GI K G SVIE+ G H+F+AG H
Sbjct: 506 LLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 557
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 149/302 (49%), Gaps = 40/302 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ D+ ++P ++KA S + GL++H +K+GF Y+ ++L+ +Y + +
Sbjct: 157 MLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKD 216
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A ++F +D+++WN+M+D + +M HA + D M +DV S+N MI+GYA
Sbjct: 217 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIC 276
Query: 121 GKIHSARYIFDKVPAKDV---------------------------------------VSW 141
GK + A +FD++ A V +
Sbjct: 277 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 336
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+L+ Y G++ A ++F M K+V+ WNT++ G E LF EMK V+
Sbjct: 337 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 396
Query: 202 PDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T ++LSAC++ G ++ G + + ++ G+ +ID+ A+ G +E+++E
Sbjct: 397 PNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAME 456
Query: 261 VF 262
+
Sbjct: 457 LI 458
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 31/189 (16%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
+N+++ S+ +E + L+ M +KPD++T V+ AC G +H +
Sbjct: 134 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 193
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH---GY--- 285
+G + + ++LI +YA + + ++F +DV WNAMI G H G+
Sbjct: 194 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 253
Query: 286 ------------------GYA-------ALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
GYA AL L +M VK + T + LLSAC+H G
Sbjct: 254 VFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 313
Query: 321 VQEGCELFS 329
+ +G L +
Sbjct: 314 LDKGLHLHT 322
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 152/404 (37%), Positives = 234/404 (57%), Gaps = 1/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A ++FE+ P +D+ W +M+ A+ G +D A ++ D MP K S+N+MI+GYA+
Sbjct: 235 LSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQY 294
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
++ R +F+++P ++ SWN +I Y G++ +A +F M ++ ++W ++ GY
Sbjct: 295 KRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYA 354
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ LY E +++ EMK + T LSACA++ +LE G ++H G
Sbjct: 355 QNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCL 414
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
AL+ MY KCG I+++ +VF Q KD+ WN M+ G A HG+G AL + M +
Sbjct: 415 VGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAG 474
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
VK D+IT +G+LSACSH GL G E F M KD+G+T +HY CM+DLLGRA L+ A
Sbjct: 475 VKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEA 534
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
LI MPFEP + GALL A IH ++E+G++ A+MV + S G ++ +NLYA+
Sbjct: 535 QNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNS-GMYVLLSNLYAA 593
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+W + ++ R M G+ KT G S +EV H F G H
Sbjct: 594 SGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFH 637
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 17/280 (6%)
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
G D A+ + D MPL++ S+N MISGY R K AR +FDK+P KD+ SWN ++ Y
Sbjct: 47 GHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYA 106
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
+ A +F M K+V++WN M++GY+RS E D+FD M N ++
Sbjct: 107 RNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNS----ISWNG 162
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+L+A G LE R+ +D L S L+ Y K + + ++F + V+D
Sbjct: 163 LLAAYVRSGRLEEARRLFESKSDWELIS----CNCLMGGYVKRNMLGDARQLFDQIPVRD 218
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WN MI G A G A +L E S V+ D T+ ++ A G++ E +F
Sbjct: 219 LISWNTMISGYAQDGDLSQARRLFEE---SPVR-DVFTWTAMVYAYVQDGMLDEARRVFD 274
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF 369
M + ++ Y M+ + + +D EL E MPF
Sbjct: 275 EMPQ-----KREMSYNVMIAGYAQYKRMDMGRELFEEMPF 309
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 143/302 (47%), Gaps = 43/302 (14%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A +F+KMP KD+ +WN ML +A ++ A L D MP KDV S+N M+SGY R G +
Sbjct: 83 ARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHV 142
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK--------------------------- 156
AR +FD++P K+ +SWN L+ AY +G +E+
Sbjct: 143 DEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRN 202
Query: 157 ----AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
A ++F ++ V+++I+WNTM++GY + + LF+E +V T T+++
Sbjct: 203 MLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVY 258
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
A G L+ R+ D + +I YA+ ++ E+F + ++
Sbjct: 259 AYVQDGMLDEARRVF----DEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGS 314
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WN MI G +G A L D + D +++ +++ + GL +E + M+
Sbjct: 315 WNIMISGYCQNGDLAQARNLF----DMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMK 370
Query: 333 KD 334
+D
Sbjct: 371 RD 372
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 151/329 (45%), Gaps = 45/329 (13%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
+L Y R + DA +F+ MPEKD+++WN+ML + G +D A + D MP K+ S+
Sbjct: 101 MLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISW 160
Query: 111 NIMISGYARIGKIHSARYIF-------------------------------DKVPAKDVV 139
N +++ Y R G++ AR +F D++P +D++
Sbjct: 161 NGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLI 220
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
SWN++I Y G++ +A +F++ V++V TW MV Y++ + E +FDEM
Sbjct: 221 SWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP--- 277
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+ ++ +++ A ++ G + + N + +I Y + G + Q+
Sbjct: 278 -QKREMSYNVMIAGYAQYKRMDMGRELF----EEMPFPNIGSWNIMISGYCQNGDLAQAR 332
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F +D W A+I G A +G A+ +L EM + TF LSAC+
Sbjct: 333 NLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIA 392
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
++ G ++ + V R GC+V
Sbjct: 393 ALELGKQVHGQ------VVRTGYEKGCLV 415
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 46/250 (18%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G + +F L A +++ +G +HGQ ++TG+ V AL+ MY C
Sbjct: 369 MKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGC 428
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG---- 116
ID+A+ VF+ + KDI++WN+ML +A G A+ + + M V I + G
Sbjct: 429 IDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSA 488
Query: 117 -----------------------------YA-------RIGKIHSARYIFDKVP-AKDVV 139
YA R G + A+ + +P D
Sbjct: 489 CSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAA 548
Query: 140 SWNSLILAYTNAGEM---EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
+W +L+ A G M E+A EM KM N + + Y S +++V + +M+
Sbjct: 549 TWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMR 608
Query: 197 AGNVK--PDY 204
V+ P Y
Sbjct: 609 QIGVQKTPGY 618
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 157/359 (43%), Positives = 217/359 (60%), Gaps = 1/359 (0%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D S N +I Y + AR +FD +P +DVVSW SLI Y+ G ++KA E+F+ M
Sbjct: 154 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMP 213
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+N ++WN M+ Y++S E LFD M+ NV D S+LSAC LG+LE G
Sbjct: 214 ERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKW 273
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
IH Y +G+ + T +IDMY KCG +E++ EVF + K + WN MI GLA+HG
Sbjct: 274 IHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGK 333
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
G AA++L EM V D ITF+ +LSAC+H+GLV+EG F M + G+ +EH+G
Sbjct: 334 GEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFG 393
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
CMVDLLGRA LL+ A +LI MP P +LGAL+ AC IH + E+G+++ K V +
Sbjct: 394 CMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPH 453
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G ++ ANLYAS G+WE+ + R +MND G+ K G S+IE +F+AGG H
Sbjct: 454 NS-GRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAH 511
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 153/320 (47%), Gaps = 41/320 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + +++P L++A I + G +H +K GF + L+ MY + + ++ A
Sbjct: 116 VSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQAR 175
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
+VF+ MP++D+++W S++ ++ G +D A ++ +LMP ++ S+N MI+ Y + ++H
Sbjct: 176 RVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHE 235
Query: 126 ARYIFDKVPAKDVV----------------------SW-----------------NSLIL 146
A +FD++ ++VV W ++I
Sbjct: 236 AFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVID 295
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G +EKA E+F ++ K + +WN M+ G ++LF EM+ V PD +T
Sbjct: 296 MYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGIT 355
Query: 207 VTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+VLSACA+ G +E G Y T+ GL ++D+ + G +E++ ++ +
Sbjct: 356 FVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEM 415
Query: 266 QV-KDVFCWNAMILGLALHG 284
V D A++ +HG
Sbjct: 416 PVNPDAGVLGALVGACRIHG 435
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 4/186 (2%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A + +G++ A E+F K+ + +NT+ GYLR QL + ++ M +V P+ T
Sbjct: 63 AISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFT 122
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
++ AC ++E G +IH + G ++ + LI MY S+EQ+ VF
Sbjct: 123 YPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMP 182
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+DV W ++I G + G+ A ++ M + + +++ +++A + + E
Sbjct: 183 QRDVVSWTSLITGYSQWGFVDKAREVFELMPER----NSVSWNAMIAAYVQSNRLHEAFA 238
Query: 327 LFSRME 332
LF RM
Sbjct: 239 LFDRMR 244
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 165/459 (35%), Positives = 260/459 (56%), Gaps = 43/459 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D +FP +L+A + + G+ +H +K G +V+ AL+ M+
Sbjct: 78 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMH---------- 127
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
ASCG + A L D +D +++ MI+G AR G I +
Sbjct: 128 ---------------------ASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGA 166
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD+ P KD+VSWN +I AY G+M A E+F ++ ++V++WN M++GY+R +
Sbjct: 167 ARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSH 226
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD----NGLASNPHA 241
+ ++LF++M+ KPD +T+ S+LSACA+ G L+ G R+H +D NG
Sbjct: 227 LHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV--L 284
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
ALIDMYAKCGS++ + EVF+ + KDV WN+++ GLALHG+ ++ + +M V
Sbjct: 285 GNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKV 344
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
+ D+ITF+ +L ACSH G+V +G E F+ M+ + V ++HYGCMVD+LGRA LL A
Sbjct: 345 RPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAF 404
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
E I+ M EP I LLSAC +H ++E+ + + N S G+ ++ +N+YAS
Sbjct: 405 EFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDES-GDYVLLSNIYASV 463
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G+W + + R +M+D+G+ K A S + +H+ L G
Sbjct: 464 GEWFGSEKMRKLMDDSGVNKEADSERL-----HHRLLFG 497
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 140/335 (41%), Gaps = 45/335 (13%)
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ S A G I A +FD++P D +N+LI + A ++ +ML +
Sbjct: 17 LFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGG 76
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
V+PD LT VL AC +G+ +TG ++H +
Sbjct: 77 ---------------------------GVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVV 109
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G S+ ALI M+A CG++ + +F +D W+AMI G A G AA
Sbjct: 110 KAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARD 169
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L D C D +++ +++A + G + ELF ++ + R + + M+
Sbjct: 170 LF----DECPVKDLVSWNVMITAYAKRGDMALARELFDQVPE-----RDVVSWNVMISGY 220
Query: 352 GRARLLDRAIELIEAMPF---EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
R A+EL E M +P + +LLSAC DL++G R+ + + +
Sbjct: 221 VRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSL--SDMFSRN 278
Query: 409 GELMMFAN----LYASCGQWEEANRWRNMMNDTGI 439
G ++ N +YA CG + A+ M D +
Sbjct: 279 GFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDV 313
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 248/409 (60%), Gaps = 4/409 (0%)
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
R +D+A ++F +MPE+D+I+W +M+ + G++D A L D MP+++V S+N MI GYA
Sbjct: 205 RRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYA 264
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ ++ A +F+++P +++ SWN++I + G++E+A + F KM KNV+TW +++G
Sbjct: 265 QNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISG 324
Query: 179 YLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
+++ E + +F EM+A N VKP+ T SVL AC+ L +L G +IH +
Sbjct: 325 HVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQE 384
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGE 295
+ALI+MY+KCG +E + ++F + +DV WN MI A HG+G+ A+ L E
Sbjct: 385 VADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDE 444
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + D++T+I LLSACSHAGLV EG +LF + +D + + +H+ C+VDL GRA
Sbjct: 445 MQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAG 504
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L A + I+ + +P+ S+ ALL+ C +H +++G A+ + ++ + G ++ +
Sbjct: 505 RLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLL-ETEPENAGTYLVLS 563
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YAS G+W EA R M D G+ K G S IEV + H F+ G H
Sbjct: 564 NIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSH 612
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 153/291 (52%), Gaps = 40/291 (13%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TAL+ Y I++A ++F+ MP K++I+WN+M++ +A G +D A+ L + MP
Sbjct: 128 NVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMP 187
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++V S+N +I+ + + ++ A+ +F+++P +DV+SW +++ + G ++ A +F K
Sbjct: 188 ERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDK 247
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M V+NV++WNTM+ GY ++ E LF++M P+ L S T
Sbjct: 248 MPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQM------PE-----------RELSSWNT- 289
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+I + + G +E++++ FYK K+V W A+I G
Sbjct: 290 ---------------------MITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQD 328
Query: 284 GYGYAALKLLGEMNDS-CVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G ALK+ EM + VK ++ TF+ +L ACS + EG ++ + K
Sbjct: 329 GRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISK 379
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 201/417 (48%), Gaps = 55/417 (13%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-PLKDVTS 109
L+ G I +A +VFE+MP++D+++W +++ + CG ++ A L D +K+V +
Sbjct: 72 LITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVT 131
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ ++SGY R +I AR +FD +P K+V+SWN++I Y G +++A ++F+ M +NV
Sbjct: 132 WTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNV 191
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++WNT++T +++ + E +LF+ M + D ++ T++++ + G ++ AR+
Sbjct: 192 VSWNTVITAFMQRRRVDEAQELFNRMP----ERDVISWTTMVAGLSKNGRIDD-ARL--- 243
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
D N + +I YA+ ++++ ++F + +++ WN MI G +G A
Sbjct: 244 LFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERA 303
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+ +M++ V +T+ ++S G +E ++FS M+ V + G V
Sbjct: 304 VDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFSEMQAANNVK---PNEGTFVS 356
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE--IGDRVAKMVCAKSNYLS 407
+LG S L AL IHQ + + VA +V A
Sbjct: 357 VLGAC-------------------SKLAALCEGQQIHQIISKTVYQEVADVVSA------ 391
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+Y+ CG+ E A R + +D I V+ NG + G GH
Sbjct: 392 ------LINMYSKCGELELA---RKIFDDGSI---GHRDVVSWNGMIAAYAHHGHGH 436
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 15/247 (6%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + +F +L A L++ C G +H KT + V +AL+ MY ++ A
Sbjct: 347 VKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELAR 406
Query: 66 KVFE--KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYAR 119
K+F+ + +D+++WN M+ A+A G A+ L D M D ++ ++S +
Sbjct: 407 KIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSH 466
Query: 120 IGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWN 173
G + +F+ + + + L+ + AG +++A + K + VK + W
Sbjct: 467 AGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWA 526
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-ANLGSLETGARIHVYATD 232
++ G +I++ L E K +P+ VLS A+ G A + + D
Sbjct: 527 ALLAG-CNVHGHIDLGKLTAE-KLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKD 584
Query: 233 NGLASNP 239
GL P
Sbjct: 585 KGLKKQP 591
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 158/405 (39%), Positives = 236/405 (58%), Gaps = 3/405 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A K+F++MPE++++AW +M+ A G ++ A L D MP ++V S+N MISGYAR
Sbjct: 176 IDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARN 235
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
I A +F K+P +D+ SWN +I + +E+A E+F KM +NV+TW TM+ GYL
Sbjct: 236 HMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYL 295
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+S + LF+ M ++P+ +T + AC+NL L G ++H +
Sbjct: 296 QSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTF 355
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ L+++YAKCG I + +VF S+ KDV WN MI A HG G A+ L +M ++
Sbjct: 356 IESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENG 415
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
K +D+T++GLLSACSH+GLV EG +F M KD + + EHY C++DL RA L A
Sbjct: 416 YKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDA 475
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYA 419
LI + EP+ ++ ALL C H + IGD A+ ++ A+ N + G + N+YA
Sbjct: 476 KRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPN--NAGTYTLLCNIYA 533
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G+W+EA + R+ MND G+ K G S IEV H F++ H
Sbjct: 534 SAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVANKVHVFVSRDKSH 578
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 144/284 (50%), Gaps = 39/284 (13%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TALL Y +D+A +F +MPE+++++WN+ML+A+ S G++ A L + MP
Sbjct: 97 NVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMP 156
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++D S+NI+++ R G I AR +FD++P ++V++W +++ +G + +A +F
Sbjct: 157 VRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDG 216
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +NV++WN M++GY R+ + E DLF +M ++ + +T
Sbjct: 217 MPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITG-------------- 262
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+ + ++E++ E+F K ++V W M+ G
Sbjct: 263 -------------------------FIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQS 297
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
AL+L M ++ + +TF+G + ACS+ + EG ++
Sbjct: 298 IQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQV 341
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 161/348 (46%), Gaps = 21/348 (6%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA-KDV 138
N + A+ G++ A +L D P +DV S+ +++ YA G +H AR +FD+ A ++V
Sbjct: 39 NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRPDARRNV 98
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
V+W +L+ Y AG +++A +F +M +NV++WNTM+ Y S + LF+ M
Sbjct: 99 VTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPV- 157
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
D + +L+A G+++ ++ D N A T ++ A+ GS+ ++
Sbjct: 158 ---RDAGSWNILLAALVRSGNIDKARKLF----DRMPERNVMAWTTMVAGIARSGSVNEA 210
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+F ++V WNAMI G A + A L +M + + +I G + +
Sbjct: 211 RALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKN-- 268
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESI 375
++ ELF +M + R + + M++ ++ + A++L M + P +
Sbjct: 269 --LERAQELFDKMPR-----RNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVT 321
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
+ AC L G +V +M+C NLYA CG+
Sbjct: 322 FLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGE 369
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 13/246 (5%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + +F + A L+ G +H KT F ++++ L+ +Y I A
Sbjct: 314 GIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILA 373
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYAR 119
KVF EKD+I+WN M+ A+A G A+ L + M DVT ++S +
Sbjct: 374 RKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVG-LLSACSH 432
Query: 120 IGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT-WN 173
G + IF D+ A + LI + AG + A + + V+ T WN
Sbjct: 433 SGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWN 492
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
++ G S + DL + T T + + A+ G + A+I D
Sbjct: 493 ALLGG-CNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDR 551
Query: 234 GLASNP 239
GL P
Sbjct: 552 GLKKQP 557
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 281/505 (55%), Gaps = 47/505 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLR 59
M + G + D +F LL+ ++ +H + G Y++ +L+K Y
Sbjct: 56 MLQNGTYPDRQTFLYLLQTTKFVAEV---KQIHCHALVFGLLSKEEYLRNSLIKRYVDNG 112
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCG------QMDHAMKLIDLMP---------- 103
C + A ++F++M +++++++N+M+ FA G ++ H M+ L P
Sbjct: 113 CFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLL 172
Query: 104 -----------------------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
++ +N ++ Y + ++ AR +FD KD VS
Sbjct: 173 LCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVS 232
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
WN++I Y GE+E A ++F ++ +++++WN++++GY ++ Y+ V LF M A NV
Sbjct: 233 WNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENV 292
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KPD +T+ +++SA A +G+L+ G IH A + +ALIDMY KCGSIE++
Sbjct: 293 KPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFV 352
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F + KDV W MI G A HG+G AL+L M K +D+TF+ +L+ACSH+GL
Sbjct: 353 IFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGL 411
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA-RLLDRAIELIEAMPFEPTESILGAL 379
V EG ++FS M+K + + +EHYGC+VDLL R+ RLLD AI +IE MP EP+ SI GA+
Sbjct: 412 VDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLD-AIGVIEKMPMEPSRSIWGAV 470
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
LSAC +H+++E+ +R A M K +G ++ +N+YA+CG+W ++ R +MN G+
Sbjct: 471 LSACRMHRNMELAER-ALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV 529
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGH 464
K AG S + V+G H F A H
Sbjct: 530 KKIAGCSSVAVDGMVHDFTASNKQH 554
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/347 (21%), Positives = 141/347 (40%), Gaps = 75/347 (21%)
Query: 62 DDAFKVFEKM------PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS 115
+ AF ++ M P++ + F + + H L+ + K+ N +I
Sbjct: 47 EKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIK 106
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
Y G AR +FD++ ++VVS+N++IL + G +
Sbjct: 107 RYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNI--------------------- 145
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ +++LF +M++ ++PD T+ +L C LG + G +H +
Sbjct: 146 ----------LGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIG 195
Query: 236 ASNPHATTALIDMYAKC-------------------------------GSIEQSLEVFYK 264
+SN AL+DMY KC G +E + ++F +
Sbjct: 196 SSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQ 255
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALK-LLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+D+ WN++I G A +G Y +K L M VK D +T + L+SA + G + +
Sbjct: 256 IPTRDIVSWNSLISGYAQNG-DYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQ 314
Query: 324 GCELFSRMEKDFGVTRKLEHY--GCMVDLLGRARLLDRAIELIEAMP 368
G + K + K+E + ++D+ + ++RA + +P
Sbjct: 315 GRWIHGLAVK---MLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP 358
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 8/204 (3%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N+ +NTM+ G+ S + ++ M PD T +L + ++ +IH
Sbjct: 31 NLYIFNTMILGFPFSNE--KAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVK---QIH 85
Query: 228 VYATDNGLASNP-HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+A GL S + +LI Y G E + ++F + ++V +N MILG A G
Sbjct: 86 CHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNI 145
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
L+L +M ++ DD T +GLL C G + G + +++EK G + L Y
Sbjct: 146 LGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIG-SSNLILYNA 204
Query: 347 MVDLLGRARLLDRAIELIEAMPFE 370
++D+ + L A ++ + P E
Sbjct: 205 LLDMYVKCNELKLARKVFDG-PME 227
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 248/409 (60%), Gaps = 4/409 (0%)
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
R +D+A ++F +MPE+D+I+W +M+ + G++D A L D MP+++V S+N MI GYA
Sbjct: 205 RRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYA 264
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ ++ A +F+++P +++ SWN++I + G++E+A + F KM KNV+TW +++G
Sbjct: 265 QNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISG 324
Query: 179 YLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
+++ E + +F EM+A N VKP+ T SVL AC+ L +L G +IH +
Sbjct: 325 HVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQE 384
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGE 295
+ALI+MY+KCG +E + ++F + +DV WN MI A HG+G+ A+ L E
Sbjct: 385 VADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDE 444
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + D++T+I LLSACSHAGLV EG +LF + +D + + +H+ C+VDL GRA
Sbjct: 445 MQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAG 504
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L A + I+ + +P+ S+ ALL+ C +H +++G A+ + ++ + G ++ +
Sbjct: 505 RLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLL-ETEPENAGTYLVLS 563
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YAS G+W EA R M D G+ K G S IEV + H F+ G H
Sbjct: 564 NIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSH 612
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 202/417 (48%), Gaps = 55/417 (13%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-PLKDVTS 109
L+ G I +A +VFE+MP++D+++W +++ + CG ++ A L D +K+V +
Sbjct: 72 LITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVT 131
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ ++SGY R +I AR +FD +P K+V+SWN++I Y G +++A ++F+KM +NV
Sbjct: 132 WTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNV 191
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++WNT++T +++ + E +LF+ M + D ++ T++++ + G ++ AR+
Sbjct: 192 VSWNTVITAFMQRRRVDEAQELFNRMP----ERDVISWTTMVAGLSKNGRIDD-ARL--- 243
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
D N + +I YA+ ++++ ++F + +++ WN MI G +G A
Sbjct: 244 LFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERA 303
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+ +M++ V +T+ ++S G +E ++FS M+ V + G V
Sbjct: 304 VDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFSEMQAANNVK---PNEGTFVS 356
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE--IGDRVAKMVCAKSNYLS 407
+LG S L AL IHQ + + VA +V A
Sbjct: 357 VLGAC-------------------SKLAALCEGQQIHQIISKTVYQEVADVVSA------ 391
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+Y+ CG+ E A R + +D I V+ NG + G GH
Sbjct: 392 ------LINMYSKCGELELA---RKIFDDGSI---GHRDVVSWNGMIAAYAHHGHGH 436
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 153/291 (52%), Gaps = 40/291 (13%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TAL+ Y I++A ++F+ MP K++I+WN+M++ +A G +D A+ L + MP
Sbjct: 128 NVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMP 187
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++V S+N +I+ + + ++ A+ +F+++P +DV+SW +++ + G ++ A +F K
Sbjct: 188 ERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDK 247
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M V+NV++WNTM+ GY ++ E LF++M P+ L S T
Sbjct: 248 MPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQM------PE-----------RELSSWNT- 289
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+I + + G +E++++ FYK K+V W A+I G
Sbjct: 290 ---------------------MITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQD 328
Query: 284 GYGYAALKLLGEMNDS-CVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G ALK+ EM + VK ++ TF+ +L ACS + EG ++ + K
Sbjct: 329 GRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISK 379
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 15/247 (6%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + +F +L A L++ C G +H KT + V +AL+ MY ++ A
Sbjct: 347 VKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELAR 406
Query: 66 KVFE--KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYAR 119
K+F+ + +D+++WN M+ A+A G A+ L D M D ++ ++S +
Sbjct: 407 KIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSH 466
Query: 120 IGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWN 173
G + +F+ + + + L+ + AG +++A + K + VK + W
Sbjct: 467 AGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWA 526
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-ANLGSLETGARIHVYATD 232
++ G +I++ L E K +P+ VLS A+ G A + + D
Sbjct: 527 ALLAG-CNVHGHIDLGKLTAE-KLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKD 584
Query: 233 NGLASNP 239
GL P
Sbjct: 585 KGLKKQP 591
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 281/505 (55%), Gaps = 47/505 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLR 59
M + G + D +F LL+ ++ +H + G Y++ +L+K Y
Sbjct: 121 MLQNGTYPDRQTFLYLLQTTKFVAEV---KQIHCHALVFGLLSKEEYLRNSLIKRYVDNG 177
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCG------QMDHAMKLIDLMP---------- 103
C + A ++F++M +++++++N+M+ FA G ++ H M+ L P
Sbjct: 178 CFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLL 237
Query: 104 -----------------------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
++ +N ++ Y + ++ AR +FD KD VS
Sbjct: 238 LCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVS 297
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
WN++I Y GE+E A ++F ++ +++++WN++++GY ++ Y+ V LF M A NV
Sbjct: 298 WNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENV 357
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KPD +T+ +++SA A +G+L+ G IH A + +ALIDMY KCGSIE++
Sbjct: 358 KPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFV 417
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F + KDV W MI G A HG+G AL+L M K +D+TF+ +L+ACSH+GL
Sbjct: 418 IFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGL 476
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA-RLLDRAIELIEAMPFEPTESILGAL 379
V EG ++FS M+K + + +EHYGC+VDLL R+ RLLD AI +IE MP EP+ SI GA+
Sbjct: 477 VDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLD-AIGVIEKMPMEPSRSIWGAV 535
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
LSAC +H+++E+ +R A M K +G ++ +N+YA+CG+W ++ R +MN G+
Sbjct: 536 LSACRMHRNMELAER-ALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV 594
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGH 464
K AG S + V+G H F A H
Sbjct: 595 KKIAGCSSVAVDGMVHDFTASNKQH 619
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/347 (21%), Positives = 141/347 (40%), Gaps = 75/347 (21%)
Query: 62 DDAFKVFEKM------PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS 115
+ AF ++ M P++ + F + + H L+ + K+ N +I
Sbjct: 112 EKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIK 171
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
Y G AR +FD++ ++VVS+N++IL + G +
Sbjct: 172 RYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNI--------------------- 210
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ +++LF +M++ ++PD T+ +L C LG + G +H +
Sbjct: 211 ----------LGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIG 260
Query: 236 ASNPHATTALIDMYAKC-------------------------------GSIEQSLEVFYK 264
+SN AL+DMY KC G +E + ++F +
Sbjct: 261 SSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQ 320
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALK-LLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+D+ WN++I G A +G Y +K L M VK D +T + L+SA + G + +
Sbjct: 321 IPTRDIVSWNSLISGYAQNG-DYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQ 379
Query: 324 GCELFSRMEKDFGVTRKLEHY--GCMVDLLGRARLLDRAIELIEAMP 368
G + K + K+E + ++D+ + ++RA + +P
Sbjct: 380 GRWIHGLAVK---MLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP 423
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 8/204 (3%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N+ +NTM+ G+ S + ++ M PD T +L + ++ +IH
Sbjct: 96 NLYIFNTMILGFPFSNE--KAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVK---QIH 150
Query: 228 VYATDNGLASNP-HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+A GL S + +LI Y G E + ++F + ++V +N MILG A G
Sbjct: 151 CHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNI 210
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
L+L +M ++ DD T +GLL C G + G + +++EK G + L Y
Sbjct: 211 LGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIG-SSNLILYNA 269
Query: 347 MVDLLGRARLLDRAIELIEAMPFE 370
++D+ + L A ++ + P E
Sbjct: 270 LLDMYVKCNELKLARKVFDG-PME 292
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 265/512 (51%), Gaps = 51/512 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G + YSF +L A L+ G+ +H K+ F VY+ +AL+ MY
Sbjct: 143 MHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGN 202
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------P----------- 103
++DA +VF++M ++++++WNS++ F G A+ + +M P
Sbjct: 203 VNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISA 262
Query: 104 -----------------------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
D+ N + YA+ +I AR+IFD +P ++V++
Sbjct: 263 CASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIA 322
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
S+I Y A + A MF KM +NV++WN ++ GY ++ E + LF +K +V
Sbjct: 323 ETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV 382
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA------SNPHATTALIDMYAKCGS 254
P + + ++L ACA+L L G + HV+ +G + +LIDMY KCG
Sbjct: 383 CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+E+ VF K +D WNAMI+G A +GYG AL+L EM +S K D IT IG+LSA
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSA 502
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
C HAG V+EG FS M +DFGV +HY CMVDLLGRA L+ A +IE MP +P
Sbjct: 503 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSV 562
Query: 375 ILGALLSACVIHQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRN 432
I G+LL+AC +H+++ +G VA+ + SN G ++ +N+YA G+WE+ R
Sbjct: 563 IWGSLLAACKVHRNITLGKYVAEKLLEVEPSN---SGPYVLLSNMYAELGKWEDVMNVRK 619
Query: 433 MMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M G+ K G S I++ G H F+ H
Sbjct: 620 SMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSH 651
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 168/343 (48%), Gaps = 44/343 (12%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H IK+GF +++Q L+ Y ++D +VF+KMP+++I WNS++ G
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA---------------RYIFDKVPA- 135
+D A L MP +D ++N M+SG+A+ + A Y F V +
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 136 -----------------------KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
DV ++L+ Y+ G + A +F +M +NV++W
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N+++T + ++ +E +D+F M V+PD +T+ SV+SACA+L +++ G +H
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
Query: 233 NG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N L ++ + A +DMYAKC I+++ +F +++V +MI G A+ AA
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARL 341
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+ +M + V +++ L++ + G +E LF ++++
Sbjct: 342 MFTKMAERNV----VSWNALIAGYTQNGENEEALSLFCLLKRE 380
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 140/259 (54%), Gaps = 2/259 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y++ G + R +FDK+P +++ +WNS++ T G +++A +F+ M ++
Sbjct: 59 NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
TWN+MV+G+ + E + F M K G V +Y + SVLSAC+ L + G ++H
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEY-SFASVLSACSGLNDMNKGVQVHSL 177
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ S+ + +AL+DMY+KCG++ + VF + ++V WN++I +G A
Sbjct: 178 IAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEA 237
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L + M +S V+ D++T ++SAC+ ++ G E+ R+ K+ + + VD
Sbjct: 238 LDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVD 297
Query: 350 LLGRARLLDRAIELIEAMP 368
+ + + A + ++MP
Sbjct: 298 MYAKCSRIKEARFIFDSMP 316
>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 156/413 (37%), Positives = 244/413 (59%), Gaps = 5/413 (1%)
Query: 52 LKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN 111
L+ YG + A F KMP KDI +WN+++ FA GQM A L +MP K+ S++
Sbjct: 147 LRSYG----VKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWS 202
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
MISGY G + +A ++ V K VV +++ Y G++E A +F++M VKN++T
Sbjct: 203 AMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVT 262
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN+M+ GY+ + + + +F M V+P+ L+++SVL C+NL +L G ++H +
Sbjct: 263 WNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVS 322
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ L+ + A T+LI MY KCG ++ + ++F + KDV WNAMI G A HG G AL
Sbjct: 323 KSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALH 382
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M + +K D ITF+ ++ AC+HAG V G + F M+K+FG+ K HY C++DLL
Sbjct: 383 LFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLL 442
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GRA LD A+ LI+ MPF P +I G LL AC IH++L++ + A+ + + G +
Sbjct: 443 GRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYV 502
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YA+ +W++ + R MM + +VK G S IE+ H+F + H
Sbjct: 503 QL-ANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLH 554
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 149/295 (50%), Gaps = 10/295 (3%)
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI-GKIHSARYIFDKV 133
D+++ N + +F ++ A + + M ++ ++N M+SGY ++ GK+ A +FDK+
Sbjct: 72 DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131
Query: 134 PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD 193
P D VS+N +++ Y + ++ A F KM VK++ +WNT+++G+ ++ + DLF
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
M N ++ ++++S G LE ++ + G+ S TA++ Y K G
Sbjct: 192 VMPEKN----GVSWSAMISGYVEHGDLEAAEELY---KNVGMKSVV-VETAMLTGYMKFG 243
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+E + +F + VK++ WN+MI G + LK+ M +S V+ + ++ +L
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
CS+ + G ++ + K +++ ++ + + LD A +L MP
Sbjct: 304 GCSNLSALPLGRQMHQLVSKS-PLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP 357
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V V+TA+L Y ++ A ++F++M K+++ WNSM+ + + + +K+ M
Sbjct: 229 VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIE 288
Query: 105 KDVT----SFNIMISGYARIGKIHSAR---YIFDKVP-AKDVVSWNSLILAYTNAGEMEK 156
V S + ++ G + + + R + K P +KD + SLI Y G+++
Sbjct: 289 SRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDS 348
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A ++F +M K+VITWN M++GY + + + LFD+M+ G +KPD++T +V+ AC +
Sbjct: 349 AWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNH 408
Query: 217 LGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
G ++ G + + G+ + P T +ID+ + G +++++ +
Sbjct: 409 AGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSL 454
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 131/302 (43%), Gaps = 25/302 (8%)
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI-EVVDLFD 193
A DVVS N I ++ A ++E A +F+KM V+ +TWNTM++GY + + E +LFD
Sbjct: 70 ASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFD 129
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT-TALIDMYAKC 252
++ +PD ++ +++ C L S A + + N + A+ LI +A+
Sbjct: 130 KIP----EPDSVSY-NIMLVCY-LRSYGVKAALAFF---NKMPVKDIASWNTLISGFAQN 180
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G ++++ ++F K+ W+AMI G HG AA +L + V + G +
Sbjct: 181 GQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYM 240
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PF 369
G V+ +F RM + L + M+ + +++ + M
Sbjct: 241 K----FGKVELAERIFQRM-----AVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRV 291
Query: 370 EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
P L ++L C L +G ++ ++V ++Y CG + A
Sbjct: 292 RPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSA-- 349
Query: 430 WR 431
W+
Sbjct: 350 WK 351
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 110/273 (40%), Gaps = 50/273 (18%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E V + S +L LS+ +G +H K+ T+L+ MY
Sbjct: 286 MIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGD 345
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A+K+F +MP KD+I WN+M+ SGYA+
Sbjct: 346 LDSAWKLFLEMPRKDVITWNAMI-------------------------------SGYAQH 374
Query: 121 GKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVIT 171
G A ++FDK+ D +++ ++ILA +AG ++ + FK M + +
Sbjct: 375 GAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVH 434
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
+ ++ R+ E V L EM P ++L AC +L+ +A
Sbjct: 435 YTCVIDLLGRAGRLDEAVSLIKEMP---FTPHAAIYGTLLGACRIHKNLDLAE----FAA 487
Query: 232 DNGLASNPHATTA---LIDMYAKCGSIEQSLEV 261
N L +P + T L ++YA +Q +V
Sbjct: 488 RNLLNLDPTSATGYVQLANIYAATNKWDQVAKV 520
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 168/499 (33%), Positives = 273/499 (54%), Gaps = 40/499 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + ++ P +LKA S +G+ +H Q+ K G H VQ A+L +Y + I A
Sbjct: 129 GILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSA 188
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHA------MKLIDLMP--------------- 103
+VF+ + E+ +++WNSM++ ++ G+ + A M+ + L P
Sbjct: 189 RRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKH 248
Query: 104 ----LKDVTSFNIMISG--------------YARIGKIHSARYIFDKVPAKDVVSWNSLI 145
L +++++G YA+ G + A+ +FD++ KDVVSW +I
Sbjct: 249 GNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMI 308
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
AY N G ++ A E F +M KNV++WN+++ +++ LY E VDLF M V +
Sbjct: 309 NAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDT 368
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ ++LS+C+++G L G + H Y DN + + A+IDMYAKCG+++ +++VF+
Sbjct: 369 TLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGM 428
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
K+ WN +I LALHGYG A+++ +M S V D+ITF GLLSACSH+GLV G
Sbjct: 429 PEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQ 488
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M FG++ +EHY CMVDLLGR LL AI LI+ MP +P + ALL AC
Sbjct: 489 HYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRT 548
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
+ +L IG ++ K + Y + G ++ +N+Y+ +W++ +++ GI K
Sbjct: 549 YGNLAIGKQIMKQLLELGRY-NSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAI 607
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IE++G ++F+ H
Sbjct: 608 SFIEIDGCCYQFMVDDKRH 626
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 161/336 (47%), Gaps = 53/336 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY---GS 57
MQE+G+ D ++ LL + + +G +H + TG V AL+ MY G+
Sbjct: 226 MQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGN 285
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI--- 114
L+C A VF++M +KD+++W M++A+A+ G +D A++ + MP K+V S+N +I
Sbjct: 286 LKC---AKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCH 342
Query: 115 --------------------------------SGYARIGKI----HSARYIFDKVPAKDV 138
S + +G + + YIFD
Sbjct: 343 VQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSA 402
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
N++I Y G ++ A ++F M KN ++WN ++ E +++F++M+A
Sbjct: 403 TLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQAS 462
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDN---GLASNPHATTALIDMYAKCGSI 255
V PD +T T +LSAC++ G ++TG H + N G++ + ++D+ + G +
Sbjct: 463 GVCPDEITFTGLLSACSHSGLVDTGQ--HYFEIMNLTFGISPDVEHYACMVDLLGRRGLL 520
Query: 256 EQSLEVFYKSQVK-DVFCWNAMILGLALHGYGYAAL 290
+++ + K VK DV W+A+ LG A YG A+
Sbjct: 521 GEAISLIKKMPVKPDVVVWSAL-LG-ACRTYGNLAI 554
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 170/403 (42%), Gaps = 47/403 (11%)
Query: 23 LSSSCIGLM----LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIA 78
L CI L +H Q I G V L+ LR + A K+F+++P+ +
Sbjct: 42 LIDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFM 101
Query: 79 WNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKD- 137
+N ++ +++ ++ L M + I + S ++ V A+
Sbjct: 102 FNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSF 161
Query: 138 -------VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
N+++ Y G + A +F + + +++WN+M+ GY + E V
Sbjct: 162 KLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVL 221
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
+F EM+ ++PD T+ +LS G+ + G +H++ G+ + T AL+DMYA
Sbjct: 222 MFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYA 281
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN------------- 297
KCG+++ + VF + KDV W MI A HG AL+ +M
Sbjct: 282 KCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWC 341
Query: 298 ------------------DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
DS V A+D T + +LS+CSH G + G + S + D +T
Sbjct: 342 HVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIF-DNNITL 400
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES---ILGAL 379
++D+ + L A+++ MP + S I+GAL
Sbjct: 401 SATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGAL 443
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 158/445 (35%), Positives = 247/445 (55%), Gaps = 32/445 (7%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
L+ Y + DA ++F++MP +D+I+WN+M+ +A G + A +L + P++DV ++
Sbjct: 207 LMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTW 266
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
M+SGY + G + AR FD++P K+ +S+N+++ Y +M AGE+F+ M +N+
Sbjct: 267 TAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNIS 326
Query: 171 TWNTMVTGY-------------------------------LRSQLYIEVVDLFDEMKAGN 199
+WNTM+TGY ++ Y E +++F EMK
Sbjct: 327 SWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG 386
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+ T + LS CA++ +LE G ++H G + AL+ MY KCGS +++
Sbjct: 387 ESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEAN 446
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF + KDV WN MI G A HG+G AL L M + VK D+IT +G+LSACSH+G
Sbjct: 447 DVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSG 506
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
L+ G E F M++D+ V +HY CM+DLLGRA L+ A L+ MPF+P + GAL
Sbjct: 507 LIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGAL 566
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L A IH + E+G++ A+MV K + G ++ +NLYA+ G+W + + R+ M + G+
Sbjct: 567 LGASRIHGNTELGEKAAEMVF-KMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGV 625
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGH 464
K G S +EV H F G H
Sbjct: 626 QKVTGYSWVEVQNKIHTFSVGDCFH 650
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 183/371 (49%), Gaps = 26/371 (7%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A +F+KMPE+D+ +WN ML + ++ A KL DLMP KDV S+N M+SGYA+ G +
Sbjct: 96 ARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFV 155
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
AR +F+K+P ++ +SWN L+ AY + G +++A +F+ +I+WN ++ GY++
Sbjct: 156 DEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRN 215
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
+ + LFD M +V ++ +++S A +G L R+ + + T
Sbjct: 216 MLGDARQLFDRMPVRDV----ISWNTMISGYAQVGDLSQAKRLF----NESPIRDVFTWT 267
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
A++ Y + G ++++ + F + VK+ +NAM+ G Y + + GE+ ++
Sbjct: 268 AMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQ----YKKMVIAGELFEAMPCR 323
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+ ++ +++ G + + +LF M + R + ++ + + A+ +
Sbjct: 324 NISSWNTMITGYGQNGGIAQARKLFDMMPQ-----RDCVSWAAIISGYAQNGHYEEALNM 378
Query: 364 IEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD---GELMMFANL 417
M + S LS C LE+G +V V K+ + + G ++ +
Sbjct: 379 FVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQV-VKAGFETGCFVGNALL--GM 435
Query: 418 YASCGQWEEAN 428
Y CG +EAN
Sbjct: 436 YFKCGSTDEAN 446
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 144/285 (50%), Gaps = 8/285 (2%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A+L Y +D+A +VF KMP ++ I+WN +L A+ G++ A +L + ++
Sbjct: 143 NAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELI 202
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N ++ GY + + AR +FD++P +DV+SWN++I Y G++ +A +F + +++
Sbjct: 203 SWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRD 262
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW MV+GY+++ + E FDEM N ++ ++L+ + +
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNE----ISYNAMLAGYVQYKKMVIAGELFE 318
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
++S +I Y + G I Q+ ++F +D W A+I G A +G+
Sbjct: 319 AMPCRNISS----WNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEE 374
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
AL + EM ++ TF LS C+ ++ G ++ ++ K
Sbjct: 375 ALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVK 419
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 148/299 (49%), Gaps = 17/299 (5%)
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
K + DI+ WN + + G D A+++ + MP + S+N MISGY R K AR +
Sbjct: 40 KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FDK+P +D+ SWN ++ Y + +A ++F M K+V++WN M++GY ++ E
Sbjct: 100 FDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAR 159
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
++F++M N ++ +L+A + G L+ R+ ++ L S L+ Y
Sbjct: 160 EVFNKMPHRNS----ISWNGLLAAYVHNGRLKEARRLFESQSNWELIS----WNCLMGGY 211
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
K + + ++F + V+DV WN MI G A G A +L N+S ++ D T+
Sbjct: 212 VKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF---NESPIR-DVFTWT 267
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++S G+V E + F M ++ Y M+ + + + A EL EAMP
Sbjct: 268 AMVSGYVQNGMVDEARKYFDEMPVKNEIS-----YNAMLAGYVQYKKMVIAGELFEAMP 321
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 133/267 (49%), Gaps = 14/267 (5%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+++ G+ + C ++ ++ YG I A K+F+ MP++D ++W +++ +A
Sbjct: 310 MVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQN 369
Query: 90 GQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS----W 141
G + A+ + M + ++F+ +S A I + + + +V +
Sbjct: 370 GHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVG 429
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+L+ Y G ++A ++F+ + K+V++WNTM+ GY R + + LF+ MK VK
Sbjct: 430 NALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVK 489
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSL 259
PD +T+ VLSAC++ G ++ G + Y+ D P + T +ID+ + G +E++
Sbjct: 490 PDEITMVGVLSACSHSGLIDRGTE-YFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEA- 547
Query: 260 EVFYKSQVKD--VFCWNAMILGLALHG 284
E ++ D W A++ +HG
Sbjct: 548 ENLMRNMPFDPGAASWGALLGASRIHG 574
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 44/245 (17%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G ++ +F L +++ +G +HGQ +K GF +V ALL MY
Sbjct: 382 MKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGS 441
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----------- 109
D+A VFE + EKD+++WN+M+ +A G A+ L + M V
Sbjct: 442 TDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSA 501
Query: 110 -----------------------------FNIMISGYARIGKIHSARYIFDKVP-AKDVV 139
+ MI R G++ A + +P
Sbjct: 502 CSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAA 561
Query: 140 SWNSLILA---YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
SW +L+ A + N EKA EM KM +N + + Y S +++V + +M+
Sbjct: 562 SWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMR 621
Query: 197 AGNVK 201
V+
Sbjct: 622 EAGVQ 626
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 176/497 (35%), Positives = 266/497 (53%), Gaps = 44/497 (8%)
Query: 7 HADN-YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
H N Y+FP LLK+ + G +H Q +K G Y T+L+ MY ++DA
Sbjct: 79 HVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDAR 138
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY-------- 117
KVF+ ++D+++ +++ +AS G + A K+ D + +DV S+N MI+GY
Sbjct: 139 KVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEE 198
Query: 118 ---------------------------ARIGKIHSARYIFDKVP-----AKDVVSWNSLI 145
A+ G I R I V + N+ I
Sbjct: 199 ALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFI 258
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y+ G++E A +F+ + K+V++WNT++ GY LY E + LF EM P+ +
Sbjct: 259 GLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 318
Query: 206 TVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T+ SVL ACA+LG+++ G IHVY G+ + T+LIDMYAKCG IE + +VF
Sbjct: 319 TMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFN 378
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
K + WNAMI G A+HG AA L M + ++ DDIT +GLLSACSH+GL+
Sbjct: 379 SMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDL 438
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G +F + +D+ +T KLEHYGCM+DLLG A L A E+I MP EP I +LL AC
Sbjct: 439 GRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKAC 498
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
+H +LE+ + A+ + + + G ++ +N+YA+ G+WE+ R R ++N G+ K
Sbjct: 499 KMHGNLELAESFAQKL-MEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVP 557
Query: 444 GSSVIEVNGSYHKFLAG 460
G S IE++ H+F+ G
Sbjct: 558 GCSSIEIDSVVHEFIIG 574
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 178/380 (46%), Gaps = 46/380 (12%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDD---AFKVFEKMPEKDIIAWNSMLDAFASC 89
H Q +KTG Y + LL++ D A VFE E +++ WN+ML AS
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61
Query: 90 ----------------------------------------GQMDHAMKLIDLMPLKDVTS 109
G+ HA +++ L D +
Sbjct: 62 SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHA-QVMKLGCELDRYA 120
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+IS YAR G++ AR +FD +DVVS +LI Y + G++ A ++F + ++V
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++WN M+TGY+ + Y E ++LF EM NV+PD T+ SVLSACA GS+E G IH
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240
Query: 230 ATD-NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
D +G S+ A I +Y+KCG +E + +F KDV WN +I G
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF-GVTRKLEHYGCM 347
AL L EM S +D+T + +L AC+H G + G + ++K GVT +
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSL 360
Query: 348 VDLLGRARLLDRAIELIEAM 367
+D+ + ++ A ++ +M
Sbjct: 361 IDMYAKCGDIEAAHQVFNSM 380
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 166/450 (36%), Positives = 254/450 (56%), Gaps = 33/450 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V DN++FP +LKA L G +HG+ ++ GF +V V+ LL
Sbjct: 98 MDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLL-------- 149
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
VF A CG + A + D DV +++ +I+GYA+
Sbjct: 150 ------VFH-----------------AKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQR 186
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD++P +D+VSWN +I YT GEME A +F + +K++++WN ++ GY+
Sbjct: 187 GDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYV 246
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNP 239
L E ++LFDEM PD +T+ S+LSACA+LG LE+G ++H + N +
Sbjct: 247 LRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLST 306
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
AL+DMYAKCG+I +++ VF+ + KDV WN++I GLA HG+ +L L EM +
Sbjct: 307 LLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMT 366
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V D++TF+G+L+ACSHAG V EG F M+ + + + H GC+VD+LGRA LL
Sbjct: 367 KVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKE 426
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A I +M EP + +LL AC +H D+E+ R + + S G+ ++ +N+YA
Sbjct: 427 AFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQS-GDYVLLSNVYA 485
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
S G+W+ A R +M+D G+ K GSS +E
Sbjct: 486 SQGEWDGAENVRKLMDDNGVTKNRGSSFVE 515
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 13/286 (4%)
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+MF ++ + WNT + G +S + V L+ +M +VKPD T VL AC L
Sbjct: 62 QMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLF 121
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+ TG+ +H G SN L+ +AKCG ++ + ++F S DV W+A+I
Sbjct: 122 WVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIA 181
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
G A G A KL EM K D +++ +++ + G ++ LF D
Sbjct: 182 GYAQRGDLSVARKLFDEMP----KRDLVSWNVMITVYTKHGEMESARRLF-----DEAPM 232
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRV 395
+ + + ++ L A+EL + M P E + +LLSAC DLE G++V
Sbjct: 233 KDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKV 292
Query: 396 -AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
AK++ LS ++YA CG +A R ++ D +V
Sbjct: 293 HAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVV 338
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 212 SACANLGSLETGARIHVYATDNGLASNPH------ATTAL--IDMYAKCGSIEQSLEVFY 263
S N+G+L+ +IH NGL SN TTA+ + A I +L++F
Sbjct: 9 STITNVGTLK---QIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFA 65
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ D F WN I G + A+ L +M+ VK D+ TF +L AC+ V
Sbjct: 66 QIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNT 125
Query: 324 GCELFSRM 331
G + R+
Sbjct: 126 GSAVHGRV 133
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/470 (35%), Positives = 270/470 (57%), Gaps = 13/470 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCI-GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
G D Y+ P LKA L G H K GF G V VQ AL+ YG+ D
Sbjct: 112 GARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGD 171
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI---DLMPLKDVTSFNIMIS----G 116
A KVF++M E+D+++W ++L AF G A+ ++ D+ P +VT +++++ G
Sbjct: 172 ARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDVTP-NEVTLASVLVACGNLG 230
Query: 117 YARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
AR GK +H + F + +++ N+L+ Y +++ A +F +L +++++W M
Sbjct: 231 TARAGKAVHG--WYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVM 288
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
++G ++ + E +++F+ M+ VKPD + +++VLSACA+LG+LE+G +H Y G+
Sbjct: 289 ISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGI 348
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ H T+++DMY KCG ++ ++ +F + +K+V WNA+I G ALHG G AL
Sbjct: 349 EWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDR 408
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M S + +++TFI +L AC H+GLVQEG +LF M K + ++ +HYGCMVDLLGRA
Sbjct: 409 MVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAG 468
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L+ A ++I+AMP P LLSAC H ++ ++ M + +G ++ +
Sbjct: 469 LIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQIL-MHIHELESSGNGIYVLLS 527
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
N+YA +W + + R MN+ G+ K GSSVIEVNG +FL G HL
Sbjct: 528 NMYAVSDRWADVGKARGFMNEKGMQKEPGSSVIEVNGKTCEFLVGQQNHL 577
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 118/316 (37%), Gaps = 63/316 (19%)
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+N+LI + T+AG+ A F +LV +
Sbjct: 80 FNALISSLTHAGDPSAAFRAFALLLVAS--------------------------GAGAGA 113
Query: 201 KPDYLTVTSVLSACANL-GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+PD T+ + L ACA L G L G + H A G AL+ Y CG +
Sbjct: 114 RPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDAR 173
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF + +DV W A++ G AL +L EM+ V +++T +L AC + G
Sbjct: 174 KVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMD---VTPNEVTLASVLVACGNLG 230
Query: 320 LVQEG----------------------CELFSRMEK--------DFGVTRKLEHYGCMVD 349
+ G +++ + EK D + R + + M+
Sbjct: 231 TARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMIS 290
Query: 350 LLGRARLLDRAIELIEAMPF---EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
L + + A+E+ AM +P + +L +LSAC LE G V + + K
Sbjct: 291 GLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEW 350
Query: 407 SDGELMMFANLYASCG 422
++Y CG
Sbjct: 351 DVHVGTSVVDMYVKCG 366
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 14/189 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D +L A L + G +H + G V+V T+++ MY C
Sbjct: 308 MQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGC 367
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
+D A +F++MP K++ +WN++++ FA G+ A+ D M + +F ++
Sbjct: 368 LDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGA 427
Query: 117 YARIGKIHSARYIFDKV-------PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
G + R +F+ + P +D + ++ AG +++A ++ K M ++
Sbjct: 428 CCHSGLVQEGRQLFELMTKSYKLSPWED--HYGCMVDLLGRAGLIQEAYDVIKAMPMRPG 485
Query: 169 VITWNTMVT 177
V TW T+++
Sbjct: 486 VFTWVTLLS 494
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/546 (31%), Positives = 284/546 (52%), Gaps = 83/546 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++LGV AD ++FPL+++A ++ S + +HG ++ GF +++V L+ MYG +
Sbjct: 964 MRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGR 1023
Query: 61 IDDAFKVFEKMP-----------------------------------EKDIIAWNSMLDA 85
+DDA KVFE+M E +++ W S+L +
Sbjct: 1024 MDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSS 1083
Query: 86 FASCGQMDHAMKLIDLMPLK-----------------DVTSF------------------ 110
A CGQ M+L M ++ D+ +F
Sbjct: 1084 HARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENY 1143
Query: 111 ----NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK--- 163
N +I Y + G +++AR +F ++ K++VSWN+LI +Y + G ++A +F +
Sbjct: 1144 LFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEK 1203
Query: 164 -----MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
M+ NV++W+ ++ G+ E ++LF M+ VK + +T+ SVLS CA L
Sbjct: 1204 TDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELA 1263
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+L G IH + + + N LI+MY K GS ++ VF K + KD+ WN M+
Sbjct: 1264 ALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVA 1323
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
G +HG G A++ +M + D +TF+ +LSACSHAGLV EG ELF +M K+F V
Sbjct: 1324 GYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVE 1383
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
++EHY CMVDLLGRA LL A +++++MP EP + GALL++C +H++ E+ + A
Sbjct: 1384 PQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQ 1443
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ ++ ++ G M+ +N+YA+ G+WE++ + R G+ KT G S I+V + F
Sbjct: 1444 IFNLNSEIA-GSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFS 1502
Query: 459 AGGIGH 464
AG H
Sbjct: 1503 AGNTQH 1508
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 161/359 (44%), Gaps = 50/359 (13%)
Query: 24 SSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK---DIIAWN 80
S S + +H Q I TG ++ ++ +Y + DA +VFE P + +++ WN
Sbjct: 883 SKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWN 942
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG-------------------- 116
S+L A + G + A+++ M V+ +F ++I
Sbjct: 943 SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEM 1002
Query: 117 ---------------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
Y +IG++ AR +F+++ + VSWN+++ Y + A EMF
Sbjct: 1003 GFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMF 1062
Query: 162 KKM----LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
+ M L N++TW ++++ + R ++E ++LF M+ + + VLS +L
Sbjct: 1063 RMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDL 1122
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
+ + G IH Y G + +LI +Y K G++ + +F + + K++ WNA+I
Sbjct: 1123 AAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALI 1182
Query: 278 LGLALHGYGYAALKLLGEMNDS----CVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
A G+ A + ++ + V+ + +++ ++ + G +E ELF RM+
Sbjct: 1183 SSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQ 1241
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/490 (33%), Positives = 270/490 (55%), Gaps = 39/490 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ G+ AD+Y++P +L+A G++ S G +H +KTGF Y ++LL+MY L
Sbjct: 37 LRARGLVADSYTYPFVLRAIGVMKLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYTMLGR 96
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----------- 109
+D A KVF++MP++ ++ WN M+ + CG+ A+ L + M T
Sbjct: 97 VDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTA 156
Query: 110 ---------------------------FNIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
N ++ Y + G + A +F ++P ++++SW
Sbjct: 157 CSRAGDLSLGRRIRAYMDGVFGFSLPVANALLDMYTKNGYLEEAVKMFQQMPERNIISWT 216
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
L+ Y AG+++KA +F + K++I W M+ ++ + E + LF +M+ V+P
Sbjct: 217 ILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRVEP 276
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D TV ++L+ CAN+G+L+ G IH YA + + TALI+MY+KCG +++SL++F
Sbjct: 277 DKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIF 336
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ Q +D W A+I GLA +G AL+L EM S K D ITFIG+L+AC H GLV
Sbjct: 337 GRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVLNACCHGGLVD 396
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF-EPTESILGALLS 381
EG F M++ + + ++EHY C+V+LLG A LL A +LI MP T + GALL+
Sbjct: 397 EGRRHFQAMKEIYQIEPRIEHYSCLVNLLGHAGLLYEAEKLIRDMPVNNDTMPLFGALLT 456
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC + ++E+ +R+ K + + + ++ +N+YA+ +WEE+ R R+ M + K
Sbjct: 457 ACKAYGNVEMSERLTKRIAKEDCSQNPDVNVLMSNVYATASRWEESIRVRSKMTHPAVKK 516
Query: 442 TAGSSVIEVN 451
TAG S+IEV
Sbjct: 517 TAGCSMIEVK 526
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 2/196 (1%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ R + V+ ++ +++A + D T VL A + G ++H A
Sbjct: 15 NVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGVMKLSVEGRKVHAAAVK 74
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + + ++L++MY G ++ + +VF + + + WN M+ G AA+ L
Sbjct: 75 TGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVAL 134
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM S D +T + ++ACS AG + G + + M+ FG + L ++D+
Sbjct: 135 AEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGFS--LPVANALLDMYT 192
Query: 353 RARLLDRAIELIEAMP 368
+ L+ A+++ + MP
Sbjct: 193 KNGYLEEAVKMFQQMP 208
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/502 (34%), Positives = 279/502 (55%), Gaps = 46/502 (9%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+N++FP LL + LSS G +H IK GF ++V+ AL+ +Y ++ A +
Sbjct: 109 PNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTL 168
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSF------------- 110
F++ +D++++N+M+ +A Q + A+ L M L D +F
Sbjct: 169 FDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEP 228
Query: 111 -------------------NIMISG-----YARIGKIHSARYIFDKV-PAKDVVSWNSLI 145
NI++ YA+ G I+ A +F + +K +W+S++
Sbjct: 229 NVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV 288
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y GE+ A ++F M ++VI+W M++GY ++ E ++LF EM+A +KPD +
Sbjct: 289 CGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEV 348
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGL-ASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T+ +VLSACA LG+ + G R++ +NG+ N T A++DMYAKCGSI+ +LE+F +
Sbjct: 349 TLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRR 408
Query: 265 --SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+K F +N+MI GLA HG G A+ + E+ + +K D++TF+G+L AC H+GL++
Sbjct: 409 VGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIE 468
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EG +LF M +G+ ++EHYGCMVDLLGR L+ A +L++ MPFE I ALLSA
Sbjct: 469 EGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSA 528
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C H +++IG+ +A + ++ +N+ A QWEEA + R +M D GI K
Sbjct: 529 CRTHGNVKIGE-IAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKP 587
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
G S IE+ G+ H+F+A H
Sbjct: 588 PGWSYIELGGAIHRFVASDKSH 609
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 176/415 (42%), Gaps = 53/415 (12%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMY---GSLRCIDDAFKVFEKMPEKDIIAWNSMLDA 85
GL +H QTI G ++ + L+ + GS +D + +F ++ ++ WN+M+
Sbjct: 25 GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84
Query: 86 FASCGQMDHAMKLIDLMPLKDVT-----SFNIMISGYARIGKIHSARYIFDKVPA----K 136
++ A+ L M K + +F +++ AR+ + + +
Sbjct: 85 YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 144
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
D+ N+LI Y+ G + A +F + LV++++++NTM+ GY + LF EM+
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIH--VYATDNGLASNPHATTALIDMYAKCGS 254
+ PD T ++ S C+ L G +IH VY + SN +A++DMYAKCG
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264
Query: 255 IEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
I + VF K W++M+ G A G A KL M++ D I++ ++S
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHER----DVISWTAMIS 320
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
S AG E ELF M EA+ +P E
Sbjct: 321 GYSQAGQCSEALELFKEM---------------------------------EALGIKPDE 347
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEA 427
L A+LSAC ++G R+ + + L ++YA CG + A
Sbjct: 348 VTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSA 402
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 98/266 (36%), Gaps = 42/266 (15%)
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGS---IEQSLEVFYKSQVKDVFCWNA 275
S + G +IH NGL + + LI ++ GS ++ S +F + ++F WN
Sbjct: 21 SFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNT 80
Query: 276 MILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK- 333
MI G + A+ L M ++ TF LL++C+ ++ G E+ S + K
Sbjct: 81 MIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKH 140
Query: 334 -----------------------------DFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
D + R L Y M+ + A+ L
Sbjct: 141 GFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLF 200
Query: 365 EAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYA 419
M P E AL S C + + +G ++ V + L+ A ++YA
Sbjct: 201 GEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYA 260
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGS 445
CG A R + + G K+A +
Sbjct: 261 KCGLINIAER---VFSTMGTSKSAAA 283
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/459 (35%), Positives = 260/459 (56%), Gaps = 43/459 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D +FP +L+A + + G+ +H +K G +V+ AL+ M+
Sbjct: 78 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMH---------- 127
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
ASCG + A L D +D +++ MI+G AR G I +
Sbjct: 128 ---------------------ASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGA 166
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD+ P KD+VSWN +I AY G+M A E+F ++ ++V++WN M++GY+R +
Sbjct: 167 ARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSH 226
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD----NGLASNPHA 241
+ ++LF++M+ KPD +T+ S+LSACA+ G L+ G R+H +D NG
Sbjct: 227 LHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV--L 284
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
ALIDMYAKCGS++ + EVF+ + KDV WN+++ GLALHG+ ++ + +M V
Sbjct: 285 GNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKV 344
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
+ D+ITF+ +L ACSH G+V +G E F+ M+ + V ++HYGC+VD+LGRA LL A
Sbjct: 345 RPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAF 404
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
E I+ M EP I LLSAC +H ++E+ + + N S G+ ++ +N+YAS
Sbjct: 405 EFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDES-GDYVLLSNIYASV 463
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G+W + + R +M+D+G+ K A S + +H+ L G
Sbjct: 464 GEWFGSEKMRKLMDDSGVNKEADSERL-----HHRLLFG 497
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 140/335 (41%), Gaps = 45/335 (13%)
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ S A G I A +FD++P D +N+LI + A ++ +ML +
Sbjct: 17 LFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGG 76
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
V+PD LT VL AC +G+ +TG ++H +
Sbjct: 77 ---------------------------GVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVV 109
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G S+ ALI M+A CG++ + +F +D W+AMI G A G AA
Sbjct: 110 KAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARD 169
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L D C D +++ +++A + G + ELF ++ + R + + M+
Sbjct: 170 LF----DECPVKDLVSWNVMITAYAKRGDMALARELFDQVPE-----RDVVSWNVMISGY 220
Query: 352 GRARLLDRAIELIEAMPF---EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
R A+EL E M +P + +LLSAC DL++G R+ + + +
Sbjct: 221 VRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSL--SDMFSRN 278
Query: 409 GELMMFAN----LYASCGQWEEANRWRNMMNDTGI 439
G ++ N +YA CG + A+ M D +
Sbjct: 279 GFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDV 313
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/476 (35%), Positives = 258/476 (54%), Gaps = 42/476 (8%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK--VFEKMPEKDIIAWNSMLDAFA 87
+ +HGQ +K G + + LL Y + ++ A+ VF+ + + + WN+ML A++
Sbjct: 27 MQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYS 86
Query: 88 SCGQMDHAMKLIDLM------------P--LK-------------------------DVT 108
+ + A+ L M P LK +V
Sbjct: 87 NSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVY 146
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ N ++ YA G I SA +F+++P +D+VSWN +I Y G ++ A ++F+ M KN
Sbjct: 147 ATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKN 206
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
VI+W TM+ G++R ++ E + L +M +KPD +T++ LSACA LG+LE G IH
Sbjct: 207 VISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHT 266
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y N + +P L DMY KCG +E++L VF K + K V W A+I GLA+HG G
Sbjct: 267 YIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGRE 326
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL +M + + + ITF +L+ACSHAGL +EG LF M + + +EHYGCMV
Sbjct: 327 ALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMV 386
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DL+GRA LL A E IE+MP +P +I GALL+AC +H+ E+G + K++ + +
Sbjct: 387 DLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILI-ELDPDHS 445
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G + A++YA+ G+W + R R+ + G++ G S I +NG H+F AG H
Sbjct: 446 GRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFFAGDGSH 501
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 142/322 (44%), Gaps = 43/322 (13%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ++Y+FP LLKA LS+ +H IK GF VY +LL++Y I A
Sbjct: 106 VPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAH 165
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI----- 120
+F ++P +DI++WN M+D + G +D A K+ MP K+V S+ MI G+ RI
Sbjct: 166 VLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKE 225
Query: 121 ------------------------------GKIHSARYIFDKVPAK----DVVSWNSLIL 146
G + ++I + D V L
Sbjct: 226 ALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTD 285
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y GEMEKA +F K+ K V W ++ G E +D F +M+ + P+ +T
Sbjct: 286 MYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSIT 345
Query: 207 VTSVLSACANLGSLETGARI--HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T++L+AC++ G E G + + + N S H ++D+ + G ++++ E
Sbjct: 346 FTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEH-YGCMVDLMGRAGLLKEAREFIES 404
Query: 265 SQVK-DVFCWNAMILGLALHGY 285
VK + W A++ LH +
Sbjct: 405 MPVKPNAAIWGALLNACQLHKH 426
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 68/283 (24%)
Query: 89 CGQMDHAMK----LIDLMPLKDVTSFNIMISGYARIGKIHSA--RYIFDKVPAKDVVSWN 142
C M M+ L+ +++ + + ++ YARI ++ A R +FD + + + V WN
Sbjct: 20 CSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWN 79
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+++ AY+N+ + E A ++ +ML N + N+ +L
Sbjct: 80 TMLRAYSNSNDPEAALLLYHQML-HNSVPHNSYTFPFL---------------------- 116
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL----------------- 245
L AC+ L + E +IH + G +AT +L
Sbjct: 117 --------LKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLF 168
Query: 246 --------------IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
ID Y K G+++ + ++F K+V W MI+G G AL
Sbjct: 169 NQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALS 228
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
LL +M + +K D IT LSAC+ G +++G + + +EK+
Sbjct: 229 LLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKN 271
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 169/498 (33%), Positives = 273/498 (54%), Gaps = 43/498 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G++ DN++ P++LK+ G L G +HG +K G YV +L+ MY SL I+
Sbjct: 41 GLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEIT 100
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--------------------- 103
KVF++MP++D+++WN ++ ++ G+ + A+ + M
Sbjct: 101 HKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSA 160
Query: 104 LKD-----------VTSF-------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
LK+ VT F N ++ + + G + AR +FD + K+V W S++
Sbjct: 161 LKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMV 220
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y + G +++A +F++ VK+V+ W M+ GY++ + E ++LF M+ ++PD
Sbjct: 221 FGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNF 280
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ S+L+ CA G+LE G IH Y +N + + TAL+DMYAKCG IE +LEVFY+
Sbjct: 281 VLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEI 340
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ +D W ++I GLA++G AL L EM + V+ D ITF+ +L+AC+H G V EG
Sbjct: 341 KERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGR 400
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG---ALLSA 382
++F M + V K EH C++DLL RA LLD A ELI+ M E E+++ +LLSA
Sbjct: 401 KIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSA 460
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
+ +++I +RVA+ + K + A++YAS +WE+ R M D GI K
Sbjct: 461 ARNYGNVKIAERVAEKL-EKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKF 519
Query: 443 AGSSVIEVNGSYHKFLAG 460
G S IE++G H+F+ G
Sbjct: 520 PGCSSIEIDGVGHEFIVG 537
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 105/201 (52%), Gaps = 3/201 (1%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+++ +N M+ + + +V+ LF E++ + PD T+ VL + L + G ++H
Sbjct: 10 SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVH 69
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
YA GL + + + +L+ MYA G IE + +VF + +DV WN +I +G
Sbjct: 70 GYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFE 129
Query: 288 AALKLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A+ + M+ +S +K D+ T + LSACS ++ G ++ + +F ++ ++ +
Sbjct: 130 DAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGN--A 187
Query: 347 MVDLLGRARLLDRAIELIEAM 367
+VD+ + LD+A + ++M
Sbjct: 188 LVDMFCKCGCLDKARAVFDSM 208
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 37/276 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ DN+ LL + G +HG + V TAL+ MY C
Sbjct: 270 MQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGC 329
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A +VF ++ E+D +W S++ A G A+ L
Sbjct: 330 IETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLY--------------------- 368
Query: 121 GKIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT----- 174
Y + V + D +++ +++ A + G + + ++F M ++ + +
Sbjct: 369 -------YEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSC 421
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ R+ L E +L D+M+ + + S+LSA N G+++ R+ +
Sbjct: 422 LIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERV-AEKLEKV 480
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
S+ A T L +YA E V + ++KD+
Sbjct: 481 EVSDSSAHTLLASVYASANRWEDVTNV--RRKMKDL 514
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/546 (31%), Positives = 284/546 (52%), Gaps = 83/546 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++LGV AD ++FPL+++A ++ S + +HG ++ GF +++V L+ MYG +
Sbjct: 126 MRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGR 185
Query: 61 IDDAFKVFEKMP-----------------------------------EKDIIAWNSMLDA 85
+DDA KVFE+M E +++ W S+L +
Sbjct: 186 MDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSS 245
Query: 86 FASCGQMDHAMKLIDLMPLK-----------------DVTSF------------------ 110
A CGQ M+L M ++ D+ +F
Sbjct: 246 HARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENY 305
Query: 111 ----NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK--- 163
N +I Y + G +++AR +F ++ K++VSWN+LI +Y + G ++A +F +
Sbjct: 306 LFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEK 365
Query: 164 -----MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
M+ NV++W+ ++ G+ E ++LF M+ VK + +T+ SVLS CA L
Sbjct: 366 TDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELA 425
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+L G IH + + + N LI+MY K GS ++ VF K + KD+ WN M+
Sbjct: 426 ALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVA 485
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
G +HG G A++ +M + D +TF+ +LSACSHAGLV EG ELF +M K+F V
Sbjct: 486 GYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVE 545
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
++EHY CMVDLLGRA LL A +++++MP EP + GALL++C +H++ E+ + A
Sbjct: 546 PQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQ 605
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ ++ ++ G M+ +N+YA+ G+WE++ + R G+ KT G S I+V + F
Sbjct: 606 IFNLNSEIA-GSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFS 664
Query: 459 AGGIGH 464
AG H
Sbjct: 665 AGNTQH 670
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 161/359 (44%), Gaps = 50/359 (13%)
Query: 24 SSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK---DIIAWN 80
S S + +H Q I TG ++ ++ +Y + DA +VFE P + +++ WN
Sbjct: 45 SKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWN 104
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG-------------------- 116
S+L A + G + A+++ M V+ +F ++I
Sbjct: 105 SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEM 164
Query: 117 ---------------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
Y +IG++ AR +F+++ + VSWN+++ Y + A EMF
Sbjct: 165 GFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMF 224
Query: 162 KKM----LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
+ M L N++TW ++++ + R ++E ++LF M+ + + VLS +L
Sbjct: 225 RMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDL 284
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
+ + G IH Y G + +LI +Y K G++ + +F + + K++ WNA+I
Sbjct: 285 AAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALI 344
Query: 278 LGLALHGYGYAALKLLGEMNDS----CVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
A G+ A + ++ + V+ + +++ ++ + G +E ELF RM+
Sbjct: 345 SSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQ 403
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/441 (36%), Positives = 261/441 (59%), Gaps = 2/441 (0%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D Y+FP LLK G+ LHG ++ G +YV T+L+ +YG ID A KVF
Sbjct: 126 DRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVF 185
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ M E+++++W +M+ ++S G + A +L DLMP ++V S+N +I GY ++G + SA
Sbjct: 186 DGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEK 245
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
FD++P K+VVS+ ++I Y AG+M A +F+K +++I W+ +++GY ++ E
Sbjct: 246 AFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEA 305
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL-ASNPHATTALID 247
V F EM + NVKPD +TS++ AC+ LG+L+ + YAT + H T ALID
Sbjct: 306 VKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALID 365
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
M AKCG++E+++ +F K +D+ + +++ GL++HG+G A+ L M + DD+
Sbjct: 366 MNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVA 425
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
F +L+ACS AGLV EG F M + + ++HY C+VDLL R+ L A ELI+++
Sbjct: 426 FTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSV 485
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P + GALL AC ++ D E+ + VA + + + G ++ +N+YA+ +W +
Sbjct: 486 PVQSHAGAWGALLGACKLYCDSELAEVVASRLI-EIEPENAGNYVLLSNIYAAADRWLDV 544
Query: 428 NRWRNMMNDTGIVKTAGSSVI 448
+ RN MN+ G+ K G S I
Sbjct: 545 SAVRNQMNERGLRKIPGCSWI 565
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/435 (22%), Positives = 168/435 (38%), Gaps = 101/435 (23%)
Query: 11 YSFPLLLKAAGILSSSCIGL-MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFE 69
YS LLK L + I L +H I+ G ++ T + S+ I + VF+
Sbjct: 30 YSISALLK----LCKTHIDLHQVHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFD 85
Query: 70 KMPEKDIIAWNSMLDAF-----------------------------------ASCGQMDH 94
++ WNS++ + AS G+M
Sbjct: 86 RVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMME 145
Query: 95 AMKL--------IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
M L +D +D+ +++ Y + G I AR +FD + ++VVSW ++I+
Sbjct: 146 GMALHGSILRCGVD----EDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIV 201
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y++ G + +A +F M +NV +WN ++ GY++ FDEM NV
Sbjct: 202 GYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVV----- 256
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ T +ID YAK G + + +F K+
Sbjct: 257 ----------------------------------SFTTMIDGYAKAGDMLSARNLFQKAP 282
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+D+ W+A+I G +G A+K EM+ VK D L+ ACS G +
Sbjct: 283 ERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKW 342
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+ S + R ++D+ + ++RA+ L E MP L+S C +
Sbjct: 343 VDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRD-------LISYCSVM 395
Query: 387 QDLEI---GDRVAKM 398
Q L I GD+ +
Sbjct: 396 QGLSIHGHGDQAVSL 410
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/465 (35%), Positives = 261/465 (56%), Gaps = 10/465 (2%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D ++FP LLK +L +G +LHGQ +K +Y++T LL MY + + A +F
Sbjct: 78 DRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLF 137
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGKIH 124
E+M ++ + W SM+ + + A+ L M D + ++S A + +
Sbjct: 138 ERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLG 197
Query: 125 SARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ + D+ V ++L+ Y G+++ A ++F K+ K+V W+ ++ GY+
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYV 257
Query: 181 RSQLYIEVVDLFDEMKAG-NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E + LF E+ G N++P+ +T+ +V+SACA LG LETG +H Y T +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+LIDM++KCG I+ + +F KD+ WN+M+ G ALHG G AL M +
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTT 377
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
++ D+ITFIG+L+ACSHAGLVQEG +LF +E +GV K EHYGCMVDLL RA LL
Sbjct: 378 DLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAE 437
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A E I MP +P +I G++L AC ++ +LE+G+ A+ + K +DG ++ +N+YA
Sbjct: 438 AREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLL-KLEPTNDGVYILLSNIYA 496
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
W E + R +MN+ GI KT G S + ++ H FLAG H
Sbjct: 497 KRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSH 541
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 167/321 (52%), Gaps = 19/321 (5%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYA 118
A+ VF E D++ WNSML AF + A++ M + D +F ++ G A
Sbjct: 31 AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90
Query: 119 -----RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
++GK+ + + + D+ +L+ Y G+++ A +F++M +N + W
Sbjct: 91 LLLEFKVGKVLHGQ-VVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWT 149
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
+M++GY+++ E + L+ +M+ PD +T+ +++SACA L L G ++H + +
Sbjct: 150 SMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
+ +AL++MYAKCG ++ + +VF K KDV+ W+A+I G + AL+L
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLF 269
Query: 294 GEM-NDSCVKADDITFIGLLSACSHAGLVQEGC---ELFSRMEKDFGVTRKLEHYGCMVD 349
E+ S ++ +++T + ++SAC+ G ++ G + +R +K V+ ++D
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN----NSLID 325
Query: 350 LLGRARLLDRAIELIEAMPFE 370
+ + +D A + ++M ++
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYK 346
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 120/237 (50%), Gaps = 13/237 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G D + L+ A L +G+ LH + + +AL+ MY
Sbjct: 171 MEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGD 230
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-------DLMPLKDVTSFNIM 113
+ A +VF+K+ +KD+ AW++++ + + A++L ++ P +VT +
Sbjct: 231 LKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRP-NEVTILAV- 288
Query: 114 ISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
IS A++G + + R++ D + V NSLI ++ G+++ A +F M K++
Sbjct: 289 ISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDL 348
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
I+WN+MV G+ L E + F M+ +++PD +T VL+AC++ G ++ G ++
Sbjct: 349 ISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKL 405
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 124/298 (41%), Gaps = 37/298 (12%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+V+TWN+M+ ++ S + + + EM ++ NV PD T S+L CA L + G
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNV-PDRFTFPSLLKGCALLLEFKVGKV 100
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H L S+ + T L++MYA CG ++ + +F + ++ W +MI G +
Sbjct: 101 LHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHC 160
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKL--- 341
AL L +M + D++T L+SAC+ + G +L S + E D + L
Sbjct: 161 PNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSA 220
Query: 342 --EHYGCMVDLLGRARLLDR------------------------AIELIEAMP----FEP 371
Y DL ++ D+ A++L + P
Sbjct: 221 LVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRP 280
Query: 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
E + A++SAC DLE G V + S ++++ CG + A R
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKR 338
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 173/546 (31%), Positives = 284/546 (52%), Gaps = 83/546 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++LGV AD ++FPL+++A ++ S + +HG ++ GF +++V L+ MYG +
Sbjct: 126 MRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGR 185
Query: 61 IDDAFKVFEKMP-----------------------------------EKDIIAWNSMLDA 85
+DDA KVFE+M E +++ W S+L +
Sbjct: 186 MDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSS 245
Query: 86 FASCGQMDHAMKLIDLMPLK-----------------DVTSF------------------ 110
A CGQ M+L M ++ D+ +F
Sbjct: 246 HARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENY 305
Query: 111 ----NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK--- 163
N +I Y + G +++AR +F ++ K++VSWN+LI +Y + G ++A +F +
Sbjct: 306 LFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEK 365
Query: 164 -----MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
M+ NV++W+ ++ G+ E ++LF M+ VK + +T+ SVLS CA L
Sbjct: 366 TDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELA 425
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+L G IH + + + N LI+MY K GS ++ VF K + KD+ WN M+
Sbjct: 426 ALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVA 485
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
G +HG G A++ +M + D +TF+ +LSACSHAGLV EG ELF +M K+F V
Sbjct: 486 GYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVE 545
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
++EHY CMVDLLGRA LL A +++++MP EP + GALL++C +H++ E+ + A
Sbjct: 546 PQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQ 605
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ ++ ++ G M+ +N+YA+ G+WE++ + R G+ KT G S I+V + F
Sbjct: 606 IFNLNSEIA-GSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFS 664
Query: 459 AGGIGH 464
AG H
Sbjct: 665 AGNTQH 670
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 161/359 (44%), Gaps = 50/359 (13%)
Query: 24 SSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK---DIIAWN 80
S S + +H Q I TG ++ ++ +Y + DA +VFE P + +++ WN
Sbjct: 45 SKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWN 104
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG-------------------- 116
S+L A + G + A+++ M V+ +F ++I
Sbjct: 105 SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEM 164
Query: 117 ---------------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
Y +IG++ AR +F+++ + VSWN+++ Y + A EMF
Sbjct: 165 GFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMF 224
Query: 162 KKM----LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
+ M L N++TW ++++ + R ++E ++LF M+ + + VLS +L
Sbjct: 225 RMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDL 284
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
+ + G IH Y G + +LI +Y K G++ + +F + + K++ WNA+I
Sbjct: 285 AAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALI 344
Query: 278 LGLALHGYGYAALKLLGEMNDS----CVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
A G+ A + ++ + V+ + +++ ++ + G +E ELF RM+
Sbjct: 345 SSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQ 403
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/393 (38%), Positives = 237/393 (60%), Gaps = 2/393 (0%)
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
++F +M E++++AW SM++ + + A +L DL P +DV +NIM+SGY G +
Sbjct: 34 EIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVE 93
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +F ++P +DV+ WN+++ Y G +E +F++M +N+ +WN ++ GY + L+
Sbjct: 94 ARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLF 153
Query: 186 IEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
EV+ F M +V P+ T+ +VLSACA LG+L+ G +HVYA +GL N + A
Sbjct: 154 FEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNA 213
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMYAKCG IE ++ VF KD+ WN +I GLA+H G AL L +M ++ K D
Sbjct: 214 LMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPD 273
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITFIG+L AC+H GLV++G F M D+ + ++EHYGCMVD+L RA L++A+ +
Sbjct: 274 GITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFV 333
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
MP E I LL AC I++++E+ + +A + + +M +N+Y G+W
Sbjct: 334 RKMPVEADGVIWAGLLGACRIYKNVELAE-LALQRLIELEPKNPANYVMLSNIYGDAGRW 392
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
E+ R + M DTG K G S+IEVN + +F
Sbjct: 393 EDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEF 425
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 121/277 (43%), Gaps = 44/277 (15%)
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
M +A +L D +P ++ +N M GYA + S R IF ++ ++VV+W S+I Y +
Sbjct: 1 MTYARQLFDQIPDPNIALWNSMFRGYA---QSESYREIFCEMFERNVVAWTSMINGYILS 57
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
++ A +F ++V+ WN MV+GY+ +E LF EM D + +VL
Sbjct: 58 ADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMP----NRDVMFWNTVL 113
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
YA G++E +F + +++F
Sbjct: 114 KG-----------------------------------YATNGNVEALEGLFEEMPERNIF 138
Query: 272 CWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
WNA+I G A +G + L M ++S V +D T + +LSAC+ G + G +
Sbjct: 139 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY 198
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
E G+ + ++D+ + +++ AI + M
Sbjct: 199 AESS-GLKGNVYVGNALMDMYAKCGIIENAISVFRGM 234
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 115/269 (42%), Gaps = 24/269 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ E V ++ + +L A L + +G +H +G G+VYV AL+ MY
Sbjct: 164 LSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGI 223
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
I++A VF M KD+I+WN+++ A + A+ L M D +F ++
Sbjct: 224 IENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCA 283
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+G + F D + + + ++ AG +E+A +KM V+ + +
Sbjct: 284 CTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGV 343
Query: 171 TWNTMVTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
W ++ G R +E+ +L E++ N +Y+ ++++ + G E AR+
Sbjct: 344 IWAGLL-GACRIYKNVELAELALQRLIELEPKN-PANYVMLSNIY---GDAGRWEDVARL 398
Query: 227 HVYATDNGLASNP-----HATTALIDMYA 250
V D G P A+++ Y+
Sbjct: 399 KVAMRDTGFKKLPGCSLIEVNDAVVEFYS 427
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 166/478 (34%), Positives = 271/478 (56%), Gaps = 13/478 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ GV D ++FPLLLKA L + + +K G +VQ +L+ +
Sbjct: 95 LRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGY 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
+D + ++F + +KD+++W ++++ G+ A++ M + +VT +++ +
Sbjct: 154 VDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCA 213
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWN-----SLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A + + R++ V W+ +L+ Y+ G + A ++F +M +N++
Sbjct: 214 A-AMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLV 272
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W ++ GY++ Y E + +F EM ++P+ TVTS L+ACA LGSL+ G +H Y
Sbjct: 273 SWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYV 332
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ L N TAL+DMY+KCG ++++L VF K KDV+ W AMI GLA+ G ++L
Sbjct: 333 DRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSL 392
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M S V+ + +TF+G+LSAC+H GLV EG ELF M D+ + ++HYGCMVDL
Sbjct: 393 NLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDL 452
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L+ AI+ IE+MP EPT + GAL S C+IH+ E+G+ + + + S G
Sbjct: 453 LGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHS-GR 511
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNL 468
++ ANLY+ C +WE A R +M G+ K+ G S IEVNG H+F+A H ++
Sbjct: 512 YILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNGVIHEFIAFDKSHTESI 569
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/389 (22%), Positives = 152/389 (39%), Gaps = 78/389 (20%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD--KVPAKD 137
+S+L F CG DH LK TS ++ SG A H ++ D + KD
Sbjct: 9 HSILCCFHKCGTFDH---------LKQTTSI-LITSGLA-----HHTFFLSDILRSATKD 53
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
L YT +F ++ + WNT++ G+ S V+ + ++
Sbjct: 54 --------LGYTLL--------LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRN 97
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V PD T +L A + L + E + + + GL + +L+ +A CG ++
Sbjct: 98 HGVIPDRHTFPLLLKAFSKLRN-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDC 156
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC-- 315
S +F ++ KDV W A+I G +G AL+ EM S V+ D++T + +L A
Sbjct: 157 SRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAM 216
Query: 316 ----------------------------------SHAGLVQEGCELFSRMEKDFGVTRKL 341
S G + ++F+ M TR L
Sbjct: 217 LRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMP-----TRNL 271
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKM 398
+G ++ + A+++ + M EP +S + + L+AC L+ G + +
Sbjct: 272 VSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEY 331
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEA 427
V L+ ++Y+ CG +EA
Sbjct: 332 VDRSKLGLNSKLGTALVDMYSKCGCVDEA 360
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 259/477 (54%), Gaps = 47/477 (9%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDD---AFKVFEKMPEKDIIAWNSMLDAF--- 86
H Q I+ G H ++ L+ D A K+F+ +P+ D +N+++ F
Sbjct: 42 HSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGFLHS 101
Query: 87 -------------------------------ASCGQMDHAMK----LIDLMPLKDVTSFN 111
+C ++ H M+ L N
Sbjct: 102 QLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLN 161
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+I Y + AR +F +P D VSW SLI Y+ G +++A +F+ M KN +
Sbjct: 162 SLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSAS 221
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP-DYLTVTSVLSACANLGSLETGARIHVYA 230
WN M+ Y+++ + E LFD MKA N D T++LSAC LG+L+ G IH Y
Sbjct: 222 WNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYI 281
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYA 288
NG+ + TTA++DMY KCG +E++L+VF+ + + + WN MI GLA+HG G A
Sbjct: 282 KRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEA 341
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A++L EM V DDITF+ LL+AC+H+GLV+EG FS M + +G+ ++EH+GCMV
Sbjct: 342 AIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMV 401
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA-KSNYLS 407
DLLGRA ++ A +LI+ MP P ++LG LL AC H+++E+G+ + + V + N +
Sbjct: 402 DLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPN--N 459
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ ANLYA+ G+WE+A + R +M+D G+ K G S+IE+ G+ H+F+AG H
Sbjct: 460 SGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNH 516
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 51/259 (19%)
Query: 20 AGILSSSCIGL-------MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
A + S+C GL +H + G + TA++ MY C++ A +VF +P
Sbjct: 258 ATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLP 317
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
+P + ++S+N MI G A G +A +F +
Sbjct: 318 -----------------------------LPCRWISSWNCMIGGLAMHGNGEAAIQLFKE 348
Query: 133 VP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV-----KNVITWNTMVTGYLRSQ 183
+ A D +++ +L+ A ++G +E+ F M+ + + MV R+
Sbjct: 349 MERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAG 408
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
+ E L DEM V PD + ++L AC ++E G I + L N
Sbjct: 409 MVPEARKLIDEMP---VSPDVTVLGTLLGACKKHRNIELGEEIGRRVIE--LEPNNSGRY 463
Query: 244 ALI-DMYAKCGSIEQSLEV 261
L+ ++YA G E + +V
Sbjct: 464 VLLANLYANAGKWEDAAKV 482
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 167/472 (35%), Positives = 267/472 (56%), Gaps = 11/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV + Y+FP +L A + + C G +HG +K+GF +VYVQ+AL+ MY
Sbjct: 256 MHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGD 315
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV--------TSFNI 112
+ +A + E M + D+++WNS++ F G + A++L M +++ + N
Sbjct: 316 LKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNC 375
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ G +H I +VS N+L+ Y G+M+ A +F+KML K+VI+W
Sbjct: 376 CVVGSINPKSVHGL-IIKTGFENYKLVS-NALVDMYAKTGDMDCAYTVFEKMLEKDVISW 433
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++VTGY ++ + E + +F +M+ V PD V S+LSACA L LE G ++H+
Sbjct: 434 TSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIK 493
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+GL + +L+ MYAKCG ++ + +F QVKDV W A+I+G A +G G +LK
Sbjct: 494 SGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKF 553
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M S + D ITFIGLL ACSHAGLV EG + F +M K +G+ EHY CM+DL G
Sbjct: 554 YDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFG 613
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R+ LD A +L++ M +P ++ +LLSAC +H++LE+ +R A + + ++ +
Sbjct: 614 RSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNL-FELEPMNAMPYV 672
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M +N+Y++ +W + + R +M GIVK G S +E+N + F++ GH
Sbjct: 673 MLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGH 724
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 180/379 (47%), Gaps = 17/379 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G A ++ +L+ L G M+HG +K GF G+V+V T L+ MY +C
Sbjct: 153 MRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKC 212
Query: 61 IDDAFKVFE--KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMI 114
+ +A +F+ + K+ + W +M+ +A G A++ M + V +F ++
Sbjct: 213 VSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTIL 272
Query: 115 SGYARI------GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ + + ++H +I +V ++L+ Y G+++ A M + M +
Sbjct: 273 TACSSVLARCFGEQVHG--FIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDD 330
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V++WN+++ G++R L E + LF M N+K D T SVL+ C +GS+ + +H
Sbjct: 331 VVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSINPKS-VHG 388
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
G + + AL+DMYAK G ++ + VF K KDV W +++ G A +
Sbjct: 389 LIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEE 448
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
+LK+ +M + V D +LSAC+ L++ G ++ K G+ Y +V
Sbjct: 449 SLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS-GLRWSQSVYNSLV 507
Query: 349 DLLGRARLLDRAIELIEAM 367
+ + LD A + +M
Sbjct: 508 AMYAKCGCLDDADAIFVSM 526
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 120/209 (57%), Gaps = 4/209 (1%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +++ ++ G+++ AR +FDK+P KD SWN++I +Y N G + +A E+F K+ I
Sbjct: 69 NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TW+++++GY + +E DLF M+ K T+ SVL C++LG ++TG IH +
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFV 188
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS---QVKDVFCWNAMILGLALHGYGY 287
NG N T L+DMYAKC + ++ E +K K+ W AM+ G A +G GY
Sbjct: 189 VKNGFEGNVFVVTGLVDMYAKCKCVSEA-EFLFKGLEFDRKNHVLWTAMVTGYAQNGDGY 247
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACS 316
A++ M+ V+ + TF +L+ACS
Sbjct: 248 KAVEFFRYMHAQGVECNQYTFPTILTACS 276
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 49/316 (15%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
+Y LL ++DA K+F+KMP+KD +WN+M+ ++ + G++ A +L D
Sbjct: 65 IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124
Query: 105 KDVTSFNIMISGYARIG-KIHSARYIFDKVPAKDVVSWNSL------ILAYTNAGEMEKA 157
K +++ +ISGY + G K+ + FD + + W + +L ++ + +
Sbjct: 125 KSSITWSSIISGYCKFGCKVEA----FDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQT 180
Query: 158 GEMFKKMLVKN-------VIT-------------------------------WNTMVTGY 179
GEM +VKN V+T W MVTGY
Sbjct: 181 GEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGY 240
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ + V+ F M A V+ + T ++L+AC+++ + G ++H + +G SN
Sbjct: 241 AQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNV 300
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ +AL+DMYAKCG ++ + + + DV WN++++G HG AL+L M+
Sbjct: 301 YVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGR 360
Query: 300 CVKADDITFIGLLSAC 315
+K DD TF +L+ C
Sbjct: 361 NMKIDDYTFPSVLNCC 376
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 158/413 (38%), Positives = 245/413 (59%), Gaps = 3/413 (0%)
Query: 54 MYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM 113
++G+L + A KVF +M EK+++ W SM++ + + A + DL P +D+ +N M
Sbjct: 34 LFGTLCSMVSANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTM 93
Query: 114 ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
++GY +G + AR +FD++P +DV+SWN+++ Y N G+ME +F +ML +NV +WN
Sbjct: 94 VAGYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWN 153
Query: 174 TMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++ GY ++ EV+ F M G+V P+ T+T VLSACA LG+ + G R+H Y +
Sbjct: 154 GLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGEN 213
Query: 233 NGLAS-NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G + + ALIDMY KCG+IE ++EVF + +D+ WN MI GLA HG+G AL
Sbjct: 214 LGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALD 273
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L EM + + D +TF+G+L AC H GLV++G F+ M DF +T ++EH GC+VDLL
Sbjct: 274 LFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLL 333
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
RA L +A+E I MP + I LL A +++ ++ G+ K + K +
Sbjct: 334 SRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELI-KLEPRNPANF 392
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+M +N+Y G++++A R + M DTG K AG S IE + KF + G H
Sbjct: 393 VMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGISWIETDDGLVKFYSSGEKH 445
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 23/255 (9%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----K 97
C V +L+ Y ++ ++ +VF++M E+++ +WN ++ +A G++ + +
Sbjct: 115 CRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKR 174
Query: 98 LID---LMPLKDVTSFNIMISGYARIGKIHSARYI--------FDKVPAKDVVSWNSLIL 146
++D + P D T +++S A++G + + ++KV DV N+LI
Sbjct: 175 MVDEGSVFP-NDAT-LTLVLSACAKLGAFDFGKRVHKYGENLGYNKV---DVNVKNALID 229
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G +E A E+FK + +++I+WNTM+ G E +DLF EMK + PD +T
Sbjct: 230 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVT 289
Query: 207 VTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
VL AC ++G +E G A + TD + ++D+ ++ G + Q++E K
Sbjct: 290 FVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKM 349
Query: 266 QVK-DVFCWNAMILG 279
VK D W A +LG
Sbjct: 350 PVKADAVIW-ATLLG 363
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLR 59
+ E V ++ + L+L A L + G +H G+ V V+ AL+ MYG
Sbjct: 176 VDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCG 235
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ------MDHAMKLIDLMPLKDVTSFNIM 113
I+ A +VF+ + +D+I+WN+M++ A+ G + H MK + P D +F +
Sbjct: 236 AIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISP--DKVTFVGV 293
Query: 114 ISGYARIGKIHSARYIFDKV-----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK- 167
+ +G + F+ + + ++ + AG + +A E KM VK
Sbjct: 294 LCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKA 353
Query: 168 NVITWNTMVTGYLRSQLYIEV----VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
+ + W T++ S++Y +V + L + +K P + S + A G +
Sbjct: 354 DAVIWATLLGA---SKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDA--GRFDDA 408
Query: 224 ARIHVYATDNGL 235
AR+ V D G
Sbjct: 409 ARLKVAMRDTGF 420
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 167/497 (33%), Positives = 269/497 (54%), Gaps = 35/497 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV ++ +LKAA G +H K GF + T L+ +Y +DDA
Sbjct: 99 GVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDDA 158
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF-------------- 110
+VF+++ KD +N+M+ A+ G+++ A +L ++MP ++ +
Sbjct: 159 RRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMD 218
Query: 111 ------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI-LAYTNA 151
MISG+A+ G + AR +FD + +DV +WN +I + Y
Sbjct: 219 SAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKC 278
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G +E A ++F M +NV+ W +M++GY + + + V LF +M+ VK D T+ +V+
Sbjct: 279 GLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVV 338
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
S+C +G+L+ G +H Y +GL +LIDMY+KCG I+++ E+F +D F
Sbjct: 339 SSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDF 398
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSC-VKADDITFIGLLSACSHAGLVQEGCELFSR 330
W MI+G A++G AL L +M + V ++ITF+G+L++CSH GLV++G F R
Sbjct: 399 SWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHR 458
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390
M K +G+ ++EHYGCMVDLLGRA+LL A + IE MP P +I +LL AC ++
Sbjct: 459 MSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVG 518
Query: 391 IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
+ + VA+ V G +++ +N+YA+ +W + N+ R M + + K G SVIEV
Sbjct: 519 LAEYVAERVEELEPSRCGGNVLL-SNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEV 577
Query: 451 NGSYHKFLAGGIGHLSN 467
NG H+FL+G HL
Sbjct: 578 NGCAHEFLSGDETHLET 594
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 51/227 (22%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV AD+ + ++ + G + + +G +H G + V+ +L+ MY
Sbjct: 322 MQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGD 381
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-------DLMPLKDVTSFNIM 113
I A ++F + ++D +W M+ FA G A+ L ++MP ++T ++
Sbjct: 382 IKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMP-NEITFLGVL 440
Query: 114 IS---------GY---ARIGKIH-----------------------SARYIFDKVP-AKD 137
S GY R+ K++ A +++P A D
Sbjct: 441 TSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPD 500
Query: 138 VVSWNSLILAYTNAGEM-------EKAGEMFKKMLVKNVITWNTMVT 177
V W SL+ A GE+ E+ E+ NV+ N T
Sbjct: 501 VAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNVYAT 547
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 154/419 (36%), Positives = 250/419 (59%), Gaps = 8/419 (1%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V A++ YG + A +F+KM ++ ++W M+D FA G M A + + +P
Sbjct: 22 NVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAARRTFNEVP 81
Query: 104 --LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
LK+V ++ +MI GYA G++ +AR +F+ +P ++ W+S+I Y G +++A +F
Sbjct: 82 FELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIF 141
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
++ V+N++ WN+++ GY ++ E +D F +M+ +PD +TV VLSACA L L+
Sbjct: 142 DRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLD 201
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G +H G+ N AL+DMYAKCG + + +F + K+ CWN+MI G A
Sbjct: 202 VGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFA 261
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+HG AL+ G M +S K D+ITF+ +LSAC H G V+ G E+FS+ME+ +G++ +
Sbjct: 262 VHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMER-YGLSASI 320
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401
+HYGC+VDLLGRA + A LI++MP +P +++ GA L AC IH D ++ ++V + VC
Sbjct: 321 KHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDNDMVEQVVEDVCT 380
Query: 402 KSNYLSDGELMMFA---NLYASCGQWEEANRWRNMMNDTGIVKTAGSS--VIEVNGSYH 455
+ + G +A N+YA G WE+A R +M D G+ KT+G S ++E +H
Sbjct: 381 SDSSVDSGNDPHYALLLNIYAGSGSWEKAGRVSMVMADRGLQKTSGRSSLMLENTEQFH 439
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 107/264 (40%), Gaps = 22/264 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D + +L A LS +G +H G + +V AL+ MY
Sbjct: 175 MQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGD 234
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+ A +FE+M K+ WNSM+ FA G+ A++ M D +F ++S
Sbjct: 235 LTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSA 294
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVIT 171
G + IF K+ + + + L+ AG ++ A + K M +K N
Sbjct: 295 CVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTV 354
Query: 172 WNTMVTGYLRSQLYIEVVDLFDE--------MKAGNVKPDYLTVTSVLSACANLGSLETG 223
W + G R + ++V+ E + +GN P Y + ++ A GS E
Sbjct: 355 WGAFL-GACRIHMDNDMVEQVVEDVCTSDSSVDSGN-DPHYALLLNIY---AGSGSWEKA 409
Query: 224 ARIHVYATDNGLASNPHATTALID 247
R+ + D GL ++ +++
Sbjct: 410 GRVSMVMADRGLQKTSGRSSLMLE 433
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 260/476 (54%), Gaps = 39/476 (8%)
Query: 13 FPLLLKAAGILSSSCIGL--MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
P+LLKAA S + +GL LH + +K+ F + V T ++ MY + DA + F++
Sbjct: 57 LPVLLKAAAASSPAELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE 116
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--------------------------- 103
MP++++I++N++L +A G MD A+ L M
Sbjct: 117 MPDRNVISYNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWF 176
Query: 104 ------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
++ V ++ +++ GY G + +AR +FD++PA++ W+S++ Y AG+ E+A
Sbjct: 177 EATPPGMRTVVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEA 236
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
+F ++ +N++ WN ++ GY + + ++ F M VKPD T+ S+LSACA L
Sbjct: 237 RAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQL 296
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
GSLE G ++H + + N LIDMYAKCG + + +F + K+ CWN MI
Sbjct: 297 GSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMI 356
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
LA HG AL L +M S K + IT + +L AC+H G V EG ++F++++ +GV
Sbjct: 357 SALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDA-YGV 415
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK 397
+EHYGC+VDLLGRA L A E++ M EP E I G+LL AC +H+D E+ V +
Sbjct: 416 EAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTE 475
Query: 398 MVCAKSNYLS---DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
+ ++ + D E +M AN+ A+ +WE+A + R M G+ KT G S +E+
Sbjct: 476 EILRLHSFHASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531
>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Cucumis sativus]
gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Cucumis sativus]
Length = 580
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 173/488 (35%), Positives = 266/488 (54%), Gaps = 37/488 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ LG+H ++ L+A G + G +H Q K GFC VYVQTAL+ Y L
Sbjct: 95 MQRLGLHPSTFAVSSTLRACGRIMCKFRGWCIHAQVYKLGFCRCVYVQTALVDFYSKLGD 154
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A KVF++M EK++++WNS+L + G + A KL D MP+KD S+N M++G++
Sbjct: 155 MGFAQKVFDEMTEKNVVSWNSILSGYVKIGNLVDAQKLFDEMPVKDAISWNSMLTGFSNS 214
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A +F ++ K SWN++I Y N G+M+ A +F M +N +T T++ GY
Sbjct: 215 GNMDRACCLFQQMGEKSSASWNAMIGGYVNCGDMKAARNLFDVMPNRNNVTRITLIAGYS 274
Query: 181 RSQLYIEVVDLFDEMKAG-----------------------------------NVKPDYL 205
+ +LFD+M+ N++PD +
Sbjct: 275 KLGEVNSAYELFDKMEESEKELLSFNAMIACYSQNSMPNKALELFNLMLQPHVNIQPDEM 334
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T SV+SAC LG+L G I Y G+ + H TAL+D+YAK G+I ++ E+F
Sbjct: 335 TFASVISACTQLGNLSYGTWIESYMEKLGIELDDHLATALVDLYAKSGNINRAFELFNGL 394
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ +D+ ++AMI G ++ + A++L EM + + +T+ GLL+A +HAGLV EG
Sbjct: 395 KKRDLVAYSAMIFGCGINSKAHEAIRLFKEMLRVNICPNLVTYAGLLTAYNHAGLVDEGY 454
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
FS M KD G+ +HYG MVDLLGRA L+ A ELI +MP +P + GALL AC +
Sbjct: 455 LCFSSM-KDHGLAPLADHYGIMVDLLGRAGRLEEAYELIHSMPVQPNAGVWGALLHACKL 513
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H ++E+G+ +A C+K + G + AN+Y+S +W++A R R M + K +G
Sbjct: 514 HNNVELGE-IAARNCSKLVTDTTGYRSLLANIYSSMERWDDAKRMRKAMGNKIFAKISGC 572
Query: 446 SVIEVNGS 453
S +E + S
Sbjct: 573 SWMEQSES 580
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+ TW V + ++ ++E + + +M+ + P V+S L AC + G IH
Sbjct: 68 DAFTWACAVRFFSQNGQFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKFRGWCIH 127
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
G + TAL+D Y+K G + + +VF + K+V WN+++ G G
Sbjct: 128 AQVYKLGFCRCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKIGNLV 187
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
A KL EM VK D I++ +L+ S++G + C LF +M
Sbjct: 188 DAQKLFDEMP---VK-DAISWNSMLTGFSNSGNMDRACCLFQQM 227
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 165/478 (34%), Positives = 271/478 (56%), Gaps = 13/478 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ GV D ++FPLLLKA L + + +K G +VQ +L+ +
Sbjct: 95 LRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGY 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
+D + ++F + +KD+++W ++++ G+ A++ M + +VT +++ +
Sbjct: 154 VDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCA 213
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWN-----SLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A + + R++ V W+ +L+ Y+ G + A ++F +M +N++
Sbjct: 214 A-AMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLV 272
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W ++ GY++ Y E + +F EM ++P+ TVTS L+ACA LGSL+ G +H Y
Sbjct: 273 SWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYV 332
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ L N TAL+DMY+KCG ++++L VF K KDV+ W AMI GLA+ G ++L
Sbjct: 333 DRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSL 392
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M S V+ + +TF+G+LSAC+H GLV EG ELF M D+ + ++HYGCMVDL
Sbjct: 393 NLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDL 452
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L+ AI+ IE+MP EPT + GAL S C+IH+ E+G+ + + + S G
Sbjct: 453 LGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHS-GR 511
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNL 468
++ ANLY+ C +WE A R +M G+ K+ S IEVNG H+F+A H+ ++
Sbjct: 512 YILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVIHEFIAFDKSHIESI 569
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 150/389 (38%), Gaps = 78/389 (20%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD--KVPAKD 137
+S+L F CG DH L TS ++ SG A H ++ D + KD
Sbjct: 9 HSILCCFHKCGTFDH---------LNQTTSI-LITSGLA-----HHTFFLSDLLRSATKD 53
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
L YT +F ++ + WNT+V + S V+ + ++
Sbjct: 54 --------LGYTLL--------LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRN 97
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V PD T +L A + L + E + + + GL + +L+ +A CG ++
Sbjct: 98 HGVIPDRHTFPLLLKAFSKLRN-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDC 156
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC-- 315
S +F ++ KDV W A+I G +G AL+ EM S V+ D++T + +L A
Sbjct: 157 SRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAM 216
Query: 316 ----------------------------------SHAGLVQEGCELFSRMEKDFGVTRKL 341
S G + ++F+ M TR L
Sbjct: 217 LRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMP-----TRNL 271
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKM 398
+G ++ + A+++ + M EP +S + + L+AC L+ G + +
Sbjct: 272 VSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEY 331
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEA 427
V L+ ++Y+ CG +EA
Sbjct: 332 VDRSKLGLNSKLGTALVDMYSKCGCVDEA 360
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 228/361 (63%), Gaps = 3/361 (0%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
DV + ++ YA++G + AR +FD++ +D+ +WNSLI Y+ +G+ME A E+FK M
Sbjct: 44 DVYALTALVDMYAKLGVLMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMP 103
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGA 224
++V++W TM++GY ++ +Y + +++F +M K V+P+ +T+ SV SACA LG+LE G
Sbjct: 104 SRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGE 163
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC-WNAMILGLALH 283
RI YA DNGL N + + L++MYA+CG I+ + VF + + C WN+M++GLA+H
Sbjct: 164 RIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVH 223
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G AL+L +M ++ DD+TF+GL+ AC+H GLV +G +LF ME +F + KLEH
Sbjct: 224 GRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEH 283
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
YGCMVDLLGRA L A +L+++MP +P I G LL AC H ++E + A+ +
Sbjct: 284 YGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVE 343
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIG 463
+ + G ++ N+YAS +W+ + R +M I K AG SVIE G HKF+
Sbjct: 344 PW-NPGNYVILCNIYASAQRWDGVAKLRKLMKGGQITKAAGYSVIEGEGEIHKFIVEDKS 402
Query: 464 H 464
H
Sbjct: 403 H 403
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 143/322 (44%), Gaps = 43/322 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + +F L A S G ++H IK+GF VY TAL+ MY L + A
Sbjct: 5 GCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLA 64
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+VF++M +DI WNS++ ++ G M+ A++L LMP + V S+ MISGY++ G
Sbjct: 65 RQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYT 124
Query: 125 SARYIFDKVPA----------------------------------------KDVVSWNSL 144
A +F K+ K++ N+L
Sbjct: 125 KALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTL 184
Query: 145 ILAYTNAGEMEKAGEMFKKM-LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+ Y G+++ A +F ++ +N+ +WN+M+ G E + L+D+M ++PD
Sbjct: 185 LEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPD 244
Query: 204 YLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T ++ AC + G + G ++ T+ + ++D+ + G ++++ ++
Sbjct: 245 DVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLV 304
Query: 263 YKSQVK-DVFCWNAMILGLALH 283
+K D W ++ + H
Sbjct: 305 KSMPMKPDSVIWGTLLGACSFH 326
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 166/509 (32%), Positives = 267/509 (52%), Gaps = 47/509 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ + +F LL + + G +H + G + V AL+ MY
Sbjct: 249 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNS 308
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCG-----QMDHAMKLIDLMP------------ 103
+ +A ++F++M ++D+I+W++M+ +A G +D +L++ M
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368
Query: 104 --LKDVTSFNIMISG-------------------------YARIGKIHSARYIFDKVPAK 136
L+ T+ + G YA+ G I+ A +F K+ K
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK 428
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
+VV+W S + Y G++ A ++F +M +NV++WN M+ GY ++ ++V +L MK
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK 488
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
A +PD +TV ++L AC L LE G +H A GL S+ T+LI MY+KCG +
Sbjct: 489 AEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVA 548
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
++ VF K +D WNAM+ G HG G A+ L M V ++IT ++SACS
Sbjct: 549 EARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACS 608
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
AGLVQEG E+F M++DF +T + +HYGCMVDLLGRA L A E I++MP EP S+
Sbjct: 609 RAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVW 668
Query: 377 GALLSACVIHQDLEIGDRVAKMVCA-KSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
ALL AC H ++++ +R A + + +Y S + +N+YA G+W+++ + R +M+
Sbjct: 669 HALLGACKSHNNVQLAERAAHHILELEPSYAS--VYITLSNIYAQAGRWDDSTKVRRVMD 726
Query: 436 DTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
D G+ K G S IE++G H F+A H
Sbjct: 727 DRGLKKDRGESSIEIDGRIHTFVAEDCAH 755
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 162/328 (49%), Gaps = 14/328 (4%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G M+H Q + G +Y+ +L+ Y + A +VF +M +D++ W+SM+ A+A
Sbjct: 75 GKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAG 134
Query: 89 CGQMDHAMKLIDLMPLKDVT----SFNIMISGYARIGKIHSARYIFDKVPA----KDVVS 140
A + M ++ +F ++ + R I V A DV
Sbjct: 135 NNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAV 194
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+LI Y+ GE+ A E+F KM +NV++W ++ + + E +L+++M +
Sbjct: 195 ATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGI 254
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T S+L++C +L G RIH + ++ GL ++ ALI MY KC S++++ E
Sbjct: 255 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEARE 314
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYA-----ALKLLGEMNDSCVKADDITFIGLLSAC 315
+F + +DV W+AMI G A GY +LL M V + +TF+ +L AC
Sbjct: 315 IFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRAC 374
Query: 316 SHAGLVQEGCELFSRMEK-DFGVTRKLE 342
+ G +++G ++ + + K F + R L+
Sbjct: 375 TAHGALEQGRQIHAELSKVGFELDRSLQ 402
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 157/347 (45%), Gaps = 48/347 (13%)
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
D+ NSLI Y+ ++ A ++F++M +++V+TW++M+ Y + + D F+ M
Sbjct: 90 DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
N++P+ +T S+L AC N LE G +IH G+ ++ TALI MY+KCG I
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC- 315
+ EVF+K ++V W A+I A H A +L +M + + + +TF+ LL++C
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCN 269
Query: 316 ---------------SHAGL-------------------VQEGCELFSRMEKDFGVTRKL 341
S GL VQE E+F RM K R +
Sbjct: 270 TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSK-----RDV 324
Query: 342 EHYGCMVDLLGRA-----RLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGD 393
+ M+ ++ +D +L+E M E P + ++L AC H LE G
Sbjct: 325 ISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGR 384
Query: 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
++ + L N+YA CG EA + + M + +V
Sbjct: 385 QIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVV 431
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 168/370 (45%), Gaps = 48/370 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + + + +F +LKA S G +H G V V TAL+ MY
Sbjct: 148 MTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGE 207
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
I A +VF KM E+++++W +++ A A +++ A +L + M VT +++ S
Sbjct: 208 ISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS 267
Query: 116 -----GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
R +IHS +I ++ D++ N+LI Y +++A E+F +M ++VI
Sbjct: 268 CNTPEALNRGRRIHS--HISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVI 325
Query: 171 TWNTMVTGYLRS-----QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+W+ M+ GY +S + EV L + M+ V P+ +T S+L AC G+LE G +
Sbjct: 326 SWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQ 385
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK--------------------- 264
IH + G + TA+ +MYAKCGSI ++ +VF K
Sbjct: 386 IHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGD 445
Query: 265 ----------SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
++V WN MI G A +G +LL M + D +T I +L A
Sbjct: 446 LSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEA 505
Query: 315 CSHAGLVQEG 324
C ++ G
Sbjct: 506 CGALAGLERG 515
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 125/311 (40%), Gaps = 56/311 (18%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W G LR E + L +K + + T V+ CA E G +H
Sbjct: 29 WRLCKAGRLR-----EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLD 83
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ G+ + + +LI+ Y+K + + +VF + ++DV W++MI A + + A
Sbjct: 84 ELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFD 143
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEG--------------------------- 324
M D+ ++ + ITF+ +L AC++ ++++G
Sbjct: 144 TFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYS 203
Query: 325 --------CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTE 373
CE+F +M + R + + ++ + R L+ A EL E M P
Sbjct: 204 KCGEISVACEVFHKMTE-----RNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNA 258
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN----LYASCGQWEEANR 429
+LL++C + L G R+ + ++ +D M+ AN +Y C +EA
Sbjct: 259 VTFVSLLNSCNTPEALNRGRRIHSHI-SERGLETD---MIVANALITMYCKCNSVQEARE 314
Query: 430 WRNMMNDTGIV 440
+ M+ ++
Sbjct: 315 IFDRMSKRDVI 325
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 260/476 (54%), Gaps = 39/476 (8%)
Query: 13 FPLLLKAAGILSSSCIGL--MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
P+LLKAA S + +GL LH + +K+ F + V T ++ MY + DA + F++
Sbjct: 57 LPVLLKAAAASSPTELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE 116
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--------------------------- 103
MP++++I++N++L +A G MD A+ L M
Sbjct: 117 MPDRNVISYNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWF 176
Query: 104 ------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
++ V ++ +++ GY G + +AR +FD++PA++ W+S++ Y AG+ E+A
Sbjct: 177 EATPPGMRTVVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEA 236
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
+F ++ +N++ WN ++ GY + + ++ F M VKPD T+ S+LSACA L
Sbjct: 237 RAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQL 296
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
GSLE G ++H + + N LIDMYAKCG + + +F + K+ CWN MI
Sbjct: 297 GSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMI 356
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
LA HG AL L +M S K + IT + +L AC+H G V EG ++F++++ +GV
Sbjct: 357 SALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDA-YGV 415
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK 397
+EHYGC+VDLLGRA L A E++ M EP E I G+LL AC +H+D E+ V +
Sbjct: 416 GAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTE 475
Query: 398 MVCAKSNYLS---DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
+ ++ + D E +M AN+ A+ +WE+A + R M G+ KT G S +E+
Sbjct: 476 EILRLHSFHASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 160/439 (36%), Positives = 251/439 (57%), Gaps = 33/439 (7%)
Query: 28 IGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF 86
+G LH + +++GF ++V+TAL++MY A
Sbjct: 65 LGASLHARALRSGFAAADLFVRTALVEMY-----------------------------AK 95
Query: 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
+ G++ A D P +DV N+M++ Y G++ AR +FD + +D+VSWN++I
Sbjct: 96 TAAGEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIH 155
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G++ A E+F ++ +W++M++ Y + + E ++L+ EM+ V PD ++
Sbjct: 156 GYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCIS 215
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ SVLSAC+ +G+L GA +H + N + + TAL+DMYAKCG IE SL+VF+
Sbjct: 216 MVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMP 275
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
VKDV W++MI+GLA HG G+ AL L EM ++ ++ITFIG+L AC+H GLV +G +
Sbjct: 276 VKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKK 335
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
FS M GV ++EHYGCMVDLLGRA ++ A+ELI +M F+P I LL AC IH
Sbjct: 336 YFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIH 395
Query: 387 QDLEIGDR-VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
+++EI + +AK+ + L+DG ++ +N+YA WE R + I + G
Sbjct: 396 KNVEIAEEAMAKLKVL--DPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGR 453
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IE + H+F++G H
Sbjct: 454 SSIEWENTVHEFVSGDRSH 472
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 19/204 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D S +L A + + IG +H + + TAL+ MY
Sbjct: 204 MRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGD 263
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID------LMPLKDVTSFNIMI 114
I+++ KVF MP KD++ W+SM+ A+ G A+ L L P ++T ++I
Sbjct: 264 IENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQP-NEITFIGVLI 322
Query: 115 SGYARIGKIHSARYIFDK-------VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
+ +G ++ + F VP + + ++ AG +E+A E+ + M K
Sbjct: 323 A-CTHVGLVNDGKKYFSSMSDVHGVVPRME--HYGCMVDLLGRAGHVEEAMELIRSMTFK 379
Query: 168 -NVITWNTMVTGYLRSQLYIEVVD 190
+ I W T++ G R +E+ +
Sbjct: 380 PDPIIWRTLL-GACRIHKNVEIAE 402
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 251/452 (55%), Gaps = 42/452 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V A++ Y +D+A K+F+KMP KD ++W ++++ + G++D A ++ + MP
Sbjct: 265 NVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMP 324
Query: 104 LKDVTS-------------------------------FNIMISGYARIGKIHSARYIFDK 132
KD+T+ +N MI+GY+R G++ A +F +
Sbjct: 325 CKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQ 384
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P K+ VSWN++I Y AG+M++A E+F+ M KN+++WN+++ G+L++ LY++ +
Sbjct: 385 MPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSL 444
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
M KPD T LSACANL +L+ G ++H Y +G ++ ALI MYAKC
Sbjct: 445 VMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKC 504
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G ++ + +VF + D+ WN++I G AL+GY A K +M+ V D++TFIG+L
Sbjct: 505 GRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGML 564
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
SACSHAGL +G ++F M +DF + EHY C+VDLLGR L+ A + M +
Sbjct: 565 SACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKAN 624
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCA-----KSNYLSDGELMMFANLYASCGQWEEA 427
+ G+LL AC +H++LE+G A+ + SNY++ +N++A G+WEE
Sbjct: 625 AGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYIT------LSNMHAEAGRWEEV 678
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
R R +M K G S IEV FL+
Sbjct: 679 ERVRMLMRGKRAGKQPGCSWIEVQNQIQHFLS 710
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 203/388 (52%), Gaps = 28/388 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y +DA KVFE+MP KD++++NSML + G+M A++ + M ++V
Sbjct: 146 NAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVV 205
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N+M++GY + G + SA +F+K+P + VSW +++ G+M +A E+F +M KN
Sbjct: 206 SWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKN 265
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V++WN M+ Y++ E V LF +M D ++ T++++ +G L+ +++
Sbjct: 266 VVSWNAMIATYVQDLQVDEAVKLFKKMP----HKDSVSWTTIINGYIRVGKLDEARQVY- 320
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ + A TAL+ + G I+++ ++F + DV CWN+MI G + G
Sbjct: 321 ---NQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDE 377
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL L +M +K + +++ ++S + AG + E+F M + + + + ++
Sbjct: 378 ALNLFRQM---PIK-NSVSWNTMISGYAQAGQMDRATEIFQAMRE-----KNIVSWNSLI 428
Query: 349 DLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
+ L A++ + M E P +S LSAC L++G+++ + + KS Y
Sbjct: 429 AGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYIL-KSGY 487
Query: 406 LSDGELMMFAN----LYASCGQWEEANR 429
++D + N +YA CG+ + A +
Sbjct: 488 MND---LFVGNALIAMYAKCGRVQSAEQ 512
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 150/326 (46%), Gaps = 18/326 (5%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
H + + G L +++A ++F M K+++ +NSM+ A ++ A +L D M
Sbjct: 16 HAFNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMS 75
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
L+++ S+N MI+GY + A +FD +P +D SW +I YT G++EKA E+ +
Sbjct: 76 LRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLEL 135
Query: 164 MLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+ K + WN M+ GY + + + +F++M A D ++ S+L+ G +
Sbjct: 136 VPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPA----KDLVSYNSMLAGYTQNGKMHL 191
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
+ T+ + S ++ Y K G + + ++F K + W M+ GLA
Sbjct: 192 ALQFFESMTERNVVS----WNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAK 247
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
+G A +L M V +++ +++ V E +LF +M V+
Sbjct: 248 YGKMAEARELFDRMPSKNV----VSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVS---- 299
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMP 368
+ +++ R LD A ++ MP
Sbjct: 300 -WTTIINGYIRVGKLDEARQVYNQMP 324
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 131/297 (44%), Gaps = 39/297 (13%)
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K + N I ++GK+ A IF + K++V++NS+I + A ++F +M
Sbjct: 15 KHAFNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQM 74
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
++N+++WNTM+ GYL + + E +LFD M + D + +++ G LE
Sbjct: 75 SLRNLVSWNTMIAGYLHNNMVEEASELFDVMP----ERDNFSWALMITCYTRKGKLEKAR 130
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+ D + A+I YAK G + +VF + KD+ +N+M+ G +G
Sbjct: 131 ELLELVPDK---LDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNG 187
Query: 285 YGYAALKLLGEMNDSC-----------VKADD----------------ITFIGLLSACSH 317
+ AL+ M + VK+ D ++++ +L +
Sbjct: 188 KMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAK 247
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
G + E ELF RM ++ + + M+ + +D A++L + MP + + S
Sbjct: 248 YGKMAEARELFDRMP-----SKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVS 299
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 52/270 (19%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G D +F L A L++ +G LH +K+G+ ++V AL+ MY
Sbjct: 447 MGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGR 506
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +VF + D+I+WNS++ +A G + A K + M + V
Sbjct: 507 VQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERV------------- 553
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
VP D V++ ++ A ++AG + ++FK M+ I
Sbjct: 554 ------------VP--DEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIE--------P 591
Query: 181 RSQLYIEVVDL----------FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
++ Y +VDL F+ ++ VK + S+L AC +LE G +A
Sbjct: 592 LAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGR----FA 647
Query: 231 TDNGLASNPHATTALI---DMYAKCGSIEQ 257
+ PH + I +M+A+ G E+
Sbjct: 648 AERLFELEPHNASNYITLSNMHAEAGRWEE 677
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 257/462 (55%), Gaps = 37/462 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
V +Y++ L++A+ +S G L K GF HV +QT L+ Y
Sbjct: 873 SVSPSSYTYSSLVQASAF--ASGFGESLQAHIWKFGFGFHVQIQTTLIGFY--------- 921
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
++ G++ A K+ D MP +D ++ M+S Y ++ +
Sbjct: 922 ----------------------SASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMD 959
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SA + +++P K+ +WN LI YT G +E A +F +M VK++I+W TM+ GY R++
Sbjct: 960 SANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKR 1019
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
Y E + +F +M + PD +T+++V+SACA+LG LE G +H+Y NG + + +A
Sbjct: 1020 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSA 1079
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMY+KCGS+E++L VF+ K++FCWN++I GLA HG+ ALK+ +M VK +
Sbjct: 1080 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 1139
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+TF+ + +AC+HAGLV+EG ++ M D+ + +EHYGCMV L +A L+ A+ELI
Sbjct: 1140 TVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELI 1199
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
+M FEP I GALL C IH++LEI + K++ + ++ G + ++YA +
Sbjct: 1200 GSMEFEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMILEP--MNSGYYFLLVSMYAEQNR 1257
Query: 424 WEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLAGGIGH 464
W + R M + GI K G+S I ++ H F A H
Sbjct: 1258 WRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSH 1299
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 35/226 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ D + ++ A L IG +H T++ GF VY+ +AL+ MY
Sbjct: 1030 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGS 1089
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A VF +P+K++ WNS+++ A+ G A+K+ M ++ V
Sbjct: 1090 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESV------------- 1136
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
+ V++ S+ A T+AG +E+ +++ M +V NV + M
Sbjct: 1137 --------------KPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCM 1182
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
V + ++ L E ++L M+ +P+ + ++L C +LE
Sbjct: 1183 VHLFSKAGLIYEALELIGSME---FEPNAVIWGALLDGCRIHKNLE 1225
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 120/290 (41%), Gaps = 16/290 (5%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N I A ++ ++ A +M NV +N ++ G++ I ++ + M +V
Sbjct: 816 NQFITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVS 875
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P T +S++ A A + H++ G + T LI Y+ G I ++ +V
Sbjct: 876 PSSYTYSSLVQASAFASGFGESLQAHIWKF--GFGFHVQIQTTLIGFYSASGRIREARKV 933
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + +D W M+ +A L +M + ++ T+ L+ + G +
Sbjct: 934 FDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEK----NEATWNCLIDGYTRLGNL 989
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGA 378
+ LF++M + + + M++ R + AI + M E P E +
Sbjct: 990 ELAESLFNQMP-----VKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMST 1044
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEA 427
++SAC LEIG V M ++ ++ D + ++Y+ CG E A
Sbjct: 1045 VISACAHLGVLEIGKEV-HMYTVQNGFVLDVYIGSALVDMYSKCGSLERA 1093
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 167/469 (35%), Positives = 274/469 (58%), Gaps = 16/469 (3%)
Query: 9 DNYSFPLLLKAAGILSSSCI------GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
D Y+ P LKA L + G +H K GF G + V+ AL+ +YG
Sbjct: 106 DGYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECG 165
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI---DLMPLKDVTSFNIMIS---- 115
DA +VF++M +D+++W +++ AF G+ A+ L+ D++P + T ++++
Sbjct: 166 DARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMDVVP-NEGTLACVLVACGRL 224
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
G AR GK Y+ + K +V N+++ Y +++ A +F ++LV++VI+W M
Sbjct: 225 GAARAGKAVHGWYLRRESDLKLIVG-NAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIM 283
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
++G ++ +L + +++F+EM+ VKPD + +++VLSAC +LG+LE+G +H Y G+
Sbjct: 284 ISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGI 343
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ H T+L+DMYAKCG +E SL +F K +K++ WNA+I G ALHG+G AL+
Sbjct: 344 EWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDR 403
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M S + ++++FI +L AC H+GLVQEG +LF M+ + ++ EHYG +VDLLGRA
Sbjct: 404 MVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSVVDLLGRAG 463
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L+ A + +AMP P GALLSAC H+ ++ ++ + V + S G + +
Sbjct: 464 LIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHVHELESSES-GVYALLS 522
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA +W + R R +M++ G+ K GSSVIEVNG +F+ G H
Sbjct: 523 NIYAVNHRWADVKRVRGLMSEKGLQKEPGSSVIEVNGKTSEFVVGQKNH 571
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 42/261 (16%)
Query: 201 KPDYLTVTSVLSACANLGSLET------GARIHVYATDNGLASNPHATTALIDMYAKCGS 254
+PD T+ + L ACA LG+ G ++H A G AL+ +Y CG
Sbjct: 104 RPDGYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGE 163
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ VF + +DV W A++ G AL L+G+M+ V ++ T +L A
Sbjct: 164 CGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVA 220
Query: 315 CSHAGLVQEG----------------------CELFSRMEK--------DFGVTRKLEHY 344
C G + G +++ + EK D + R + +
Sbjct: 221 CGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISW 280
Query: 345 GCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401
M+ L + +L +A+E+ M +P + +L +LSAC LE G V + +
Sbjct: 281 TIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIER 340
Query: 402 KSNYLSDGELMMFANLYASCG 422
K ++YA CG
Sbjct: 341 KGIEWDVHVGTSLVDMYAKCG 361
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 10/187 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ V D +L A L + G +H + G V+V T+L+ MY C
Sbjct: 303 MQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGC 362
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
++ + +F KMP K++ +WN++++ FA G A++ D M + SF I++
Sbjct: 363 LETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGA 422
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVKN-VI 170
G + +F+ + +S + S++ AG + +A + K M ++ V
Sbjct: 423 CCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVF 482
Query: 171 TWNTMVT 177
TW +++
Sbjct: 483 TWGALLS 489
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 165/465 (35%), Positives = 262/465 (56%), Gaps = 10/465 (2%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D ++FP LLK +L +G +LHGQ +K +Y++T LL MY + + A +F
Sbjct: 78 DRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLF 137
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGKIH 124
E+M ++ + W SM+ + + A+ L M D + ++S A + +
Sbjct: 138 ERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLG 197
Query: 125 SARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ + D+ V ++L+ Y G+++ A ++F ++ K+V W+ ++ GY+
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYV 257
Query: 181 RSQLYIEVVDLFDEMKAG-NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E + LF E+ G N++P+ +T+ +V+SACA LG LETG +H Y T +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+LIDM++KCG I+ + +F KD+ WN+M+ GLALHG G AL M +
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTT 377
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
++ D+ITFIG+L+ACSHAGLVQEG +LF +E +GV K EHYGCMVDLL RA LL
Sbjct: 378 DLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAE 437
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A E I MP +P +I G++L AC ++ +LE+G+ A+ + + +DG ++ +N+YA
Sbjct: 438 AREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCL-LELEPTNDGVYILLSNIYA 496
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
W E + R +MN+ GI KT G S + ++ H FLAG H
Sbjct: 497 RRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSH 541
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 166/321 (51%), Gaps = 19/321 (5%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYA 118
A+ VF D++ WNSML AF + A++ M + D +F ++ G A
Sbjct: 31 AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90
Query: 119 -----RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
++GK+ + + + D+ +L+ Y G+++ A +F++M +N + W
Sbjct: 91 LLLEFKVGKVLHGQ-VVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWT 149
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
+M++GY+++ E + L+ +M+ PD +T+ +++SACA L L G ++H + +
Sbjct: 150 SMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
+ +AL++MYAKCG ++ + +VF + KDV+ W+A+I G + AL+L
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLF 269
Query: 294 GEM-NDSCVKADDITFIGLLSACSHAGLVQEGC---ELFSRMEKDFGVTRKLEHYGCMVD 349
E+ S ++ +++T + ++SAC+ G ++ G + +R +K V+ ++D
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN----NSLID 325
Query: 350 LLGRARLLDRAIELIEAMPFE 370
+ + +D A + ++M ++
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYK 346
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 119/237 (50%), Gaps = 13/237 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G D + L+ A L +G+ LH + + +AL+ MY
Sbjct: 171 MEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGD 230
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-------DLMPLKDVTSFNIM 113
+ A +VF+++ +KD+ AW++++ + + A++L ++ P +VT +
Sbjct: 231 LKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRP-NEVTILAV- 288
Query: 114 ISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
IS A++G + + R++ D + V NSLI ++ G+++ A +F M K++
Sbjct: 289 ISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDL 348
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
I+WN+MV G L E + F M+ +++PD +T VL+AC++ G ++ G ++
Sbjct: 349 ISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKL 405
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 128/309 (41%), Gaps = 37/309 (11%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLTVTSVLSAC 214
A +F V +V+TWN+M+ ++ S + + + EM ++ NV PD T S+L C
Sbjct: 31 AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNV-PDRFTFPSLLKGC 89
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
A L + G +H L S+ + T L++MYA CG ++ + +F + ++ W
Sbjct: 90 ALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWT 149
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EK 333
+MI G + AL L +M + D++T L+SAC+ + G +L S + E
Sbjct: 150 SMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209
Query: 334 DFGVTRKL-----EHYGCMVDLLGRARLLDR------------------------AIELI 364
D + L Y DL ++ D+ A++L
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLF 269
Query: 365 EAMP----FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+ P E + A++SAC DLE G V + S ++++
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSK 329
Query: 421 CGQWEEANR 429
CG + A R
Sbjct: 330 CGDIDAAKR 338
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/496 (32%), Positives = 268/496 (54%), Gaps = 50/496 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ +N + L KA +S G +H +K GF +++V AL+ MY
Sbjct: 107 MHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQ 166
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--------------- 105
+ A K+F+ M ++D+++WN+++ ++ + ++L D M
Sbjct: 167 LGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILA 226
Query: 106 ------------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
DV N +I Y R A+ +FD++ +++VSW
Sbjct: 227 CSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSW 286
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+L++ + G + A ++F M ++VI+W +M+TGY ++ + + V LF EM A VK
Sbjct: 287 NALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVK 346
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +TV SVLSACA+LG L+ G +H Y +G+ ++ + +LIDMY KCG +E++LEV
Sbjct: 347 PDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEV 406
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F++ + KD W ++I GLA++G+ +AL L +M V+ TF+G+L AC+HAGLV
Sbjct: 407 FHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLV 466
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+G E F ME G+ ++HYGC+VDLL R+ +D+A E I+ MP P + LLS
Sbjct: 467 NKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLS 526
Query: 382 ACVIHQDLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
AC +H ++ + + K + C NY+ + +N YA +W++A + R +M D
Sbjct: 527 ACKLHGNVVLAEIATKRLLELDPCDSGNYV------LLSNTYAGVDRWDDAMKMRELMED 580
Query: 437 TGIVKTAGSSVIEVNG 452
+ + K +GSS IEV+G
Sbjct: 581 SDVQKPSGSSSIEVDG 596
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 173/376 (46%), Gaps = 41/376 (10%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYG-SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
LH I+T ++ + +++ Y S + A VF ++ ++ WN M+ +
Sbjct: 36 LHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSD 95
Query: 91 QMDHAMKLIDLMPLKDVTSFNI----MISGYARIGKIHSARYIFDKVPAKDVVSW----N 142
A+ + M + +T N+ + AR+ I S R I S+ N
Sbjct: 96 HPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSN 155
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+LI Y G++ A +MF ML +++++WNT++ GY + Y EV+ LFD M A N+K
Sbjct: 156 ALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKA 215
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D +T+ ++ AC++LG E + Y +N L + + LIDMY + E + VF
Sbjct: 216 DAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVF 275
Query: 263 YKSQVKDVFCWNAMILGLA--------------------------LHGYGYA-----ALK 291
+ + +++ WNA+++G A + GY A A+K
Sbjct: 276 DRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVK 335
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L EM + VK D +T +LSAC+H G + G + + + GV + ++D+
Sbjct: 336 LFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRR-HGVQADIYVGNSLIDMY 394
Query: 352 GRARLLDRAIELIEAM 367
+ ++++A+E+ M
Sbjct: 395 CKCGMVEKALEVFHRM 410
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 172/510 (33%), Positives = 264/510 (51%), Gaps = 47/510 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G + Y+F L A L+ G+ +H K+ VY+ +AL+ MY
Sbjct: 143 MHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGN 202
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------P----------- 103
++DA +VF++M ++++++WNS++ + G A+K+ +M P
Sbjct: 203 VNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISA 262
Query: 104 -----------------------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
D+ N + YA+ +I AR+IFD +P ++V++
Sbjct: 263 CASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIA 322
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
S++ Y A + A MF KM +NV++WN ++ GY ++ E + LF +K +V
Sbjct: 323 ETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV 382
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA------SNPHATTALIDMYAKCGS 254
P + T ++L ACA+L L G + HV+ +G + +LIDMY KCG
Sbjct: 383 CPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+E+ VF K +D WNAMI+G A +GYG AL+L EM DS K D IT IG+LSA
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSA 502
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
C HAG V+EG FS M +DFGV +HY CMVDLLGRA L+ A +IE MP +P
Sbjct: 503 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSV 562
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
I G+LL+AC +H+++ +G VA+ + S G ++ +N+YA G+W +A R +M
Sbjct: 563 IWGSLLAACKVHRNITLGKYVAEKLFEVETSNS-GPYVLLSNMYAELGKWGDAMNVRKLM 621
Query: 435 NDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S I++ G H F+ H
Sbjct: 622 RKEGVTKQPGCSWIKIPGHAHVFMVKDKSH 651
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 180/380 (47%), Gaps = 64/380 (16%)
Query: 15 LLLKAAGILSS------------SCIGLML--------HGQTIKTGFCGHVYVQTALLKM 54
+ LK AG LSS SCI L L H IK+GF V++Q L+
Sbjct: 5 IFLKLAGDLSSFTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDA 64
Query: 55 YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI 114
Y ++D ++F+KMP++++ WNS++ G +D A L MP +D ++N M+
Sbjct: 65 YAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMV 124
Query: 115 SGYARIGKIHSARYIF--------------------------------------DKVPA- 135
SG+A+ + A Y F K P
Sbjct: 125 SGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCL 184
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
DV ++L+ Y+ G + A ++F +M +NV++WN+++T Y ++ +E + +F M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVM 244
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGS 254
V+PD +T+ SV+SACA+L +++ G +H + L ++ + A +DMYAKC
Sbjct: 245 LESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSR 304
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
I+++ +F +++V +M+ G A+ AA + +M + V +++ L++
Sbjct: 305 IKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNV----VSWNALIAG 360
Query: 315 CSHAGLVQEGCELFSRMEKD 334
+ G +E LF ++++
Sbjct: 361 YTQNGENEEALSLFCLLKRE 380
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 141/259 (54%), Gaps = 2/259 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I YA+ G + R +FDK+P ++V +WNS++ T G +++A +F+ M ++
Sbjct: 59 NRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
TWN+MV+G+ + E + F M K G V +Y T S LSAC+ L + G +IH
Sbjct: 119 TWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEY-TFASGLSACSGLNDMNRGVQIHSL 177
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ S+ + +AL+DMY+KCG++ + +VF + ++V WN++I +G A
Sbjct: 178 IAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEA 237
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
LK+ M +S V+ D++T ++SAC+ ++ G E+ +R+ K + + VD
Sbjct: 238 LKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVD 297
Query: 350 LLGRARLLDRAIELIEAMP 368
+ + + A + ++MP
Sbjct: 298 MYAKCSRIKEARFIFDSMP 316
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/418 (36%), Positives = 250/418 (59%), Gaps = 5/418 (1%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V +T ++ Y + + +A +F++MP +++++W +M+ + Q+D A KL ++MP
Sbjct: 253 VVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE 312
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K+ S+ M+ GY G++ A +F+ +P K VV+ N++IL + GE+ KA ++F +M
Sbjct: 313 KNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQM 372
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
K+ TW+ M+ Y R L ++ ++LF M+ ++P++ ++ SVLS CA L +L+ G
Sbjct: 373 REKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGR 432
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
IH + + + + L+ MY KCG++ ++ +VF + VKDV WN++I G A HG
Sbjct: 433 EIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHG 492
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
G AL++ +M+ S + DD+TF+G+LSACS+ G V++G E+F+ ME + V +K+EHY
Sbjct: 493 LGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHY 552
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK--MVCAK 402
CMVDLLGRA L+ A++LIE MP E I GALL AC H L++ + AK +V
Sbjct: 553 ACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEP 612
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
N G ++ +N+YAS G+W++ R M D + K G S I V HKF G
Sbjct: 613 KNA---GPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGG 667
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 159/334 (47%), Gaps = 36/334 (10%)
Query: 29 GLMLHGQTIKTGFCGHVYV-QTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
GLM + +C + + + +L+ Y L I+ A VF++M +K+II+WNS++ +
Sbjct: 81 GLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYF 140
Query: 88 SCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
+ A + D M ++ S+N ++SGY G I+ AR +FD++P ++VVSW +++
Sbjct: 141 QNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRG 200
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G + +A +F +M KNV++W M+ G L+ E LFD M + D +T
Sbjct: 201 YVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP----EKDVVTR 256
Query: 208 TSVLSACANLGSL--------ETGAR--------IHVYATDNGL-----------ASNPH 240
T+++ +G L E R I Y + + N
Sbjct: 257 TNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEV 316
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ TA++ Y CG ++++ E+F +K V NAMIL +G A ++ +M +
Sbjct: 317 SWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREK- 375
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
D+ T+ ++ GL + ELF M+++
Sbjct: 376 ---DEGTWSAMIKVYERKGLELDALELFRMMQRE 406
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 98/203 (48%), Gaps = 15/203 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + S +L L++ G +H Q +++ F VYV + LL MY
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN 462
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCG------QMDHAMKLIDLMPLKDVTSFNIMI 114
+ A +VF++ KD++ WNS++ +A G ++ H M +MP D +F ++
Sbjct: 463 LAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMP--DDVTFVGVL 520
Query: 115 SGYARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
S + G + IF+ + K + + ++ AG++ +A ++ +KM ++ +
Sbjct: 521 SACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEAD 580
Query: 169 VITWNTMVTGYLRSQLYIEVVDL 191
I W ++ G R+ + +++ ++
Sbjct: 581 AIIWGALL-GACRTHMKLDLAEV 602
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/468 (35%), Positives = 253/468 (54%), Gaps = 11/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV ++FP LLKA L + H +K GF ++V+ +L+ Y +
Sbjct: 95 MRRNGVVPSRHTFPPLLKAVFKLRDAN-PFQFHAHILKFGFDSDLFVRNSLISGYSNCGL 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
+ +VF+ +KD+++W +M+D F AM M V + + +
Sbjct: 154 FEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKA 213
Query: 118 ------ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
R G+ Y+ DV +SL+ Y G + A ++F +M +NV+T
Sbjct: 214 TRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVT 273
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W ++ GY++ + + + + +F+EM +V P+ T++SVLSACA++G+L G R+H Y
Sbjct: 274 WTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVI 333
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N + N T LID YAKCG +E+++ VF + + K+V+ W AMI G A HGY A+
Sbjct: 334 KNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVD 393
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L M S V +++TFI +LSAC+H GLV+EG LF M++ F + K +HY CMVDL
Sbjct: 394 LFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLF 453
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GR LL+ A LIE MP EPT ++ GAL +C+IH+D E+G A V K G
Sbjct: 454 GRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVI-KLQPSHSGRY 512
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ ANLY+ W++ R R M D +VK+ G S IEV G H+F+A
Sbjct: 513 TLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIA 560
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/418 (36%), Positives = 250/418 (59%), Gaps = 5/418 (1%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V +T ++ Y + + +A +F++MP +++++W +M+ + Q+D A KL ++MP
Sbjct: 253 VVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE 312
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K+ S+ M+ GY G++ A +F+ +P K VV+ N++IL + GE+ KA ++F +M
Sbjct: 313 KNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQM 372
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
K+ TW+ M+ Y R L ++ ++LF M+ ++P++ ++ SVLS CA L +L+ G
Sbjct: 373 REKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGR 432
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
IH + + + + L+ MY KCG++ ++ +VF + VKDV WN++I G A HG
Sbjct: 433 EIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHG 492
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
G AL++ +M+ S + DD+TF+G+LSACS+ G V++G E+F+ ME + V +K+EHY
Sbjct: 493 LGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHY 552
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK--MVCAK 402
CMVDLLGRA L+ A++LIE MP E I GALL AC H L++ + AK +V
Sbjct: 553 ACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEP 612
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
N G ++ +N+YAS G+W++ R M D + K G S I V HKF G
Sbjct: 613 KNA---GPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGG 667
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 159/334 (47%), Gaps = 36/334 (10%)
Query: 29 GLMLHGQTIKTGFCGHVYV-QTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
GLM + +C + + + +L+ Y L I+ A VF++M +K+II+WNS++ +
Sbjct: 81 GLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYF 140
Query: 88 SCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
+ A + D M ++ S+N ++SGY G I+ AR +FD++P ++VVSW +++
Sbjct: 141 QNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRG 200
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G + +A +F +M KNV++W M+ G L+ E LFD M + D +T
Sbjct: 201 YVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP----EKDVVTR 256
Query: 208 TSVLSACANLGSL--------ETGAR--------IHVYATDNGL-----------ASNPH 240
T+++ +G L E R I Y + + N
Sbjct: 257 TNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEV 316
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ TA++ Y CG ++++ E+F +K V NAMIL +G A ++ +M +
Sbjct: 317 SWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREK- 375
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
D+ T+ ++ GL + ELF M+++
Sbjct: 376 ---DEGTWSAMIKVYERKGLELDALELFRMMQRE 406
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 98/203 (48%), Gaps = 15/203 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + S +L L++ G +H Q +++ F VYV + LL MY
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN 462
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCG------QMDHAMKLIDLMPLKDVTSFNIMI 114
+ A +VF++ KD++ WNS++ +A G ++ H M +MP D +F ++
Sbjct: 463 LAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMP--DDVTFVGVL 520
Query: 115 SGYARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
S + G + IF+ + K + + ++ AG++ +A ++ +KM ++ +
Sbjct: 521 SACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEAD 580
Query: 169 VITWNTMVTGYLRSQLYIEVVDL 191
I W ++ G R+ + +++ ++
Sbjct: 581 AIIWGALL-GACRTHMKLDLAEV 602
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/468 (35%), Positives = 264/468 (56%), Gaps = 11/468 (2%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D ++ LK+ + + +G + +K G +V ++L+ MY S R + A
Sbjct: 115 VCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQ 174
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYARI 120
+F+ + E ++ WN+++ A+ G +++ M ++T ++ ++ RI
Sbjct: 175 LLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSV-VTACGRI 233
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
G +++ + V K +V +L+ A Y GE+ KA +F M ++V+ W+ M+
Sbjct: 234 GDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMI 293
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+GY ++ E + LF EM+ V+P+ +T+ SVLSACA LG+LETG +H Y L+
Sbjct: 294 SGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLS 353
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
TAL+D YAKCG I+ ++E F VK+ + W A+I G+A +G G AL+L M
Sbjct: 354 LTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSM 413
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ ++ D+TFIG+L ACSH+ LV+EG F M +D+G+ + EHYGC+VDLLGRA L
Sbjct: 414 RKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGL 473
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
+D A + I MP EP I ALLS+C +H+++EIG+ K + + N G+ ++ +N
Sbjct: 474 IDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSL-NPSHSGDYILLSN 532
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+YAS GQW+ A R M D GI KT G S+IE++G +F A H
Sbjct: 533 IYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDH 580
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 145/312 (46%), Gaps = 13/312 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E+GV D + ++ A G + + +G + + G + + TAL+ MY
Sbjct: 211 MLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGE 270
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+ A ++F+ M +D++AW++M+ + Q A+ L M L +V ++ ++S
Sbjct: 271 LGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSA 330
Query: 117 YARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + + +++ + K ++ +L+ Y G ++ A E F+ M VKN TW
Sbjct: 331 CAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTW 390
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYAT 231
++ G + E ++LF M+ +++P +T VL AC++ +E G R
Sbjct: 391 TALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQ 450
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG---YGY 287
D G+ ++D+ + G I+++ + ++ + W A++ A+H G
Sbjct: 451 DYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGE 510
Query: 288 AALKLLGEMNDS 299
ALK + +N S
Sbjct: 511 EALKQIVSLNPS 522
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 121/291 (41%), Gaps = 36/291 (12%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+N ++ L + + + LF EM +V PD TV L +C+ + +L+ G I YA
Sbjct: 86 YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
GL ++ ++LI MYA C + + +F + V WNA+I +G +
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
++ M + V D+IT + +++AC G + G + + + G+ R ++D+
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG-KWVAEYVDEKGLVRNRNLMTALIDM 264
Query: 351 ------LGRARLL-------------------------DRAIELIEAMPF---EPTESIL 376
LG+AR L A+ L M EP + +
Sbjct: 265 YAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTM 324
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
++LSAC + LE G V + K L+ + YA CG ++A
Sbjct: 325 VSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDA 375
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 225/354 (63%), Gaps = 1/354 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N+++ YA G++ AR +F+K+P +DVV+WN +I G+ E A ++F +M +NV
Sbjct: 167 NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVR 226
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +M+ GY++ E + LF +M+ VK + +TV +VL+ACA+LG+L+ G RIH Y+
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G N + LIDMY KCG +E++ +VF + + + V W+AMI GLA+HG AL
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEAL 346
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L +M+ ++ + +TFIGLL ACSH GL+ EG F+ M +D+G+ ++EHYGCMVDL
Sbjct: 347 RLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDL 406
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
L RA LL A E I MP +P + GALL AC +H+++E+ + K + + + L+DG
Sbjct: 407 LSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL-LELDPLNDGY 465
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA G+WE+ R R M D + KT G S I V+G H+F+AG H
Sbjct: 466 YVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESH 519
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 148/324 (45%), Gaps = 41/324 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ V D ++ +L+A L G +LHG K GF ++Y+Q ++ +Y S
Sbjct: 119 LRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGE 178
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +A +FEKMP++D++ WN M+ G + A L MP ++V S+ MI+GY +
Sbjct: 179 MGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQC 238
Query: 121 GKIHSARYIFDKVP---------------------------------------AKDVVSW 141
GK A ++F K+ ++V
Sbjct: 239 GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRIS 298
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y G +E+A ++F++M + V++W+ M+ G E + LF +M ++
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIE 358
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYAT-DNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T +L AC+++G + G R T D G+ ++D+ ++ G + ++ E
Sbjct: 359 PNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHE 418
Query: 261 VFYKSQVK-DVFCWNAMILGLALH 283
+K + W A++ +H
Sbjct: 419 FILNMPMKPNGVVWGALLGACRVH 442
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 32/229 (13%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
WN+ + I+ + LF ++ +V PD T +SVL AC NL L G +H
Sbjct: 94 FVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGV 153
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG----- 284
G SN + ++ +YA CG + ++ +F K +DV WN MI L G
Sbjct: 154 VEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGA 213
Query: 285 -------------------YGYA-------ALKLLGEMNDSCVKADDITFIGLLSACSHA 318
GY A+ L +M ++ VK +++T + +L+AC+
Sbjct: 214 YDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADL 273
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
G + G + + G R + ++D+ + L+ A ++ E M
Sbjct: 274 GALDLGMRIHEYSNRH-GFKRNVRISNTLIDMYVKCGCLEEACKVFEEM 321
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 223/360 (61%), Gaps = 1/360 (0%)
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
+D N ++ YA +G I++AR +F ++ DVVSW +I Y G+ + A E+F +M
Sbjct: 150 QDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRM 209
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+N++TW+TM++GY R+ + + V+ F+ ++A V + + V+S+CA+LG+L G
Sbjct: 210 PERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGE 269
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+ H Y N L+ N TA++DMYA+CG++E+++ VF + KDV CW A+I GLA+HG
Sbjct: 270 KAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHG 329
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
Y AL EM DITF +L+ACSHAG+V+ G E+F M++D GV +LEHY
Sbjct: 330 YAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHY 389
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
GCMVDLLGRA L +A + + MP +P I ALL AC IH+++E+G+RV K++
Sbjct: 390 GCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQP 449
Query: 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G ++ +N+YA +W++ R MM D G+ K G S+IE++G H+F G H
Sbjct: 450 EYS-GHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTH 508
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 148/322 (45%), Gaps = 41/322 (12%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
G+ DN + P L+KA L ++ +G+ HGQ IK GF YVQ +L+ MY S+ I+
Sbjct: 110 RFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDIN 169
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
A VF++M D+++W M+ + CG A +L D MP +++ +++ MISGYAR
Sbjct: 170 AARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNC 229
Query: 123 IHSARYIFDKVPAKDVVSWNSLILA----------------------------------- 147
A F+ + A+ VV+ ++++
Sbjct: 230 FEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTA 289
Query: 148 ----YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
Y G +EKA +F+++ K+V+ W ++ G + + F EM P
Sbjct: 290 VVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPR 349
Query: 204 YLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T T+VL+AC++ G +E G I D+G+ ++D+ + G + ++ +
Sbjct: 350 DITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFV 409
Query: 263 YKSQVK-DVFCWNAMILGLALH 283
K VK + W A++ +H
Sbjct: 410 LKMPVKPNAPIWRALLGACRIH 431
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 47/231 (20%)
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +T ++ ACA L + G + H A +G + + +L+ MYA G I + V
Sbjct: 115 PDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSV 174
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + DV W MI G G
Sbjct: 175 FQRMCRFDVVSWTCMIAGY-----------------------------------HRCGDA 199
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGA 378
+ ELF RM + R L + M+ R ++A+E EA+ E E+++
Sbjct: 200 KSARELFDRMPE-----RNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVG 254
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCGQWEEA 427
++S+C L +G++ + V N LS ++ A ++YA CG E+A
Sbjct: 255 VISSCAHLGALAMGEKAHEYVM--RNKLSLNLILGTAVVDMYARCGNVEKA 303
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q GV A+ ++ + L + +G H ++ ++ + TA++ MY
Sbjct: 240 LQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGN 299
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMIS 115
++ A VFE++PEKD++ W +++ A G + A+ M K D+T F +++
Sbjct: 300 VEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDIT-FTAVLT 358
Query: 116 GYARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
+ G + IF+ + V + ++ AG++ KA + KM VK N
Sbjct: 359 ACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNA 418
Query: 170 ITWNTMVTGYLRSQLYIEV 188
W ++ G R +EV
Sbjct: 419 PIWRALL-GACRIHKNVEV 436
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/449 (35%), Positives = 252/449 (56%), Gaps = 36/449 (8%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-------------- 96
L + Y SL +D + +F + + W +++ A G + A+
Sbjct: 15 LQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPN 74
Query: 97 --------KLIDLMPLKDVTSFNI-------------MISGYARIGKIHSARYIFDKVPA 135
KL + P K + S + ++ YAR G + SA+ +FD +P
Sbjct: 75 AFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
K +VS +++ Y GE++ A +F M ++ + WN M+ GY ++ + E + LF M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
KP+ +TV SVLSAC LG+LE+G +H Y +NG+ N H TAL+DMY+KCGS+
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSL 254
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
E + VF K KDV WN+MI+G A+ G+ AL+L M + +ITFIG+LSAC
Sbjct: 255 EDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSAC 314
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
H+G V EG ++F++M+ ++G+ K+EHYGCMV+LLGRA +++A EL++ M EP +
Sbjct: 315 GHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVL 374
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
G LL AC +H + +G+++ +++ N + G ++ +N+YA+ G W+ R R MM
Sbjct: 375 WGTLLGACRLHGKIALGEKIVELL-VDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMK 433
Query: 436 DTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
D+G+ K G S IEVN H+FLAGG+ H
Sbjct: 434 DSGVKKEPGCSSIEVNNKVHEFLAGGLNH 462
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 167/380 (43%), Gaps = 53/380 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + ++F +LK I G LH Q +K GF +YV+T LL +Y + A
Sbjct: 70 GVEPNAFTFSSILKLCPIEP----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSA 125
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
++F+ MPEK +++ +ML +A G++D A L D M +D +N+MI GY + G +
Sbjct: 126 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPN 185
Query: 125 SARYIF----------DKVPAKDVVS------------W-----------------NSLI 145
A +F ++V V+S W +L+
Sbjct: 186 EALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALV 245
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y+ G +E A +F K+ K+V+ WN+M+ GY E + LF M + P +
Sbjct: 246 DMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNI 305
Query: 206 TVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T +LSAC + G + G I D G+ ++++ + G +EQ+ E+
Sbjct: 306 TFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKN 365
Query: 265 SQVK-DVFCWNAMILGLALHG---YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
++ D W ++ LHG G ++LL + N A+ T+I LLS A
Sbjct: 366 MNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN----LANSGTYI-LLSNIYAAVG 420
Query: 321 VQEGCELFSRMEKDFGVTRK 340
+G M KD GV ++
Sbjct: 421 NWDGVARLRTMMKDSGVKKE 440
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 37/261 (14%)
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
DK P V + L +Y + G ++ + +F + +V W ++ G+ L+ + ++
Sbjct: 3 DKKPPA-XVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALN 61
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
+ +M V+P+ T +S+L C +E G +H A G S+ + T L+D+YA
Sbjct: 62 FYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYA 117
Query: 251 KCGSIEQSLEVF----YKSQV---------------------------KDVFCWNAMILG 279
+ G + + ++F KS V +D CWN MI G
Sbjct: 118 RGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDG 177
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
+G AL L M + K +++T + +LSAC G ++ G + S +E + G+
Sbjct: 178 YTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN-GIQF 236
Query: 340 KLEHYGCMVDLLGRARLLDRA 360
+ +VD+ + L+ A
Sbjct: 237 NVHVGTALVDMYSKCGSLEDA 257
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/475 (33%), Positives = 263/475 (55%), Gaps = 38/475 (8%)
Query: 9 DNYSFPLLLKAAGILSS-SCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR-------- 59
D+++FP L K+A S G +H Q + G + +LL MY +LR
Sbjct: 91 DHFTFPPLAKSASKFPSFPRTGAQVHAQAARRGLLADAFAVNSLLAMYAALRDAASMRGV 150
Query: 60 ---CID---------------------DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA 95
C + +A + F+ MP ++ +W++M+ A+A+ GQ+D A
Sbjct: 151 LESCAEAADVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVA 210
Query: 96 MKLIDLMPL--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE 153
+ D P + V ++N M++G AR G + AR +FD++PA+++VSWN+++ Y G+
Sbjct: 211 RDMFDRAPAAGRSVVTWNSMVAGLARHGLLPLARKMFDEMPARNLVSWNAMVRGYAVNGD 270
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
++ A E+F M K+V++W MV+GY R+ + + ++LF M++G+V+P+ +T+ SV SA
Sbjct: 271 VDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSA 330
Query: 214 CANLGSLETGARIHVYATDNGLASNP--HATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
CA L +L+ G H + G+ + + ALIDMYAKCG + + +VF K+V
Sbjct: 331 CARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSLDRKNVS 390
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WNA+I GLA +G + + +M S K D +TF+ +L+AC+ AGLV EG F M
Sbjct: 391 AWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACARAGLVDEGRRCFRSM 450
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
FGV +L+HYGCMVDLLGRA L+D A EL+ MP P + +L LL AC + + ++
Sbjct: 451 SSGFGVQPELKHYGCMVDLLGRAGLVDEAEELVRGMPMAPDDKVLATLLGACRVRRRPDV 510
Query: 392 GDRVAKMVCA-KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
+RV + + + + S M +++ A+ +W A + + M+ I+K GS
Sbjct: 511 AERVRRRIQSLNTKQPSRESYFMISDVRATADRWAVALKAKGFMHKYNIMKLDGS 565
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 83/301 (27%)
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSL-ETGARIHVYATDNGLASNPHATTALIDM----- 248
+++G++ PD+ T + + + S TGA++H A GL ++ A +L+ M
Sbjct: 84 LRSGHL-PDHFTFPPLAKSASKFPSFPRTGAQVHAQAARRGLLADAFAVNSLLAMYAALR 142
Query: 249 ---------------------------YAKCGSIEQSLEVF-----------------YK 264
YA+CG + + F Y
Sbjct: 143 DAASMRGVLESCAEAADVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYA 202
Query: 265 SQ-----VKDVF-----------CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
+ +D+F WN+M+ GLA HG L L +M D + +++
Sbjct: 203 AAGQLDVARDMFDRAPAAGRSVVTWNSMVAGLARHGL----LPLARKMFDEMPARNLVSW 258
Query: 309 IGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
++ + G V ELF M EKD + + CMV RA +A+EL M
Sbjct: 259 NAMVRGYAVNGDVDGARELFDAMPEKD------VVSWTCMVSGYARAGRHAQALELFRTM 312
Query: 368 P---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCG 422
P E + ++ SAC L+ G + + L DG + A ++YA CG
Sbjct: 313 QSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCG 372
Query: 423 Q 423
+
Sbjct: 373 R 373
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 276/472 (58%), Gaps = 13/472 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D Y+FP++LKA G +HG +K GF +YVQ +LL Y A
Sbjct: 100 GFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGA 159
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL---IDLMPLKDVTSFNIMISGYARIG 121
+VF++M +D+++W ++ + G D A+ L +D++P +V +F ++ R+G
Sbjct: 160 GRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVVP--NVATFVSVLVACGRMG 217
Query: 122 KIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ + ++ + +V N+L+ Y + +A ++F ++ +++++W ++++
Sbjct: 218 YLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIIS 277
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G ++ + + ++LF +M+ V+PD + +TSVLSACA+LG+L+ G + Y G+
Sbjct: 278 GLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEW 337
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ H TAL+DMYAKCG IE +L +F +++F WNA++ GLA+HG+G+ ALK M
Sbjct: 338 DIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMI 397
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARL 356
+ ++ +++TF+ +L+AC H+GLV EG F +M + F + +LEHYGCM+DLL RA L
Sbjct: 398 GAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGL 457
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGELMMFA 415
LD A + I MP P I GALLSAC + ++E+ + + ++ KS G ++ +
Sbjct: 458 LDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQ--DSGVYVLLS 515
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
N+YA+ +W++ R R +M D GI K GSSVIEV+G H+FL G H N
Sbjct: 516 NIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRN 567
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 103/261 (39%), Gaps = 44/261 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D +L A L + G + + G +++ TAL+ MY C
Sbjct: 295 MQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGC 354
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A +F +P ++I WN++L A G A+K F +MI R
Sbjct: 355 IEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALK-----------HFELMIGAGIR- 402
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK------NVITWNT 174
+ V++ +++ A ++G + + F +M+ + + +
Sbjct: 403 ---------------PNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGC 447
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI-----HVY 229
M+ R+ L E M + PD L ++LSAC G++E I +
Sbjct: 448 MIDLLCRAGLLDEAYKFIRNMP---LPPDVLIWGALLSACKANGNVELSQEILSHLLELK 504
Query: 230 ATDNG---LASNPHATTALID 247
+ D+G L SN +AT D
Sbjct: 505 SQDSGVYVLLSNIYATNERWD 525
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/469 (34%), Positives = 274/469 (58%), Gaps = 13/469 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D ++FP +LK+ G +HG IK GF ++YV+ +L+ Y + DA
Sbjct: 29 GFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDA 88
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL---IDLMPLKDVTSFNIMIS----GY 117
+VF++M +D+++W ++ + G D A+ L +D+ P T +++++ GY
Sbjct: 89 SRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMDVEP-NAATFVSVLVACGRKGY 147
Query: 118 ARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+GK IH F + N+L+ Y G + A ++F ++ K++++W +++
Sbjct: 148 LSVGKGIHGLS--FKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSII 205
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+G ++ E ++LF +M++ ++PD + +TSVLSACA LG+L+ G +H + +
Sbjct: 206 SGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIK 265
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ TA++DMYAKCG IE S+++F K+V WNA++ GLA+HG+ Y L+L EM
Sbjct: 266 WDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEM 325
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME-KDFGVTRKLEHYGCMVDLLGRAR 355
++ +++TF+ +L+AC H GLV EG + F+ M+ + + + +LEHYGCMVDLL RAR
Sbjct: 326 VRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRAR 385
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
LLD A+EL +AMP P I+GALLSAC + + E+ + ++ S G ++ +
Sbjct: 386 LLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSHDS-GVYVLLS 444
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N++A +W++ R R +M + GI K GS+VIE++G H+F+ G H
Sbjct: 445 NIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIELDGKAHEFIVGDTRH 493
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 131/270 (48%), Gaps = 12/270 (4%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
+ V + +F +L A G +G +HG + K+ F + V AL+ MY C+
Sbjct: 125 RMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLP 184
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM----ISGYA 118
A +VF+++ EKDI++W S++ C A++L M + I+ +S A
Sbjct: 185 GAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACA 244
Query: 119 RIGKIHSARYIFDKVPAKDVVSWN-----SLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
R+G + R++ + + K + W+ +++ Y G +E + ++F M KNV+TWN
Sbjct: 245 RLGALDYGRWVHEHIDRK-AIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWN 303
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
++ G +V++LF+EM ++P+ +T ++L+AC + G + G + +
Sbjct: 304 ALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQ 363
Query: 234 GLASNPHAT--TALIDMYAKCGSIEQSLEV 261
P ++D+ + ++++LE+
Sbjct: 364 QYNLPPRLEHYGCMVDLLCRARLLDEALEL 393
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 44/261 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D +L A L + G +H + + + TA++ MY C
Sbjct: 224 MQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGC 283
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ + ++F MP K+++ WN++L+ A G HA K+++L F M+ R+
Sbjct: 284 IEMSMQIFNGMPHKNVLTWNALLNGLAMHG---HAYKVLEL--------FEEMV----RV 328
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM------LVKNVITWNT 174
G + V++ +++ A + G + + + F M L + +
Sbjct: 329 GM------------RPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGC 376
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI-----HVY 229
MV R++L E ++L KA + PD + ++LSAC G+ E I +
Sbjct: 377 MVDLLCRARLLDEALEL---TKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELD 433
Query: 230 ATDNG---LASNPHATTALID 247
+ D+G L SN HA D
Sbjct: 434 SHDSGVYVLLSNIHAINQRWD 454
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 225/354 (63%), Gaps = 1/354 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N+++ YA G++ AR +F+K+P +DVV+WN +I G+ E A ++F +M +NV
Sbjct: 167 NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVR 226
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +M+ GY++ E + LF +M+ VK + +TV +VL+ACA+LG+L+ G RIH Y+
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G N + LIDMY KCG +E++ +VF + + + V W+AMI GLA+HG AL
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEAL 346
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L +M+ ++ + +TFIGLL ACSH GL+ EG F+ M +D+G+ ++EHYGCMVDL
Sbjct: 347 RLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDL 406
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
L RA LL A E I MP +P + GALL AC +H+++E+ + K + + + L+DG
Sbjct: 407 LSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL-LELDPLNDGY 465
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA G+WE+ R R M D + KT G S I V+G H+F+AG H
Sbjct: 466 YVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESH 519
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 148/324 (45%), Gaps = 41/324 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ V D ++ +L+A L G +LHG K GF ++Y+Q ++ +Y S
Sbjct: 119 LRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGE 178
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +A +FEKMP++D++ WN M+ G + A L MP ++V S+ MI+GY +
Sbjct: 179 MGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQC 238
Query: 121 GKIHSARYIFDKVP---------------------------------------AKDVVSW 141
GK A ++F K+ ++V
Sbjct: 239 GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRIS 298
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y G +E+A ++F++M + V++W+ M+ G E + LF +M ++
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIE 358
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYAT-DNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T +L AC+++G + G R T D G+ ++D+ ++ G + ++ E
Sbjct: 359 PNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHE 418
Query: 261 VFYKSQVK-DVFCWNAMILGLALH 283
+K + W A++ +H
Sbjct: 419 FILNMPMKPNGVVWGALLGACRVH 442
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 36/257 (14%)
Query: 144 LILAYTNAGEMEKAGEMFK--KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
L+ A+T + A ++FK + WN+ + I+ + LF ++ +V
Sbjct: 68 LVCAFTPS--FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC 125
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T +SVL AC NL L G +H G SN + ++ +YA CG + ++ +
Sbjct: 126 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLL 185
Query: 262 FYKSQVKDVFCWNAMILGLALHG------------------------YGYA-------AL 290
F K +DV WN MI L G GY A+
Sbjct: 186 FEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAI 245
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M ++ VK +++T + +L+AC+ G + G + + G R + ++D+
Sbjct: 246 HLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRH-GFKRNVRISNTLIDM 304
Query: 351 LGRARLLDRAIELIEAM 367
+ L+ A ++ E M
Sbjct: 305 YVKCGCLEEACKVFEEM 321
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/464 (35%), Positives = 254/464 (54%), Gaps = 28/464 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + + D +FP +LK+A LS+ +G LH +K G +V+ +L+ MY +
Sbjct: 131 MLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEE 190
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A KVF++ PE + V +N++I GY R+
Sbjct: 191 LGSALKVFDESPES---------------------------VKNGSVLIWNVLIHGYCRM 223
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A +FD +P KD SWNSLI + G+M +A E+F KM KNV++W TMV G+
Sbjct: 224 GDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFS 283
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ + ++ F M +P+ T+ S LSACA +G+L+ G RIH Y + NG N
Sbjct: 284 QNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLV 343
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TAL+DMYAKCG+IE + +VF++++ K + W+ MI G A+HG+ AL+ M +
Sbjct: 344 IGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTG 403
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
K D + F+ +L+ACSH+G V EG + F M + + + ++HY +VD+LGRA LD A
Sbjct: 404 TKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEA 463
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
++ I AMP P + GAL AC H+++E+ + +K + + G + +N YAS
Sbjct: 464 LKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLL-QLEPKHPGSYVFLSNAYAS 522
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+W++A R R M D G K G S IEV+ H+F+AG H
Sbjct: 523 VGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTH 566
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 34/337 (10%)
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
++ +IH Y + + VV+ I + ++ ++ A +F++ +KN +N ++ G
Sbjct: 57 KLRQIHGQLYRCNVFSSSRVVT--QFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRG 114
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+ + + F M + PD LT VL + A L + G +H GL +
Sbjct: 115 LAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFD 174
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKS--QVKD--VFCWNAMILGLALHGY-GYAALKLL 293
+L+DMY K + +L+VF +S VK+ V WN +I HGY L
Sbjct: 175 SFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLI-----HGYCRMGDLVKA 229
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
E+ DS K D ++ L++ G + ELF +M + + + + MV+ +
Sbjct: 230 TELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPE-----KNVVSWTTMVNGFSQ 284
Query: 354 ARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
++A+E M E P + + + LSAC L+ G R+ NYLS
Sbjct: 285 NGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRI-------HNYLSGNG 337
Query: 411 LMM-------FANLYASCGQWEEANRWRNMMNDTGIV 440
+ ++YA CG E A + + + G++
Sbjct: 338 FKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLL 374
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/361 (42%), Positives = 224/361 (62%), Gaps = 4/361 (1%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D+ + N +I+ YA G A +FD++ D VSWNS+I Y AGEM+ A +F+KM
Sbjct: 144 DIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMP 203
Query: 166 VKN-VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
KN I+W TM++GY+++ + E + LF EM+ NV PD +++ S LSAC+ LG+LE G
Sbjct: 204 EKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGK 263
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
IH YA + LIDMYAKCG +E++L VF + K V W A+I G A HG
Sbjct: 264 WIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHG 323
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
G A+ EM + VK + ITF +L+ACS+ GLV+EG +F+ +E+D+ + +EHY
Sbjct: 324 LGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHY 383
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA-KS 403
GCMVDLLGRA LL+ A I+ MP +P I G+LL AC IH+++E+G+++ +++ S
Sbjct: 384 GCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDS 443
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIG 463
N+ G + AN++A +W++A R +M + G+VK G S I + G+ H+FLAG
Sbjct: 444 NH--GGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRS 501
Query: 464 H 464
H
Sbjct: 502 H 502
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 136/315 (43%), Gaps = 42/315 (13%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y+FP LLKA LS+ +H K G+ +Y +L+ Y A +F++
Sbjct: 111 YTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDR 170
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKIHSARYI 129
+ E D ++WNS++ + G+MD A+ L MP K + S+ MISGY + G A +
Sbjct: 171 IQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQL 230
Query: 130 FDKVPAKDVVSWN---------------------------------------SLILAYTN 150
F ++ +V N LI Y
Sbjct: 231 FHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAK 290
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
GEME+A +FK M K+V W +++GY L E + F EM+ VKP+ +T T+V
Sbjct: 291 CGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAV 350
Query: 211 LSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK- 268
L+AC+ G +E G + + D L ++D+ + G + ++ K +K
Sbjct: 351 LTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKP 410
Query: 269 DVFCWNAMILGLALH 283
+ W +++ +H
Sbjct: 411 NAVIWGSLLKACQIH 425
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 37/277 (13%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+ WN M+ G S + L+ M + + T +L AC+NL + + +IH
Sbjct: 74 DTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIH 133
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ T G + +A +LI+ YA G+ + + +F + Q D WN++I G G
Sbjct: 134 AHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMD 193
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL L +M + K + I++ ++S AG+ +E +LF M+
Sbjct: 194 MALTLFRKMPE---KNNAISWTTMISGYVQAGMNKEALQLFHEMQNS------------- 237
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
+P P L + LSAC LE G + +
Sbjct: 238 ------------------NVP--PDNVSLASALSACSQLGALEQGKWIHSYANKTRTRID 277
Query: 408 DGELMMFANLYASCGQWEEA-NRWRNMMNDTGIVKTA 443
+ ++YA CG+ EEA ++NM + V TA
Sbjct: 278 SVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTA 314
>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/489 (33%), Positives = 261/489 (53%), Gaps = 45/489 (9%)
Query: 13 FPLLLKAAGILSSSCIGL--MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
P+LLKAA S + GL LH + +K+ F + V T ++ MY + DA + F++
Sbjct: 57 LPILLKAAATASPAEPGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE 116
Query: 71 MPEKDIIA-------------------------------WNSMLDAFASCGQMDHAMKLI 99
MP++++I+ W +++ FA G M A +
Sbjct: 117 MPDRNVISYNALLAGYAAAGDMDGALALFGGMRSWTYVTWATLIRGFAKKGDMAEARRWF 176
Query: 100 DLMP--LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
+ P ++ V ++ +++ GY G + +AR +FD++PA++ W+S++ Y AG E+A
Sbjct: 177 ETTPPGMRTVVTWTVLVHGYVSAGDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEA 236
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
+F ++ +N++ WN ++ GY + + ++ FD M VKPD T+ S+LSACA L
Sbjct: 237 QAVFHRIPTRNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQL 296
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
GSLE G ++H + + N LIDMYAKCG + + +F + K+ CWN MI
Sbjct: 297 GSLEQGKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMI 356
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
LA HG AL L +M S + IT + +L AC+H G V EG +F++++ +GV
Sbjct: 357 SALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKLDA-YGV 415
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE----IGD 393
+EHYGC+VDLLGRA L A E+++ MP EP E I G+LL AC +H D E + D
Sbjct: 416 EAGVEHYGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGDAEMSRLVTD 475
Query: 394 RVAKM--VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
+ ++ V A SN D E +M +N+ A+ +WE+A + R M G+ KT S +E+
Sbjct: 476 EIHRLHSVHASSN---DAEYIMLSNIMAASKRWEQAEQIRRKMARHGVEKTPACSSLELG 532
Query: 452 GSYHKFLAG 460
++ AG
Sbjct: 533 IPEYQVCAG 541
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 241/398 (60%), Gaps = 2/398 (0%)
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F++M EKDI++WN M+ + + ++D A K D MP ++V S+ MI GY + G + A+
Sbjct: 128 FDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQ 187
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGE-MFKKMLVKNVITWNTMVTGYLRSQLYI 186
+FD +P KD+ SWN ++ Y + G+ +F +M +KN++TW+TM+ GY R+ +
Sbjct: 188 VLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPL 247
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
+ ++LF+ K ++KPD + ++SAC+ LG ++ I L S+ T+LI
Sbjct: 248 KALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLI 307
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
DMYAKCGSIE++L++F + KD+ C++ MI LA HG G A+ L +M + +K D +
Sbjct: 308 DMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSV 367
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
TF+G+L+AC+H GLV EG + F +M ++FG+ +HY C+VDLLGR L+ A LI
Sbjct: 368 TFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRN 427
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426
MP P + GALL+AC +H ++++ + VA K + G ++ +N+YA+ G+W
Sbjct: 428 MPIAPHSVVWGALLAACRVHCNVQLAE-VAAAELFKIEPDNSGNYILLSNIYAAAGRWGS 486
Query: 427 ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R + + + K GSS IE++ H+F+ G + H
Sbjct: 487 VAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMSH 524
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 133/315 (42%), Gaps = 26/315 (8%)
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
IH AR + + A N L+ Y+ G + A ++F ++ N W +++ GY+ +
Sbjct: 21 IH-ARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVEN 79
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
+ Y E LF +M+ + T++SVL A A L + G ++ +A D + +
Sbjct: 80 RQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEKDIVSW 139
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
+I Y ++ + + F + ++V W +MI G G A L DS
Sbjct: 140 NMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLF----DSMPV 195
Query: 303 ADDITFIGLLSACSHAGLVQEGCE-LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
D ++ ++S G G LF +M + L + M+ R +A+
Sbjct: 196 KDLASWNVMVSGYMDIGDYTNGARCLFDQMP-----MKNLVTWSTMIGGYARNGQPLKAL 250
Query: 362 ELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD---GELMMFA 415
EL E +P E+ + ++SAC L I D ++ NY+ +L +F
Sbjct: 251 ELFERFKEQDIKPDETFILGIISAC---SQLGIIDAAESII---HNYVGPSLLSDLRVFT 304
Query: 416 NL---YASCGQWEEA 427
+L YA CG E+A
Sbjct: 305 SLIDMYAKCGSIEKA 319
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 49/312 (15%)
Query: 94 HAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE 153
HA LI+ N ++ Y+R G A +FD++ + W SLI Y +
Sbjct: 22 HARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQ 81
Query: 154 MEKA---------------------------------------GEMFKKMLVKNVITWNT 174
++A G F +M K++++WN
Sbjct: 82 YDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEKDIVSWNM 141
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M++GY + FD M NV ++ TS++ G + +
Sbjct: 142 MISGYGNNDRVDIARKFFDRMPERNV----VSWTSMICGYVKAGDMAEAQVLFDSMPVKD 197
Query: 235 LASNPHATTALIDMYAKCGSIEQSLE-VFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
LAS ++ Y G +F + +K++ W+ MI G A +G AL+L
Sbjct: 198 LAS----WNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELF 253
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
+ +K D+ +G++SACS G++ + E + L + ++D+ +
Sbjct: 254 ERFKEQDIKPDETFILGIISACSQLGII-DAAESIIHNYVGPSLLSDLRVFTSLIDMYAK 312
Query: 354 ARLLDRAIELIE 365
+++A+++ E
Sbjct: 313 CGSIEKALQMFE 324
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 165/508 (32%), Positives = 286/508 (56%), Gaps = 47/508 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ G++ DN++ P + KA G L G +HG +K+GF V +++ MYG+L
Sbjct: 107 LRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGF--DACVCNSVMGMYGALGK 164
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------------------ 102
++ A KVF+++PE+D+++WN ++ ++ + + A+ + M
Sbjct: 165 MEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLS 224
Query: 103 --------------------PLKDVTSF-NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
L+ T N ++ Y + G + AR IFD++ K+V+ W
Sbjct: 225 ACSVLRNQEVGEEIHRYVDAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICW 284
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ Y + G +++A E+F++ V++++ W M+ GY++ L+ E + LF +M+ ++
Sbjct: 285 TSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLR 344
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD + ++L CA G+LE G +H Y +N + + TAL+D+YAKCG +E++LEV
Sbjct: 345 PDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEV 404
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
FY+ + +D W ++I GLA++G AL +M ++ + DDITFIG+L+AC+H GLV
Sbjct: 405 FYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTACNHGGLV 464
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG---A 378
+EG F M K + + K EHY C++DLL RA LLD A L+E +P E ++ ++ +
Sbjct: 465 EEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEMIPIESSDIVVPLYCS 524
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDT 437
LLSAC + +L++ +RV + + + + D + + A++YAS +WE+ R M +
Sbjct: 525 LLSACRNYGNLKMSERVGRRL--ERVEVKDSSVHTLLASVYASANRWEDVTTVRRKMKEL 582
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
GI K G S IEVNG H+F+ GG H+
Sbjct: 583 GIRKFPGCSSIEVNGVLHEFMVGGPSHM 610
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++ +N M+ + + + +V+ LF E++ + PD T+ V A LG + G ++H
Sbjct: 81 LVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHG 140
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y +G + +++ MY G +E + +VF + +DV WN +I H
Sbjct: 141 YVVKSGF--DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFED 198
Query: 289 ALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
A+ + M +S +KAD+ T + LSACS + G E+ ++ + +T K+ + +
Sbjct: 199 AIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGN--AL 256
Query: 348 VDLLGRARLLDRAIELIEAM 367
+D+ + +D+A + + M
Sbjct: 257 LDMYCKCGCVDKARAIFDEM 276
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 178/467 (38%), Positives = 246/467 (52%), Gaps = 64/467 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR- 59
+Q G+ D+YSFP LKA SS G LH Q+I+ G ++V TA ++MY S
Sbjct: 69 IQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGS 128
Query: 60 -CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
CI DA K+F+ M M DV +N M++GYA
Sbjct: 129 GCICDARKMFDGMS-----------------------------MSTGDVALWNAMLNGYA 159
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ G + +AR +F+++P ++V+SW +LI Y A A +F++M ++
Sbjct: 160 KHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLE----------- 208
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LAS 237
NV+PD + + L+ACA LG+LE G I Y G L +
Sbjct: 209 --------------------NVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTT 248
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
N ALIDMYAK G I+ +L+VF K + W MI GLALHG G AL++ M
Sbjct: 249 NIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRME 308
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ VK +DITFI +LSACSH GLVQ G F+RM +G+ K+EHYGCM+DLLGRA L
Sbjct: 309 RARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHL 368
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
A L+ MPFEP I G+LL+AC H D E+G+ +A + + G + +N+
Sbjct: 369 KEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGE-LALQHLLELEPDNSGNYALLSNI 427
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YAS G+W E+ R +M D G+ K G S+IEVN H+F+AG I H
Sbjct: 428 YASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVHEFIAGEISH 474
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
L++ ++ ++PD + L A S++TG ++H + GL S+ H TA + MY+
Sbjct: 65 LYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYS 124
Query: 251 KCGS--IEQSLEVF--YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
GS I + ++F DV WNAM+ G A HG A L M V I
Sbjct: 125 SFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNV----I 180
Query: 307 TFIGLLSACSHAGLVQEGCELFSRME 332
++ L++ + A + LF RM+
Sbjct: 181 SWTALITGYAQANRPHDAIALFRRMQ 206
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 222/360 (61%), Gaps = 1/360 (0%)
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
KDV N ++ YA G +A IF ++ DVVSW S+I + G++E A ++F +M
Sbjct: 152 KDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQM 211
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
KN++TW+TM++GY ++ + + V+LF +++ V+ + + SV+S+CA+LG+LE G
Sbjct: 212 PEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGE 271
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
R H Y NG+ N TAL+DMYA+CGSI++++ VF +D W A+I GLA+HG
Sbjct: 272 RAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHG 331
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
Y +LK M ++ + DITF +LSACSH GLV+ G ++F M++D V +LEHY
Sbjct: 332 YSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHY 391
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
GCMVDLLGRA L+ A + MP +P + GALL AC IH++ EIG+RV K++
Sbjct: 392 GCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLP 451
Query: 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G ++ +N+YA+ +WE+ R MM G+ K G S+IE++G HKF G H
Sbjct: 452 QHS-GYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSH 510
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 143/323 (44%), Gaps = 41/323 (12%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
Q G+ DN +FP L+K+ L +G HG IK GF VYVQ +L+ MY +
Sbjct: 111 QRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDT 170
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
+ A +F++M D+++W SM+ F CG ++ A KL D MP K++ +++ MISGYA+
Sbjct: 171 EAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNN 230
Query: 122 KIHSARYIFDKVP-----------------------------AKDVVSWNSLIL------ 146
A +F + A D V N + L
Sbjct: 231 HFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGT 290
Query: 147 ----AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
Y G ++KA +F+ + ++ ++W ++ G + F M + P
Sbjct: 291 ALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTP 350
Query: 203 DYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
+T T+VLSAC++ G +E G +I D+ + ++D+ + G +E++
Sbjct: 351 RDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERF 410
Query: 262 FYKSQVK-DVFCWNAMILGLALH 283
K VK + W A++ +H
Sbjct: 411 VLKMPVKPNAPVWGALLGACRIH 433
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 115/264 (43%), Gaps = 33/264 (12%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
++ A +F ++ N+ +N M+ G+ S+ + + + + + PD LT ++ +
Sbjct: 69 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
C L + G++ H + +G + + +L+ MYA G E + +F + DV W
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188
Query: 274 NAMILGLALHG------------------------YGYA-------ALKLLGEMNDSCVK 302
+MI G G GYA A++L + V+
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
A++ + ++S+C+H G ++ G + K+ G+T L +VD+ R +D+A+
Sbjct: 249 ANETVMVSVISSCAHLGALELGERAHDYVVKN-GMTLNLILGTALVDMYARCGSIDKAVW 307
Query: 363 LIEAMPFEPTESILGALLSACVIH 386
+ E +P T S AL++ +H
Sbjct: 308 VFEDLPERDTLS-WTALIAGLAMH 330
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 12/187 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q GV A+ ++ + L + +G H +K G ++ + TAL+ MY
Sbjct: 242 LQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGS 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
ID A VFE +PE+D ++W +++ A G + ++K M +D+T F ++S
Sbjct: 302 IDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDIT-FTAVLS 360
Query: 116 GYARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
+ G + IF+ + V + ++ AG++E+A KM VK N
Sbjct: 361 ACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNA 420
Query: 170 ITWNTMV 176
W ++
Sbjct: 421 PVWGALL 427
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 170/494 (34%), Positives = 275/494 (55%), Gaps = 47/494 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ G+ AD+Y++P +L+A G + S G +H +KTGF Y +L++MY L
Sbjct: 37 LRARGLAADSYTYPFVLRAIGTMKLSVEGRKVHAAAVKTGFRWDAYTACSLMEMYTMLGR 96
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI--------------------- 99
D A +VF++MP++ ++ WN M+ + CG+ A+ L
Sbjct: 97 ADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTA 156
Query: 100 -----DLMPLKDVTSF------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
DL + + S+ N ++ Y + G + A +F+++P ++++SW
Sbjct: 157 CSRAGDLNLGRRIHSYMDGVFGFSLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWT 216
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
L+ Y AG+++KA F + K++I W +M+ ++ + E + LF +M+ V+P
Sbjct: 217 ILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEP 276
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D TV ++L+ CAN+G+L+ G IH YA + + TALI+MY+KCG +++SL++F
Sbjct: 277 DKFTVVTLLTCCANIGALDQGEWIHQYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIF 336
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ Q KD W A+I GLA +G AL+L EM S K D ITFIG+LSAC H GLV
Sbjct: 337 GRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVLSACCHGGLVD 396
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF-EPTESILGALLS 381
EG F M++ + + ++EHY C+V+LLG A LL A +LI MP T + GALL+
Sbjct: 397 EGQRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLLYEAEKLITDMPVNNDTMPLFGALLT 456
Query: 382 ACVIHQDLEIGD----RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
AC + ++E+ + R+AK C+ + D ++M +N+YA+ +WEEA R R+ M +
Sbjct: 457 ACKANGNVEMSEWLTKRIAKEDCSPN---PDVNVLM-SNVYATASRWEEAIRVRSKMTNP 512
Query: 438 GIVKTAGSSVIEVN 451
+ KTAG S+IEV
Sbjct: 513 AVKKTAGCSMIEVK 526
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 2/196 (1%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ R + V+ ++ +++A + D T VL A + G ++H A
Sbjct: 15 NVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEGRKVHAAAVK 74
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + + +L++MY G + + VF + + + WN M+ G AA+ L
Sbjct: 75 TGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVAL 134
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M D +T + ++ACS AG + G + S M+ FG + L ++D+
Sbjct: 135 AVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFS--LPVANALLDMYT 192
Query: 353 RARLLDRAIELIEAMP 368
+ L+ A+++ E MP
Sbjct: 193 KNGYLEEAVKMFEQMP 208
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 166/478 (34%), Positives = 264/478 (55%), Gaps = 49/478 (10%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRC-IDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
+H Q IKTG + +L S I+ A+ VF ++ ++ WN+++ F+
Sbjct: 15 IHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSS 74
Query: 91 QMDHAMKL-IDLMPLKDVT-----SFNIMISGYARIGKIHS------------------- 125
+A+ L ID+M T ++ + YA++G H
Sbjct: 75 TPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFI 134
Query: 126 ----------------ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
A+ IFD DVV+WN++I+ GE++K+ +F KML++N
Sbjct: 135 QNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNT 194
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++WN+M++GY+R + E ++LF M+ +KP T+ S+L+ACA LG+L G IH Y
Sbjct: 195 VSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDY 254
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
N A N TA+IDMY+KCGSI+++L+VF + K + CWN++ILGLA+ G G A
Sbjct: 255 IVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEA 314
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
++L ++ S +K D ++FIG+L+AC+HAG+V + F M + + + ++HY CMVD
Sbjct: 315 VRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVD 374
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
+LGRA LL+ A ELI++MP P I G+LLS+C + ++E+ + AK V N L
Sbjct: 375 VLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRV----NELDPN 430
Query: 410 E---LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
E ++ +N+YA+ +EEA R + + + K G S+IEVNG H+F+AGG H
Sbjct: 431 ESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRLH 488
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 148/307 (48%), Gaps = 41/307 (13%)
Query: 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM 71
++P + KA L + G LHG+ IK G ++Q +L MY + + +A ++F+
Sbjct: 99 TYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGA 158
Query: 72 PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD 131
D++ WN+M+ A CG++D + +L D M L++ S+N MISGY R G+ A +F
Sbjct: 159 TGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFS 218
Query: 132 KV------PA----------------------------KDVVSWNSLILA-----YTNAG 152
++ P+ K+ + NS+++ Y+ G
Sbjct: 219 RMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCG 278
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
++KA ++FK K + WN+++ G S E V LF ++++ N+KPD+++ VL+
Sbjct: 279 SIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLT 338
Query: 213 ACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DV 270
AC + G ++ + ++ + + + ++D+ + G +E++ E+ V D
Sbjct: 339 ACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDA 398
Query: 271 FCWNAMI 277
W +++
Sbjct: 399 IIWGSLL 405
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 117/268 (43%), Gaps = 42/268 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE G+ ++ LL A L + G +H +K F + V TA++ MY
Sbjct: 220 MQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGS 279
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A +VF+ P+K + WNS++ A G+ + A++L
Sbjct: 280 IDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRL---------------------F 318
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
K+ S+ D VS+ ++ A +AG +++A + F M + ++ ++ M
Sbjct: 319 SKLESSNL------KPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCM 372
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R+ L E +L M V PD + S+LS+C G++E + A
Sbjct: 373 VDVLGRAGLLEEAEELIKSMP---VNPDAIIWGSLLSSCREYGNIEMAKQ----AAKRVN 425
Query: 236 ASNPHATTALI---DMYAKCGSIEQSLE 260
+P+ +++ I ++YA E+++E
Sbjct: 426 ELDPNESSSFILLSNVYAAHNHFEEAIE 453
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/442 (34%), Positives = 259/442 (58%), Gaps = 2/442 (0%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+D Y++PLL+K G ++HG I+ G VYV ++L+ YG + I A KV
Sbjct: 103 SDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKV 162
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F+++PE+++++W +M+ +AS G +++A ++ + MP +++ S+N MISG + G + AR
Sbjct: 163 FDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGAR 222
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD++ ++VVS+ +I Y G+M A +F + K+V+ W+ +++GY R++ E
Sbjct: 223 KVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNE 282
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL-ASNPHATTALI 246
V +F EM + NVKPD + S++SAC+ LG+ + + Y + + H ALI
Sbjct: 283 AVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALI 342
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
DM+AKCG++E+++++F +D+ ++I GL++HG G A++L M D + D +
Sbjct: 343 DMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTV 402
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
F +L+ACS GL+++G F M+ + V HY CMVDLL RA L A +L+++
Sbjct: 403 AFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKS 462
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426
MP +P GALL AC +H D+E+ + VA + + G ++ +N+YAS QW +
Sbjct: 463 MPLKPHACAWGALLGACKLHGDVELREEVANRLLELEPEKA-GSYVLLSNIYASANQWLD 521
Query: 427 ANRWRNMMNDTGIVKTAGSSVI 448
+ R+ M + GI K G S I
Sbjct: 522 VSIVRDEMKERGIRKIPGCSYI 543
>gi|334185512|ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g21470
gi|11994382|dbj|BAB02341.1| unnamed protein product [Arabidopsis thaliana]
gi|332642992|gb|AEE76513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 159/471 (33%), Positives = 262/471 (55%), Gaps = 39/471 (8%)
Query: 14 PLLLKA-AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
PL+L+A A ++ +G +LH ++IK G C V V ++L+ MYG C+ A KVF++MP
Sbjct: 49 PLILRACACVVPRVVLGKLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMP 108
Query: 73 EKDIIAWNSMLDAFASCG--------------------------------QMDHAMKLID 100
E+++ WN+M+ + S G +++ A +L +
Sbjct: 109 ERNVATWNAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIEKARELFE 168
Query: 101 LMP--LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAG 158
MP LK+V ++++M+ Y K+ AR F+ +P K+ W+ ++ Y G++ +A
Sbjct: 169 RMPFELKNVKAWSVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEAR 228
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+F ++ ++++ WNT++ GY ++ + +D F M+ +PD +TV+S+LSACA G
Sbjct: 229 AIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSG 288
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
L+ G +H G+ N + ALIDMYAKCG +E + VF V+ V C N+MI
Sbjct: 289 RLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMIS 348
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
LA+HG G AL++ M +K D+ITFI +L+AC H G + EG ++FS M K V
Sbjct: 349 CLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEM-KTQDVK 407
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
++H+GC++ LLGR+ L A L++ M +P +++LGALL AC +H D E+ ++V K+
Sbjct: 408 PNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPNDTVLGALLGACKVHMDTEMAEQVMKI 467
Query: 399 V---CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
+ + +N S+ L +NLYA +W+ A R M G+ K+ G S
Sbjct: 468 IETAGSITNSYSENHLASISNLYAHTERWQTAEALRVEMEKRGLEKSPGLS 518
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 16/253 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D + +L A +G +H G + +V AL+ MY
Sbjct: 265 MQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGD 324
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------IDLMPLKDVTSFNIMI 114
+++A VFE + + + NSM+ A G+ A+++ +DL P D +F ++
Sbjct: 325 LENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKP--DEITFIAVL 382
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ G + IF ++ +DV + LI +G++++A + K+M VK
Sbjct: 383 TACVHGGFLMEGLKIFSEMKTQDVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPND 442
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLT--VTSVLSACANLGSLETGARI 226
T + G + + E+ + ++ AG++ Y + S+ + A+ +T +
Sbjct: 443 TVLGALLGACKVHMDTEMAEQVMKIIETAGSITNSYSENHLASISNLYAHTERWQTAEAL 502
Query: 227 HVYATDNGLASNP 239
V GL +P
Sbjct: 503 RVEMEKRGLEKSP 515
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 165/455 (36%), Positives = 258/455 (56%), Gaps = 40/455 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ GV D Y+F +LKA L G +HG+ ++ GF + YV+ AL+ +
Sbjct: 103 MEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALILFH----- 157
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A+CG + A +L D +++ M SGYA+
Sbjct: 158 --------------------------ANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKR 191
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GKI A +FD++P KD V+WN +I EM+ A E+F + K+V+TWN M++GY+
Sbjct: 192 GKIDEAMRLFDEMPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYV 251
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LASNP 239
E + +F EM+ PD +T+ S+LSACA LG LETG R+H+Y + ++S+
Sbjct: 252 NCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSI 311
Query: 240 HATT----ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ T ALIDMYAKCGSI++++EVF + +D+ WN +I+GLALH + ++++ E
Sbjct: 312 YVGTPIWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEE 370
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M V +++TFIG++ ACSH+G V EG + FS M + + ++HYGCMVD+LGRA
Sbjct: 371 MQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAG 430
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGELMMF 414
LL+ A +E+M EP + LL AC I+ ++E+G K++ + + G+ ++
Sbjct: 431 LLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD--ESGDYVLL 488
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+N+YAS GQW+ + R M +DT + K G S+IE
Sbjct: 489 SNIYASTGQWDGVQKVRKMFDDTRVKKPTGISLIE 523
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 17/285 (5%)
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
G ++ A ++F+++ +V N ++ G +S + V L+ EM+ V PD T T V
Sbjct: 59 PGALKYAHKLFEEIPKPDVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFV 118
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
L AC+ L G IH +G N + ALI +A CG + + E+F S
Sbjct: 119 LKACSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELFDDSAKAHK 178
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
W++M G A G A++L EM D D + + +++ C + ELF R
Sbjct: 179 VAWSSMTSGYAKRGKIDEAMRLFDEMPDK----DQVAWNVMITGCLKCREMDSARELFDR 234
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQ 387
+ VT + M+ A+ + + M P + +LLSAC +
Sbjct: 235 FTEKDVVT-----WNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLG 289
Query: 388 DLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEA 427
DLE G R+ + + S Y+ ++YA CG + A
Sbjct: 290 DLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRA 334
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 159/449 (35%), Positives = 257/449 (57%), Gaps = 17/449 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ D +++P L+KA + G+ HG ++ G G V+V T+L+ +YG
Sbjct: 114 MKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGE 173
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A KVF++M E+++++W +M+ +AS + A KL D MP K+ S+N +ISGY +
Sbjct: 174 ILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKC 233
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + SAR +FD++P ++VVS+ ++I Y +G+M A +F++ ++V+ W+ ++
Sbjct: 234 GDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALI---- 289
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL-ASNP 239
F NVKPD + S++SAC+ +GSLE + Y + +
Sbjct: 290 -----------FRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRA 338
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
H ALIDM AKCGS++++ ++F + +D+ + +M+ GL++HG G A+ L M +
Sbjct: 339 HVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNE 398
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ DD+ F +L+ACS AGLV EGC F M+ D+ + +HY CMVDLLGRA L
Sbjct: 399 GLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKE 458
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A EL+++MP EP GALL AC +H D+E+G+ VA + + + G ++ +N+YA
Sbjct: 459 AYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQL-FELEPQNAGNYVLLSNIYA 517
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+ QW + + RN M + GI K G S I
Sbjct: 518 AAEQWLDVSLLRNKMRERGIRKIPGCSWI 546
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 29/290 (10%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F + + + WNT + GY + V LF MK + PD T S++ AC+ +
Sbjct: 79 VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 138
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
++ G H A G+ + T+LID+Y KCG I + +VF + ++V W AMI G
Sbjct: 139 VKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAG 198
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
A A KL EM + + +++ ++S G ++ ++F M R
Sbjct: 199 YASFSDLVEARKLFDEMPEK----NAVSWNAIISGYVKCGDLRSARKMFDEMPH-----R 249
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMP-------------------FEPTESILGALL 380
+ + M+D ++ + A + E P +P E I+ +L+
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLM 309
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANR 429
SAC LE+ V V S + ++ ++ A CG + A +
Sbjct: 310 SACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATK 359
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 164/504 (32%), Positives = 266/504 (52%), Gaps = 41/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G D Y+FP LLKA SS+ +H +K G + +V T+L+ Y +
Sbjct: 34 MLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGD 93
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-KLIDL-------MP--------- 103
A + + + WN+++ C + A +D+ P
Sbjct: 94 GAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSA 153
Query: 104 -----------------------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
L D+ N ++ YA + SA +FD + + VVS
Sbjct: 154 CGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVS 213
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
W SL+ T G +++A ++F +M ++ ++W M+ GY+++ + E +++F EM+ NV
Sbjct: 214 WTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNV 273
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
D T+ SV++ACA LG+LE G + VY + G+ + ALIDMY+KCGSIE++L+
Sbjct: 274 SADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALD 333
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF +D F W A+ILGLA++GYG A+++ M D++TFIG+L+AC+HAGL
Sbjct: 334 VFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGL 393
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V +G E F M + + + + HYGC++DL GRA + A++ I+ MP P +I G LL
Sbjct: 394 VDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLL 453
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+AC +H + EIG+ V + + + + + + +N+YA C +WE+ R R+ + + GI
Sbjct: 454 AACRVHGNSEIGELVTERLL-QMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIK 512
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S+IE+NG H+F+AG H
Sbjct: 513 KEPGCSLIEMNGIIHEFVAGDQSH 536
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 4/178 (2%)
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
+ M A PD T +L A A S +H + G+ N H T+L+ YA
Sbjct: 31 YARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAA 90
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGL-ALHGYGYAALKLLGEMNDSCVKADDITFIG 310
G + + + + WNA+I G +G A + +M + +T++
Sbjct: 91 GGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFV-DMARAGAAPTPVTYVS 149
Query: 311 LLSACSHA-GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+LSAC G V G ++ R+ GV L +VD+ ++ A +L + M
Sbjct: 150 VLSACGKGTGDVLLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMESAWKLFDGM 206
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 167/438 (38%), Positives = 246/438 (56%), Gaps = 41/438 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ + Y+FP LLK+ + G +HG +K G+ +YV T+L+ MY
Sbjct: 79 MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGR 138
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF++ +D++++ +++ +AS G +++A KL D +P+KDV S+N MISGYA
Sbjct: 139 LEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 198
Query: 121 GKIHSARYIF----------DKVPAKDVVS----------------W------------- 141
G A +F D+ VVS W
Sbjct: 199 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV 258
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GE+E A +F+ + K+VI+WNT++ GY LY E + LF EM
Sbjct: 259 NALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 318
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA+LG+++ G IHVY G+ + T+LIDMYAKCG IE +
Sbjct: 319 PNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAK 378
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF + + WNAMI G A+HG AA L +M + + DDITF+GLLSACSH+G
Sbjct: 379 QVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSG 438
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M +D+ +T KLEHYGCM+DLLG L A E+I MP EP I +L
Sbjct: 439 MLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSL 498
Query: 380 LSACVIHQDLEIGDRVAK 397
L AC +H ++E+G+ A+
Sbjct: 499 LKACKMHNNVELGESYAQ 516
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 32/245 (13%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F+ + N++ WNTM G+ S + + L+ M + + P+ T +L +CA
Sbjct: 41 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 100
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ---------- 266
+ G +IH + G + + T+LI MY + G +E + +VF +S
Sbjct: 101 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 160
Query: 267 ---------------------VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
VKDV WNAMI G A G AL+L +M + V+ D+
Sbjct: 161 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 220
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
T + ++SAC+ +G ++ G ++ ++ D G L+ ++DL + ++ A L E
Sbjct: 221 STMVTVVSACAQSGSIELGRQVHLWID-DHGFGSNLKIVNALIDLYSKCGEVETACGLFE 279
Query: 366 AMPFE 370
+ ++
Sbjct: 280 GLSYK 284
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/472 (35%), Positives = 262/472 (55%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE G D+ + +L A L + IG +HG + GF V V TA+L Y
Sbjct: 234 MQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGS 293
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
+ A VF+ M +++++WN+M+D +A G+ + A M + V N+ + G
Sbjct: 294 VRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHA 353
Query: 118 -ARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + RY+ + K DV NSLI Y+ ++ A +F + K V+TW
Sbjct: 354 CANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTW 413
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY ++ E ++LF EM++ ++KPD T+ SV++A A+L IH A
Sbjct: 414 NAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIR 473
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ N TALID +AKCG+I+ + ++F Q + V WNAMI G +G+G AL L
Sbjct: 474 TLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDL 533
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM + VK ++ITF+ +++ACSH+GLV+EG F M++++G+ ++HYG MVDLLG
Sbjct: 534 FNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLG 593
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LD A + I+ MP +P ++LGA+L AC IH+++E+G++ A + + G +
Sbjct: 594 RAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELF-DLDPDDGGYHV 652
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YAS W++ R R M GI KT G S++E+ H F +G H
Sbjct: 653 LLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNH 704
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 163/353 (46%), Gaps = 70/353 (19%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y F LL+ +G G +HG I GF +++ TA++ +Y R I+DA+K+FE+
Sbjct: 143 YDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFER 202
Query: 71 MPEKDIIAWNSMLDAFAS----------------CGQMDHAMKLIDLMP-LKDVTSFNI- 112
MP++D+++WN+++ +A GQ ++ L+ ++P + D+ + I
Sbjct: 203 MPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIG 262
Query: 113 ---------------------MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
M+ Y + G + SAR +F + +++VVSWN++I Y
Sbjct: 263 RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
GE E+A F KML DE V+P +++ L
Sbjct: 323 GESEEAFATFLKML---------------------------DE----GVEPTNVSMMGAL 351
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
ACANLG LE G +H + + + +LI MY+KC ++ + VF + K V
Sbjct: 352 HACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVV 411
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
WNAMILG A +G AL L EM +K D T + +++A + + ++
Sbjct: 412 TWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQA 464
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 150/298 (50%), Gaps = 12/298 (4%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA- 95
IK GF QT L+ ++ I +A +VFE + K + +++ML +A + A
Sbjct: 68 IKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAV 127
Query: 96 -----MKLIDLMPLKDVTSFNIMISG----YARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
M+ ++MP+ ++ + +SG R +IH + ++ + +++
Sbjct: 128 RFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGM--VITNGFQSNLFAMTAVVN 185
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y ++E A +MF++M +++++WNT+V GY ++ V + +M+ KPD +T
Sbjct: 186 LYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSIT 245
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ SVL A A+L +L G IH YA G + TA++D Y KCGS+ + VF
Sbjct: 246 LVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS 305
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
++V WN MI G A +G A +M D V+ +++ +G L AC++ G ++ G
Sbjct: 306 SRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG 363
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/478 (34%), Positives = 255/478 (53%), Gaps = 43/478 (8%)
Query: 29 GLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
G +H +K GF G V V AL+ Y + + +DDA KVF++MPE+D+++W +++D +A
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220
Query: 88 SCGQMDHAMKLIDLMPL----------------------------------------KDV 107
G D A +L M + + V
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSV 280
Query: 108 TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
N ++ + + G + AR +FD + KDV SW S++ AY G++E A ++FK M +
Sbjct: 281 NLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRR 340
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
NV++W+ M+ Y + E V LF EM A V P T+ SVLSACA LG L+ G I+
Sbjct: 341 NVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIY 400
Query: 228 V-YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
Y N + + ALIDM+AKCG + ++ ++F + ++V WN MI+ A+HG
Sbjct: 401 ENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQS 460
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A++L ++ + D ITF+GLL++CSH+GLV EG F ME + + ++EHY C
Sbjct: 461 EEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYAC 520
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
M+DLLG+ LL+ A E+ MP E E+ GALL+AC +H ++EIG VA + + +
Sbjct: 521 MIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKL-VELDPS 579
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ + +YAS +W++ R M D G+ K G S IEV G +H FL + H
Sbjct: 580 DSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVSH 637
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 152/323 (47%), Gaps = 44/323 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + + + A G + G+MLH + G V + AL+ M+G C+ A
Sbjct: 240 GMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYA 299
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+VF+ M KD+ +W SM++A+A CG ++ A +L MP ++V S++ MI+ Y+++ +
Sbjct: 300 REVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPE 359
Query: 125 SARYIFDKVPAK----------------------DVVSW------------------NSL 144
A ++F ++ A D+ W N+L
Sbjct: 360 EAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNAL 419
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I + G++ +A ++F +M +NV++WNTM+ + E + LF+++K N+ PD
Sbjct: 420 IDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQ 479
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVF 262
+T +L++C++ G + G R + + P +ID+ K G +E++ EV
Sbjct: 480 ITFLGLLASCSHSGLVSEGRR-YFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVA 538
Query: 263 YKSQVK-DVFCWNAMILGLALHG 284
++ D W A++ +HG
Sbjct: 539 RGMPMEADEAGWGALLNACRMHG 561
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 9/209 (4%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL------GSL 220
N TM+ G+LR++L + LF + + D T + A A G+
Sbjct: 99 PNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTP 158
Query: 221 ETGARIHVYATDNG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
G IH A G + + AL+ YA S++ + +VF + +DV W ++ G
Sbjct: 159 SGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDG 218
Query: 280 LALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
A G A +L M ++ + +T + +SA GL+ G + + + GV
Sbjct: 219 YARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGI-MLHKYVTEGGVA 277
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAM 367
R + +VD+ G+ + A E+ + M
Sbjct: 278 RSVNLDNALVDMFGKCGCVRYAREVFDGM 306
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 258/474 (54%), Gaps = 13/474 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + Y++P +L+ L + +G +H Q IK+GF +VYV + L+ MY
Sbjct: 406 MQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGE 465
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+D A + +++ E+D+++W +M+ + A+KL M + + S NI IS
Sbjct: 466 LDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISA 525
Query: 117 YARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A I +IH+ YI ++D+ N+L+ Y G + A F+K+ K+ I
Sbjct: 526 CAGIQALNQGQQIHAQSYISGY--SEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNI 583
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN +++G+ +S E + +F +M V+ + T S +SA AN +++ G +IH
Sbjct: 584 SWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMM 643
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G S A+ LI +Y+KCGSIE + F++ K+V WNAMI G + HGYG A+
Sbjct: 644 IKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAV 703
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L EM + + +TF+G+LSACSH GLV EG F M K+ G+ K EHY C+VDL
Sbjct: 704 SLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDL 763
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA LL A E IE MP EP I LLSAC +H+++EIG+ A+ + S
Sbjct: 764 LGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDS-AT 822
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA G+W+ +R R MM D G+ K G S IEV S H F G H
Sbjct: 823 YVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLH 876
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 127/485 (26%), Positives = 215/485 (44%), Gaps = 49/485 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V Y F +L A + +G LHG +K G +V AL+ +Y
Sbjct: 204 MHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGN 263
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
+ A ++F KM +D I++NS++ A G D A++L + M L D + ++S
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323
Query: 117 YARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A +G ++HS Y+ + D++ SL+ Y ++E A E F +NV+
Sbjct: 324 CASVGAGYKGKQLHS--YVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M+ Y + E +F +M+ + P+ T S+L C +LG+L+ G +IH
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV 441
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G N + + LIDMYAK G ++ + + + + +DV W AMI G H AL
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEAL 501
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
KL EM + +++D+I F +SAC+ + +G ++ ++ G + L +V L
Sbjct: 502 KLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYIS-GYSEDLSIGNALVSL 560
Query: 351 L---GRARLLDRAIELIEAMP-------------------------------FEPTESIL 376
GRA+ A E I+A E
Sbjct: 561 YARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTF 620
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMN 435
G+ +SA +++ G ++ M+ K+ Y S+ E + LY+ CG E+A R M
Sbjct: 621 GSAVSATANTANIKQGKQIHAMMI-KTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP 679
Query: 436 DTGIV 440
+ +V
Sbjct: 680 EKNVV 684
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 178/359 (49%), Gaps = 10/359 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G+ A+ ++ L + S LH + K+GF G + + L+ +Y +
Sbjct: 1 MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D+A K+F+ +P ++ WN ++ + + L LM ++VT + R
Sbjct: 61 VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120
Query: 121 GKIHSARY-IFDKVPAKDV--------VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
A + + +++ AK + + N LI Y+ G ++ A +F+++ +K+ ++
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W M++G ++ E + LF +M V P +SVLSAC + + G ++H +
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
GL+S AL+ +Y++ G++ + ++F K +D +N++I GLA G+ AL+
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M C+K D +T LLSAC+ G +G +L S + K G++ L G ++DL
Sbjct: 301 LFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIK-MGMSSDLIIEGSLLDL 358
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/419 (38%), Positives = 241/419 (57%), Gaps = 3/419 (0%)
Query: 48 QTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV 107
Q L M + I A KVF +M EK+++ W SM++ + + A + DL P +D+
Sbjct: 31 QMFLFGMLCLMGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDI 90
Query: 108 TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
+N MISGY +G + AR +FD++P +DV+SWN+++ Y N G+ME +F M +
Sbjct: 91 VLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPER 150
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARI 226
NV +WN ++ GY ++ EV+ F M G+V P+ T+T VLSACA LG+ + G +
Sbjct: 151 NVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWV 210
Query: 227 HVYATDNGLAS-NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
H Y G + + ALIDMY KCG+IE ++EVF + +D+ WN MI GLA HG+
Sbjct: 211 HKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGH 270
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
G AL L EM +S + D +TF+G+L AC H GLV++G F+ M DF + ++EH G
Sbjct: 271 GTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCG 330
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
C+VDLL RA L +A+E I MP + I LL A +++ ++IG+ VA K
Sbjct: 331 CVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGE-VALEELIKLEP 389
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +M +N+Y G++++A R + M DTG K AG S IE + KF + G H
Sbjct: 390 RNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKH 448
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 131/255 (51%), Gaps = 23/255 (9%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----K 97
C V +L+ Y ++ ++ +VF+ MPE+++ +WN ++ +A G++ + +
Sbjct: 118 CRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKR 177
Query: 98 LID---LMPLKDVTSFNIMISGYARIGKIHSARYI--------FDKVPAKDVVSWNSLIL 146
++D ++P D T +++S A++G +++ ++KV DV N+LI
Sbjct: 178 MVDEGSVVP-NDAT-MTLVLSACAKLGAFDFGKWVHKYGETLGYNKV---DVNVKNALID 232
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G +E A E+FK + +++I+WNTM+ G E ++LF EMK + PD +T
Sbjct: 233 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVT 292
Query: 207 VTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
VL AC ++G +E G A + TD + ++D+ ++ G + Q++E K
Sbjct: 293 FVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKM 352
Query: 266 QVK-DVFCWNAMILG 279
VK D W A +LG
Sbjct: 353 PVKADAVIW-ATLLG 366
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 20/250 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLR 59
+ E V ++ + L+L A L + G +H G+ V V+ AL+ MYG
Sbjct: 179 VDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCG 238
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY-- 117
I+ A +VF+ + +D+I+WN+M++ A+ G A+ L M ++ + G
Sbjct: 239 AIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLC 298
Query: 118 --ARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
+G + F+ + ++ ++ + AG + +A E KM VK +
Sbjct: 299 ACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADA 358
Query: 170 ITWNTMVTGYLRSQLYIEV----VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+ W T++ S++Y +V V L + +K P + S + A G + AR
Sbjct: 359 VIWATLLGA---SKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDA--GRFDDAAR 413
Query: 226 IHVYATDNGL 235
+ V D G
Sbjct: 414 LKVAMRDTGF 423
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/484 (35%), Positives = 262/484 (54%), Gaps = 41/484 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ DNY+FP ++++ +LS+ G +H +K GF V+VQ++L+ MY
Sbjct: 119 MHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGE 178
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFAS----------------CGQMDHAMKLIDLMPL 104
VF +M ++I++W +++ + G +A+ L+ ++P
Sbjct: 179 TLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPA 238
Query: 105 ---KDVTSFNIMISGYA-RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEM 160
+ + +I GY ++G DV N+LI Y G +E A +
Sbjct: 239 CAGLEFLNLGKLIHGYGIKLGV------------DPDVSLTNALIALYGKCGNVETARSL 286
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
F M+V+N+++WN M+ Y ++ V LF M+A V DY+T+ SV+SACA+LG+L
Sbjct: 287 FDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGAL 346
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
TG +H GL N T ALIDMYAKCG+I+ + EVF + + V W +MI
Sbjct: 347 NTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGAC 406
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
A HG+G ALKL M D VK + TF + +AC H+GLV+EG + F M +D+ +
Sbjct: 407 ASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPG 466
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC 400
+EH CMVDLLGRA L A E I+ MP EP S+ GALL +C IH +LE+ + VA+ +
Sbjct: 467 VEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKL- 525
Query: 401 AKSNYLSDGELMMF----ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHK 456
+L D + + F +N+YA G+WE+A R R +M + + K G S++EVN +H
Sbjct: 526 ----FLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVNRRFHT 581
Query: 457 FLAG 460
FL+G
Sbjct: 582 FLSG 585
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 189/392 (48%), Gaps = 17/392 (4%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
+D A K+F++MP++D+ WN+++ +A G + A+ L M D +F ++
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRS 137
Query: 117 YARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + + + + + DV +SL+ Y+ +GE +F +M+V+N+++W
Sbjct: 138 CAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSW 197
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++ GY++++ + E + +F EM +P+ +T+ SVL ACA L L G IH Y
Sbjct: 198 TAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIK 257
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G+ + T ALI +Y KCG++E + +F V+++ WNAMI + G A+KL
Sbjct: 258 LGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKL 317
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M V D IT + ++SAC+ G + G + K G+ + ++D+
Sbjct: 318 FRRMQAEKVDFDYITMVSVISACASLGALNTG-RWMHELVKRKGLEINVSITNALIDMYA 376
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
+ +D A E+ E +P S +++ AC H G+ K+ +
Sbjct: 377 KCGNIDLAREVFERLPCRSVVS-WTSMIGACASHGH---GEDALKLFSRMKDEGVKPNSF 432
Query: 413 MFANLYASC---GQWEEANR-WRNMMNDTGIV 440
FA ++ +C G EE + + +MM D I+
Sbjct: 433 TFAAVFTACRHSGLVEEGRKHFESMMRDYSIM 464
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 5/262 (1%)
Query: 109 SFNIMI---SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
SFN ++ S + +IH A + + ++S +I A A M+ A +MF +M
Sbjct: 31 SFNYLLNCCSSLPDLSRIH-ALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMP 89
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
++V WNT++ GY + E + L+ M + PD T V+ +CA L +L G
Sbjct: 90 KRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKE 149
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H +G S+ ++L+ MY++ G VF + V+++ W A+I G + Y
Sbjct: 150 VHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRY 209
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
L + EM S + + +T + +L AC+ + G +L GV +
Sbjct: 210 FKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG-KLIHGYGIKLGVDPDVSLTN 268
Query: 346 CMVDLLGRARLLDRAIELIEAM 367
++ L G+ ++ A L + M
Sbjct: 269 ALIALYGKCGNVETARSLFDGM 290
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 170/468 (36%), Positives = 251/468 (53%), Gaps = 11/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV ++FP LLKA L S H +K G +V+ +L+ Y S
Sbjct: 95 MRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGL 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-MISGYAR 119
D A ++F+ +KD++ W +M+D F G AM M V + + ++S
Sbjct: 154 FDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKA 213
Query: 120 IGKIHSAR--------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
GK+ R Y+ DV +SL+ Y + A ++F +M +NV+T
Sbjct: 214 AGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVT 273
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W ++ GY++S+ + + + +F+EM +V P+ T++SVLSACA++G+L G R+H Y
Sbjct: 274 WTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMI 333
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N + N A T LID+Y KCG +E+++ VF + K+V+ W AMI G A HGY A
Sbjct: 334 KNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFD 393
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L M S V +++TF+ +LSAC+H GLV+EG LF M+ F + K +HY CMVDL
Sbjct: 394 LFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLF 453
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GR LL+ A LIE MP EPT + GAL +C++H+D E+G A V K G
Sbjct: 454 GRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVI-KLQPSHSGRY 512
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ ANLY+ W+E R R M D +VK+ G S IEV G +F+A
Sbjct: 513 TLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIA 560
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 169/509 (33%), Positives = 263/509 (51%), Gaps = 47/509 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ + +F LL + + G +H + G V V AL+ MY C
Sbjct: 271 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNC 330
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCG-----QMDHAMKLIDLM------PLKDVTS 109
I DA + F++M ++D+I+W++M+ +A G +D +L++ M P K VT
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNK-VTF 389
Query: 110 FNIM----------------------------------ISGYARIGKIHSARYIFDKVPA 135
+I+ + YA+ G I+ A +F K+
Sbjct: 390 MSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMEN 449
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
K+VV+W SL+ Y G++ A ++F +M +NV++WN M+ GY +S +V +L M
Sbjct: 450 KNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSM 509
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
K +PD +T+ S+L AC L +LE G +H A GL S+ T+LI MY+KCG +
Sbjct: 510 KVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEV 569
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
++ VF K +D WNAM+ G HG G A+ L M V ++ITF ++SAC
Sbjct: 570 TEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISAC 629
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
AGLVQEG E+F M++DF + +HYGCMVDLLGRA L A E I+ MP EP S+
Sbjct: 630 GRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISV 689
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
ALL AC H ++++ + A + + + + +N+YA G+W+++ + R +M+
Sbjct: 690 WHALLGACKSHDNVQLAEWAAHHIL-RLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMD 748
Query: 436 DTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
D G+ K G S IE++G H F+A H
Sbjct: 749 DKGLKKDRGESSIEIDGRIHTFVAEDCAH 777
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 174/359 (48%), Gaps = 20/359 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ G+ ++ ++ +++ L G M+H Q + G +Y+ +L+ Y
Sbjct: 69 IKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGD 128
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-LKDVT------SFNIM 113
+ +VF +M +D++ W+SM+ A+A +H K D +KD +F +
Sbjct: 129 VASVEQVFRRMTLRDVVTWSSMIAAYAG---NNHPAKAFDTFERMKDANIEPNRITFLSI 185
Query: 114 ISGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ + AR I V A DV +LI Y+ GE+ A E+F+KM +NV
Sbjct: 186 LKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNV 245
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++W ++ + + E +L+++M + P+ +T S+L++C +L G RIH +
Sbjct: 246 VSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSH 305
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA- 288
++ GL ++ ALI MY KC I+ + E F + +DV W+AMI G A GY
Sbjct: 306 ISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKE 365
Query: 289 ----ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLE 342
+LL M V + +TF+ +L ACS G +++G ++ + + K F R L+
Sbjct: 366 SLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQ 424
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 185/401 (46%), Gaps = 48/401 (11%)
Query: 90 GQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGKIHSARYIFDKVP----AKDVVSW 141
G++ A++L+ ++ L + ++ +I A++ + + + ++ A D+
Sbjct: 57 GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSLI Y+ G++ ++F++M +++V+TW++M+ Y + + D F+ MK N++
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ +T S+L AC N LE IH +G+ ++ TALI MY+KCG I + E+
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEI 236
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K + ++V W A+I A H A +L +M + + + +TF+ LL++C+ +
Sbjct: 237 FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEAL 296
Query: 322 QEGCELFSR-----MEKDFGVTRKLEHYGCMVDLLGRAR--------------------- 355
G + S +E D V L C + + AR
Sbjct: 297 NRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGY 356
Query: 356 ---------LLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
LD +L+E M E P + ++L AC +H LE G ++ + +K
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI-SKV 415
Query: 404 NYLSDGELMM-FANLYASCGQWEEANRWRNMMNDTGIVKTA 443
+ SD L N+YA CG EA + + M + +V A
Sbjct: 416 GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWA 456
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 170/370 (45%), Gaps = 48/370 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ + + +F +LKA S +H +G V V TAL+ MY
Sbjct: 170 MKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGE 229
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
I A ++F+KM E+++++W +++ A A +++ A +L + M VT +++ S
Sbjct: 230 ISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNS 289
Query: 116 -----GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
R +IHS +I ++ DVV N+LI Y ++ A E F +M ++VI
Sbjct: 290 CNTPEALNRGRRIHS--HISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVI 347
Query: 171 TWNTMVTGYLRS-----QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+W+ M+ GY +S + EV L + M+ V P+ +T S+L AC+ G+LE G +
Sbjct: 348 SWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ 407
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ------------------- 266
IH + G S+ TA+ +MYAKCGSI ++ +VF K +
Sbjct: 408 IHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGD 467
Query: 267 ------------VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
++V WN MI G A G +LL M + D +T I +L A
Sbjct: 468 LTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEA 527
Query: 315 CSHAGLVQEG 324
C ++ G
Sbjct: 528 CGALSALERG 537
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/464 (34%), Positives = 252/464 (54%), Gaps = 27/464 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ D ++P +LK+ L S+ +G+ +H ++ G +V+ +L+ MY +
Sbjct: 170 MLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEK 229
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ AFKVF++ PE+ +++L +N++I G +
Sbjct: 230 LGSAFKVFDESPERFDSGSSALL--------------------------WNVLIKGCCKA 263
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A +F +P K+ VSW++LI + G+M++A E+F +M KNV++W TMV G+
Sbjct: 264 GSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFS 323
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R+ + + +F +M V+P+ T+ S LSACA +G LE G RIH Y DNGL
Sbjct: 324 RNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEA 383
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TAL+DMYAKCG+IE + EVF +++ K + W MI G A+HG+ A+ +M +
Sbjct: 384 LGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAG 443
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+K D++ F+ LL+AC H+G V G F M D+ + ++HY +VD+LGR+ L A
Sbjct: 444 IKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEA 503
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+ IE MP P I GAL AC H+ ++ + A K G + +N YA+
Sbjct: 504 LRFIERMPMNPDFVIWGALFCACRAHKKTKMA-KFALNKLLKLEPTHTGNYIFLSNAYAA 562
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
GQWE+A R R +M + G+ K +G S IEV G H+F++G H
Sbjct: 563 LGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDH 606
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 141/329 (42%), Gaps = 20/329 (6%)
Query: 110 FNIMISGYARIGKIHS--ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
F +I G I ++H A+ I + + +++ LI + + + + +F K
Sbjct: 84 FISLIHGSKTILQLHQIHAQIIIHNLSSSSLIT-TQLISSSSLRKSINHSLAVFNHHKPK 142
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N+ T+N ++ G + + + F M +KPD LT VL + A L S E G IH
Sbjct: 143 NLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIH 202
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-----DVFCWNAMILGLAL 282
G+ + +L+DMY K + + +VF +S + WN +I G
Sbjct: 203 CMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCK 262
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
G A+KL M K +++++ L+ + G + ELF +M + V+
Sbjct: 263 AGSMKKAVKLFKAMP----KKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVS---- 314
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMV 399
+ MVD R ++A+ + M E P + + LSAC LE G R+ K +
Sbjct: 315 -WTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYI 373
Query: 400 CAKSNYLSDGELMMFANLYASCGQWEEAN 428
+L++ ++YA CG E A+
Sbjct: 374 KDNGLHLTEALGTALVDMYAKCGNIESAS 402
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/466 (35%), Positives = 261/466 (56%), Gaps = 11/466 (2%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
AD ++ LK+ + + +G + +K G +V ++L+ MY S + A V
Sbjct: 118 ADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLV 177
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYARIGK 122
F+ E ++ WN+++ A+ G +++ M +VT ++ ++ RIG
Sbjct: 178 FDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSV-VTACGRIGD 236
Query: 123 IHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+++ V + + L+ A Y GE+ KA +F M ++V+ W+ M++G
Sbjct: 237 AKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISG 296
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y ++ E + LF EM+ V+P+ +T+ SVLSACA LG+LETG +H Y L+
Sbjct: 297 YTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLT 356
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
TAL+D YAKCG I+ ++E F VK+ + W A+I G+A +G G AL+L M +
Sbjct: 357 TILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRE 416
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ ++ D+TFIG+L ACSH+ LV+EG F M +D+G+ ++EHYGCMVDLLGRA L+D
Sbjct: 417 AGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVD 476
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A + I MP EP I ALLS+C +H+++ IG+ K + + N G+ ++ +N+Y
Sbjct: 477 EAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISL-NPSHSGDYVLLSNIY 535
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
AS GQW++A R M D GI KT G S+IE++G +F A H
Sbjct: 536 ASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDH 581
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 146/312 (46%), Gaps = 13/312 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E+GV D + ++ A G + + +G + G + G + + TAL+ MY
Sbjct: 212 MLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGE 271
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
I A ++F+ M +D++AW++M+ + Q A+ L M L V ++ ++S
Sbjct: 272 IGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSA 331
Query: 117 YARIGKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + + +++ V K + + +L+ Y G ++ A E F+ M VKN TW
Sbjct: 332 CAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTW 391
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYAT 231
++ G + E ++LF M+ ++P +T VL AC++ +E G R A
Sbjct: 392 TALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMAR 451
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH---GYGY 287
D G+ ++D+ + G ++++ + ++ + W A++ A+H G G
Sbjct: 452 DYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGE 511
Query: 288 AALKLLGEMNDS 299
ALK + +N S
Sbjct: 512 EALKQIISLNPS 523
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 257/472 (54%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G D+ + +L A IG+ +HG ++ GF V V TAL+ MY
Sbjct: 122 MSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGS 181
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
+ A +F+ M + +++WNSM+D + G + AM + M + V N+ + G
Sbjct: 182 VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241
Query: 118 -ARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + +++ V DV NSLI Y+ ++ A ++FK + K +++W
Sbjct: 242 CADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSW 301
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY ++ E ++ F EM++ N+KPD T+ SV+ A A L IH
Sbjct: 302 NAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIR 361
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L N TAL+DMYAKCG+I + ++F + V WNAMI G HG G +++L
Sbjct: 362 RFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVEL 421
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM +K +DITF+ LSACSH+GLV+EG F M+KD+G+ ++HYG MVDLLG
Sbjct: 422 FKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLG 481
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L++A + I+ MP +P ++ GA+L AC IH+++++G++ A + K N G +
Sbjct: 482 RAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEI-FKLNPDDGGYHV 540
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YA+ W + + R +M +G+ KT G S++E+ H F +G H
Sbjct: 541 LLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSH 592
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 162/362 (44%), Gaps = 70/362 (19%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V Y+F LLK G S G +HG I +GF +++ T ++ MY R
Sbjct: 21 MKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQ 80
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASC----------------GQMDHAMKLIDLMP- 103
I+DA+ +F++MPE+D++ WN+M+ +A G ++ ++ ++P
Sbjct: 81 INDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPA 140
Query: 104 LKDVTSFNI----------------------MISGYARIGKIHSARYIFDKVPAKDVVSW 141
+ D I ++ Y++ G + AR IFD + + VVSW
Sbjct: 141 VADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSW 200
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NS+I Y +G+ E A +F+KML DE V+
Sbjct: 201 NSMIDGYVQSGDAEGAMLIFQKML---------------------------DE----GVQ 229
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P +TV L ACA+LG LE G +H L S+ +LI MY+KC ++ + ++
Sbjct: 230 PTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADI 289
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + K + WNAMILG A +G AL EM +K D T + ++ A + +
Sbjct: 290 FKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIP 349
Query: 322 QE 323
++
Sbjct: 350 RQ 351
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 10/254 (3%)
Query: 140 SWN-----SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
SWN ++ Y ++ A MF +M ++++ WNTM++GY ++ + L
Sbjct: 62 SWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLR 121
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M +PD +T+ S+L A A+ L G +H Y G S + +TAL+DMY+KCGS
Sbjct: 122 MSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGS 181
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ + +F + V WN+MI G G A+ + +M D V+ ++T +G L A
Sbjct: 182 VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
C+ G ++ G + ++ + + ++ + + + +D A ++ + + + S
Sbjct: 242 CADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300
Query: 375 ----ILGALLSACV 384
ILG + CV
Sbjct: 301 WNAMILGYAQNGCV 314
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 36/298 (12%)
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ GY +S + F MK +V+P T +L C + L+ G IH +G
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
+ N A T +++MYAKC I + +F + +D+ CWN MI G A +G+ AL L+
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEG----------------------CELFS--- 329
M++ + D IT + +L A + L++ G +++S
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180
Query: 330 -----RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLS 381
R+ D R + + M+D ++ + A+ + + M +PT + L
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWE-EANRWRNMMNDT 437
AC DLE G V K+V + SD +M ++Y+ C + + A+ ++N+ N T
Sbjct: 241 ACADLGDLERGKFVHKLV-DQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKT 297
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/506 (32%), Positives = 261/506 (51%), Gaps = 40/506 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ + ++ P LLKA + + ++ HG +K GF G V+V ALL Y S
Sbjct: 101 MIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGS 160
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--------------- 105
+ D+ + F++M ++++++WNSM++ +A G A L + M +
Sbjct: 161 LGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFA 220
Query: 106 ------------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
D+ N ++ Y + G + A FD +P K+ VSW
Sbjct: 221 CSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSW 280
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ A ++ A + F+++ K++I+WN M++ Y++ + E +DL++ MK +
Sbjct: 281 TSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLA 340
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ +VLSAC LG L +G IH DN +L+DMYA+CG ++ ++ +
Sbjct: 341 PDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISL 400
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + K+V WNA+I LA+HG AL M D+ITF+ LLSAC+H GL+
Sbjct: 401 FSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLL 460
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+ G F M + V +EHY CMVDLLGR L +A++LI+ MP P + GALL
Sbjct: 461 EAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLG 520
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH ++IG +V K + +S G ++ +N+ QWE+ R R +M + G+ K
Sbjct: 521 ACRIHGHIQIGKQVIKQLLELEG-MSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKK 579
Query: 442 TAGSSVIEVNGSYHKFLAGGIGHLSN 467
G S IE N + H+ A GIGH S+
Sbjct: 580 NMGVSSIETNSNIHESGAEGIGHESS 605
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 164/376 (43%), Gaps = 53/376 (14%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYAR 119
A ++F+++P+ D +NS++ A+ + A+ L+ M + + + ++ AR
Sbjct: 63 ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122
Query: 120 IGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ V V N+L+ +Y +AG + + F +M+ +NV++WN+M
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ GY ++ E LF+ M+ + D T+ S+L AC+ G+LE G +H + G
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGC 242
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ AL+DMY KCG + + F K+ W +M+ LA AA +
Sbjct: 243 RIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQ 302
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+ + + I++ ++S G E +L++RM+ LLG A
Sbjct: 303 IPEKSI----ISWNAMISCYVQGGRFHEALDLYNRMK-----------------LLGLA- 340
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV--CAKSNYLSDGELMM 413
P E L A+LSAC DL G KM+ C + N+ + G +
Sbjct: 341 ---------------PDEFTLAAVLSACGQLGDLASG----KMIHDCIRDNFHNPGVALF 381
Query: 414 --FANLYASCGQWEEA 427
++YA CGQ + A
Sbjct: 382 NSLLDMYARCGQVDTA 397
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 32/250 (12%)
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD++P D +NSLI AY N+ ++A + + M+ + ++
Sbjct: 58 GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGIL---------- 107
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
P+ T+ +L ACA + + E H G
Sbjct: 108 ---------------------PNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVF 146
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
AL+ YA GS+ S F + ++V WN+MI G A G A L M
Sbjct: 147 VGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQG 206
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ AD+ T + LL ACS G ++ G + S + G L +VD+ G+ L A
Sbjct: 207 LLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVR-GCRIDLILANALVDMYGKCGDLLMA 265
Query: 361 IELIEAMPFE 370
+ MPF+
Sbjct: 266 HTCFDMMPFK 275
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/407 (37%), Positives = 246/407 (60%), Gaps = 4/407 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+DA ++F++M ++D+++W +M+ A G+++ A L D MP+++V S+N MI+GYA+
Sbjct: 142 IEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQN 201
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
++ A +F ++P +D+ SWN++I + GE+ +A ++F +M KNVITW M+TGY+
Sbjct: 202 RRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYV 261
Query: 181 RSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ L E + +F +M A N +KP+ T +VL AC++L L G +IH + +
Sbjct: 262 QHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDST 321
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ALI+MY+KCG + + ++F + +D+ WN MI A HGYG A+ L EM
Sbjct: 322 CVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQ 381
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ V A+D+TF+GLL+ACSH GLV+EG + F + K+ + + +HY C+VDL GRA L
Sbjct: 382 ELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRL 441
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
A +IE + E ++ GALL+ C +H + +IG VA+ + K + G + +N+
Sbjct: 442 KEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKIL-KIEPQNAGTYSLLSNM 500
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YAS G+W+EA R M D G+ K G S IEV + F+ G H
Sbjct: 501 YASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQVFVVGDKPH 547
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 178/377 (47%), Gaps = 48/377 (12%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-KDVTSFNIMISGYAR 119
ID A KVFE+MPE+DI W +M+ + CG + A KL D K+V ++ M++GY +
Sbjct: 17 IDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIK 76
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
++ A +F ++P ++VVSWN+++ Y G ++A ++F++M +NV++WNT++T
Sbjct: 77 FNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITAL 136
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ + LFD+MK D ++ T++++ A G +E + D N
Sbjct: 137 VQCGRIEDAQRLFDQMK----DRDVVSWTTMVAGLAKNGRVEDARALF----DQMPVRNV 188
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ A+I YA+ ++++L++F + +D+ WN MI G +G A KL GEM +
Sbjct: 189 VSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEK 248
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V IT+ +++ GL +E +F
Sbjct: 249 NV----ITWTAMMTGYVQHGLSEEALRVF------------------------------- 273
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
I+++ +P +L AC L G ++ +M+ S + N+Y+
Sbjct: 274 -IKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYS 332
Query: 420 SCGQWEEANRWRNMMND 436
CG+ A R M +D
Sbjct: 333 KCGELHTA---RKMFDD 346
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 146/291 (50%), Gaps = 40/291 (13%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TA++ Y + +A ++F +MP +++++WN+M+D +A G A+ L MP
Sbjct: 63 NVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMP 122
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++V S+N +I+ + G+I A+ +FD++ +DVVSW +++ G +E A +F +
Sbjct: 123 ERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQ 182
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M V+NV++WN M+TGY +++ E + LF M ++ P + T
Sbjct: 183 MPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDM-PSWNT----------------- 224
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+I + + G + ++ ++F + Q K+V W AM+ G H
Sbjct: 225 ---------------------MITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQH 263
Query: 284 GYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G AL++ +M + +K + TF+ +L ACS + EG ++ + K
Sbjct: 264 GLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISK 314
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 152/341 (44%), Gaps = 46/341 (13%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V A++ Y R +D+A ++F++MPE+D+ +WN+M+ F G+++ A KL M
Sbjct: 187 NVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQ 246
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS-------------------- 143
K+V ++ M++GY + G A +F K+ A + + N+
Sbjct: 247 EKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQ 306
Query: 144 --------------------LILAYTNAGEMEKAGEMFKKMLV--KNVITWNTMVTGYLR 181
LI Y+ GE+ A +MF L+ +++I+WN M+ Y
Sbjct: 307 QIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAH 366
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPH 240
E ++LF+EM+ V + +T +L+AC++ G +E G + N +
Sbjct: 367 HGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLRED 426
Query: 241 ATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
L+D+ + G ++++ + + + W A++ G +HG KL+ E
Sbjct: 427 HYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIG-KLVAEKILK 485
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
+ T+ L + + G +E + RM KD G+ ++
Sbjct: 486 IEPQNAGTYSLLSNMYASVGKWKEAANVRMRM-KDMGLKKQ 525
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 17/242 (7%)
Query: 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK- 70
+F +L A L+ G +H KT F V +AL+ MY + A K+F+
Sbjct: 288 TFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDG 347
Query: 71 -MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNIMISGYARIGKIH 124
+ ++D+I+WN M+ A+A G A+ L + M DVT F +++ + G +
Sbjct: 348 LLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVT-FVGLLTACSHTGLVE 406
Query: 125 SARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVKNVIT-WNTMVTG 178
FD++ + + L+ AG +++A + + + + +T W ++ G
Sbjct: 407 EGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAG 466
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-ANLGSLETGARIHVYATDNGLAS 237
++ L E K ++P S+LS A++G + A + + D GL
Sbjct: 467 -CNVHGNADIGKLVAE-KILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKK 524
Query: 238 NP 239
P
Sbjct: 525 QP 526
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/500 (32%), Positives = 267/500 (53%), Gaps = 42/500 (8%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ +FP LLKA L G ++ G V+V A ++DA ++F
Sbjct: 124 DHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLF 183
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD---------------------- 106
++ P +D+++WN+++ + G A++L M +D
Sbjct: 184 DRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRD 243
Query: 107 -------------------VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
V N ++ Y + G + A+ +F+++ + VVSW ++I+
Sbjct: 244 LELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVG 303
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
+ G M+ A ++F +M ++V WN ++TGY++ + E + LF EM+ +V PD +T+
Sbjct: 304 FAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITM 363
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
++L+AC+ LG+LE G +H Y + L + T+LIDMYAKCG+IE+++ +F +
Sbjct: 364 VNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPE 423
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
K+ W AMI GLA HG+ A++ M + K D+ITFIG+LSAC HAGLV+EG E
Sbjct: 424 KNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREF 483
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
FS ME + + RK++HY CM+DLLGRA LD A +L+ MP EP + GA+ AC +
Sbjct: 484 FSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQG 543
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++ +G++ A M + + G ++ AN+YA ++A++ R MM G+ K G S
Sbjct: 544 NISLGEKAA-MKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSC 602
Query: 448 IEVNGSYHKFLAGGIGHLSN 467
IE+NG H+F+ H+ +
Sbjct: 603 IELNGVVHEFIVKDKSHMDS 622
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 41/320 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D + + G + +G LHG G V + AL+ MY ++ A
Sbjct: 224 VRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAK 283
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
VFE++ + +++W +M+ FA G MD A K+ D MP +DV +N +++GY + +
Sbjct: 284 SVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKE 343
Query: 126 ARYIFDKVPAKDVVS----------------------W-----------------NSLIL 146
A +F ++ VV W SLI
Sbjct: 344 ALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLID 403
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G +EKA +FK++ KN +TW M+ G E ++ F M KPD +T
Sbjct: 404 MYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEIT 463
Query: 207 VTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
VLSAC + G ++ G + T L + +ID+ + G ++++ ++
Sbjct: 464 FIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTM 523
Query: 266 QVK-DVFCWNAMILGLALHG 284
++ D W A+ + G
Sbjct: 524 PMEPDAVVWGAIFFACRMQG 543
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 3/173 (1%)
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
+++G +PD+LT +L ACA L G + GL S+ A + G
Sbjct: 116 LRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGP 175
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM--NDSCVKADDITFIGLL 312
+E + +F +S V+D+ WN +I G G AL+L M D+ V+ D++T I +
Sbjct: 176 MEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAV 235
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
S C ++ G L ++ D GV+ + ++D+ + L+ A + E
Sbjct: 236 SGCGQMRDLELGRRLHGFVDSD-GVSCTVRLMNALMDMYIKCGSLEMAKSVFE 287
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 10/185 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE V D + LL A L + +G+ +H K V + T+L+ MY
Sbjct: 351 MQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGN 410
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ----MDHAMKLIDLMPLKDVTSFNIMISG 116
I+ A +F+++PEK+ + W +M+ A+ G ++H +I+L D +F ++S
Sbjct: 411 IEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSA 470
Query: 117 YARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + R F + K + ++ +I AG +++A ++ M ++ + +
Sbjct: 471 CCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAV 530
Query: 171 TWNTM 175
W +
Sbjct: 531 VWGAI 535
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 170/468 (36%), Positives = 251/468 (53%), Gaps = 11/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV ++FP LLKA L S H +K G +V+ +L+ Y S
Sbjct: 95 MRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGL 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-MISGYAR 119
D A ++F+ +KD++ W +M+D F G AM M V + + ++S
Sbjct: 154 FDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKA 213
Query: 120 IGKIHSAR--------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
GK+ R Y+ DV +SL+ Y + A ++F +M +NV+T
Sbjct: 214 AGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVT 273
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W ++ GY++S+ + + + +F+EM +V P+ T++SVLSACA++G+L G R+H Y
Sbjct: 274 WTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMI 333
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N + N A T LID+Y KCG +E+++ VF + K+V+ W AMI G A HGY A
Sbjct: 334 KNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFD 393
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L M S V +++TF+ +LSAC+H GLV+EG LF M+ F + K +HY CMVDL
Sbjct: 394 LFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLF 453
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GR LL+ A LIE MP EPT + GAL +C++H+D E+G A V K G
Sbjct: 454 GRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVI-KLQPSHSGRY 512
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ ANLY+ W+E R R M D +VK+ G S IEV G +F+A
Sbjct: 513 TLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIA 560
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 161/426 (37%), Positives = 250/426 (58%), Gaps = 7/426 (1%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKM----PEKDIIAWNSMLDAFA-SCGQMDHAMKL 98
+V+ +A++ + R D AF + +M E + ++S+L + + G++ H +
Sbjct: 109 NVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHC-QA 167
Query: 99 IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAG 158
I L D+ ++ YAR G + AR +FDK+P + +VS +++ Y+ GE++KA
Sbjct: 168 IKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKAR 227
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+F+ M ++V+ WN M+ GY +S + E + LF M P+ +TV +VLSAC LG
Sbjct: 228 SLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLG 287
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+LE+G IH Y + G+ N H TALIDMY+KCGS+E + VF + + KDV WN+MI+
Sbjct: 288 ALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIV 347
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
G A+HG+ AL+L EM ++ K DITFIG+LSAC H GLV+EG F M +G+
Sbjct: 348 GYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIE 407
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
K+EHYGCMV+LLGRA L+ A L++ M + G LL C +H ++++G+ +AK
Sbjct: 408 PKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKF 467
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ + G ++ +N+YA+ G WE + R +M + GI K G S IEV+ H+F+
Sbjct: 468 L-VDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFV 526
Query: 459 AGGIGH 464
AG H
Sbjct: 527 AGERKH 532
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 145/324 (44%), Gaps = 45/324 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV + ++F +LK+ + S G +LH Q IK G +YV+T L+ +Y
Sbjct: 136 MLSCGVEPNAFTFSSVLKSCSLES----GKVLHCQAIKLGLGSDLYVRTGLVDVYARGGD 191
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-- 118
+ A ++F+KMPE+ +++ +ML ++ G++D A L + M +DV +N+MI GYA
Sbjct: 192 VVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQS 251
Query: 119 ---------------------------------RIGKIHSARYIFDKVPAK----DVVSW 141
++G + S R+I + K +V
Sbjct: 252 GVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVG 311
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+LI Y+ G +E A +F ++ K+V+ WN+M+ GY + LF+EM K
Sbjct: 312 TALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHK 371
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLE 260
P +T +LSAC + G +E G D G+ ++++ + G +E++
Sbjct: 372 PTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYG 431
Query: 261 VFYKSQV-KDVFCWNAMILGLALH 283
+ + D W ++ LH
Sbjct: 432 LVKNMTIAADPVLWGTLLGCCRLH 455
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 35/217 (16%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
+Y G ++ + +F NV +++ ++ +++S+L+ + +M + V+P+ T
Sbjct: 88 SYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFT 147
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA---------------- 250
+SVL +C SLE+G +H A GL S+ + T L+D+YA
Sbjct: 148 FSSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMP 203
Query: 251 ---------------KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
K G ++++ +F + +DV CWN MI G A G +LKL
Sbjct: 204 ERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRR 263
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
M + +++T + +LSAC G ++ G + S +E
Sbjct: 264 MLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIE 300
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 21/240 (8%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L A G L + G +H G +V+V TAL+ MY ++DA VF+++ +KD
Sbjct: 279 VLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKD 338
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYARIGKIHSARYIF 130
++AWNSM+ +A G HA++L + M D+T I+ S G + R F
Sbjct: 339 VVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGIL-SACGHGGLVEEGRSFF 397
Query: 131 DKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLV-KNVITWNTMVTGYLRSQL 184
+ K + + ++ AG +E+A + K M + + + W T++ G R +
Sbjct: 398 RLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLL-GCCRLHV 456
Query: 185 YI----EVVDLFDEMKAGNVKPDYLTVTSVLSACAN---LGSLETGARIHVYATDNGLAS 237
I E+ + K N Y+ ++++ +A N + + T + H ++G +S
Sbjct: 457 NIKLGEEIAKFLVDQKLAN-SGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSS 515
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 245/443 (55%), Gaps = 2/443 (0%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGSLRCIDDA 64
V D++S P L AA L +G LH ++ G + V AL+ +Y + A
Sbjct: 77 VSPDHFSLPFALNAAASLRLLPLGASLHALALRLALLPGRLPVANALVDLYAKCDDLPAA 136
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+ D +++NS+L A A + A L MP + S+N M+ Y G +
Sbjct: 137 HTALADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVYVNAGDVS 196
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SAR +FD++P +D SW+ LI+ Y G M A E+F +M KN++ W M+ GY +S +
Sbjct: 197 SARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGV 256
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E + LF EM+A ++PD T+ V+SA + +GS E + Y + N TA
Sbjct: 257 PKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTA 316
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DM+AKCG+++++L F + D + + A+I GLA HG+ AL++ M V D
Sbjct: 317 LVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPD 376
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITF+G+L+ACSHAGLV +G + + M K +G+ R+ +HY C+VD+LGRA L+ A E++
Sbjct: 377 PITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMV 436
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
+ MP P LGALLSAC H ++EI + VA + + + G +M +N+YA QW
Sbjct: 437 QTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPH-NTGNYIMLSNIYAEKEQW 495
Query: 425 EEANRWRNMMNDTGIVKTAGSSV 447
EEA R R++M K GSS+
Sbjct: 496 EEAERIRSVMRTRVPFKQPGSSM 518
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 175/472 (37%), Positives = 259/472 (54%), Gaps = 10/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GVH D ++FP +LKA L + ++HGQ IK GF V+VQ L+ +Y
Sbjct: 145 MRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGH 204
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
I A VF+ + + I++W S++ +A G+ A+++ M D + ++
Sbjct: 205 IGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRA 264
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVITW 172
Y + + R I V + +L+++ Y G + A F +M NVI W
Sbjct: 265 YTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMW 324
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M++GY ++ E V+LF M + N+KPD +TV S + A A +GSLE + Y +
Sbjct: 325 NAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSK 384
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ S+ T+LIDMYAKCGS+E + VF ++ KDV W+AMI+G LHG G+ A+ L
Sbjct: 385 SNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINL 444
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M + V +D+TFIGLL+AC+H+GLV+EG ELF M KDF + + EHY C+VDLLG
Sbjct: 445 YHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLG 503
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L A I +P EP S+ GALLSAC I++ + +G+ A + + Y + G +
Sbjct: 504 RAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPY-NTGHYV 562
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+NLYAS W+ R +M + G+ K G SVIE+NG F G H
Sbjct: 563 QLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSH 614
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ +N G++ A ++F + +V WN ++ Y R+ +Y + V+++ M+ V PD
Sbjct: 94 LVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPD 153
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T VL AC L IH G S+ L+ +YAKCG I + VF
Sbjct: 154 GFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFD 213
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ + W ++I G A +G AL++ +M ++ VK D I + +L A + +++
Sbjct: 214 GLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQ 273
Query: 324 G 324
G
Sbjct: 274 G 274
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 224/364 (61%), Gaps = 3/364 (0%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D+ + ++ YA++G + SAR +FD++P +D+ +WNSLI Y +G ME A E+F KM
Sbjct: 116 DMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMP 175
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLETGA 224
V+NVI+W +++GY ++ Y + +++F ++ KP+ +++ SVL AC+ LG+L+ G
Sbjct: 176 VRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGK 235
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC-WNAMILGLALH 283
RI YA +NG N + + A+++++A+CG+IE++ +VF + K C WN MI+GLA+H
Sbjct: 236 RIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVH 295
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G AL+L +M ++ DD+TF+GLL AC+H G+V EG +LF ME F V KLEH
Sbjct: 296 GRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEH 355
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
YGC+VDLLGRA L A LI+ MP P I G LL AC H ++E+G+ VA K
Sbjct: 356 YGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGE-VAAESLFKL 414
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIG 463
+ G ++ +N+YA G W R R MM I K AG S IEV H+F+
Sbjct: 415 EPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRS 474
Query: 464 HLSN 467
HL +
Sbjct: 475 HLKS 478
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 43/323 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + YSF L A L + G MLH K+GF ++ TALL MY L + A
Sbjct: 77 GCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSA 136
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
++F++MP +DI WNS++ +A G M+ A++L + MP+++V S+ +ISGYA+ GK
Sbjct: 137 RQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYA 196
Query: 125 SARYIF-----------------DKVPA-----------------------KDVVSWNSL 144
A +F +PA K+ N++
Sbjct: 197 KALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAV 256
Query: 145 ILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+ + G +E+A ++F ++ K N+ +WNTM+ G I+ + L+D+M ++PD
Sbjct: 257 LELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPD 316
Query: 204 YLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T +L AC + G + G ++ + +A L+D+ + G ++++ +
Sbjct: 317 DVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLI 376
Query: 263 YK-SQVKDVFCWNAMILGLALHG 284
D W ++ + HG
Sbjct: 377 QNMPMAPDSVIWGTLLGACSFHG 399
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 77/328 (23%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D T F +I ++ + A +FD++P V +N I +++ G +
Sbjct: 17 DHTKF--LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRC-------- 66
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
W L+ +M + P+ + T + ACA+L ++ G
Sbjct: 67 ------W-----------------LLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQM 103
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H + +G AS+ A TAL+DMYAK G + + ++F + V+D+ WN++I G A G+
Sbjct: 104 LHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGH 163
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
AAL+L +M V I++ L+S + G + E+F +E + G
Sbjct: 164 MEAALELFNKMPVRNV----ISWTALISGYAQNGKYAKALEMFIGLENEKGT-------- 211
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV----CA 401
+P E + ++L AC L+IG R+
Sbjct: 212 ------------------------KPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFF 247
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANR 429
K+ Y+S+ L L+A CG EEA +
Sbjct: 248 KNAYVSNAVL----ELHARCGNIEEAQQ 271
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 89/185 (48%), Gaps = 11/185 (5%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E G + S +L A L + IG + GF + YV A+L+++ I+
Sbjct: 208 EKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIE 267
Query: 63 DAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY---- 117
+A +VF+++ ++++ +WN+M+ A G+ A++L D M ++ + ++ G
Sbjct: 268 EAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLAC 327
Query: 118 ARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKM-LVKNVIT 171
G + R +F+ + +K V+ + L+ AGE+++A + + M + + +
Sbjct: 328 THGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVI 387
Query: 172 WNTMV 176
W T++
Sbjct: 388 WGTLL 392
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 167/467 (35%), Positives = 256/467 (54%), Gaps = 13/467 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D +F LL A +G +H + K G V T+L+ MY
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGD 247
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS----- 115
I A +F+K+PEK+++ W ++ +A GQ+D A++L++ M +V I +
Sbjct: 248 ISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQG 307
Query: 116 -----GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
K+H RYI +++ N+LI Y G +++A ++F + ++V+
Sbjct: 308 CTTPLALEHGKKVH--RYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVV 365
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TW MVTGY + + E +DLF M+ +KPD +T TS L++C++ L+ G IH
Sbjct: 366 TWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQL 425
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G + + + +AL+ MYAKCGS++ + VF + ++V W AMI G A HG AL
Sbjct: 426 VHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREAL 485
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ +M +K D +TF +LSAC+H GLV+EG + F M D+G+ +EHY C VDL
Sbjct: 486 EYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDL 545
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L+ A +I MPF+P S+ GALLSAC IH D+E G+R A+ V K + DG
Sbjct: 546 LGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVL-KLDPDDDGA 604
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+ +N+YA+ G++E+A + R +M +VK G S IEV+G H F
Sbjct: 605 YVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVF 651
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 156/358 (43%), Gaps = 70/358 (19%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
F LL+ L S G +H +K+G + Y++ LL MY + DA +VF+ +
Sbjct: 99 FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIR 158
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG------------ 116
+++I++W +M++AF + Q A K + M L D +F +++
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218
Query: 117 -----------------------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE 153
YA+ G I A+ IFDK+P K+VV+W LI Y G+
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
++ A E+ +K M+ V P+ +T TS+L
Sbjct: 279 VDVALELLEK-------------------------------MQQAEVAPNKITYTSILQG 307
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
C +LE G ++H Y +G ALI MY KCG ++++ ++F +DV W
Sbjct: 308 CTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTW 367
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
AM+ G A G+ A+ L M +K D +TF L++CS +QEG + ++
Sbjct: 368 TAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQL 425
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 169/407 (41%), Gaps = 41/407 (10%)
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----ARIGKIHSARYIF 130
D +A + + G++ A+ +++ M L+ ++ + G AR+ + R +
Sbjct: 60 DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119
Query: 131 DKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
+ + N+L+ Y G + A +F + +N+++W M+ ++ +
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E ++ MK KPD +T S+L+A N L+ G ++H+ GL P T+L+
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLV 239
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
MYAKCG I ++ +F K K+V W +I G A G AL+LL +M + V + I
Sbjct: 240 GMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKI 299
Query: 307 TFIGLLSACS-----------HAGLVQEG-----------------CELFSRMEKDFG-- 336
T+ +L C+ H ++Q G C K FG
Sbjct: 300 TYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDL 359
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGD 393
R + + MV + D AI+L M +P + + L++C L+ G
Sbjct: 360 PHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGK 419
Query: 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+ + + L ++YA CG ++A N M++ +V
Sbjct: 420 SIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVV 466
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 177/496 (35%), Positives = 259/496 (52%), Gaps = 68/496 (13%)
Query: 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI 76
+A G L + G LHG +KTG VQ++LL MY +++A F ++ +KD+
Sbjct: 242 FQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDV 301
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----------------------------- 107
+W S++ A G M+ + L M + DV
Sbjct: 302 FSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGL 361
Query: 108 ----------TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN------- 150
T N ++S Y + G ++ A +FD V SWN+++ Y +
Sbjct: 362 IVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNS 421
Query: 151 -----------------AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD 193
G + A +MF + ++V+TWNT+++ Y S Y E + LFD
Sbjct: 422 VDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQ-RDVVTWNTLISSYTHSGHYAEAITLFD 480
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
EM + + P+ T+ VLSAC +L SLE G +H Y + G N TAL+DMYAKCG
Sbjct: 481 EMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCG 540
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+EQS E+F + KDV WN MI G LHG +A+++ +M S VK + ITF+ LLS
Sbjct: 541 QLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAITFLSLLS 600
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
AC+HAG V EG +LF RM+ + + L+H+ CM DLLGR+ L A +L+++MP P
Sbjct: 601 ACTHAGYVDEGKQLFDRMQY-YSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMPICPDG 659
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCA-KSNYLSDGELMMFANLYASCGQWEEANRWRN 432
+ G LLSAC IH ++EIG RVAK CA +S+ +DG +M +N+Y S G+W+EA R R
Sbjct: 660 GVWGTLLSACKIHNEIEIGIRVAK--CAIESDPENDGYYIMLSNMYGSMGKWDEAERARE 717
Query: 433 MMNDTGIVKTAGSSVI 448
+M + GI K AG S +
Sbjct: 718 LMKERGIGKRAGWSAV 733
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 141/305 (46%), Gaps = 14/305 (4%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
H I TG +V++ + L+ +Y S R + VF+ +KD WNS++ + S G
Sbjct: 52 HALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNGNY 111
Query: 93 DHAMKLI-----DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS---- 143
A D P T ++++ A + + +YI V + + NS
Sbjct: 112 FKAFDFYIQMRYDNTPPNQFT-IPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGS 170
Query: 144 -LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK---AGN 199
+ Y G ME A MF +++V++V++W +V GY+ + + ++ EM+
Sbjct: 171 SFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDG 230
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
K + T+ AC NLG++ G +H A GL + ++L+ MY+KCG++E++
Sbjct: 231 EKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAH 290
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
F + KDVF W ++I A G+ L L +M V D I +L ++
Sbjct: 291 NSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSM 350
Query: 320 LVQEG 324
+V+EG
Sbjct: 351 MVREG 355
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 35/257 (13%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
++ ++ + ++L A L S G M+H + GF +V + TAL+ MY ++ +
Sbjct: 487 LNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCGQLEQSR 546
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
++F M EKD+I+WN M+ + G + AM++ M +V
Sbjct: 547 ELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVK----------------- 589
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM----LVKNVITWNTMVTGYLR 181
+ +++ SL+ A T+AG +++ ++F +M + N+ + M R
Sbjct: 590 ----------PNAITFLSLLSACTHAGYVDEGKQLFDRMQYYSIKPNLKHFACMADLLGR 639
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
S E DL M + PD ++LSAC +E G R+ A ++ N
Sbjct: 640 SGNLQEAEDLVQSMP---ICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESD-PENDGY 695
Query: 242 TTALIDMYAKCGSIEQS 258
L +MY G +++
Sbjct: 696 YIMLSNMYGSMGKWDEA 712
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%)
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+L++ + H G A+N ++ LI +YA S VF + KD F WN++I
Sbjct: 44 TLQSLHKSHALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIK 103
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+G + A +M + T +++ C+ ++EG
Sbjct: 104 SHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEG 149
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 157/430 (36%), Positives = 237/430 (55%), Gaps = 27/430 (6%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
D A +F+KMPE+D+ +WN ML + + A L + MP +D+ S+N M+SGYA+
Sbjct: 11 FDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQN 70
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK------------------ 162
G + AR IF K+P K+ +SWN L+ AY G +E A +F+
Sbjct: 71 GFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFV 130
Query: 163 --------KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
M ++ I+W+ M+ GY ++ E + F EM+ + + + T LS C
Sbjct: 131 RKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTC 190
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
+N+ +LE G ++H G + + AL+ MY KCGSI+++ + F + KDV WN
Sbjct: 191 SNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWN 250
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
MI G A HG+G AL + M + ++ DD T + +L+ACSHAGLV +G E F M +D
Sbjct: 251 TMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRD 310
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
+G+T KL HY CMVDLLGRA L+ A L++ MPFEP + GALL A IH + E+G++
Sbjct: 311 YGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEK 370
Query: 395 VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSY 454
A+++ + S G ++ + LYA+ G+W +A + R M + G+ K G S +EV
Sbjct: 371 AAQIIFEMEPHNS-GMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKI 429
Query: 455 HKFLAGGIGH 464
H F G H
Sbjct: 430 HTFKVGDTSH 439
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + SF L +++ +G LH + +K G+ YV ALL MY
Sbjct: 171 MQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGS 230
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
ID+A F+++ EKD+++WN+M+ +A G + A+ + +LM D + +++
Sbjct: 231 IDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAA 290
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + F D +V + ++ AG++E+A + K M + +
Sbjct: 291 CSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAA 350
Query: 171 TWNTMV 176
TW ++
Sbjct: 351 TWGALL 356
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 179/503 (35%), Positives = 272/503 (54%), Gaps = 57/503 (11%)
Query: 14 PLLLKAAGILS--SSCIGL----MLHGQTIKTGFCGHVYVQT-----ALLKMYGSLRCID 62
P LL IL SSC L +H QTI TG +V + A L +GS I
Sbjct: 30 PQLLCKYPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGS---IP 86
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFA-SCGQMD------------------HAMKLI---- 99
A +F ++ + DI N+++ A+A S +D H L+
Sbjct: 87 YARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKAC 146
Query: 100 -DLMPLK----------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
++ L+ +V+ N ++ YA G I SA +FD+ P D SWN
Sbjct: 147 SEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWN 206
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+I Y G + A MF+ M ++V++W+ M+ GY++ + E + LF +M ++P
Sbjct: 207 IMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEP 266
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+ + + LSACA+LG++E G I Y + TALIDMY+KCGS+E++LEVF
Sbjct: 267 NESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVF 326
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+K + K+V W+AMI GLA++G G AL L +M VK +++TFIG+L+ACSH+ LV
Sbjct: 327 HKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVD 386
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EGC F M +G+ H+ CMVDL GRA +LD+A +I++MPF+P +I GALL+A
Sbjct: 387 EGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNA 446
Query: 383 CVIHQDLEIGDRVAKMVCA-KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
C IH D E+G++V K + N+ G ++ +N+YA+CG+W+ R MM + + K
Sbjct: 447 CRIHGDTELGEQVGKRLLELDPNH--GGRYVLLSNIYAACGRWDRVAELRRMMRERQVSK 504
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
T G S I++ + H+F+AG H
Sbjct: 505 TPGCSFIDLGDTIHEFVAGDSSH 527
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 150/320 (46%), Gaps = 41/320 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D ++FPLLLKA + S +G +H K G+ V V L++MY S I+ A
Sbjct: 132 VFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAG 191
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
VF++ PE D +WN M+ + CG A ++ + MP +DV S+++MI+GY + +
Sbjct: 192 LVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKE 251
Query: 126 ARYIF-----DKVPAKDVV-----------------SW-----------------NSLIL 146
+F +K+ + V W +LI
Sbjct: 252 GLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALID 311
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y+ G +E+A E+F KM KNV+ W+ M+ G + + ++LF +M+ VKP+ +T
Sbjct: 312 MYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVT 371
Query: 207 VTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+L+AC++ ++ G H + GL N H ++D+Y + G ++Q+ V
Sbjct: 372 FIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSM 431
Query: 266 QVK-DVFCWNAMILGLALHG 284
K + W A++ +HG
Sbjct: 432 PFKPNSAIWGALLNACRIHG 451
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 155/447 (34%), Positives = 250/447 (55%), Gaps = 42/447 (9%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y IDDA+K+F +MPEKD ++W +M++ + G++ A ++++LMP K++
Sbjct: 268 NAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIA 327
Query: 109 S-------------------------------FNIMISGYARIGKIHSARYIFDKVPAKD 137
+ +N MI+GYA G+ A +F ++ KD
Sbjct: 328 AQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKD 387
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
+VSWN++I AY AG+M+KA EMF +M +NV++WN+++TGY+++ LY E ++ F MK
Sbjct: 388 MVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQ 447
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KPD T+ L A ANL +L G ++H G ++ A++ MYAK G + +
Sbjct: 448 QGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPE 507
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ VF + + KDV WN++I G AL+G G A++L M + D++TF GLLSAC+H
Sbjct: 508 AENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNH 567
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
G V +G LF M + + + + EHY C+++LLGR L+ A+E+++ M + I G
Sbjct: 568 GGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWG 627
Query: 378 ALLSACVIHQDLEIGDRVAKMVCA-----KSNYLSDGELMMFANLYASCGQWEEANRWRN 432
ALL AC IH +LE+ A+ + A SNY+ + +N++A G+W+ R R
Sbjct: 628 ALLWACRIHHNLELAKYSAERLLALEPQNASNYV------LLSNMHAEAGRWDMVERVRV 681
Query: 433 MMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+M + K G S IE++ H FL+
Sbjct: 682 LMKENKAEKQPGCSWIEIDNQLHCFLS 708
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 158/286 (55%), Gaps = 12/286 (4%)
Query: 48 QTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV 107
+ AL+ Y R +A K+F++M K++++WNS+L + G+M ++ + M ++V
Sbjct: 143 RNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNV 202
Query: 108 TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
S+N+M+ GY +G + SA F K+P +VVSW +++ + + G M +A +F +M K
Sbjct: 203 VSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK 262
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N+++WN M+ Y+R + LF EM + D ++ T++++ +G L I
Sbjct: 263 NLVSWNAMIGAYVRENQIDDAYKLFMEMP----EKDSVSWTAMINGYVRVGKLLQAREIL 318
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+A A TA+I+ Y + G ++++ E+F + V+D CWN+MI G A G
Sbjct: 319 NLMPYKNIA----AQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTD 374
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
AL+L EM V D +++ +++A + AG + + E+F+ M++
Sbjct: 375 EALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQE 416
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 187/390 (47%), Gaps = 29/390 (7%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V+ Q + G I++A VF KM E++I+ +NSM+ A+A G++ +A +L DLMP
Sbjct: 14 YVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMP 73
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+++ S+N MI+GY + A +FD++ +D+ SW +I YT GE+EKA E+F
Sbjct: 74 QRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNL 133
Query: 164 MLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+ K + + N ++ GY + +L+ E LFDEM NV ++ S+LS G ++
Sbjct: 134 LPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNV----VSWNSILSGYTKNGKMQL 189
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G + + + S ++D Y G ++ + F K +V W M+ G A
Sbjct: 190 GLQFFEAMGERNVVS----WNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAH 245
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
+G A L EM + +++ ++ A + + +LF M + V+
Sbjct: 246 YGRMTEARNLFNEMPTKNL----VSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVS---- 297
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMV 399
+ M++ R L +A E++ MP++ +++ L + + + EI +++
Sbjct: 298 -WTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRD 356
Query: 400 CAKSNYLSDGELMMFANLYASCGQWEEANR 429
N + G YA CG+ +EA R
Sbjct: 357 SVCWNSMITG--------YAHCGRTDEALR 378
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 67/116 (57%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G D + L+A+ L++ +G+ LH TIKTGF ++V+ A+L MY
Sbjct: 445 MKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGR 504
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+ +A VF ++ KD+++WNS++ +A G A++L ++MPL+ + + +G
Sbjct: 505 VPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTG 560
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 118/298 (39%), Gaps = 76/298 (25%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C + ++ Y +D A ++F +M E+++++WNS++ + G A+ L
Sbjct: 385 CKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFIL 444
Query: 102 MPLK---------------------------------------DVTSFNIMISGYARIGK 122
M + D+ N +++ YA+ G+
Sbjct: 445 MKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGR 504
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ A +F ++ KDVVSWNSLI Y G ++A E+F+ M ++ +I
Sbjct: 505 VPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGII------------ 552
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHA 241
PD +T T +LSAC + G ++ G + T+ +
Sbjct: 553 -------------------PDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEH 593
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQ-VKDVFCWNAMILGLALHGY----GYAALKLLG 294
+I++ + G +E+++E+ + V W A++ +H Y+A +LL
Sbjct: 594 YACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLA 651
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 164/455 (36%), Positives = 256/455 (56%), Gaps = 40/455 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ GV D Y+F +LKA L G HG+ ++ GF + YV+ AL+ +
Sbjct: 103 MEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFH----- 157
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A+CG + A +L D +++ M SGYA+
Sbjct: 158 --------------------------ANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKR 191
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GKI A +FD++P KD V+WN +I EM+ A E+F + K+V+TWN M++GY+
Sbjct: 192 GKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYV 251
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LASNP 239
E + +F EM+ PD +T+ S+LSACA LG LETG R+H+Y + ++S+
Sbjct: 252 NCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSI 311
Query: 240 HATT----ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ T ALIDMYAKCGSI++++EVF + +D+ WN +I+GLALH + ++++ E
Sbjct: 312 YVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEE 370
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M V +++TFIG++ ACSH+G V EG + FS M + + ++HYGCMVD+LGRA
Sbjct: 371 MQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAG 430
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGELMMF 414
L+ A +E+M EP + LL AC I+ ++E+G K++ + + G+ ++
Sbjct: 431 QLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD--ESGDYVLL 488
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+N+YAS GQW+ + R M +DT + K G S+IE
Sbjct: 489 SNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 17/285 (5%)
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
G ++ A ++F ++ +V N ++ G +S + V L+ EM+ V PD T T V
Sbjct: 59 PGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFV 118
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
L AC+ L G H +G N + ALI +A CG + + E+F S
Sbjct: 119 LKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHK 178
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
W++M G A G A++L EM D + + +++ C + ELF R
Sbjct: 179 VAWSSMTSGYAKRGKIDEAMRLFDEMP----YKDQVAWNVMITGCLKCKEMDSARELFDR 234
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQ 387
+ VT + M+ A+ + + M P + +LLSAC +
Sbjct: 235 FTEKDVVT-----WNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLG 289
Query: 388 DLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEA 427
DLE G R+ + + S Y+ ++YA CG + A
Sbjct: 290 DLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRA 334
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 164/455 (36%), Positives = 256/455 (56%), Gaps = 40/455 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ GV D Y+F +LKA L G HG+ ++ GF + YV+ AL+ +
Sbjct: 69 MEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFH----- 123
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A+CG + A +L D +++ M SGYA+
Sbjct: 124 --------------------------ANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKR 157
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GKI A +FD++P KD V+WN +I EM+ A E+F + K+V+TWN M++GY+
Sbjct: 158 GKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYV 217
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LASNP 239
E + +F EM+ PD +T+ S+LSACA LG LETG R+H+Y + ++S+
Sbjct: 218 NCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSI 277
Query: 240 HATT----ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ T ALIDMYAKCGSI++++EVF + +D+ WN +I+GLALH + ++++ E
Sbjct: 278 YVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEE 336
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M V +++TFIG++ ACSH+G V EG + FS M + + ++HYGCMVD+LGRA
Sbjct: 337 MQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAG 396
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGELMMF 414
L+ A +E+M EP + LL AC I+ ++E+G K++ + + G+ ++
Sbjct: 397 QLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD--ESGDYVLL 454
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+N+YAS GQW+ + R M +DT + K G S+IE
Sbjct: 455 SNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 489
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 17/285 (5%)
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
G ++ A ++F ++ +V N ++ G +S + V L+ EM+ V PD T T V
Sbjct: 25 PGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFV 84
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
L AC+ L G H +G N + ALI +A CG + + E+F S
Sbjct: 85 LKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHK 144
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
W++M G A G A++L EM D + + +++ C + ELF R
Sbjct: 145 VAWSSMTSGYAKRGKIDEAMRLFDEMP----YKDQVAWNVMITGCLKCKEMDSARELFDR 200
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQ 387
+ VT + M+ A+ + + M P + +LLSAC +
Sbjct: 201 FTEKDVVT-----WNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLG 255
Query: 388 DLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEA 427
DLE G R+ + + S Y+ ++YA CG + A
Sbjct: 256 DLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRA 300
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 158/445 (35%), Positives = 243/445 (54%), Gaps = 2/445 (0%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDDA 64
V D++S P L AA L G LH + + V AL+ +Y + A
Sbjct: 77 VSPDHFSLPFALNAAASLGLFRFGASLHALAFRLALVPARLPVANALVDLYAKCDALPAA 136
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+P D +++NS+L A A + A L MP + S+N M+ Y G
Sbjct: 137 HAALASIPAPDAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYVNAGDFA 196
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SAR +FD++P +D SW+ LI+ Y G M+ A E+F KM KN++TW M+ GY +
Sbjct: 197 SARLVFDEMPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGR 256
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E + LF E++A ++PD T+ V+S+ + +GS + Y + N TA
Sbjct: 257 PKESISLFRELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIERNEKVLTA 316
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DM+AKCG++EQ+L F + + D + + A+I GLA HG+ AL++ M V+ D
Sbjct: 317 LVDMHAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPD 376
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITF+G+L+ACSHAGLV G + + M +D+G+ R+ +HY C+VD+LGRA + A +++
Sbjct: 377 PITFVGVLTACSHAGLVDMGLDYWEAMVQDYGMDRRADHYACVVDMLGRAGRIVEAFDMV 436
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
+ MP P LGALLSAC H ++EI + VA + + + G ++ +N+YA QW
Sbjct: 437 QTMPMGPHPGALGALLSACKTHDNVEIAEIVANKLF-ELEPRNTGNYILLSNIYAGKEQW 495
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIE 449
EEA R R++M K GS+ +E
Sbjct: 496 EEAERIRSLMRTKLPFKQPGSTWVE 520
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 166/506 (32%), Positives = 263/506 (51%), Gaps = 41/506 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV + ++ P ++KA + L +HG +K GF G V+V ALL Y S
Sbjct: 36 MLRRGVLPNEFTLPFVVKACTRAQAWDNALAVHGVALKLGFVGQVFVANALLHSYASAGS 95
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------------------------ 96
+ D+ + F++M +++++WNSM+ +A G A
Sbjct: 96 LGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLA 155
Query: 97 ----------KLIDLMPLKDVTSFNIMISG-----YARIGKIHSARYIFDKVPAKDVVSW 141
+L+ + L + ++++ G Y++ G + AR F+ +P K VVSW
Sbjct: 156 CSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSW 215
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ A T G ++ A F M +N ++WNTM++ Y++ Y E +DL+ +M++
Sbjct: 216 TSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPA 275
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ VLSAC +G L G +H+Y DN + +L+DMYAKCG ++ ++ +
Sbjct: 276 PDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRL 335
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + ++V WN +I GLA+HG A+ M + D ITF+ LLS+CSH GL+
Sbjct: 336 FREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSMVRN-TSPDGITFVALLSSCSHGGLL 394
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+ G F M + V ++EHY CMVDLLGR L++A+ LI+ MP +P + GALL
Sbjct: 395 ETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLG 454
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH +++IG +V K + +S G ++ +NL QWE+ R R +M + G K
Sbjct: 455 ACRIHGNVKIGKQVIKQLLELEG-ISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRK 513
Query: 442 TAGSSVIEVNGSYHKFLAGGIGHLSN 467
G S IE+N S H+F I H S+
Sbjct: 514 DMGVSSIEINNSIHEFGVEDIRHESS 539
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 87/215 (40%), Gaps = 1/215 (0%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
MF +L + + +NT+ Y S E + L M V P+ T+ V+ AC +
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+ +H A G AL+ YA GS+ S F + ++V WN+MI G
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
A G A L GEM D+ T LL ACS G ++ G L + G
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFG-RLVHCLMLVSGSPV 179
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
L G +VD+ + L A E MP + S
Sbjct: 180 DLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVS 214
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 169/475 (35%), Positives = 268/475 (56%), Gaps = 15/475 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + + D+++F +LKA L+ +G+M+H KTGF V+V+T ++ Y
Sbjct: 95 MHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGF 154
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID------LMPLKDVTSFNIMI 114
+ DA+KVF+ M K++++W M+ G+ A+ L L P D ++
Sbjct: 155 LRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRP--DGFVIVRVL 212
Query: 115 SGYARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
AR+G + S R+I D+ +++V SL+ YT G ME+A +F M+ K++
Sbjct: 213 RACARLGDLESGRWI-DRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDI 271
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+ W+ M+ GY + L E ++LF EM+ NV+PD + LS+CA+LG+LE G
Sbjct: 272 VCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGL 331
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
SNP T+LID YAKCGS+E++L V+ + KD +NA+I GLA++G AA
Sbjct: 332 MNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAA 391
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+ G+M + ++ TF+GLL C+HAGLV +G F+ M DF VT +EHYGCMVD
Sbjct: 392 FGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVD 451
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LL RA LD A LI+ MP + + G+LL C +H++ ++ + V K + + S G
Sbjct: 452 LLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNS-G 510
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+Y++ +W+EA + R+ +N+ G+ K G S +EV+G H+FL G H
Sbjct: 511 HYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSH 565
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 125/305 (40%), Gaps = 39/305 (12%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N +NTM+ G + + V L+ M + PD T + VL ACA L G IH
Sbjct: 68 NTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIH 127
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
G + T ++ Y+KCG + + +VF VK+V W MI G G
Sbjct: 128 SLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFR 187
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
A+ L + +S ++ D + +L AC+ G ++ G R ++ G++R + +
Sbjct: 188 EAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESG-RWIDRCMRECGLSRNVFVATSL 246
Query: 348 VDLLGRARLLDRAIELIEAM--------------------PFEPTE-------------- 373
VD+ + ++ A + + M P E E
Sbjct: 247 VDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDC 306
Query: 374 -SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWR 431
+++GA LS+C LE+G+ AK + +LS+ L + YA CG EEA
Sbjct: 307 YAMVGA-LSSCASLGALELGNW-AKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVY 364
Query: 432 NMMND 436
MM +
Sbjct: 365 KMMKE 369
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 165/506 (32%), Positives = 261/506 (51%), Gaps = 40/506 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ + ++ P LLKA + + ++ HG +K GF G V+V ALL Y S
Sbjct: 101 MIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGS 160
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--------------- 105
+ D+ + F++M ++++++WNSM++ +A G A L + M +
Sbjct: 161 LGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFA 220
Query: 106 ------------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
D+ N ++ Y + G + A FD +P K+ VSW
Sbjct: 221 CSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSW 280
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ A ++ A + F+++ K++I+WN M++ Y++ + E +DL++ MK +
Sbjct: 281 TSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLA 340
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ +VLSAC LG L +G IH DN +L+DMYA+CG ++ ++ +
Sbjct: 341 PDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISL 400
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + K+V WNA+I LA+HG AL M D+ITF+ LLSAC+H GL+
Sbjct: 401 FSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLL 460
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+ G F M + V +EHY CMVDLLGR L +A++LI+ MP P + GALL
Sbjct: 461 EAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLG 520
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH ++IG +V K + +S G ++ +N+ QWE+ R R +M + G+ K
Sbjct: 521 ACRIHGHIQIGKQVIKQLLELEG-MSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKK 579
Query: 442 TAGSSVIEVNGSYHKFLAGGIGHLSN 467
G S IE N + H+ A GIGH S+
Sbjct: 580 NMGVSSIETNSNIHESGAEGIGHESS 605
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 164/376 (43%), Gaps = 53/376 (14%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYAR 119
A ++F+++P+ D +NS++ A+ + A+ L+ M + + + ++ AR
Sbjct: 63 ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122
Query: 120 IGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ V V N+L+ +Y +AG + + F +M+ +NV++WN+M
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ GY ++ E LF+ M+ + D T+ S+L AC+ G+LE G +H + G
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGC 242
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ AL+DMY KCG + + F K+ W +M+ LA AA +
Sbjct: 243 RIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQ 302
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+ + + I++ ++S G E +L++RM+ LLG A
Sbjct: 303 IPEKSI----ISWNAMISCYVQGGRFHEALDLYNRMK-----------------LLGLA- 340
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV--CAKSNYLSDGELMM 413
P E L A+LSAC DL G KM+ C + N+ + G +
Sbjct: 341 ---------------PDEFTLAAVLSACGQLGDLASG----KMIHDCIRDNFHNPGVALF 381
Query: 414 --FANLYASCGQWEEA 427
++YA CGQ + A
Sbjct: 382 NSLLDMYARCGQVDTA 397
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 32/250 (12%)
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD++P D +NSLI AY N+ ++A + + M+ + ++
Sbjct: 58 GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGIL---------- 107
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
P+ T+ +L ACA + + E H G
Sbjct: 108 ---------------------PNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVF 146
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
AL+ YA GS+ S F + ++V WN+MI G A G A L M
Sbjct: 147 VGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQG 206
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ AD+ T + LL ACS G ++ G + S + G L +VD+ G+ L A
Sbjct: 207 LLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVR-GCRIDLILANALVDMYGKCGDLLMA 265
Query: 361 IELIEAMPFE 370
+ MPF+
Sbjct: 266 HTCFDMMPFK 275
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 168/491 (34%), Positives = 259/491 (52%), Gaps = 41/491 (8%)
Query: 10 NY-SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
NY +P LL + L+ L +H Q I +GF H + T L+ +Y D A VF
Sbjct: 51 NYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVF 106
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG-----YARIGKI 123
+ P I WNSM+ A+ Q + A+++ M K ++ I Y+++G +
Sbjct: 107 DSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDL 166
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
AR +FDK+P +DVV+WN++I + + + A +F +M+ ++ ++W TM+ GY +
Sbjct: 167 KRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNG 226
Query: 184 LYIEVVDLFDEMKAGNV------------------------------KPDYLTVTSVLSA 213
++EV++LFD+MK GNV P+ +T SVL A
Sbjct: 227 CFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA 286
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
A L + G H G SN +LIDMYAKCG ++ S ++F + KD W
Sbjct: 287 AAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSW 346
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
NAM+ G A+HG+G A+ L M +S V+ D ++F+ +LSAC HAGLV+EG ++F M
Sbjct: 347 NAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSD 406
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD 393
+ + LEHY CMVDLLGRA L D + I+ MP EP + GALL +C +H ++++G+
Sbjct: 407 KYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGE 466
Query: 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGS 453
VA K + ++ +++YA G+W +A + R+ MND G+ KT G S +E+
Sbjct: 467 -VALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNK 525
Query: 454 YHKFLAGGIGH 464
H F G H
Sbjct: 526 VHAFRVGDKSH 536
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ H ++ +F +L AA L++ G+ H I+ GF + V +L+ MY
Sbjct: 268 MRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQ 327
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D + K+F +M KD ++WN+ML +A G D A+ L LM D SF ++S
Sbjct: 328 LDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSA 387
Query: 117 YARIGKIHSARYIFDKVPAK 136
G + R IF + K
Sbjct: 388 CRHAGLVEEGRKIFHSMSDK 407
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 168/475 (35%), Positives = 264/475 (55%), Gaps = 16/475 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ + +F +L A S+ G + I+ G+ V+TALL MY
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMI-- 114
+ DA +VFEK+ +++++AWN+M+ A+ Q D+A+ + + + ++F ++
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523
Query: 115 ---SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
S +GK +H I D+ N+L+ + N G++ A +F M ++++
Sbjct: 524 CKSSDSLELGKWVHF--LIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLV 581
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WNT++ G+++ D F M+ +KPD +T T +L+ACA+ +L G R+H
Sbjct: 582 SWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALI 641
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
T+ + T LI MY KCGSIE + +VF+K K+V+ W +MI G A HG G AL
Sbjct: 642 TEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEAL 701
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L +M VK D ITF+G LSAC+HAGL++EG F M K+F + ++EHYGCMVDL
Sbjct: 702 ELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDL 760
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDG 409
GRA LL+ A+E I M EP + GALL AC +H ++E+ ++ A K + N +G
Sbjct: 761 FGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPN--DNG 818
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA+ G W+E + R +M D G+VK G S IEV+G H F + H
Sbjct: 819 VFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTH 873
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/450 (24%), Positives = 203/450 (45%), Gaps = 46/450 (10%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G ++ K+G +++ L+ MY A ++F+ M EKD+ +WN +L +
Sbjct: 129 GERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188
Query: 89 CGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVVS 140
G + A KL + M D +F M++ A + R +++ + D+
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+LI + G++ A ++F + ++++TW +M+TG R + + +LF M+ V
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD + S+L AC + +LE G ++H + G + + TA++ MY KCGS+E +LE
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF + ++V W AMI G A HG A +M +S ++ + +TF+ +L ACS
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428
Query: 321 VQEGCELFSR-MEKDFGVTRKLEH-----------------------------YGCMVDL 350
++ G ++ +E +G ++ + M+
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488
Query: 351 LGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
+ D A+ +A+ E P S ++L+ C LE+G V ++ K+ S
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLI-MKAGLES 547
Query: 408 DGELM-MFANLYASCGQWEEANRWRNMMND 436
D + +++ +CG A +N+ ND
Sbjct: 548 DLHVSNALVSMFVNCGDLMSA---KNLFND 574
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 186/418 (44%), Gaps = 51/418 (12%)
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
S RC VF + KD N++L+ + GQ + AM++++ + D + I
Sbjct: 58 SGRCPKGRCVVFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERV---DSSHIQIYRQT 112
Query: 117 YA-------RIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
Y+ + + I++ + D+ WN+LI Y G A ++F M
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMR 172
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
K+V +WN ++ GY++ LY E L ++M +VKPD T S+L+ACA+ +++ G
Sbjct: 173 EKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE 232
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
++ G ++ TALI+M+ KCG I + +VF +D+ W +MI GLA HG
Sbjct: 233 LYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGR 292
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK------------ 333
A L M + V+ D + F+ LL AC+H +++G ++ +RM++
Sbjct: 293 FKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTA 352
Query: 334 ------------------DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPT 372
D R + + M+ + +D A M EP
Sbjct: 353 ILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPN 412
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM-FANLYASCGQWEEANR 429
++L AC L+ G ++ + ++ Y SD + ++YA CG ++A+R
Sbjct: 413 RVTFMSILGACSSPSALKRGQQIQDHII-EAGYGSDDRVRTALLSMYAKCGSLKDAHR 469
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 8/332 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V D +F +L A + G L+ +K G+ ++V TAL+ M+
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGD 261
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I DA KVF+ +P +D++ W SM+ A G+ A L M + V + R
Sbjct: 262 IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRA 321
Query: 121 GKIHSARYIFDKVPAK-DVVSWNSLILA-------YTNAGEMEKAGEMFKKMLVKNVITW 172
A KV A+ V W++ I YT G ME A E+F + +NV++W
Sbjct: 322 CNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSW 381
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+ G+ + E F++M ++P+ +T S+L AC++ +L+ G +I + +
Sbjct: 382 TAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIE 441
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S+ TAL+ MYAKCGS++ + VF K ++V WNAMI H AL
Sbjct: 442 AGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALAT 501
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ +K + TF +L+ C + ++ G
Sbjct: 502 FQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 168/475 (35%), Positives = 264/475 (55%), Gaps = 16/475 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ + +F +L A S+ G + I+ G+ V+TALL MY
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMI-- 114
+ DA +VFEK+ +++++AWN+M+ A+ Q D+A+ + + + ++F ++
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523
Query: 115 ---SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
S +GK +H I D+ N+L+ + N G++ A +F M ++++
Sbjct: 524 CKSSDSLELGKWVHF--LIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLV 581
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WNT++ G+++ D F M+ +KPD +T T +L+ACA+ +L G R+H
Sbjct: 582 SWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALI 641
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
T+ + T LI MY KCGSIE + +VF+K K+V+ W +MI G A HG G AL
Sbjct: 642 TEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEAL 701
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L +M VK D ITF+G LSAC+HAGL++EG F M K+F + ++EHYGCMVDL
Sbjct: 702 ELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDL 760
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDG 409
GRA LL+ A+E I M EP + GALL AC +H ++E+ ++ A K + N +G
Sbjct: 761 FGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPN--DNG 818
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA+ G W+E + R +M D G+VK G S IEV+G H F + H
Sbjct: 819 VFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTH 873
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/450 (24%), Positives = 204/450 (45%), Gaps = 46/450 (10%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G ++ K+G ++++ L+ MY A ++F+ M EKD+ +WN +L +
Sbjct: 129 GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188
Query: 89 CGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVVS 140
G + A KL + M D +F M++ A + R +++ + D+
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+LI + G++ A ++F + ++++TW +M+TG R + + +LF M+ V
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD + S+L AC + +LE G ++H + G + + TA++ MY KCGS+E +LE
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF + ++V W AMI G A HG A +M +S ++ + +TF+ +L ACS
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428
Query: 321 VQEGCELFSR-MEKDFGVTRKLEH-----------------------------YGCMVDL 350
++ G ++ +E +G ++ + M+
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488
Query: 351 LGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
+ D A+ +A+ E P S ++L+ C LE+G V ++ K+ S
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLI-MKAGLES 547
Query: 408 DGELM-MFANLYASCGQWEEANRWRNMMND 436
D + +++ +CG A +N+ ND
Sbjct: 548 DLHVSNALVSMFVNCGDLMSA---KNLFND 574
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 8/332 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V D +F +L A + G L+ +K G+ ++V TAL+ M+
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGD 261
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I DA KVF+ +P +D++ W SM+ A G+ A L M + V + R
Sbjct: 262 IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRA 321
Query: 121 GKIHSARYIFDKVPAK-DVVSWNSLILA-------YTNAGEMEKAGEMFKKMLVKNVITW 172
A KV A+ V W++ I YT G ME A E+F + +NV++W
Sbjct: 322 CNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSW 381
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+ G+ + E F++M ++P+ +T S+L AC++ +L+ G +I + +
Sbjct: 382 TAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIE 441
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S+ TAL+ MYAKCGS++ + VF K ++V WNAMI H AL
Sbjct: 442 AGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALAT 501
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ +K + TF +L+ C + ++ G
Sbjct: 502 FQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 185/418 (44%), Gaps = 51/418 (12%)
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
S RC VF + KD N++L+ + GQ + AM++++ + D + I
Sbjct: 58 SGRCPKGRCVVFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERV---DSSHIQIYRQT 112
Query: 117 YA-------RIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
Y+ + + I++ + D+ N+LI Y G A ++F M
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMR 172
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
K+V +WN ++ GY++ LY E L ++M +VKPD T S+L+ACA+ +++ G
Sbjct: 173 EKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE 232
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
++ G ++ TALI+M+ KCG I + +VF +D+ W +MI GLA HG
Sbjct: 233 LYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGR 292
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK------------ 333
A L M + V+ D + F+ LL AC+H +++G ++ +RM++
Sbjct: 293 FKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTA 352
Query: 334 ------------------DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPT 372
D R + + M+ + +D A M EP
Sbjct: 353 ILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPN 412
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM-FANLYASCGQWEEANR 429
++L AC L+ G ++ + ++ Y SD + ++YA CG ++A+R
Sbjct: 413 RVTFMSILGACSSPSALKRGQQIQDHII-EAGYGSDDRVRTALLSMYAKCGSLKDAHR 469
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 158/443 (35%), Positives = 245/443 (55%), Gaps = 33/443 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+DDA K+F+ MPEKD++A +M+ + G++D A L D MP ++V ++ M+SGYAR
Sbjct: 164 VDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARN 223
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI---------- 170
GK+ AR +F+ +P ++ VSW +++L YT++G M +A +F M VK V+
Sbjct: 224 GKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFG 283
Query: 171 ---------------------TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
TW+ M+ Y R +E + LF M+ + ++ ++ S
Sbjct: 284 LNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLIS 343
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
VLS C +L SL+ G ++H + + + + LI MY KCG++ ++ +VF + +KD
Sbjct: 344 VLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKD 403
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V WN+MI G + HG G AL + +M S V DD+TFIG+LSACS++G V+EG ELF
Sbjct: 404 VVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFE 463
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M+ + V +EHY C+VDLLGRA ++ A++L+E MP EP + GALL AC H L
Sbjct: 464 TMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKL 523
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
++ + VA A+ + G ++ +N+YA G+W + R + + K G S IE
Sbjct: 524 DLAE-VAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIE 582
Query: 450 VNGSYHKFLAG-GIGHLSNLLTM 471
V H F G GH + M
Sbjct: 583 VEKKVHMFTGGDSKGHPEQPIIM 605
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 12/286 (4%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y R +A +FEKMP+++ ++WN ++ G + A ++ D MP ++V
Sbjct: 59 NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVV 118
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+ M+ GY R G + A +F +P K+VVSW ++ G ++ A ++F M K+
Sbjct: 119 SWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKD 178
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+ M+ GY E LFDEM NV +T T+++S A G ++ ++
Sbjct: 179 VVAVTNMIGGYCEEGRLDEARALFDEMPKRNV----VTWTAMVSGYARNGKVDVARKLFE 234
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ N + TA++ Y G + ++ +F VK V N MI+G L+G
Sbjct: 235 VMPER----NEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDK 290
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
A ++ M + D+ T+ ++ G E LF RM+++
Sbjct: 291 ARRVFKGMKER----DNGTWSAMIKVYERKGYELEALGLFRRMQRE 332
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 136/272 (50%), Gaps = 10/272 (3%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +A +VF+ MP++++++W SM+ + G + A +L MP K+V S+ +M+ G +
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQE 161
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G++ AR +FD +P KDVV+ ++I Y G +++A +F +M +NV+TW MV+GY
Sbjct: 162 GRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYA 221
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R+ LF+ M N ++ T++L LG +G + + + P
Sbjct: 222 RNGKVDVARKLFEVMPERN----EVSWTAML-----LGYTHSGRMREASSLFDAMPVKPV 272
Query: 241 AT-TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+I + G ++++ VF + +D W+AMI GY AL L M
Sbjct: 273 VVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQRE 332
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
+ + + I +LS C + G ++ +++
Sbjct: 333 GLALNFPSLISVLSVCVSLASLDHGKQVHAQL 364
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 126/248 (50%), Gaps = 14/248 (5%)
Query: 86 FASCGQMDHAMKLIDLMPL--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
+A GQ+DHA K+ D PL + V+S+N M++ Y + A +F+K+P ++ VSWN
Sbjct: 32 YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNG 91
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI + G + +A +F M +NV++W +MV GY+R+ E LF M NV
Sbjct: 92 LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV--- 148
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
++ T +L G ++ ++ + + A T +I Y + G ++++ +F
Sbjct: 149 -VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVV----AVTNMIGGYCEEGRLDEARALFD 203
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ ++V W AM+ G A +G A KL M + +++++ +L +H+G ++E
Sbjct: 204 EMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSGRMRE 259
Query: 324 GCELFSRM 331
LF M
Sbjct: 260 ASSLFDAM 267
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 100/205 (48%), Gaps = 17/205 (8%)
Query: 12 SFPLLLKAAGI---LSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
+FP L+ + L+S G +H Q +++ F +YV + L+ MY + A +VF
Sbjct: 337 NFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVF 396
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYARIGKI 123
+ P KD++ WNSM+ ++ G + A+ + M P DVT + +S + GK+
Sbjct: 397 NRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGV-LSACSYSGKV 455
Query: 124 HSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVT 177
+F+ + K V + L+ A ++ +A ++ +KM ++ + I W ++
Sbjct: 456 KEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALL- 514
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKP 202
G R+ + +++ ++ E K ++P
Sbjct: 515 GACRTHMKLDLAEVAVE-KLAQLEP 538
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 161/455 (35%), Positives = 255/455 (56%), Gaps = 35/455 (7%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D++SF ++KAA L S +G+ LH Q + G H++V T L+ MYG
Sbjct: 104 PDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGE---------- 153
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
CG + A K+ D MP + ++N M++ R G + R
Sbjct: 154 ---------------------CGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGR 192
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD +P ++++SWN ++ YT AGE+E A EMF +M +K+ ++W+TM+ G+ + + E
Sbjct: 193 ELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEE 252
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
F E++ ++P+ ++T VLSACA G+LE G +H + +GLA AL+D
Sbjct: 253 AFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLD 312
Query: 248 MYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
Y+KCG++ + VF + +++ W +M+ LA+HG+G A+ + +M +S ++ D+I
Sbjct: 313 TYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEI 372
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
FI LL ACSHAGLV++GCE F +M+ + + +EHYGCMVDL GRA L +A E +
Sbjct: 373 AFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQ 432
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA-KSNYLSDGELMMFANLYASCGQWE 425
MP T I LL AC +H D+++ ++V + + N SD L+ +N YA G+W+
Sbjct: 433 MPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLL--SNAYAVAGKWK 490
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+A R M + I KT G S+IEV+ + FLAG
Sbjct: 491 DAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAG 525
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 17/245 (6%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPDYLTVTSVLS 212
++ A +F+ +V NT++ G S + + F EM+ + PD + ++
Sbjct: 55 LDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVK 114
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
A ANL S+ G ++H A +GL ++ T LI MY +CG + + +VF + +
Sbjct: 115 AAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIA 174
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WNAM+ G +K E+ D + +++ +L+ + AG ++ E+F M
Sbjct: 175 WNAMVTACCRGG----DMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMP 230
Query: 333 KDFGVTRK-----LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
V+ H G + R L R P E+ L +LSAC
Sbjct: 231 MKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRK-------GMRPNETSLTGVLSACAQAG 283
Query: 388 DLEIG 392
LE G
Sbjct: 284 ALEFG 288
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 110/261 (42%), Gaps = 18/261 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q G+ + S +L A + G +LHG K+G V V ALL Y
Sbjct: 260 LQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGN 319
Query: 61 IDDAFKVFEK-MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMIS 115
+ A VFE+ M E++I++W SM+ A A G + A+ + M D +F ++
Sbjct: 320 VLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLY 379
Query: 116 GYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
+ G + FDK+ + + ++ Y AG+++KA E +M +
Sbjct: 380 ACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTA 439
Query: 170 ITWNTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
I W T++ + +L +V + E+ N D++ ++ +A A G + A +
Sbjct: 440 IIWRTLLGACSMHGDVKLAEQVKERLSELDPNN-SSDHVLLS---NAYAVAGKWKDAASV 495
Query: 227 HVYATDNGLASNPHATTALID 247
T+ + P + +D
Sbjct: 496 RRSMTEQRITKTPGWSMIEVD 516
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 167/476 (35%), Positives = 265/476 (55%), Gaps = 16/476 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D+++FP LLKA G LS +G +H Q + GF V+VQ L+ +Y R
Sbjct: 110 MQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRR 169
Query: 61 IDDAFKVFE--KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MI 114
+ A VFE +PE+ I++W +++ A+A G+ A+++ M DV + ++
Sbjct: 170 LGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVL 229
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVI 170
+ + + + R I V + + L+++ Y G++ A +F KM N+I
Sbjct: 230 NAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M++GY ++ + +DLF EM +V+PD +++TS +SACA +GSLE + Y
Sbjct: 290 LWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYV 349
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ + + ++ALIDM+AKCGS+E + VF ++ +DV W+AMI+G LHG A+
Sbjct: 350 SRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAI 409
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L M V +D+TF+GLL AC+H+G+V+EG F+RM D + + +HY C++DL
Sbjct: 410 SLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRM-ADHKINPQQQHYACIIDL 468
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA--KSNYLSD 408
LGRA LD+A E+I+ MP +P ++ GALLSAC H+ +E+G A+ + + SN
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSN---T 525
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G + +NLYA+ W+ R M + G+ K G S +EV G F G H
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSH 581
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 158/333 (47%), Gaps = 20/333 (6%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLML---HGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
G+H+D++ A ++ SS L H + + G ++ T L+ S I
Sbjct: 17 GIHSDSFY-------ASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDI 69
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGY 117
A +VF+ +P + WN+++ ++ A+ + M L V+ +F ++
Sbjct: 70 TFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKAC 129
Query: 118 ARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--KNVIT 171
+ + R++ +V DV N LI Y + A +F+ + + + +++
Sbjct: 130 GGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVS 189
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W +V+ Y ++ +E +++F +M+ +VKPD + + SVL+A L LE G IH
Sbjct: 190 WTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVM 249
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
GL + P +L MYAKCG + + +F K + ++ WNAMI G A +G+ A+
Sbjct: 250 KMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAID 309
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
L EM + V+ D I+ +SAC+ G +++
Sbjct: 310 LFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 93/235 (39%), Gaps = 37/235 (15%)
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+IH GL + T LI + G I + +VF VF WNA+I G + +
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNN 98
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-----EKDFGVTR 339
+ AL + +M + V D TF LL AC +Q G + +++ E D V
Sbjct: 99 HFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQN 158
Query: 340 -------KLEHYGCMVDLLGRARLLDRAI--------------ELIEA---------MPF 369
K GC + L +R I E +EA M
Sbjct: 159 GLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDV 218
Query: 370 EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN-LYASCGQ 423
+P L ++L+A QDLE G + V K ++ +L++ N +YA CGQ
Sbjct: 219 KPDCVALVSVLNAFTCLQDLEQGRSIHASV-MKMGLETEPDLLISLNTMYAKCGQ 272
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 187/568 (32%), Positives = 282/568 (49%), Gaps = 109/568 (19%)
Query: 4 LGVHA--DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY------ 55
L HA D+Y++P+LL+ S G LH + +GF G VYV+ L+ +Y
Sbjct: 97 LASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSV 156
Query: 56 GSLRCI-------------------------DDAFKVFEKMPEK---------------- 74
GS R + ++A +VFE MPE+
Sbjct: 157 GSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKG 216
Query: 75 -----------------DIIAWNSMLDAFASCGQMDHAMKLIDLMP-------------- 103
D+++W++M+ + + A+ L M
Sbjct: 217 CVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSA 276
Query: 104 ------------------------LKDVTSF-NIMISGYARIGKIHSARYIFDKV-PAKD 137
++D S N +I Y+ G+I AR IFD D
Sbjct: 277 LSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLD 336
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
++SWNS+I Y G ++ A +F M K+V++W+ M++GY + + + E + LF EM+
Sbjct: 337 LISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQL 396
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V+PD + S +SAC +L +L+ G IH Y + N L N +T LIDMY KCG +E
Sbjct: 397 HGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVEN 456
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+LEVFY + K V WNA+ILGLA++G +L + +M + ++ITF+G+L AC H
Sbjct: 457 ALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRH 516
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
GLV +G F+ M + + ++HYGCMVDLLGRA LL A ELI++MP P + G
Sbjct: 517 MGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWG 576
Query: 378 ALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
ALL AC H+D E+G+R+ K++ + ++ DG ++ +N+YAS G W R +M
Sbjct: 577 ALLGACRKHRDNEMGERLGRKLIQLQPDH--DGFHVLLSNIYASKGNWGNVLEIRGIMAQ 634
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+VKT G S+IE NG+ H+FLAG H
Sbjct: 635 HGVVKTPGCSMIEANGTVHEFLAGDKTH 662
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 23/281 (8%)
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYI-----EVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+F + N TWNT+ +R+ LY+ + + + A + KPD T +L
Sbjct: 59 RIFNHLRNPNTFTWNTI----MRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQC 114
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
CA S G ++H +A +G + + L+++YA CGS+ + VF +S V D+ W
Sbjct: 115 CAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSW 174
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
N ++ G G A ++ M + A + +++ G V++ +F+ +
Sbjct: 175 NTLLAGYVQAGEVEEAERVFEGMPERNTIASN----SMIALFGRKGCVEKARRIFNGVR- 229
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLE 390
G R + + MV + + + A+ L M E ++ + LSAC ++E
Sbjct: 230 --GRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVE 287
Query: 391 IGDRVAKMV--CAKSNYLSDGELMMFANLYASCGQWEEANR 429
+G V + +Y+S ++ +LY+SCG+ +A R
Sbjct: 288 MGRWVHGLAVKVGVEDYVSLKNALI--HLYSSCGEIVDARR 326
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 33/230 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + + A L++ +G +H + +V + T L+ MY C
Sbjct: 394 MQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGC 453
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
+++A +VF M EK + WN+++ A G ++ ++ + M + + +F ++
Sbjct: 454 VENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGA 513
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+G ++ R+ F NS+I + + N+ + MV
Sbjct: 514 CRHMGLVNDGRHYF-----------NSMI---------------HEHKIEANIKHYGCMV 547
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
R+ L E +L D M + PD T ++L AC E G R+
Sbjct: 548 DLLGRAGLLKEAEELIDSMP---MAPDVATWGALLGACRKHRDNEMGERL 594
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 224/354 (63%), Gaps = 1/354 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N++++ Y G++ A +F+K+P +D V+WN +I G+++ A F +M KNV
Sbjct: 49 NMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVR 108
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +M++G+++ E +DLF +++ V+P+ +TV SVL+ACA+LG L+ G +H Y+
Sbjct: 109 SWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYS 168
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
T +G N H LIDMY KCG +E + VFY+ + + V W+AMI GLA+HG AL
Sbjct: 169 TKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEAL 228
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L EM VK + +TFIGLL ACSH GL+ EG F+ M D+GV ++EHYGC+VDL
Sbjct: 229 CLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDL 288
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
RA LL+ A E I +MP +P + GALL C +H+++++ + K + ++ + L+DG
Sbjct: 289 FSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHL-SELDPLNDGY 347
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA +WE+A R R +M D G+ KT+G S I VNG H+F+AG H
Sbjct: 348 YVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTH 401
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 155/341 (45%), Gaps = 44/341 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D ++ +LKA LS G +HG K GF ++++Q +L +YG
Sbjct: 1 MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA +FEKMP++D + WN ++ A G +D A MP K+V S+ MISG+ +
Sbjct: 61 MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120
Query: 121 GKIHSARYIFDKVP---------------------------------------AKDVVSW 141
GK + A +F K+ ++V
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y G +E A +F +M + V++W+ M+ G E + LF EM VK
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVK 240
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYAT-DNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T +L AC+++G ++ G R T D G+ ++D++++ G +E++ E
Sbjct: 241 PNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHE 300
Query: 261 VFYKSQVK-DVFCWNAMILGLALH---GYGYAALKLLGEMN 297
+K + W A++ G +H A+K L E++
Sbjct: 301 FILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELD 341
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 39/247 (15%)
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M+ +V PD T + VL AC L + G IH G SN ++++Y CG
Sbjct: 1 MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ ++ +F K +D WN +I LA G A M + V+ ++ ++S
Sbjct: 61 MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVR----SWTSMISG 116
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
G E +LF ++E D A+ P E
Sbjct: 117 FVQCGKPNEAIDLFMKLE-------------------------DEAV--------RPNEV 143
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNM 433
+ ++L+AC DL++G R+ KS + + + ++Y CG E A R
Sbjct: 144 TVVSVLAACADLGDLDLG-RIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYE 202
Query: 434 MNDTGIV 440
M + +V
Sbjct: 203 MEERTVV 209
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 161/445 (36%), Positives = 245/445 (55%), Gaps = 2/445 (0%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLRCIDDA 64
V D++S P L AA L +G LH ++ + V AL+ +Y + A
Sbjct: 77 VSPDHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCDDLPAA 136
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+ D +++NS+L A A + A L MP + S+N M+ Y G +
Sbjct: 137 HTALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVS 196
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SAR +FD++P +D SW+ LI+ Y G M A E+F +M KN++ W M+ GY +S +
Sbjct: 197 SARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGV 256
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E + LF EM+A ++PD T+ V+SA + +GS E + Y + N TA
Sbjct: 257 PKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTA 316
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DM+AKCG+++++L F + D + + A+I GLA HG+ AL++ M V D
Sbjct: 317 LVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPD 376
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITF+G+L+ACSHAGLV +G + + M K +G+ R+ +HY C+VD+LGRA L+ A E++
Sbjct: 377 PITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMV 436
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
+ MP P LGALLSAC H ++EI + VA + + + G +M +N+YA QW
Sbjct: 437 QTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPH-NTGNYIMLSNIYAEKEQW 495
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIE 449
EEA R R++M K GSS +E
Sbjct: 496 EEAERIRSVMRTRLPFKQPGSSWVE 520
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 169/474 (35%), Positives = 264/474 (55%), Gaps = 14/474 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ + +F +L A S+ G +H + IK G+ V+TALL MY
Sbjct: 398 MIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGS 457
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMIS 115
+ DA VFE++ +++++AWN+M+ A+ + D+A+ + LK D ++F +++
Sbjct: 458 LMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQAL-LKEGIKPDSSTFTSILN 516
Query: 116 GYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ +++ + D+ N+L+ + N G++ A +F M +++++
Sbjct: 517 VCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVS 576
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WNT++ G+++ D F M+ VKPD +T T +L+ACA+ +L G R+H T
Sbjct: 577 WNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALIT 636
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ L + T LI MY KCGSI+ + VF+ K+V+ W +MI G A HG G AL+
Sbjct: 637 EAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALE 696
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M VK D ITF+G LSAC+HAGL++EG F M KDF + ++EHYGCMVDL
Sbjct: 697 LFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLF 755
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGE 410
GRA LL A+E I M +P + GALL AC +H D+E+ ++VA K + N DG
Sbjct: 756 GRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPN--DDGV 813
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA+ G W+E + R +M D G+VK G S IEV+G H F + H
Sbjct: 814 YVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTH 867
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/473 (24%), Positives = 211/473 (44%), Gaps = 87/473 (18%)
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F K+ + DI WN ++ +A CG + A ++ D MP KDV S+N+++ GY + + A
Sbjct: 132 FSKI-QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAF 190
Query: 128 YIFDKV--------------------PAKDV------------VSWNS-------LILAY 148
+ +++ AK+V W++ LI +
Sbjct: 191 RLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMH 250
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G ++ A ++F + +++ITW +M+TG R + + + +LF M+ V+PD +
Sbjct: 251 IKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFV 310
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
S+L AC + +LE G R+H + GL + + TAL+ MY KCGS+E +LEVF + +
Sbjct: 311 SLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR 370
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+V W AMI G A HG A +M +S ++ + +TF+ +L ACS +++G ++
Sbjct: 371 NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIH 430
Query: 329 SRMEKDFGVT------------------------------RKLEHYGCMVDLLGRARLLD 358
R+ K +T + + + M+ + D
Sbjct: 431 DRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYD 490
Query: 359 RAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MF 414
A+ +A+ E P S ++L+ C LE+G V ++ ++ + SD +
Sbjct: 491 NAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLII-RAGFESDLHIRNAL 549
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
+++ +CG A N M + +V S++ +AG + H N
Sbjct: 550 VSMFVNCGDLMSAMNLFNDMPERDLV------------SWNTIIAGFVQHGEN 590
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 151/332 (45%), Gaps = 8/332 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + GV D Y+F +L A + G L + G+ ++V TAL+ M+
Sbjct: 196 MVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGG 255
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+DDA KVF +P +D+I W SM+ A Q A L +M + V + +
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKA 315
Query: 121 GKIHSARYIFDKVPAK--------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +V A+ ++ +L+ YT G ME A E+F + +NV++W
Sbjct: 316 CNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSW 375
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+ G+ + E F++M ++P+ +T S+L AC+ +L+ G +IH
Sbjct: 376 TAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIK 435
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G ++ TAL+ MYAKCGS+ + VF + ++V WNAMI H A+
Sbjct: 436 AGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVAT 495
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ +K D TF +L+ C ++ G
Sbjct: 496 FQALLKEGIKPDSSTFTSILNVCKSPDALELG 527
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 116/272 (42%), Gaps = 41/272 (15%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T +S+L C +L G RIH + + + + LI MYAKCG+ + ++F +
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
KDV+ WN ++ G H A +L +M VK D TF+ +L+AC+ A V +G
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGG 225
Query: 326 ELFSRM-----EKDFGV-------------------------TRKLEHYGCMVDLLGRAR 355
ELFS + + D V R L + M+ L R R
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHR 285
Query: 356 LLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGEL 411
+A L + M E P + +LL AC + LE G RV A+M D E+
Sbjct: 286 QFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM----KEVGLDTEI 341
Query: 412 MM---FANLYASCGQWEEANRWRNMMNDTGIV 440
+ ++Y CG E+A N++ +V
Sbjct: 342 YVGTALLSMYTKCGSMEDALEVFNLVKGRNVV 373
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 155/447 (34%), Positives = 250/447 (55%), Gaps = 42/447 (9%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y IDDA+K+F +MPEKD ++W +M++ + G++ A ++++LMP K++
Sbjct: 268 NAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIA 327
Query: 109 S-------------------------------FNIMISGYARIGKIHSARYIFDKVPAKD 137
+ +N MI+GYA G+ A +F ++ KD
Sbjct: 328 AQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKD 387
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
+VSWN++I AY AG+M+KA EMF +M +NV++WN+++TGY+++ LY E ++ F MK
Sbjct: 388 MVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQ 447
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KPD T+ L A ANL +L G ++H G ++ A++ MYAK G + +
Sbjct: 448 QGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPE 507
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ VF + + KDV WN++I G AL+G G A++L M + D++TF GLLSAC+H
Sbjct: 508 AENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNH 567
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
G V +G LF M + + + + EHY C+++LLGR L+ A+E+++ M + I G
Sbjct: 568 GGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWG 627
Query: 378 ALLSACVIHQDLEIGDRVAKMVCA-----KSNYLSDGELMMFANLYASCGQWEEANRWRN 432
ALL AC IH +LE+ A+ + A SNY+ + +N++A G+W+ R R
Sbjct: 628 ALLWACRIHHNLELAKYSAERLLALEPQNASNYV------LLSNMHAEAGRWDMVERVRV 681
Query: 433 MMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+M + K G S IE++ H FL+
Sbjct: 682 LMKENKAEKQPGCSWIEIDNQLHCFLS 708
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 158/286 (55%), Gaps = 12/286 (4%)
Query: 48 QTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV 107
+ AL+ Y R +A K+F++M K++++WNS+L + G+M ++ + M ++V
Sbjct: 143 RNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNV 202
Query: 108 TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
S+N+M+ GY +G + SA F K+P +VVSW +++ + + G M +A +F +M K
Sbjct: 203 VSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK 262
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N+++WN M+ Y+R + LF EM + D ++ T++++ +G L I
Sbjct: 263 NLVSWNAMIGAYVRENQIDDAYKLFMEMP----EKDSVSWTAMINGYVRVGKLLQAREIL 318
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+A A TA+I+ Y + G ++++ E+F + V+D CWN+MI G A G
Sbjct: 319 NLMPYKNIA----AQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTD 374
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
AL+L EM V D +++ +++A + AG + + E+F+ M++
Sbjct: 375 EALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQE 416
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 187/390 (47%), Gaps = 29/390 (7%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V+ Q + G I++A VF +M E++I+ +NSM+ A+A G++ +A +L DLMP
Sbjct: 14 YVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMP 73
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+++ S+N MI+GY + A +FD++ +D+ SW +I YT GE+EKA E+F
Sbjct: 74 QRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNL 133
Query: 164 MLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+ K + + N ++ GY + +L+ E LFDEM NV ++ S+LS G ++
Sbjct: 134 LPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNV----VSWNSILSGYTKNGKMQL 189
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G + + + S ++D Y G ++ + F K +V W M+ G A
Sbjct: 190 GLQFFEAMGERNVVS----WNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAH 245
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
+G A L EM + +++ ++ A + + +LF M + V+
Sbjct: 246 YGRMTEARNLFNEMPTKNL----VSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVS---- 297
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMV 399
+ M++ R L +A E++ MP++ +++ L + + + EI +++
Sbjct: 298 -WTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRD 356
Query: 400 CAKSNYLSDGELMMFANLYASCGQWEEANR 429
N + G YA CG+ +EA R
Sbjct: 357 SVCWNSMITG--------YAHCGRTDEALR 378
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 67/116 (57%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G D + L+A+ L++ +G+ LH TIKTGF ++V+ A+L MY
Sbjct: 445 MKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGR 504
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+ +A VF ++ KD+++WNS++ +A G A++L ++MPL+ + + +G
Sbjct: 505 VPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTG 560
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 118/298 (39%), Gaps = 76/298 (25%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C + ++ Y +D A ++F +M E+++++WNS++ + G A+ L
Sbjct: 385 CKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFIL 444
Query: 102 MPLK---------------------------------------DVTSFNIMISGYARIGK 122
M + D+ N +++ YA+ G+
Sbjct: 445 MKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGR 504
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ A +F ++ KDVVSWNSLI Y G ++A E+F+ M ++ +I
Sbjct: 505 VPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGII------------ 552
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHA 241
PD +T T +LSAC + G ++ G + T+ +
Sbjct: 553 -------------------PDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEH 593
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQ-VKDVFCWNAMILGLALHGY----GYAALKLLG 294
+I++ + G +E+++E+ + V W A++ +H Y+A +LL
Sbjct: 594 YACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLA 651
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 221/355 (62%), Gaps = 3/355 (0%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D+ + ++ YA++G + SAR +FD++P +D+ +WNSLI Y +G ME A E+F KM
Sbjct: 116 DMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMP 175
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLETGA 224
V+NVI+W +++GY ++ Y + +++F ++ KP+ +++ SVL AC+ LG+L+ G
Sbjct: 176 VRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGK 235
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC-WNAMILGLALH 283
RI YA +NG N + + A+++++A+CG+IE++ +VF + K C WN MI+GLA+H
Sbjct: 236 RIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVH 295
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G AL+L +M ++ DD+TF+GLL AC+H G+V EG +LF ME F V KLEH
Sbjct: 296 GRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEH 355
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
YGC+VDLLGRA L A LI+ MP P I G LL AC H ++E+G+ VA K
Sbjct: 356 YGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGE-VAAESLFKL 414
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ G ++ +N+YA G W R R MM I K AG S IEV H+F+
Sbjct: 415 EPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFI 469
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 43/323 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + YSF L A L + G MLH K+GF ++ TALL MY L + A
Sbjct: 77 GCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSA 136
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
++F++MP +DI WNS++ +A G M+ A++L + MP+++V S+ +ISGYA+ GK
Sbjct: 137 RQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYA 196
Query: 125 SARYIF-----------------DKVPA-----------------------KDVVSWNSL 144
A +F +PA K+ N++
Sbjct: 197 KALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAV 256
Query: 145 ILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+ + G +E+A ++F ++ K N+ +WNTM+ G I+ + L+D+M ++PD
Sbjct: 257 LELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPD 316
Query: 204 YLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T +L AC + G + G ++ + +A L+D+ + G ++++ +
Sbjct: 317 DVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLI 376
Query: 263 YK-SQVKDVFCWNAMILGLALHG 284
D W ++ + HG
Sbjct: 377 QNMPMAPDSVIWGTLLGACSFHG 399
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 77/328 (23%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D T F +I ++ + A +FD++P V +N I +++ G +
Sbjct: 17 DHTKF--LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRC-------- 66
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
W L+ +M + P+ + T + ACA+L ++ G
Sbjct: 67 ------W-----------------LLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQM 103
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H + +G AS+ A TAL+DMYAK G + + ++F + V+D+ WN++I G A G+
Sbjct: 104 LHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGH 163
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
AAL+L +M V I++ L+S + G + E+F +E + G
Sbjct: 164 MEAALELFNKMPVRNV----ISWTALISGYAQNGKYAKALEMFIGLENEKGT-------- 211
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV----CA 401
+P E + ++L AC L+IG R+
Sbjct: 212 ------------------------KPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFF 247
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANR 429
K+ Y+S+ L L+A CG EEA +
Sbjct: 248 KNAYVSNAVL----ELHARCGNIEEAQQ 271
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 89/185 (48%), Gaps = 11/185 (5%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E G + S +L A L + IG + GF + YV A+L+++ I+
Sbjct: 208 EKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIE 267
Query: 63 DAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY---- 117
+A +VF+++ ++++ +WN+M+ A G+ A++L D M ++ + ++ G
Sbjct: 268 EAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLAC 327
Query: 118 ARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKM-LVKNVIT 171
G + R +F+ + +K V+ + L+ AGE+++A + + M + + +
Sbjct: 328 THGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVI 387
Query: 172 WNTMV 176
W T++
Sbjct: 388 WGTLL 392
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 236/398 (59%), Gaps = 3/398 (0%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
D A ++F MP +D+++WN+M+ + G ++ A + MP+++ S+N M+SG+A
Sbjct: 146 DGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSR 205
Query: 122 KIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ +A F P K D V W +++ Y + G + KA E F+ M V+N+++WN +V GY+
Sbjct: 206 DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 265
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ + + LF M + NV+P+ T++SVL C+NL +L G +IH + L+ N
Sbjct: 266 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNL 325
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
T+L+ MY KCG + + ++F + +DV WNAMI G A HG G A+ L M D
Sbjct: 326 TVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 385
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V+ + ITF+ +L+AC H GL G F M++ +G+ +++HY CMVDLL RA L+R
Sbjct: 386 GVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 445
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A++LI +MPFEP S G LL+AC ++++LE + A + K + S G + AN+YA
Sbjct: 446 AVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK-DPQSAGAYVQLANIYA 504
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
QW++ +R R M D +VKT G S IE+ G H+F
Sbjct: 505 GANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEF 542
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 120/230 (52%), Gaps = 10/230 (4%)
Query: 43 GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
G + TA++ Y + + A + FE MP +++++WN+++ + D A++L M
Sbjct: 221 GDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM 280
Query: 103 PLK-----DVTSFNIMISGYARIGKIHSARYIFD---KVP-AKDVVSWNSLILAYTNAGE 153
+ + ++ + ++ G + + + + I K+P ++++ SL+ Y G+
Sbjct: 281 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 340
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+ A ++F +M ++V+ WN M++GY + E ++LF+ MK V+P+++T +VL+A
Sbjct: 341 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 400
Query: 214 CANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEVF 262
C + G + G R + G+ + ++D+ + G +E+++++
Sbjct: 401 CIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLI 450
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 120/303 (39%), Gaps = 25/303 (8%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI-EVVDLFDEMKAGNVKPD 203
+ A G++ A E F K T+N ++ GY R+ + + LFD + PD
Sbjct: 73 VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT----PD 128
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
++ ++LS G + R+ + S ++ +K G++E++ VF
Sbjct: 129 AVSYNTLLSCHFASGDADGARRLFASMPVRDVVS----WNTMVSGLSKSGAVEEAKAVFL 184
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
V++ WNAM+ G A AA + ++ K D + + ++S G V +
Sbjct: 185 AMPVRNSVSWNAMVSGFACSRDMSAAEEWF---RNAPEKGDAVLWTAMVSGYMDIGNVVK 241
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE----PTESILGAL 379
E F M R L + +V + D A+ L M E P S L ++
Sbjct: 242 AIEYFEAMP-----VRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSV 296
Query: 380 LSACVIHQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
L C L G ++ + M S L+ G ++ ++Y CG A + M+
Sbjct: 297 LLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLV--SMYCKCGDLSSACKLFGEMHTR 354
Query: 438 GIV 440
+V
Sbjct: 355 DVV 357
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E V + + +L LS+ G +H +K ++ V T+L+ MY
Sbjct: 281 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 340
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
+ A K+F +M +D++AWN+M+ +A G A+ L + M
Sbjct: 341 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERM 382
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 168/472 (35%), Positives = 266/472 (56%), Gaps = 10/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D +SFP +LKA L + +G +HGQ + GF V+VQ L+ +Y
Sbjct: 164 MQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGE 223
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
I A VF ++ ++ I++W S++ +A GQ A+++ M +V I ++
Sbjct: 224 IVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRA 283
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVITW 172
Y + + + I V + L+++ Y G + A F ++ ++I W
Sbjct: 284 YTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFW 343
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M++GY+++ E ++LF MK+ N++PD +TVTS ++ACA +GSLE + Y +
Sbjct: 344 NAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISM 403
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ ++ T+LID YAKCGS++ + VF + KDV W+AM++G LHG G ++ L
Sbjct: 404 SEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIIL 463
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M + V +D+TF+GLL+AC ++GLV+EG +LF RM +D+G+ + +HY C+VDLLG
Sbjct: 464 FHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLG 522
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LDRA + MP EP S+ GALLSAC IH+ + +G+ A+ + + Y + G +
Sbjct: 523 RAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPY-NTGHYV 581
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+NLYAS W+ + R +M + G+ K G SVIE+NG F AG H
Sbjct: 582 QLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTH 633
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 139/275 (50%), Gaps = 11/275 (4%)
Query: 56 GSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFN 111
G + C A K+F+K P+ D+ WN+++ ++ G HA+++ M + V+ SF
Sbjct: 121 GEVSC---ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFP 177
Query: 112 IMISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
++ + + + R IF DV N L+ Y GE+ +A +F +++ +
Sbjct: 178 CVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR 237
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+++W ++++GY ++ IE + +F EM+ NV+PD++ + SVL A ++ LE G IH
Sbjct: 238 TIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIH 297
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
GL +L +YAKCG + + F + + + WNAMI G +GY
Sbjct: 298 GCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAE 357
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
A++L M ++ D IT ++AC+ G ++
Sbjct: 358 EAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLE 392
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ +N GE+ A ++F K +V WN +V Y R + ++++ M+ V PD
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ VL AC+ L +LE G R+H +G S+ L+ +YAKCG I ++ VF
Sbjct: 173 GFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG 232
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ + + W ++I G A +G AL++ EM + V+ D I + +L A + ++
Sbjct: 233 RLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEH 292
Query: 324 G 324
G
Sbjct: 293 G 293
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 33/229 (14%)
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L++ + G + + ++F K DVF WNA++ + HG+ A+++ M +CV D
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRM-----EKDFGVTRKLEHYGCMVDLLGRA----- 354
+F +L ACS ++ G + ++ E D V L + RA
Sbjct: 173 GFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG 232
Query: 355 RLLDRAI--------------ELIEAMPF---------EPTESILGALLSACVIHQDLEI 391
RL+DR I + IEA+ P L ++L A +DLE
Sbjct: 233 RLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEH 292
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
G + V L+ +LYA CG A + N + + ++
Sbjct: 293 GKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLI 341
>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Glycine max]
Length = 576
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 161/451 (35%), Positives = 253/451 (56%), Gaps = 35/451 (7%)
Query: 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI 76
LK+ + G+ +HGQ GF VYVQTALL +Y + + A KVF++M K +
Sbjct: 111 LKSCARIHDMLCGMSIHGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSV 170
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK 136
++WNS+L + G +D A L +P KDV S+N MISGYA+ G + A +F ++P +
Sbjct: 171 VSWNSLLSGYVKAGNLDEAQYLFSEIPGKDVISWNSMISGYAKAGNVGQACTLFQRMPER 230
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
++ SWN++I + + G + A E F M +N ++W TM+ GY + LFD+M
Sbjct: 231 NLSSWNAMIAGFIDCGSLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMD 290
Query: 197 AGN---------------------------------VKPDYLTVTSVLSACANLGSLETG 223
+ V PD +T+ SV+SAC+ LG LE
Sbjct: 291 HKDLLSYNAMIACYAQNSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHW 350
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
I + D G+ + H TALID+YAKCGSI+++ E+F+ + +D+ ++AMI G ++
Sbjct: 351 WWIESHMNDFGIVLDDHLATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGIN 410
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G A+KL +M C+ + +T+ GLL+A +HAGLV++G + F+ M KD+G+ ++H
Sbjct: 411 GKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSM-KDYGLVPSIDH 469
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
YG MVDL GRA LD A +LI MP +P + GALL AC +H ++E+G+ +A C K
Sbjct: 470 YGIMVDLFGRAGYLDEAYKLILNMPMQPNAGVWGALLLACRLHNNVELGE-IAVQHCIKL 528
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMM 434
+ G + +++YA+ +W++A + R M
Sbjct: 529 ETDTTGYCSLLSSIYATVEKWDDAKKLRKGM 559
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 9/212 (4%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A M + + + +W ++ + + L+ E V L+ +M ++ P V+S L +CA
Sbjct: 57 AYSMLHHLHIPDSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTSLCPTSHAVSSALKSCAR 116
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
+ + G IH G + + TAL+D+Y+K G + + +VF + K V WN++
Sbjct: 117 IHDMLCGMSIHGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSVVSWNSL 176
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
+ G G A L E+ D I++ ++S + AG V + C LF RM +
Sbjct: 177 LSGYVKAGNLDEAQYLFSEIPGK----DVISWNSMISGYAKAGNVGQACTLFQRMPE--- 229
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
R L + M+ L A E + MP
Sbjct: 230 --RNLSSWNAMIAGFIDCGSLVSAREFFDTMP 259
>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
Length = 551
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 236/398 (59%), Gaps = 3/398 (0%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
D A ++F MP +D+++WN+M+ + G ++ A + MP+++ S+N M+SG+A
Sbjct: 97 DGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSR 156
Query: 122 KIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ +A F P K D V W +++ Y + G + KA E F+ M V+N+++WN +V GY+
Sbjct: 157 DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 216
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ + + LF M + NV+P+ T++SVL C+NL +L G +IH + L+ N
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNL 276
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
T+L+ MY KCG + + ++F + +DV WNAMI G A HG G A+ L M D
Sbjct: 277 TVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 336
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V+ + ITF+ +L+AC H GL G F M++ +G+ +++HY CMVDLL RA L+R
Sbjct: 337 GVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A++LI +MPFEP S G LL+AC ++++LE + A + K + S G + AN+YA
Sbjct: 397 AVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK-DPQSAGAYVQLANIYA 455
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
QW++ +R R M D +VKT G S IE+ G H+F
Sbjct: 456 GANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEF 493
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 120/229 (52%), Gaps = 10/229 (4%)
Query: 43 GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
G + TA++ Y + + A + FE MP +++++WN+++ + D A++L M
Sbjct: 172 GDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM 231
Query: 103 PLK-----DVTSFNIMISGYARIGKIHSARYIFD---KVP-AKDVVSWNSLILAYTNAGE 153
+ + ++ + ++ G + + + + I K+P ++++ SL+ Y G+
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 291
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+ A ++F +M ++V+ WN M++GY + E ++LF+ MK V+P+++T +VL+A
Sbjct: 292 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 351
Query: 214 CANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEV 261
C + G + G R + G+ + ++D+ + G +E+++++
Sbjct: 352 CIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDL 400
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 120/303 (39%), Gaps = 25/303 (8%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI-EVVDLFDEMKAGNVKPD 203
+ A G++ A E F K T+N ++ GY R+ + + LFD + PD
Sbjct: 24 VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT----PD 79
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
++ ++LS G + R+ + S ++ +K G++E++ VF
Sbjct: 80 AVSYNTLLSCHFASGDADGARRLFASMPVRDVVS----WNTMVSGLSKSGAVEEAKAVFL 135
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
V++ WNAM+ G A AA + ++ K D + + ++S G V +
Sbjct: 136 AMPVRNSVSWNAMVSGFACSRDMSAAEEWF---RNAPEKGDAVLWTAMVSGYMDIGNVVK 192
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE----PTESILGAL 379
E F M R L + +V + D A+ L M E P S L ++
Sbjct: 193 AIEYFEAMP-----VRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSV 247
Query: 380 LSACVIHQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
L C L G ++ + M S L+ G ++ ++Y CG A + M+
Sbjct: 248 LLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLV--SMYCKCGDLSSACKLFGEMHTR 305
Query: 438 GIV 440
+V
Sbjct: 306 DVV 308
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E V + + +L LS+ G +H +K ++ V T+L+ MY
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 291
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
+ A K+F +M +D++AWN+M+ +A G A+ L + M
Sbjct: 292 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERM 333
>gi|297828245|ref|XP_002882005.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
gi|297327844|gb|EFH58264.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
Length = 408
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 240/407 (58%), Gaps = 34/407 (8%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A K+F +MPEKD+I+WNSM+D + G+++ A L D+MP +DV + MI GYA++G +
Sbjct: 35 ASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFV 94
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
H A+ +FD++P +DVV++NS M+ GY++++
Sbjct: 95 HQAKTLFDQMPLRDVVAYNS-------------------------------MMAGYVQNK 123
Query: 184 LYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
++E +++F++M K ++ PD T+ +LSA A LG L +H+Y +
Sbjct: 124 CHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLG 183
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
ALIDMY+KCGSI+ ++ VF + K + WNAMI GLA+HG G +A +L ++ +
Sbjct: 184 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSII 243
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
DDITF+G+L+ACSH+GLV+EG F M + + +L+HYGCMVD+L R+ ++ A
Sbjct: 244 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 303
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
LIE MP EP + I L+AC H++ E G+ VAK + ++ Y + ++ +N+YAS G
Sbjct: 304 LIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGY-NPSSYVLLSNMYASFG 362
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNLL 469
W++ R R MM + I K G S IE++G H+F I +SN L
Sbjct: 363 MWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFVDSI-EVSNTL 408
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 43/238 (18%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+DA +F+ MP +D++ +M+D +A G + A L D MPL+DV ++N M++GY +
Sbjct: 63 IEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQ- 121
Query: 121 GKIH-SARYIFDKVPAKDVVSWN------------------------------------- 142
K H A IF+ + + +S +
Sbjct: 122 NKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGK 181
Query: 143 ---SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+LI Y+ G ++ A +F+ + K++ WN M+ G L ++ +++ +
Sbjct: 182 LGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLS 241
Query: 200 VKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+ PD +T VL+AC++ G ++ G + + + ++D+ ++ GSIE
Sbjct: 242 IIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 299
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 167/499 (33%), Positives = 266/499 (53%), Gaps = 40/499 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + ++F LLKA G +H ++TGF +V ALL Y + +
Sbjct: 86 GLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKG 145
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSF---- 110
+VF++M + ++ W ++ A+ + A++L D++ + V S
Sbjct: 146 RQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLL 205
Query: 111 -------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
+ +IS Y G + A F + P K++V WN++I
Sbjct: 206 GDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMI 265
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
+E ++F+ M ++V++WN+M+ G+ R Y E + F EM+ V P+ L
Sbjct: 266 HQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNAL 325
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ S LSACA+ G+L+TGA IH Y N + + ++LIDMY+KCG I++++++F +S
Sbjct: 326 TLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEES 385
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+D+F W +++ GLA+HG G AL +M ++ V+ DD+T +G+LSAC+HAGL+ +G
Sbjct: 386 TRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGW 445
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F MEK FG+ K+EHYGCMVDLLGR L A +LI MP E E I GA LSAC +
Sbjct: 446 WYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRV 505
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H ++E+G+ A+ + + +M +N+YA +W+ + R + G+ K+ G
Sbjct: 506 HNNVELGEVAARRLLGL-DPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGC 564
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IEVNGS H FL G H
Sbjct: 565 SSIEVNGSVHGFLVGDNSH 583
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 152/339 (44%), Gaps = 45/339 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E+G+ D + ++ A G+L + +H K+G +V + L+ YG
Sbjct: 183 MREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGS 242
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A++ F++ P K+I+ WN+M+ ++ +L MP +DV S+N MI G+ARI
Sbjct: 243 LDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARI 302
Query: 121 GKIHSARYIFDKVP----------------------AKDVVSW----------------- 141
G+ A F ++ A D +W
Sbjct: 303 GQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLD 362
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+SLI Y+ G+++KA ++F++ +++ TW ++V G + + F +MK V+
Sbjct: 363 SSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQ 422
Query: 202 PDYLTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD +T+ VLSACA+ G L+ G GL ++D+ + G ++++ +
Sbjct: 423 PDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYD 482
Query: 261 VFYKSQVK-DVFCWNAMILGLALHGY----GYAALKLLG 294
+ ++ + W A + +H AA +LLG
Sbjct: 483 LIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLG 521
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 131/330 (39%), Gaps = 17/330 (5%)
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
R ++ R+ F P + N L + N + ++ NV WNTM+
Sbjct: 7 RFPQLSHTRFSFRLHPLTNP---NKLPRIHGNTIATVEDPSAASRLDCANVFVWNTMIRK 63
Query: 179 YLRSQLYIEVVDLFDEMKA--GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+ + L L M+ ++P+ T +L A + ++ G +H G A
Sbjct: 64 QVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFA 123
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ + AL+ Y CG + + +VF + + + W +I + AL+L M
Sbjct: 124 CSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTM 183
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ + D + ++SAC G + + +EK G+ ++ G
Sbjct: 184 REVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKS-GIEVDAFVSSTLISTYGECGS 242
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
LD A + P + + ++ V H +LE+G ++ + + D +++ + +
Sbjct: 243 LDYAYRFFQETPMKNI-VVWNTMIHQSVEHNNLELGKQLFQ-------SMPDRDVVSWNS 294
Query: 417 L---YASCGQWEEANRWRNMMNDTGIVKTA 443
+ +A GQ++EA W + M +G+ A
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNA 324
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 236/398 (59%), Gaps = 3/398 (0%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
D A ++F MP +D+++WN+M+ + G ++ A + MP+++ S+N M+SG+A
Sbjct: 97 DGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSR 156
Query: 122 KIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ +A F P K D V W +++ Y + G + KA E F+ M V+N+++WN +V GY+
Sbjct: 157 DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 216
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ + + LF M + NV+P+ T++SVL C+NL +L G +IH + L+ N
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNL 276
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
T+L+ MY KCG + + ++F + +DV WNAMI G A HG G A+ L M D
Sbjct: 277 TVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 336
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V+ + ITF+ +L+AC H GL G F M++ +G+ +++HY CMVDLL RA L+R
Sbjct: 337 GVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A++LI +MPFEP S G LL+AC ++++LE + A + K + S G + AN+YA
Sbjct: 397 AVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK-DPQSAGAYVQLANIYA 455
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
QW++ +R R M D +VKT G S IE+ G H+F
Sbjct: 456 GANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEF 493
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 120/229 (52%), Gaps = 10/229 (4%)
Query: 43 GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
G + TA++ Y + + A + FE MP +++++WN+++ + D A++L M
Sbjct: 172 GDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM 231
Query: 103 PLK-----DVTSFNIMISGYARIGKIHSARYIFD---KVP-AKDVVSWNSLILAYTNAGE 153
+ + ++ + ++ G + + + + I K+P ++++ SL+ Y G+
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 291
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+ A ++F +M ++V+ WN M++GY + E ++LF+ MK V+P+++T +VL+A
Sbjct: 292 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 351
Query: 214 CANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEV 261
C + G + G R + G+ + ++D+ + G +E+++++
Sbjct: 352 CIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDL 400
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 120/303 (39%), Gaps = 25/303 (8%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI-EVVDLFDEMKAGNVKPD 203
+ A G++ A E F K T+N ++ GY R+ + + LFD + PD
Sbjct: 24 VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT----PD 79
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
++ ++LS G + R+ + S ++ +K G++E++ VF
Sbjct: 80 AVSYNTLLSCHFASGDADGARRLFASMPVRDVVS----WNTMVSGLSKSGAVEEAKAVFL 135
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
V++ WNAM+ G A AA + ++ K D + + ++S G V +
Sbjct: 136 AMPVRNSVSWNAMVSGFACSRDMSAAEEWF---RNAPEKGDAVLWTAMVSGYMDIGNVVK 192
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE----PTESILGAL 379
E F M R L + +V + D A+ L M E P S L ++
Sbjct: 193 AIEYFEAMP-----VRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSV 247
Query: 380 LSACVIHQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
L C L G ++ + M S L+ G ++ ++Y CG A + M+
Sbjct: 248 LLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLV--SMYCKCGDLSSACKLFGEMHTR 305
Query: 438 GIV 440
+V
Sbjct: 306 DVV 308
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E V + + +L LS+ G +H +K ++ V T+L+ MY
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 291
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
+ A K+F +M +D++AWN+M+ +A G A+ L + M
Sbjct: 292 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERM 333
>gi|297828247|ref|XP_002882006.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
gi|297327845|gb|EFH58265.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
Length = 412
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 240/407 (58%), Gaps = 34/407 (8%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A K+F +MPEKD+I+WNSM+D + G+++ A L D+MP +DV + MI GYA++G +
Sbjct: 39 ASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFV 98
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
H A+ +FD++P +DVV++NS M+ GY++++
Sbjct: 99 HQAKTLFDQMPLRDVVAYNS-------------------------------MMAGYVQNK 127
Query: 184 LYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
++E +++F++M K ++ PD T+ +LSA A LG L +H+Y +
Sbjct: 128 CHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLG 187
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
ALIDMY+KCGSI+ ++ VF + K + WNAMI GLA+HG G +A +L ++ +
Sbjct: 188 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSII 247
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
DDITF+G+L+ACSH+GLV+EG F M + + +L+HYGCMVD+L R+ ++ A
Sbjct: 248 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 307
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
LIE MP EP + I L+AC H++ E G+ VAK + ++ Y + ++ +N+YAS G
Sbjct: 308 LIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGY-NPSSYVLLSNMYASFG 366
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNLL 469
W++ R R MM + I K G S IE++G H+F I +SN L
Sbjct: 367 MWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFVDSI-EVSNTL 412
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 43/238 (18%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+DA +F+ MP +D++ +M+D +A G + A L D MPL+DV ++N M++GY +
Sbjct: 67 IEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQ- 125
Query: 121 GKIH-SARYIFDKVPAKDVVSWN------------------------------------- 142
K H A IF+ + + +S +
Sbjct: 126 NKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGK 185
Query: 143 ---SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+LI Y+ G ++ A +F+ + K++ WN M+ G L ++ +++ +
Sbjct: 186 LGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLS 245
Query: 200 VKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+ PD +T VL+AC++ G ++ G + + + ++D+ ++ GSIE
Sbjct: 246 IIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 303
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/502 (32%), Positives = 270/502 (53%), Gaps = 42/502 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+ +FP LLKA L G + G K GF V+V A + + + A ++
Sbjct: 119 PDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRL 178
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI---------------------------- 99
F++ P +D+++WN+++ + G A++L
Sbjct: 179 FDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMG 238
Query: 100 DLMPLKDVTSF-------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
DL K + F N ++ Y + G + A+ +F+++ K VVSW ++I+
Sbjct: 239 DLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIV 298
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
+ G ME A +F +M ++V WN ++ GY++++ E + LF EM+ V P+ +T
Sbjct: 299 GHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEIT 358
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ ++LSAC+ LG+LE G +H Y + L + T+L+DMYAKCG+I++++ +F +
Sbjct: 359 MVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIP 418
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K+ W AMI GLA HG+ A++ M D ++ D+ITFIG+LSAC HAGLV+EG +
Sbjct: 419 DKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQ 478
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
FS M + + + RK++HY CM+DLLGRA LD A +L+ MP +P + GAL AC +H
Sbjct: 479 FFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMH 538
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
++ +G++ A M + + G ++ AN+YA ++A++ R MM G+ K G S
Sbjct: 539 GNITLGEKAA-MKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCS 597
Query: 447 VIEVNGSYHKFLAGGIGHLSNL 468
IE+NG H+F+ HL +
Sbjct: 598 CIELNGVVHEFIVKDKSHLDTI 619
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+ + +PD+LT +L ACA L GA + + G +++ A + ++ GS+
Sbjct: 114 SSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMV 173
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM--NDSCVKADDITFIGLLSA 314
+ +F +S +DV WN +I G G AL+L + + V+ D++T IG +S
Sbjct: 174 LARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSG 233
Query: 315 CSHAGLVQEGCEL 327
C+ G ++ G L
Sbjct: 234 CAQMGDLELGKRL 246
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 157/429 (36%), Positives = 248/429 (57%), Gaps = 16/429 (3%)
Query: 44 HVYVQTALLKMY--GSLRCIDDAFKVFEKMPEK-----DIIAWNSMLDAFASCG-----Q 91
+V++ ++++ Y SL C D ++++++ K D + M + AS G +
Sbjct: 72 NVFLYNSIIRAYTHNSLYC--DVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGK 129
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
H L P V + N +I Y + + A +FD++ +DV+SWNSL+ Y
Sbjct: 130 QVHG-HLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARL 188
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G+M+KA +F ML K +++W M++GY Y+E +D F EM+ ++PD +++ SVL
Sbjct: 189 GQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVL 248
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
+CA LGSLE G IH+YA G ALI+MY+KCG I Q++++F + + KDV
Sbjct: 249 PSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVI 308
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
W+ MI G A HG + A++ EM + VK + ITF+GLLSACSH G+ QEG F M
Sbjct: 309 SWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMM 368
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
+D+ + K+EHYGC++D+L RA L+RA+E+ + MP +P I G+LLS+C +L++
Sbjct: 369 RQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDV 428
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
VA + G ++ AN+YA G+WE+ +R R M+ + + KT G S+IEVN
Sbjct: 429 A-LVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487
Query: 452 GSYHKFLAG 460
+F++G
Sbjct: 488 NIVQEFVSG 496
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 150/311 (48%), Gaps = 41/311 (13%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D ++FP + K+ L S +G +HG K G HV + AL+ MY + DA KV
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F++M E+D+I+WNS+L +A GQM A L LM K + S+ MISGY IG A
Sbjct: 167 FDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAM 226
Query: 128 YIFDKVP----AKDVVS------------------W-----------------NSLILAY 148
F ++ D +S W N+LI Y
Sbjct: 227 DFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMY 286
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
+ G + +A ++F +M K+VI+W+TM++GY ++ F+EM+ VKP+ +T
Sbjct: 287 SKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFL 346
Query: 209 SVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+LSAC+++G + G R + D + LID+ A+ G +E+++E+ +
Sbjct: 347 GLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPM 406
Query: 268 K-DVFCWNAMI 277
K D W +++
Sbjct: 407 KPDSKIWGSLL 417
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 146/355 (41%), Gaps = 79/355 (22%)
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+I + A +F++V +V +NS+I AYT+
Sbjct: 54 KIEDMDYATRLFNQVSNPNVFLYNSIIRAYTH---------------------------- 85
Query: 179 YLRSQLYIEVVDLFDEMKAGNVK-PDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
+ LY +V+ ++ ++ + + PD T + +CA+LGS G ++H + G
Sbjct: 86 ---NSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRF 142
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY------------ 285
+ ALIDMY K + + +VF + +DV WN+++ G A G
Sbjct: 143 HVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLML 202
Query: 286 ------------GYA-------ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
GY A+ EM + ++ D+I+ I +L +C+ G ++ G
Sbjct: 203 DKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKW 262
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+ E+ G ++ ++++ + ++ +AI+L M + S ++S H
Sbjct: 263 IHLYAERR-GFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVIS-WSTMISGYAYH 320
Query: 387 QD----LEIGDRVAKMVCAKSNYLSDGELMMFANLYASC---GQWEEANRWRNMM 434
+ +E + + + K N ++ F L ++C G W+E R+ +MM
Sbjct: 321 GNAHGAIETFNEMQR-AKVKPNGIT------FLGLLSACSHVGMWQEGLRYFDMM 368
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D S +L + L S +G +H + GF V AL++MY
Sbjct: 232 MQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGV 291
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
I A ++F +M KD+I+W++M+ +A G A++ + M V I ++S
Sbjct: 292 ISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSA 351
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
+ +G FD + + + LI AG++E+A E+ K M +K
Sbjct: 352 CSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK 407
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 264/476 (55%), Gaps = 16/476 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D+++FP LLKA LS +G +H Q + GF V+VQ L+ +Y R
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169
Query: 61 IDDAFKVFE--KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMI 114
+ A VFE +PE+ I++W +++ A+A G+ A+++ M DV + ++
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVL 229
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVI 170
+ + + + R I V + L+++ Y G++ A +F KM N+I
Sbjct: 230 NAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M++GY ++ E +D+F EM +V+PD +++TS +SACA +GSLE ++ Y
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ + ++ALIDM+AKCGS+E + VF ++ +DV W+AMI+G LHG A+
Sbjct: 350 GRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L M V +D+TF+GLL AC+H+G+V+EG F+RM D + + +HY C++DL
Sbjct: 410 SLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDL 468
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA--KSNYLSD 408
LGRA LD+A E+I+ MP +P ++ GALLSAC H+ +E+G+ A+ + + SN
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN---T 525
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G + +NLYA+ W+ R M + G+ K G S +EV G F G H
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSH 581
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 160/334 (47%), Gaps = 14/334 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+H+D++ L+ A + +H + + G ++ T L+ S I A
Sbjct: 17 GIHSDSFYASLIDSA----THKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFA 72
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARI 120
+VF+ +P I WN+++ ++ A+ + M L V+ +F ++ + +
Sbjct: 73 RQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGL 132
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--KNVITWNT 174
+ R++ +V DV N LI Y + A +F+ + + + +++W
Sbjct: 133 SHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTA 192
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
+V+ Y ++ +E +++F +M+ +VKPD++ + SVL+A L L+ G IH G
Sbjct: 193 IVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L P +L MYAKCG + + +F K + ++ WNAMI G A +GY A+ +
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
EM + V+ D I+ +SAC+ G +++ ++
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMY 346
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 89/235 (37%), Gaps = 37/235 (15%)
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+IH GL + T LI + G I + +VF +F WNA+I G + +
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
+ AL + M + V D TF LL ACS +Q G + +++ + G +
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR-LGFDADVFVQ 157
Query: 345 GCMVDLLGRARLLDRAIELIEAMPF-------------------EPTESI---------- 375
++ L + R L A + E +P EP E++
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 376 -------LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
L ++L+A QDL+ G + V + L+ +YA CGQ
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 261/461 (56%), Gaps = 42/461 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI---- 99
++ +++ + G + + +A+K+F +M EKD+++W++++ + G + A+ +
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296
Query: 100 -DLMPLKDVTSFNI--------------MISG--------------------YARIGKIH 124
+ M L +V ++ MI G Y+ G+I
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIM 356
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
A+ +F+ D +SWNS+I G +EKA +F M K++++W+ +++GY +
Sbjct: 357 DAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDC 416
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
+ E + LF EM+ G ++PD + SV+SAC +L +L+ G +H Y NGL N T
Sbjct: 417 FSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTT 476
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMY KCG +E +LEVF + K V WNA+I+GLA++G +L + EM ++ V +
Sbjct: 477 LLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPN 536
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+ITF+G+L AC H GLV EG F+ M + G+ ++HYGCMVDLLGRA LL+ A +LI
Sbjct: 537 EITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLI 596
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQ 423
E+MP P + GALL AC H D E+G+RV K++ + ++ DG ++ +N++AS G
Sbjct: 597 ESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDH--DGFHVLLSNIFASKGD 654
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
WE+ R MM G+VKT G S+IE NG H+FLAG H
Sbjct: 655 WEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTH 695
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 191/393 (48%), Gaps = 63/393 (16%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V DNY++PL+++A + G +H +K GF VYVQ L+ MY
Sbjct: 137 VGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMY---------- 186
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
A CG M A KL D P+ D S+N +++GY + G +
Sbjct: 187 ---------------------AVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEE 225
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
A+ IFD++P +++V+ NS+I+ G++ +A ++F +M K++++W+ +++GY ++ +Y
Sbjct: 226 AKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMY 285
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
E + +F EM A ++ D + V SVLSACA+L ++TG IH G+ S + AL
Sbjct: 286 EEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNAL 345
Query: 246 IDMYA-------------------------------KCGSIEQSLEVFYKSQVKDVFCWN 274
I MY+ KCGS+E++ +F KD+ W+
Sbjct: 346 IHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWS 405
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
A+I G A H L L EM ++ D+ + ++SAC+H + +G + + + K+
Sbjct: 406 AVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN 465
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
G+ + ++D+ + ++ A+E+ M
Sbjct: 466 -GLKVNVILGTTLLDMYMKCGCVENALEVFNGM 497
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 7/178 (3%)
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
++F ++ N WNTM+ Y++S + + L+ M NV PD T V+ ACA +
Sbjct: 96 QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VR 154
Query: 219 SLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
LE G + IH + G S+ + LI+MYA CG++ + ++F +S V D WN+++
Sbjct: 155 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 214
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKD 334
G G A + +M + A + + I LL G V E +LF+ M EKD
Sbjct: 215 AGYVKKGDVEEAKLIFDQMPQRNIVASN-SMIVLLGK---MGQVMEAWKLFNEMDEKD 268
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H K G +V + T LL MY C+++A +VF M EK + +WN+++ A
Sbjct: 455 GKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAV 514
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
G ++ ++ + M V I +G + + R+ +
Sbjct: 515 NGLVERSLDMFSEMKNNGVIPNEITF-----MGVLGACRH-----------------MGL 552
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
+ G A + K + NV + MV R+ L E L + M + PD T
Sbjct: 553 VDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP---MAPDVATWG 609
Query: 209 SVLSACANLGSLETGARI 226
++L AC G E G R+
Sbjct: 610 ALLGACKKHGDTEMGERV 627
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/457 (33%), Positives = 261/457 (57%), Gaps = 40/457 (8%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG------QMDHAMKL 98
V + T L+ Y ID A ++F+KM E+ +++W +M+ + G ++ M+
Sbjct: 302 VVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRF 361
Query: 99 IDLMP--------------LKD----------VTSFNIMISG---------YARIGKIHS 125
+++P L+D + ++ +++ G YA+ GK+
Sbjct: 362 ENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDE 421
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
A F+++P K SWNS++ + +G ++KA + F K+ K++++WNTMV Y++ L+
Sbjct: 422 ALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLF 481
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
E ++F +M++ NVKPD T+ S+LS+CA +G+L G ++VY N + + TAL
Sbjct: 482 NESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTAL 541
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
IDMY KCG +E + E+F + K+VF W AM+ A+ G A+ L EM + VK D
Sbjct: 542 IDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDH 601
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+TFI LL+ACSH GLV EG + F+++ + + + HYGCMVDLLGR L+ ++ IE
Sbjct: 602 VTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIE 661
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
MP EP SI +L+ AC H ++E+ ++ K + + + ++G ++ +N+YA G+W+
Sbjct: 662 RMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQL-IEIDPTNNGAHVLLSNIYADAGRWD 720
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
+ ++ R +++TG+ K G ++IE NG H+F+A +
Sbjct: 721 DVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNL 757
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 108/432 (25%), Positives = 195/432 (45%), Gaps = 75/432 (17%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D +F L+ A +G +HG+ +K GF + + L+ +Y + +
Sbjct: 128 GVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEV 187
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM--------------------PL 104
++FEKM +D+I+WN+M+ + G A+ L D M L
Sbjct: 188 CQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKL 247
Query: 105 KDV-------------------TSFNIMISGYARIGKIHSARYIFDKVPAK--DVVSWNS 143
KD+ + N ++ Y++ GK+ A + + DVV W +
Sbjct: 248 KDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTT 307
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ Y + +++KA ++F KM +++++W TM++GY++ Y E ++LF +M+ NV PD
Sbjct: 308 LVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPD 367
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL---- 259
+ + +VLSAC +L + G +H + G+ + AL+D+YAKCG ++++L
Sbjct: 368 EVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFE 427
Query: 260 ---------------------------EVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ F K KD+ WN M+ H + ++
Sbjct: 428 QLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEI 487
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGCMVDLL 351
+M S VK D T I LLS+C+ G + G + +EK + G+ L ++D+
Sbjct: 488 FCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG--TALIDMY 545
Query: 352 GRARLLDRAIEL 363
G+ ++ A E+
Sbjct: 546 GKCGCVEMAYEI 557
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 173/391 (44%), Gaps = 68/391 (17%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF--ASC 89
+H I + + +L S+ +D A ++ E + I WN++L+ C
Sbjct: 54 IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGC 113
Query: 90 GQ--MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP----AKDVVSWNS 143
Q ++ ++ L D+++F+ +I + + + ++ ++ N+
Sbjct: 114 PQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNN 173
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ Y+ G++++ ++F+KM ++VI+WNTM++ Y+ +Y E +DLFDEM V PD
Sbjct: 174 LMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPD 233
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG---------- 253
+T+ S++S CA L LE G R+H+Y DN L L+DMY+KCG
Sbjct: 234 EITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLS 293
Query: 254 -----------------------SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
I+++ ++F K + + W M+ G GY +L
Sbjct: 294 RCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESL 353
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE----HYGC 346
+L +M V D++ + +LSAC H +DF + R + YG
Sbjct: 354 ELFQQMRFENVIPDEVALVTVLSACVHL--------------EDFDLGRSVHAFIVTYGM 399
Query: 347 MVD-LLGRARL--------LDRAIELIEAMP 368
+VD LG A L LD A+ E +P
Sbjct: 400 LVDGFLGNALLDLYAKCGKLDEALRTFEQLP 430
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 146/324 (45%), Gaps = 41/324 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D + +L A L +G +H + G ++ ALL +Y
Sbjct: 359 MRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGK 418
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D+A + FE++P K +WNSMLD F G +D A + +P KD+ S+N M++ Y +
Sbjct: 419 LDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKH 478
Query: 121 GKIHSARYIFDKVPAKDVVS----------------------W----------------- 141
+ + IF K+ + +V W
Sbjct: 479 DLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG 538
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+LI Y G +E A E+F +++ KNV W M+ Y +E +DL+ EM+ VK
Sbjct: 539 TALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVK 598
Query: 202 PDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD++T ++L+AC++ G ++ G + + + + H ++D+ + G +E++++
Sbjct: 599 PDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVK 658
Query: 261 VFYKSQVK-DVFCWNAMILGLALH 283
+ ++ DV W++++ H
Sbjct: 659 FIERMPIEPDVSIWSSLMRACRSH 682
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 113/263 (42%), Gaps = 46/263 (17%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + LL + + + G+ ++ K + TAL+ MYG C
Sbjct: 491 MQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGC 550
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A+++F ++ EK++ W +M+ A+A GQ A++ IDL Y +
Sbjct: 551 VEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQ---ALEAIDL---------------YLEM 592
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
++ D V++ +L+ A ++ G +++ + F K+ ++ + + M
Sbjct: 593 E---------ERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCM 643
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-----IHVYA 230
V R E V + M ++PD +S++ AC + ++E + I +
Sbjct: 644 VDLLGRVGHLEETVKFIERMP---IEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDP 700
Query: 231 TDNGLASNPHATTALIDMYAKCG 253
T+NG A L ++YA G
Sbjct: 701 TNNG------AHVLLSNIYADAG 717
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/267 (18%), Positives = 101/267 (37%), Gaps = 48/267 (17%)
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
++P + + +L +C+N+ + IH + L +P T+ ++ +++ +
Sbjct: 33 LRPHW--IIDLLKSCSNIREF---SPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAH 87
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC---- 315
++ S + WN ++ G L+ M V D TF L+ AC
Sbjct: 88 QILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNF 147
Query: 316 -------------------------------SHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
S G ++E C+LF +M R + +
Sbjct: 148 DVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKM-----THRDVISW 202
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCA 401
M+ + A++L + M P E + +L+S C +DLE+G R+ +
Sbjct: 203 NTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVD 262
Query: 402 KSNYLSDGELMMFANLYASCGQWEEAN 428
++ L ++Y+ CG+ +EA+
Sbjct: 263 NKLWIRGSLLNCLVDMYSKCGKMDEAH 289
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 170/503 (33%), Positives = 271/503 (53%), Gaps = 55/503 (10%)
Query: 12 SFPLLLKAAGILSSSCIGLML-----HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
+ P LL++A + C+G H + G +V+TAL+ Y + C+ DA K
Sbjct: 71 ALPALLRSA----ARCVGAGAYVRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARK 126
Query: 67 VFEKMPEKDIIAWNSMLDAF--------------------------------ASCGQMDH 94
VF+ M +D+++W MLD++ ++CG + H
Sbjct: 127 VFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRH 186
Query: 95 A---------MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
M + D++ ++S +I+ YA + A +++ +P KD+VS +++
Sbjct: 187 LRTGKSIHSYMLVSDILINAHLSS--ALINLYASCASMEMAEKLYNGMPRKDLVSSTAMV 244
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y + E A +F M K+V++W+ M++GY S E + LF++M+ ++PD +
Sbjct: 245 FGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEV 304
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ SV+SACANLGSL+ IH + +NGL H ALIDM+AKCG I +L +F +
Sbjct: 305 TMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEM 364
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
K+V W +MI A+HG G +AL L +M + V+ +++TF+ LL AC HAGLV EG
Sbjct: 365 PQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGR 424
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
LFS M + +G+ K EHYGCMVDLLGRA+L+ A+ LIE+M P + G+LL+AC +
Sbjct: 425 SLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWM 484
Query: 386 HQDLEIGDRVAKMVCA-KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
H DL++G AK + N+ DG ++ + +Y +A R++M G+ K G
Sbjct: 485 HGDLKLGAFAAKKILQLDPNH--DGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETG 542
Query: 445 SSVIEVNGSYHKFLAGGIGHLSN 467
S +++N +H+F AGG + N
Sbjct: 543 LSWMDLNEPFHEFTAGGEKYPEN 565
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 151/338 (44%), Gaps = 45/338 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV +D +L A G + G +H + + + ++ +AL+ +Y S
Sbjct: 162 MKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCAS 221
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A K++ MP KD+++ +M+ +A + + A + D MP KDV S++ MISGYA
Sbjct: 222 MEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADS 281
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAG------------------ 158
+ + A +F+ + D V+ S+I A N G ++KA
Sbjct: 282 NQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHIC 341
Query: 159 -----------------EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+F +M KNVITW +M+T + + LF++M+ V+
Sbjct: 342 NALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVE 401
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T ++L AC + G + G + G+ ++D+ + +++++
Sbjct: 402 PNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVN 461
Query: 261 VFYKSQVK-DVFCWNAMILGLALHGY----GYAALKLL 293
+ ++ +V W +++ +HG +AA K+L
Sbjct: 462 LIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKIL 499
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 153/433 (35%), Positives = 248/433 (57%), Gaps = 32/433 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D+A K+F++MP KD++AW +ML + G++D A L D MP ++V S+ M+SGYA+
Sbjct: 159 VDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQN 218
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM---------------- 164
G+++ AR +F+ +P ++ VSW +++ Y AG +E A E+F M
Sbjct: 219 GQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFG 278
Query: 165 ------LVKNVI---------TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
K+V TW+ ++ Y +++ +E + F EM ++P+Y +V S
Sbjct: 279 QQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVIS 338
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+L+ CA L L+ G +H + +A +ALI MY KCG+++++ VF+ + KD
Sbjct: 339 ILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKD 398
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V WN+MI G A HG G AL + +M + + D IT+IG L+ACS+ G V+EG ++F+
Sbjct: 399 VVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFN 458
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M G+ LEHY CMVDLLGRA L+D A+ LI+ MP EP I GAL+ AC +H++
Sbjct: 459 SMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNA 518
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
EI + AK + + + G ++ +++Y S G+WE+A+ R ++ + K+ G S IE
Sbjct: 519 EIAEISAKKLL-ELEPGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIE 577
Query: 450 VNGSYHKFLAGGI 462
+ H F +G +
Sbjct: 578 YDKRVHLFKSGDV 590
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 143/283 (50%), Gaps = 39/283 (13%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
T+LL+ Y + DA ++F +MPE++ I++ +L F G++D A KL D MP KDV
Sbjct: 116 TSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVV 175
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++ M+SGY ++G++ AR +FD++P ++VVSW +++ Y G++ A ++F+ M +N
Sbjct: 176 AWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERN 235
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++W M+ GY+++ + +LF+ M PD+ L+AC
Sbjct: 236 EVSWTAMLFGYIQAGRIEDAEELFNAM------PDH-----PLAAC-------------- 270
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
NG +I + + G ++ + VF + +D W+A+I + +
Sbjct: 271 ----NG----------MIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLME 316
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
AL EM ++ + + I +L+ C+ ++ G E+ M
Sbjct: 317 ALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAM 359
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 14/285 (4%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM--DHAMKLIDLMPLKD 106
ALL Y D A +VF +MP +D+ ++N+++ + D A L +
Sbjct: 52 NALLAGYFRNHLPDAALRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPS 111
Query: 107 VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
V SF ++ GY R G + A +F ++P ++ +S+ L+ + +AG +++A ++F +M
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPA 171
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
K+V+ W M++GY + E LFDEM NV ++ T+++S A G + ++
Sbjct: 172 KDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNV----VSWTAMVSGYAQNGQVNLARKL 227
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+ N + TA++ Y + G IE + E+F + N MI+G G
Sbjct: 228 FEVMPER----NEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMV 283
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
AA + M C + DD T+ ++ A + E F M
Sbjct: 284 DAAKSVFDRM---CER-DDGTWSAIIKAYEQNEFLMEALSTFREM 324
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 168/386 (43%), Gaps = 24/386 (6%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-R 119
++ A FE MP + ++N++L + D A+++ MP +D+ S+N +ISG + R
Sbjct: 33 MEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTRDLASYNALISGLSLR 92
Query: 120 IGKIHSARYIFDKVP-AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ A +P VVS+ SL+ Y G + A ++F++M +N I++ ++ G
Sbjct: 93 RHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGG 152
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+L + E LFDEM A +V + T++LS +G ++ + D N
Sbjct: 153 FLDAGRVDEARKLFDEMPAKDV----VAWTAMLSGYCQVGRVDEARTLF----DEMPKRN 204
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+ TA++ YA+ G + + ++F ++ W AM+ G G A +L M D
Sbjct: 205 VVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPD 264
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARLL 357
+ A + G++ G+V +F RM E+D G + ++ + L
Sbjct: 265 HPLAACN----GMIVGFGQQGMVDAAKSVFDRMCERDDGT------WSAIIKAYEQNEFL 314
Query: 358 DRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
A+ M P + ++L+ C L+ G V + +S + +
Sbjct: 315 MEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSAL 374
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIV 440
+Y CG ++A R +M +V
Sbjct: 375 ITMYIKCGNLDKAKRVFHMFEPKDVV 400
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA 135
++ N+ + A G M+ A + MPL+ S+N +++GY R +A +F ++P
Sbjct: 17 VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76
Query: 136 KDVVSWNSLI--LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD 193
+D+ S+N+LI L+ + A + +V+++ +++ GY+R L + + LF
Sbjct: 77 RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFR 136
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
+M N +++ T +L + G ++ ++ D A + A TA++ Y + G
Sbjct: 137 QMPERN----HISYTVLLGGFLDAGRVDEARKLF----DEMPAKDVVAWTAMLSGYCQVG 188
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
++++ +F + ++V W AM+ G A +G A KL M + +++++ +L
Sbjct: 189 RVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPER----NEVSWTAMLF 244
Query: 314 ACSHAGLVQEGCELFSRM 331
AG +++ ELF+ M
Sbjct: 245 GYIQAGRIEDAEELFNAM 262
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 121/277 (43%), Gaps = 37/277 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M +G+ + S +L L+ G +HG ++ F +Y +AL+ MY
Sbjct: 324 MLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGN 383
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
+D A +VF KD++ WNSM+ +A G + A+ + D M L D ++ ++
Sbjct: 384 LDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTA 443
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ GK+ R IF+ + K + + ++ AG +++A + K M V+ + +
Sbjct: 444 CSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAV 503
Query: 171 TWNTMVTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSACA----------- 215
W ++ G R E+ ++ E++ GN P Y+ ++ + ++
Sbjct: 504 IWGALM-GACRMHKNAEIAEISAKKLLELEPGNAGP-YVLLSHIYTSSGRWEDASNMRKF 561
Query: 216 --------NLGS--LETGARIHVYATDNGLASNPHAT 242
+LG +E R+H++ + + LA HA+
Sbjct: 562 ISSRHLNKSLGCSWIEYDKRVHLFKSGDVLAHQEHAS 598
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 252/474 (53%), Gaps = 13/474 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+H + +++P +L+ +G +H +IK GF +YV L+ MY RC
Sbjct: 337 MQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRC 396
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-- 118
+D A K+ E + ++D+++W SM+ + + A+ M V NI ++ A
Sbjct: 397 LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASA 456
Query: 119 -------RIG-KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
R G +IH+ Y+ A D+ WN+L+ Y G E+A +F+++ K+ I
Sbjct: 457 CAGIKAMRQGLQIHARVYVSGY--AADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEI 514
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TWN +++G+ +S+LY + + +F +M K + T S +SA ANL ++ G ++H A
Sbjct: 515 TWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRA 574
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G S ALI +Y KCGSIE + +F + +++ WN +I + HG G AL
Sbjct: 575 VKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEAL 634
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M +K +D+TFIG+L+ACSH GLV+EG F M +G+ +HY C+VD+
Sbjct: 635 DLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDI 694
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA LDRA ++ MP I LLSAC +H+++EIG+ AK + + S
Sbjct: 695 LGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDS-AS 753
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N YA G+W ++ R MM D GI K G S IEV + H F G H
Sbjct: 754 YVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLH 807
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 107/446 (23%), Positives = 199/446 (44%), Gaps = 51/446 (11%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G M+H Q K FC +V AL+ +Y A +VF M D + +N+++ A
Sbjct: 163 GRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQ 222
Query: 89 CGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKDVVS 140
CG + A+++ D M L D + +++ A +G + + Y+ + D ++
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYIT 282
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
SL+ Y G++E A ++F NV+ WN M+ Y + + ++F +M+A +
Sbjct: 283 EGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI 342
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ T +L C G +E G +IH + NG S+ + + LIDMY+K ++++ +
Sbjct: 343 HPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARK 402
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+ + +DV W +MI G H + AL EM D V D+I SAC+
Sbjct: 403 ILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKA 462
Query: 321 VQEGCELFSRM-------------------------EKDFGVTRKLEH-----YGCMVDL 350
+++G ++ +R+ E+ F + R+++H + ++
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISG 522
Query: 351 LGRARLLDRAIELIEAMPFEPTE-------SILGALLSACVIHQDLEIGDRVAKMVCAKS 403
G++RL ++A+ + M + S + AL + I Q ++ R K+
Sbjct: 523 FGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRA-----VKT 577
Query: 404 NYLSDGELM-MFANLYASCGQWEEAN 428
+ S+ E+ +LY CG E+A
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAK 603
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 106/447 (23%), Positives = 199/447 (44%), Gaps = 57/447 (12%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +H ++ G + L+ +Y + A +VF+++ +D ++W +ML +A
Sbjct: 63 LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISG----------YARIGKIHSARYIFDKVPAKDVV 139
G A +L M V ++S +A+ IH+ ++ + +
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQ--VYKQAFCSETF 180
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
N+LI Y G + A +F ML + +T+NT+++G+ + + +FDEM+
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG 240
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
++PD +TV S+L+ACA++G L+ G ++H Y G++ + +L+D+Y KCG IE +
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
++F +V WN M++ + ++ G+M + + + T+ +L C+ G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTG 360
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE--------- 370
++ G ++ S K+ G + G ++D+ + R LD+A +++E +
Sbjct: 361 QIELGEQIHSLSIKN-GFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMI 419
Query: 371 -------------------------PTESILGALLSAC----VIHQDLEIGDRVAKMVCA 401
P L + SAC + Q L+I RV
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV-----Y 474
Query: 402 KSNYLSDGELM-MFANLYASCGQWEEA 427
S Y +D + NLYA CG+ EEA
Sbjct: 475 VSGYAADISIWNTLVNLYARCGRSEEA 501
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 44/273 (16%)
Query: 207 VTSVLSACANLGS-LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+T L AC G+ IH + GL ++ LID+YAK G + Q+ +VF +
Sbjct: 45 LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+D W AM+ G A G G A +L +M+ + V +LSAC+ L +G
Sbjct: 105 SSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164
Query: 326 ELFSRMEKD------------------FGVTRKLEHYGCMVDLLGRARLL---------- 357
+ +++ K FG + E C D+L R+
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC--DMLFCDRVTFNTLISGHAQ 222
Query: 358 ----DRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS---NYLS 407
+ A+++ + M P + +LL+AC DL+ G ++ + +Y++
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYIT 282
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+G L+ +LY CG E A+ N+ + T +V
Sbjct: 283 EGSLL---DLYVKCGDIETAHDIFNLGDRTNVV 312
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 170/471 (36%), Positives = 252/471 (53%), Gaps = 70/471 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G+ D+++FP LLKA L S +G+ LHG +K G C
Sbjct: 99 MRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAG-------------------C 139
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
DAF S++ + CG +D+A K
Sbjct: 140 ESDAF------------VNTSLVSLYGKCGFIDNAFK----------------------- 164
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK-------MLVKNVITWN 173
+FD +P K+V +W ++I Y G+ +A +MF++ ML K++++W+
Sbjct: 165 --------VFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWS 216
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
+M+ GY + L E +DLF +M +PD + VL ACA LG+LE G N
Sbjct: 217 SMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRN 276
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
NP TALIDMYAKCG ++ + EVF + KD+ WNA I GLA+ G+ AA L
Sbjct: 277 EFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLF 336
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
G+M S ++ D TF+GLL AC+HAGLV EG + F+ ME+ F +T ++EHYGCMVDLLGR
Sbjct: 337 GQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGR 396
Query: 354 ARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
A LD A +L+++MP E + GALL C +H+D ++ + V K + A S G ++
Sbjct: 397 AGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNS-GNYVL 455
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+Y++ +WE+A + R++M++ GI K G S IEV+G H+FL G H
Sbjct: 456 LSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSH 506
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 134/316 (42%), Gaps = 39/316 (12%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N ++ N G + +F + N+ +NTM+ G + + + E ++++ M+ +
Sbjct: 46 NKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLS 105
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T +L ACA L + G ++H G S+ T+L+ +Y KCG I+ + +V
Sbjct: 106 PDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKV 165
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE---MNDSCVKADDITFIGLLSACSHA 318
F K+V W A+I G G A+ + + D ++ D +++ ++ +
Sbjct: 166 FDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASN 225
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
GL +E +LF +M + F P +
Sbjct: 226 GLPKEALDLFFKMLNE---------------------------------GFRPDCYAMVG 252
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEA-NRWRNMMND 436
+L AC LE+G+ + ++ ++ +L + L ++YA CG+ + A +R M
Sbjct: 253 VLCACARLGALELGNWASNLM-DRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKK 311
Query: 437 TGIVKTAGSSVIEVNG 452
+V A S + ++G
Sbjct: 312 DIVVWNAAISGLAMSG 327
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 23/163 (14%)
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
SL+ +H GL + + ++ G+ S +F++++ ++F +N M
Sbjct: 20 FNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTM 79
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS-----------HAGLVQEGC 325
I GL L+ ++++ M + D TF LL AC+ H +V+ GC
Sbjct: 80 IHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGC 139
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
E D V L V L G+ +D A ++ + +P
Sbjct: 140 ------ESDAFVNTSL------VSLYGKCGFIDNAFKVFDDIP 170
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/450 (36%), Positives = 251/450 (55%), Gaps = 35/450 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M V DN++FPL+LKA L G ++HG+ + GF +V V+ LL +
Sbjct: 98 MTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFH----- 152
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A CG + A + D DV +++ +I+GYA+
Sbjct: 153 --------------------------AKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQR 186
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD++P +D+VSWN +I AYT GEME A +F + +K+V++WN MV GY+
Sbjct: 187 GDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYV 246
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNP 239
L E ++LFDEM PD +T+ S+LSACA+LG + G ++H + N +
Sbjct: 247 LHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLST 304
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
AL+DMYAKCG+I + + VF+ + KD+ WN++I GLA HG+ +L L EM +
Sbjct: 305 LLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRT 364
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V D+ITF+G+L+ACSH G V EG F M+ + + + H GC+VD+L RA LL
Sbjct: 365 KVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKE 424
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A + I +M EP + +LL AC +H D+E+ R + + + G+ ++ +N+YA
Sbjct: 425 AFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLL-RMRVDQSGDYVLLSNVYA 483
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
S G+W+ A R +M+D G+ KT GSS +E
Sbjct: 484 SHGEWDGAENVRKLMDDNGVTKTRGSSFVE 513
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 125/275 (45%), Gaps = 23/275 (8%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +MF ++ + WNT + G +S + V L+ +M +VKPD T VL AC
Sbjct: 60 AVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTK 119
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L + TG+ +H G SN L+ +AKCG ++ + ++F S DV W+A+
Sbjct: 120 LFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSAL 179
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I G A G A KL EM K D +++ +++A + G ++ LF D
Sbjct: 180 IAGYAQRGDLSVARKLFDEMP----KRDLVSWNVMITAYTKHGEMECARRLF-----DEA 230
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGD 393
+ + + MV L A+EL + M P E + +LLSAC ++GD
Sbjct: 231 PMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACA-----DLGD 285
Query: 394 RVAKMVCAKSNYLSDGELMM-----FANLYASCGQ 423
K V AK L+ G+L ++YA CG
Sbjct: 286 XGEK-VHAKIMELNKGKLSTLLGNALVDMYAKCGN 319
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 29/137 (21%)
Query: 212 SACANLGSLETGARIHVYATDNGLASN-----------------PHATTALIDMYAKCGS 254
S NLG+L +IH NG SN P ATTA+
Sbjct: 9 STITNLGTLR---QIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVT-------- 57
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ ++++F + D F WN I G + A+ L +M VK D+ TF +L A
Sbjct: 58 -QYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKA 116
Query: 315 CSHAGLVQEGCELFSRM 331
C+ V G + R+
Sbjct: 117 CTKLFWVNTGSVVHGRV 133
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 240/404 (59%), Gaps = 1/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A ++FE+MP +++I++ +M+D +A G+++ A L + MP K+V S+ +MISGY
Sbjct: 156 VEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVEN 215
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GK A +F+++P K++V+ ++I Y G+ +KA +F ++ +++ +WN M+TGY
Sbjct: 216 GKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYA 275
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ E + L +M ++PD+ T+ SVL+AC++L SL+ G + HV +G S
Sbjct: 276 QNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRIS 335
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
ALI MY KCGSI S F + DV WNAMI A HG+ AL GEM +
Sbjct: 336 ICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNR 395
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V+ D ITF+ LLSAC HAG V E F+ M + + + + EH+ C+VD+L R +++A
Sbjct: 396 VEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKA 455
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
++I+ MPFE I GALL+AC +H ++++G+ AK + + + G ++ +N+YA+
Sbjct: 456 YKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKI-VELEPQNSGAYVVLSNIYAA 514
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G W E R R +M + G+ K S +E++ H FL H
Sbjct: 515 AGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASH 558
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 156/356 (43%), Gaps = 23/356 (6%)
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
+P I L F S + H + I L +DV +FN+ I AR G I +AR +F
Sbjct: 12 LPRSPSIIRTIFLPIFHSFNRQFHPLS-IKLFSTQDVYAFNVQIGNLARAGNIGAARQLF 70
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
D++P +D VSWNS+I Y G +++ +F M KNV++WN+M+ G + + E
Sbjct: 71 DEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQ 130
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
F M N + +++S +E +R+ + S TA++D YA
Sbjct: 131 YFQAMPQRNTA----SWNAMISGLVRYDRVEEASRLFEEMPRRNVIS----YTAMVDGYA 182
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
K G IEQ+ +F K+V W MI G +G A L +M D + +
Sbjct: 183 KIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI----VAMTA 238
Query: 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL---IEAM 367
+++ G + LF ++ R L + M+ + + A++L + M
Sbjct: 239 MITGYCKEGKTDKAKILFDQIP-----CRDLASWNAMITGYAQNGSGEEALKLHSQMLKM 293
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCG 422
+P S L ++L+AC L+ G R ++ KS Y S + +Y CG
Sbjct: 294 GMQPDHSTLISVLTACSSLASLQEG-RKTHVLVLKSGYESRISICNALITMYCKCG 348
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 13/175 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M ++G+ D+ + +L A L+S G H +K+G+ + + AL+ MY
Sbjct: 290 MLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGS 349
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
I D+ F ++ D+++WN+M+ AFA G D A+ M V +F ++S
Sbjct: 350 ILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 409
Query: 117 YARIGKIHSARYIFDK-------VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
GK+H + F+ VP + + L+ + G++EKA ++ ++M
Sbjct: 410 CGHAGKVHESLNWFNSMIESYKIVPRPE--HFACLVDILSRGGQVEKAYKIIQEM 462
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 257/472 (54%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G D+ + +L AA + +G +HG I+ GF V + TAL MY
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNIM--ISG 116
++ A +F+ M +K +++WNSM+D + G+ + A+ + + M + D T IM +
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHA 358
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + +++ V D+ NSLI Y+ ++ A ++F + + ++W
Sbjct: 359 CADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSW 418
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY ++ E ++ F EMK+ +KPD T+ SV+ A A L IH
Sbjct: 419 NAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIR 478
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ L N TTAL+DMY+KCG+I + ++F + V WNAMI G HG G AAL L
Sbjct: 479 SCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDL 538
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M V+ +DIT++ ++SACSH+GLV EG F M++D+G+ ++HYG MVDLLG
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLG 598
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA + A + IE MP P ++ GA+L AC IH+++E+G++ AK + + N G +
Sbjct: 599 RAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLF-ELNPDEGGYHV 657
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YAS +W + R M G+ KT G SV+E+ H F +G H
Sbjct: 658 LLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTH 709
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 103/445 (23%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y+F LLK G + G +HGQ I F +V+ T ++ MY R IDDA+K+F++
Sbjct: 148 YNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDR 207
Query: 71 MPEKDIIAWNSMLDAFASC----------------GQMDHAMKLIDLMPL---------- 104
MPE+D+++WN+++ F+ GQ ++ L+ ++P
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG 267
Query: 105 KDVTSFNI-------------MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
K + + I + Y++ G + +AR IFD + K VVSWNS++ Y
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN 327
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
GE EKA +F+KML + + P +T+ L
Sbjct: 328 GEPEKAIAVFEKMLEE-------------------------------GIDPTGVTIMEAL 356
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
ACA+LG LE G +H + L S+ +LI MY+KC ++ + ++F +
Sbjct: 357 HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHV 416
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL------LSACSHA----GLV 321
WNAMILG A +G AL EM +K D T + + LS HA GL+
Sbjct: 417 SWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLI 476
Query: 322 QEGC------------ELFS--------RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
C +++S R D R + + M+D G L A+
Sbjct: 477 IRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAAL 536
Query: 362 ELIEAMP---FEPTESILGALLSAC 383
+L + M EP + +++SAC
Sbjct: 537 DLFDKMKKGAVEPNDITYLSVISAC 561
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 149/298 (50%), Gaps = 12/298 (4%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM 96
IK G QT L+ ++ I++A +VFE + +K +++ML +A ++ A+
Sbjct: 73 IKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETAL 132
Query: 97 KLIDLMPLKDVT----SFNIMI------SGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
+ M DV +F ++ + R +IH + A +V + ++
Sbjct: 133 AFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQ--LITNSFAANVFAMTGVVN 190
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y +++ A +MF +M +++++WNT++ G+ ++ + ++L M+ +PD +T
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSIT 250
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ +VL A A++G L G IH YA G A + +TAL DMY+KCGS+E + +F
Sbjct: 251 LVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD 310
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
K V WN+M+ G +G A+ + +M + + +T + L AC+ G ++ G
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NGL + T L+ +++K GSI ++ VF K ++ M+ G A + AL
Sbjct: 75 NGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAF 134
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
L M VK F LL C ++ G E+ ++ + G +V++
Sbjct: 135 LCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTG-VVNMYA 193
Query: 353 RARLLDRAIELIEAMP 368
+ R +D A ++ + MP
Sbjct: 194 KCRQIDDAYKMFDRMP 209
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/457 (34%), Positives = 248/457 (54%), Gaps = 42/457 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V A++ Y +D+A +F +MPEK+ I+W ++++ + G++D A +L++ MP
Sbjct: 263 NVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMP 322
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++V + MISGY + ++ AR IF+++ +DVV WN++I Y+ G M++A +FK+
Sbjct: 323 YRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQ 382
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV----------------------- 200
M+ K++++WNTMV Y + + +F+EMK N+
Sbjct: 383 MVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSF 442
Query: 201 --------KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
KPD T LS+CA+L +L+ G ++H +G A++ + ALI MYAKC
Sbjct: 443 MLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKC 502
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
GSI + +F DV WN++I AL+G G ALKL +M V D++TF+G+L
Sbjct: 503 GSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGIL 562
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
SACSH GL+ +G +LF M + + + EHY CMVDLLGRA L+ A +L+ M
Sbjct: 563 SACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINAN 622
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVC-----AKSNYLSDGELMMFANLYASCGQWEEA 427
I GALL AC IH +LE+ A+ + SNY+ + +N+ A G+W+E
Sbjct: 623 AGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYV------LLSNMQAEAGRWDEV 676
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R R +M + G K G S IE+ H FL+ H
Sbjct: 677 ARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAH 713
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 196/383 (51%), Gaps = 32/383 (8%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y R D+A ++F+ MP KD+++WNSML + G+M ++ + M +DV
Sbjct: 144 NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVV 203
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N+M+ G+ +G ++S+ F+K+P + VSW +++ + G++ +A +F +M ++N
Sbjct: 204 SWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRN 263
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+ WN M+ Y+++ E + LF EM N ++ T+V++ +G L+ ++
Sbjct: 264 VVAWNAMIAAYVQNCHVDEAISLFMEMPEKNS----ISWTTVINGYVRMGKLDEARQL-- 317
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ N A TA+I Y + ++ + ++F + ++DV CWN MI G + G
Sbjct: 318 --LNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDE 375
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-----LEH 343
AL L +M VK D +++ ++++ + G + ++F M++ V+ L
Sbjct: 376 ALHLFKQM----VKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQ 431
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
G +D L L+ + +P +S LS+C L++G ++ ++V KS
Sbjct: 432 NGSYLDALKSFMLMGHEGQ-------KPDQSTFACGLSSCAHLAALQVGKQLHQLVM-KS 483
Query: 404 NYLSDGELMMFAN----LYASCG 422
Y +D + +N +YA CG
Sbjct: 484 GYATD---LFVSNALITMYAKCG 503
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 177/389 (45%), Gaps = 31/389 (7%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V+ + G ID+A KVF+ M K+ + NSM+ AFA G++ A +L D MP
Sbjct: 14 YVFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMP 73
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+++ S+N MI+ Y ++ AR +FDK+P +D+ SW +I YT GE+ KA +F
Sbjct: 74 QRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNL 133
Query: 164 MLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+ K N + N MV GY +++ + E LFD M A D ++ S+L+ G +
Sbjct: 134 LPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPA----KDLVSWNSMLTGYTRNGEMRL 189
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G + + + S ++D + + G + S E F K + W M+ G A
Sbjct: 190 GLQFFEEMAERDVVS----WNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFAR 245
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
G A +L +M V A + + C V E LF M + ++
Sbjct: 246 FGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCH----VDEAISLFMEMPEKNSIS---- 297
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK 402
+ +++ R LD A +L+ MP+ + A++S V ++ ++ ++ + +
Sbjct: 298 -WTTVINGYVRMGKLDEARQLLNQMPYRNV-AAQTAMISGYVQNKRMDDARQIFNQISIR 355
Query: 403 S----NYLSDGELMMFANLYASCGQWEEA 427
N + G Y+ CG+ +EA
Sbjct: 356 DVVCWNTMIAG--------YSQCGRMDEA 376
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 13/246 (5%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D +F L + L++ +G LH +K+G+ ++V AL+ MY I A
Sbjct: 449 GQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSA 508
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARI 120
+F+ + D+++WNS++ A+A G A+KL M ++ D +F ++S + +
Sbjct: 509 ELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHV 568
Query: 121 GKIHSARYIFD-KVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
G I +F V A ++ + ++ AG +E+A ++ + M + N W
Sbjct: 569 GLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGA 628
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-ANLGSLETGARIHVYATDN 233
++ G R +E+ E K +P + +LS A G + AR+ +
Sbjct: 629 LL-GACRIHGNLELAKFAAE-KLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEK 686
Query: 234 GLASNP 239
G P
Sbjct: 687 GAEKQP 692
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 185/508 (36%), Positives = 276/508 (54%), Gaps = 50/508 (9%)
Query: 6 VHADNYSFPLLLKAAG--ILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
V D+++FP LLKA ++S+ G +H ++ GF V+V ALL Y + +
Sbjct: 112 VLPDSFTFPFLLKACANVLISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVN 171
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG--- 116
A+KVF++ +D +++N+M++ FA G + ++ M D +F ++SG
Sbjct: 172 AYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSV 231
Query: 117 ----------------------------------YARIGKIHSARYIFDKV-PAKDVVS- 140
YA+ G++ A + V P K VV+
Sbjct: 232 LEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAA 291
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
W SL+ AY GE++ A +F +M ++V++W M++GY + + E ++LF +++ +
Sbjct: 292 WTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGM 351
Query: 201 KPDYLTVTSVLSACANLGSLETGARIH-VYATDNGLAS-NPHATTALIDMYAKCGSIEQS 258
KPD + V + LSACA LG+LE G RIH YA +N S N T+A++DMYAKCGSI+ +
Sbjct: 352 KPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIA 411
Query: 259 LEVFYKSQ--VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
L+VF K+ K F +N++I GLA HG G A L EM +K D+ITF+ +LSAC
Sbjct: 412 LDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACG 471
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
H GLV G +LF M +GV+ ++EHYGCMVDLLGRA LD A LI MPF+ I
Sbjct: 472 HCGLVDFGKKLFESMFTVYGVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIW 531
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
ALLSAC +H D+ + RVA + + +M +N+ + Q +EA R +++
Sbjct: 532 RALLSACKVHGDVALA-RVASYELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDN 590
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
GI K G S +E+N S HKFLAG H
Sbjct: 591 VGIQKPPGWSYVEMNRSLHKFLAGDKSH 618
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/433 (24%), Positives = 179/433 (41%), Gaps = 69/433 (15%)
Query: 23 LSSSCIGLM----LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF---KVFEKMPEKD 75
L SSC + ++ I TG ++++ T L Y S +F ++ D
Sbjct: 20 LLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTLFTQITNPD 79
Query: 76 IIAWNSMLDAFASC-GQMDHAMKLIDLM----PLKDVTSF--------NIMISGYARIGK 122
I WN+++ A++ H L M L D +F N++IS +
Sbjct: 80 IFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQFGFQ 139
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+H ++ DV N+L+ Y G++ A ++F + V++ +++NTM+ G+ R
Sbjct: 140 VHC--HVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARK 197
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH--VYATDNGLASNPH 240
+F EM+ V+PD T ++LS C+ L G ++H VY N
Sbjct: 198 GDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVL 257
Query: 241 ATTALIDMYAKCGSI---EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
L+DMYAKCG + E L V K V W +++ AL G A +L +M
Sbjct: 258 LVNKLVDMYAKCGRLVMAETVLSVV-KPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMG 316
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ D +++ ++S SHAG QE ELF ++
Sbjct: 317 ER----DVVSWTAMISGYSHAGCFQEALELFVKL-------------------------- 346
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY---LSDGELMMF 414
E + +P E + A LSAC LE+G R+ + A N+ ++ G
Sbjct: 347 -------EGLGMKPDEVAVVAALSACARLGALELGRRIHRQY-AGENWTCSINRGFTSAV 398
Query: 415 ANLYASCGQWEEA 427
++YA CG + A
Sbjct: 399 VDMYAKCGSIDIA 411
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 106/269 (39%), Gaps = 53/269 (19%)
Query: 202 PDYLT---VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA---KCGSI 255
P +L+ + S+LS+C +++ +I+ + G +N H +T L YA S+
Sbjct: 9 PRFLSNERIKSLLSSCK---TMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSL 65
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLA-LHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
S +F + D+F WNA+I + +H L M +S V D TF LL A
Sbjct: 66 HHSHTLFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKA 125
Query: 315 CSHAGL------VQEGCELFSR-MEKDFGVTRKLEHYGC-MVDLLGRARLLD-------- 358
C++ + Q C + D V L ++ C D++ ++ D
Sbjct: 126 CANVLISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCV 185
Query: 359 -------------------RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
R + + P E ALLS C + +D IG +V +V
Sbjct: 186 SFNTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLV 245
Query: 400 -----CAKSNYLSDGELMMFANLYASCGQ 423
C N L +L+ ++YA CG+
Sbjct: 246 YRELGCFGGNVLLVNKLV---DMYAKCGR 271
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 252/470 (53%), Gaps = 38/470 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + D+Y+FP +LKA L + +GL +H +K G ++++ AL+ MYG
Sbjct: 128 MLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGK--- 184
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
CG + A K++D MP +DV S+N M++GYA+
Sbjct: 185 ----------------------------CGCLREARKVLDQMPYRDVVSWNSMVAGYAQS 216
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSL--ILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
G+ A I ++ + D + SL ++ YT+ ++ MF++M KN+I+WN
Sbjct: 217 GQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNV 276
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ Y+ + + E V LF +M+ +KPD +T+ S+L AC +L +L G R+H Y
Sbjct: 277 MIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGN 336
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L N AL+DMYAKCG +E++ +VF K +++DV W +M+ G GY A+ L
Sbjct: 337 LRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFA 396
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+M DS D I F+ +LSACSH GL+ +G F M + +G+ ++EH+ CMVDL GRA
Sbjct: 397 KMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRA 456
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
++ A I+ MP EP E + GALLSAC +H ++IG A ++ + S G ++
Sbjct: 457 GEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQS-GYYVLL 515
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G W++ R M GI K G S +E+NG H FLAG H
Sbjct: 516 SNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYH 565
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 23/346 (6%)
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
G + K+HS I + + ++ L+ AY+ GE A +F + L KNV+ +N
Sbjct: 49 PGIKTLNKLHSKIVINEHLRIDPTLAI-KLMRAYSAQGETSVARYIFDRSLEKNVVFFNV 107
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ Y+ + LY+E + +F M + PD+ T VL AC+ L +L G ++H G
Sbjct: 108 MIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVG 167
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L +N AL+ MY KCG + ++ +V + +DV WN+M+ G A G AL++
Sbjct: 168 LDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICK 227
Query: 295 EMNDSCVKADDITFIGLLSACSHAGL--VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM+ + D T L + L VQ +F RM K + L + M+ +
Sbjct: 228 EMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTK-----KNLISWNVMIAIYV 282
Query: 353 RARLLDRAIEL---IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA---KSNYL 406
+ + A+ L +E +P + +LL AC L +G R+ K + + N L
Sbjct: 283 NNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLL 342
Query: 407 SDGELMMFANLYASCGQWEEAN------RWRNMMNDTGIVKTAGSS 446
+ L+ ++YA CG EEA R R++++ T ++ G S
Sbjct: 343 LENALL---DMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 168/488 (34%), Positives = 270/488 (55%), Gaps = 47/488 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D Y++P +LKA + S G +H KTG VYV ALL +YGS + DA
Sbjct: 70 VFPDKYTYPAMLKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDAR 129
Query: 66 KVFEKMPEKDIIAWNSMLDA------------------------------FASCGQMD-- 93
++F+ MP +D+ +WN++L A F++CG++
Sbjct: 130 RLFDGMPHRDLASWNTLLGAYNDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGT 189
Query: 94 ------HAMKL-IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA-KDVVSWNSLI 145
H + + + P ++ N ++ Y + G++ +A+ +F ++ A +DVVS L
Sbjct: 190 EFGKEVHGYVIKVGIRPALSLS--NALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILF 247
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y + G ++ A +F +M VK++++WN+M+ Y++++ + ++LF +M+ V+PD
Sbjct: 248 NGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDET 307
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ SVL+ACA+L L+ G H + N + TALIDMYAKCGS+E+++ FYK
Sbjct: 308 TMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKM 367
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+DVF W I GLA HG+G AL L EM +K + TF+ +L ACS +GLV+EGC
Sbjct: 368 DSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMACSRSGLVKEGC 427
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG--ALLSAC 383
LF RM + + + K+EH GC++D+L RA LL +A E I+ MP P E I+ LLSAC
Sbjct: 428 LLFKRMVEAYQIQPKIEHLGCLLDILSRAGLLHQAEEFIKLMP--PKEKIIANKTLLSAC 485
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
+ H + ++G+++A + S+ S ++ +N YA GQW E + R +M + I K
Sbjct: 486 MNHLEYDLGEKIANGLTELSSQ-SHATHILLSNFYALAGQWAEVAKTRRVMKEIDIRKVP 544
Query: 444 GSSVIEVN 451
G S +++
Sbjct: 545 GISSVDIK 552
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 130/324 (40%), Gaps = 41/324 (12%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+ S ++ A G + + G +HG IK G + + ALL +Y +D A
Sbjct: 168 GIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAA 227
Query: 65 FKVFEKMPE-KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
+F +M +D+++ + + + G +D A + D M +KD+ S+N MI Y +
Sbjct: 228 QSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHP 287
Query: 124 HSA---------------------------------------RYIFDKVPAKDVVSWNSL 144
A R+I P +D+ +L
Sbjct: 288 KKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTAL 347
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I Y G +E+A F KM ++V TW T + G + + LF EM+ +KP+
Sbjct: 348 IDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQ 407
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T SVL AC+ G ++ G + + + L+D+ ++ G + Q+ E
Sbjct: 408 ATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSRAGLLHQAEEFIK 467
Query: 264 KSQVKDVFCWNAMILGLALHGYGY 287
K+ N +L ++ Y
Sbjct: 468 LMPPKEKIIANKTLLSACMNHLEY 491
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVY 229
TWN ++ + RS I + +++ G V PD T ++L AC +GSL G +H +
Sbjct: 40 TWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAH 99
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
T GL S+ + AL+ +Y G + + +F +D+ WN + LG A +
Sbjct: 100 VTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTL-LG-AYNDNAVEV 157
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
L L M + D I+ + + SAC G + G E+
Sbjct: 158 LVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEV 195
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 38/260 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D + +L A L+ G + H I+ ++V TAL+ MY
Sbjct: 297 MENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGS 356
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A F KM +D+ W + ++ A+ G D A+ L M + +
Sbjct: 357 LEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGI------------- 403
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
K + A ++ S+++A + +G +++ +FK+M+ I G L
Sbjct: 404 -KPNQATFV-------------SVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCL 449
Query: 181 -----RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
R+ L + + M K + ++LSAC N + G +I T+ L
Sbjct: 450 LDILSRAGLLHQAEEFIKLMPP---KEKIIANKTLLSACMNHLEYDLGEKIANGLTE--L 504
Query: 236 ASNPHATTALI-DMYAKCGS 254
+S HAT L+ + YA G
Sbjct: 505 SSQSHATHILLSNFYALAGQ 524
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 148/420 (35%), Positives = 247/420 (58%), Gaps = 3/420 (0%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
T++++ Y + +A +FE+MPEKD+ +W M+ A+ S G + A L +LMP+ DV
Sbjct: 203 TSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVG 262
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++N+MISG + G++ +A+ FD++ ++V SW +I Y G+++ A +F +M KN
Sbjct: 263 TWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKN 322
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++ W+TM+ GY ++ + L+ K +KPD ++SAC+ LG +T +
Sbjct: 323 LVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVIC 382
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
L N T+LIDMYAKCG+IE++++VF KD+ C++ +I A HG
Sbjct: 383 DFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSED 442
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A+ L EM + +K D + F+G+L+AC+H GLV EG LF +M ++G+ +HY CMV
Sbjct: 443 AISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMV 502
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLS 407
D+LGRA L+ A LI +MP P ++ GALLSAC +H ++++ + A ++ + N +
Sbjct: 503 DILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQLAEAAATELFQIEPN--N 560
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
G ++ N+YA GQW++ ++ R M+ + + K GSS IE+ H+F+ G H +
Sbjct: 561 SGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELGSVIHEFVMGDKSHFDS 620
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 167/362 (46%), Gaps = 54/362 (14%)
Query: 46 YVQTALLKMYGSLRCIDDAFKVFEKM------P--------------------------- 72
++ TAL+ + ++AF F KM P
Sbjct: 68 FLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGL 127
Query: 73 ------EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
E D++ N M++ F CG+M A ++ D M +D S+N MI+GY G++ A
Sbjct: 128 AVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIA 187
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
R +FD++ ++V+SW S+I Y AG++ +A +F++M K++ +W MV+ Y+ +
Sbjct: 188 RKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLV 247
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
+LF+ M +V T ++S C G ++ + +AS +I
Sbjct: 248 AARNLFELMPIHDVG----TWNLMISGCCKAGEMDAAKEFFDRMQERNVAS----WVMII 299
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
D Y K G ++ + VF + K++ W+ MI G A G+ Y++LKL + +K D+
Sbjct: 300 DGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDET 359
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDF---GVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+G++SACS G+ + DF + L+ ++D+ + ++RA+++
Sbjct: 360 FALGIISACSQLGVPDTAESVIC----DFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQV 415
Query: 364 IE 365
E
Sbjct: 416 FE 417
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 12/247 (4%)
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
IH+ I + + D+ + N L+ Y+ G + A ++F + N W ++ G+ +
Sbjct: 22 IHAHLLISGSIASSDL-TLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTEN 80
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
Y F +M N+ P T+ SVL A + LG ++ G ++ A G +
Sbjct: 81 NQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVK 140
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
+I+++ +CG + + ++F + + +D WN+MI G +G A KL M + V
Sbjct: 141 NVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNV- 199
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
I++ ++ AG + E LF RM EKD L + MV L A
Sbjct: 200 ---ISWTSMIQGYVKAGDLLEARVLFERMPEKD------LASWKVMVSAYMSVGNLVAAR 250
Query: 362 ELIEAMP 368
L E MP
Sbjct: 251 NLFELMP 257
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 19 AAGILSS-SCIGLMLHGQTIKTGFCG-----HVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
A GI+S+ S +G+ +++ F G ++ V T+L+ MY I+ A +VFE +
Sbjct: 361 ALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVD 420
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
+KD+ +++++ AFA+ G + A+ L ++ NI G A +G
Sbjct: 421 QKDLHCYSTVITAFANHGLSEDAISL-----FSEMQKANIKPDGVAFLG 464
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 161/477 (33%), Positives = 265/477 (55%), Gaps = 15/477 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D+ FP +LK+ ++ G +HG ++ G +Y AL+ MY L
Sbjct: 96 MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLG 155
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-------TSFNIM 113
ID KVFE MP KD++++N+++ +A G + A++++ M D+ +S +
Sbjct: 156 IDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPI 215
Query: 114 ISGYARIGK---IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
S Y + K IH Y+ K DV +SL+ Y + +E + +F + ++ I
Sbjct: 216 FSEYVDVLKGKEIHG--YVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSI 273
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN++V GY+++ Y E + LF +M + V+P + +SV+ ACA+L +L G ++H Y
Sbjct: 274 SWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYV 333
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G N +AL+DMY+KCG+I+ + ++F + + D W A+I+G ALHG+G+ A+
Sbjct: 334 LRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAV 393
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L EM VK + + F+ +L+ACSH GLV E F+ M K +G+ ++LEHY + DL
Sbjct: 394 SLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADL 453
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDG 409
LGRA L+ A + I M EPT S+ LLS+C +H++LE+ ++VA K+ S + G
Sbjct: 454 LGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENM--G 511
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
++ N+YAS G+W+E + R + G+ K S IE+ H F++G H S
Sbjct: 512 AYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPS 568
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+I YTN + +A +FK + V+ W +++ + L+ + F EM+A PD
Sbjct: 45 VISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPD 104
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ SVL +C + L G +H + G+ + + AL++MY+K I+ +VF
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFE 164
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
KDV +N +I G A G AL+++ EM S +K D T +L S V +
Sbjct: 165 LMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLK 224
Query: 324 GCEL 327
G E+
Sbjct: 225 GKEI 228
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 252/470 (53%), Gaps = 38/470 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + D+Y+FP +LKA L + +GL +H +K G ++++ AL+ MYG
Sbjct: 128 MLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGK--- 184
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
CG + A K++D MP +DV S+N M++GYA+
Sbjct: 185 ----------------------------CGCLREARKVLDQMPYRDVVSWNSMVAGYAQS 216
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSL--ILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
G+ A I ++ + D + SL ++ YT+ ++ MF++M KN+I+WN
Sbjct: 217 GQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNV 276
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ Y+ + + E V LF +M+ +KPD +T+ S+L AC +L +L G R+H Y
Sbjct: 277 MIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGN 336
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L N AL+DMYAKCG +E++ +VF K +++DV W +M+ G GY A+ L
Sbjct: 337 LQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFA 396
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+M DS D I F+ +LSACSH GL+ +G F M + +G+ ++EH+ CMVDL GRA
Sbjct: 397 KMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRA 456
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
++ A I+ MP EP E + GALLSAC +H ++IG A ++ + S G ++
Sbjct: 457 GEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQS-GYYVLL 515
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G W++ R M GI K G S +E+NG H FLAG H
Sbjct: 516 SNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYH 565
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 23/346 (6%)
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
G + K+HS I + + ++ L+ AY+ GE A +F + L KNV+ +N
Sbjct: 49 PGIKTLNKLHSKIVINEHLRIDPTLAI-KLMRAYSAQGETSVARYIFDRSLEKNVVFFNV 107
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ Y+ + LY+E + +F M + PD+ T VL AC+ L +L G ++H G
Sbjct: 108 MIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVG 167
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L +N AL+ MY KCG + ++ +V + +DV WN+M+ G A G AL++
Sbjct: 168 LDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICK 227
Query: 295 EMNDSCVKADDITFIGLLSACSHAGL--VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM+ + D T L + L VQ +F RM K + L + M+ +
Sbjct: 228 EMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTK-----KNLISWNVMIAIYV 282
Query: 353 RARLLDRAIEL---IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA---KSNYL 406
+ + A+ L +E +P + +LL AC L +G R+ K + + N L
Sbjct: 283 NNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLL 342
Query: 407 SDGELMMFANLYASCGQWEEAN------RWRNMMNDTGIVKTAGSS 446
+ L+ ++YA CG EEA R R++++ T ++ G S
Sbjct: 343 LENALL---DMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 156/429 (36%), Positives = 250/429 (58%), Gaps = 16/429 (3%)
Query: 44 HVYVQTALLKMY--GSLRCIDDAFKVFEKMPEK-----DIIAWNSMLDAFASCG-----Q 91
+V++ ++++ Y SL C D ++++++ K D + M + AS G +
Sbjct: 72 NVFLYNSIIRAYTHNSLYC--DVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGK 129
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
H L P V + N +I Y + + A +FD++ +DV+SWNSL+ Y
Sbjct: 130 QVHG-HLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARL 188
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G+M+KA +F M+ K +++W M++GY Y+E +D F EM+ ++PD +++ SVL
Sbjct: 189 GQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVL 248
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
+CA+LGSLE G IH+YA GL ALI+MY+KCG + Q++++F +++ KDV
Sbjct: 249 PSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVI 308
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
W+ MI G A HG + A + EM + VK + ITF+GLLSACSH GL Q+G + F M
Sbjct: 309 SWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMM 368
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
+D+ + K+EHYGC++D+L RA L+RA+E+ + MP +P I G+LLS+C +L++
Sbjct: 369 RQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDV 428
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
VA + G ++ AN+YA G+WE+ +R R ++ + KT G S+IEVN
Sbjct: 429 A-LVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVN 487
Query: 452 GSYHKFLAG 460
+F+AG
Sbjct: 488 NIVQEFVAG 496
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 41/311 (13%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D ++FP + K+ L S +G +HG K G HV + AL+ MY + DA KV
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F++M E+D+I+WNS+L +A GQM A L LM K + S+ MISGY IG A
Sbjct: 167 FDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAM 226
Query: 128 YIF----------DKVPAKDVVS------------W-----------------NSLILAY 148
F D++ V+ W N+LI Y
Sbjct: 227 DFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMY 286
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
+ G + +A ++F++ K+VI+W+TM++GY + F EM+ VKP+ +T
Sbjct: 287 SKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFL 346
Query: 209 SVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+LSAC+++G + G + + D + LID+ A+ G +E+++E+ V
Sbjct: 347 GLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPV 406
Query: 268 K-DVFCWNAMI 277
K D W +++
Sbjct: 407 KPDSKIWGSLL 417
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 115/246 (46%), Gaps = 33/246 (13%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK-PDYLTVTSV 210
G+M+ A +F ++ NV +N+++ Y + LY +V+ ++ ++ ++ PD T +
Sbjct: 56 GDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFM 115
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
+CA+LGS G ++H + G + ALIDMY K + + +VF + +DV
Sbjct: 116 FKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDV 175
Query: 271 FCWNAMILGLALHGY------------------------GYA-------ALKLLGEMNDS 299
WN+++ G A G GY A+ EM +
Sbjct: 176 ISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA 235
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
++ D+I+ I +L +C+H G ++ G + E+ G+ ++ ++++ + +L +
Sbjct: 236 GIEPDEISLISVLPSCAHLGSLELGKWIHMYAERR-GLLKQTGVCNALIEMYSKCGMLSQ 294
Query: 360 AIELIE 365
AI+L E
Sbjct: 295 AIQLFE 300
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 15/251 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D S +L + L S +G +H + G V AL++MY
Sbjct: 232 MQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGM 291
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+ A ++FE+ KD+I+W++M+ +A G A + M V I ++S
Sbjct: 292 LSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSA 351
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ +G FD + + + LI AG++E+A E+ K M VK +
Sbjct: 352 CSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSK 411
Query: 171 TWNTMVTG-YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-ANLGSLETGARIHV 228
W ++++ + L + +V + D + V+PD + +L+ A+LG E +R+
Sbjct: 412 IWGSLLSSCRTKGNLDVALVAM-DHLV--EVEPDDMGNYVLLANIYADLGKWEDVSRLRK 468
Query: 229 YATDNGLASNP 239
+ P
Sbjct: 469 IIRKENMKKTP 479
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 238/401 (59%), Gaps = 1/401 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +A ++F++MP+++++AW SM+ +A ++D A KL ++MP K+ ++ M+ GY R
Sbjct: 187 LSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRS 246
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+I+ A +F +P K V + N +I+ + GE+ KA +F +M K+ TW+ ++ Y
Sbjct: 247 GRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYE 306
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R +E + LF M+ V+P++ ++ S+LS C +L SL+ G ++H + + +
Sbjct: 307 RKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIY 366
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
++ LI MY KCG + VF + KD+ WN++I G A HG+G AL++ EM S
Sbjct: 367 VSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSG 426
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
D+ITFIG+LSAC + G V+EG E+F M+ + V +K EHY CMVDLLGRA L+ A
Sbjct: 427 AAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEA 486
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+ LIE MP E + GALLSAC H++L++ + AK + + S G ++ +NLYAS
Sbjct: 487 MNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLL-QLEPSSAGPYILLSNLYAS 545
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+W++ R M + K+ G S IEV+ H F GG
Sbjct: 546 QSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGG 586
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 149/328 (45%), Gaps = 43/328 (13%)
Query: 38 KTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMK 97
++ F + + + L ID A +F+ + K + +WN+++ + + A K
Sbjct: 9 RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68
Query: 98 LIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
L D MP ++ S+N ++SGY + G I AR +FDK+P ++VVSW S++ Y G +++A
Sbjct: 69 LFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEA 128
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRS-------QLY------------------------I 186
+F +M KNV++W M+ G + +L+
Sbjct: 129 ELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLS 188
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E ++FDEM NV + TS++S A ++ ++ D N TA++
Sbjct: 189 EAREIFDEMPQRNV----VAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAML 240
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
Y + G I ++ E+F VK V N MI+G L+G A + +M + DD
Sbjct: 241 KGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEK----DDG 296
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKD 334
T+ L+ G E LFS M+++
Sbjct: 297 TWSALIKIYERKGFELEALALFSLMQRE 324
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 14/190 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV + S +L G L+S G +H Q +++ F +YV + L+ MY ++C
Sbjct: 321 MQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMY--IKC 378
Query: 61 ID--DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMI 114
D +VF++ KDI+ WNS++ +A G + A+++ M D +F ++
Sbjct: 379 GDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVL 438
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVK-N 168
S GK+ IF+ + +K V + ++ AG++ +A + + M V+ +
Sbjct: 439 SACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEAD 498
Query: 169 VITWNTMVTG 178
I W +++
Sbjct: 499 AIVWGALLSA 508
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 154/470 (32%), Positives = 255/470 (54%), Gaps = 38/470 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M L + D + P +LK+ L +G LHG +K G +V+ +L+ MY
Sbjct: 129 MLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMY----- 183
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD----VTSFNIMISG 116
G++ ++L D P ++ + +N++I+G
Sbjct: 184 --------------------------VKIGELGFGLQLFDESPQRNKAESILLWNVLING 217
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
++G + A +F+ +P ++ SWNSLI + G++++A E+F +M KNV++W TM+
Sbjct: 218 CCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMI 277
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G+ ++ + + + +F M V+P+ LTV S L AC +G+L+ G RIH Y + NG
Sbjct: 278 NGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQ 337
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
N TAL+DMYAKCG+I+ + VF +++ KD+ W+ MI G A+HG AL+ +M
Sbjct: 338 LNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKM 397
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ + D++ F+ +L+ACSH+G V +G F M D+ + ++HY +VDLLGRA
Sbjct: 398 KSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGR 457
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFA 415
LD A+ I++MP P I GAL AC H+++E+ + A K++ + + G + +
Sbjct: 458 LDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKH--PGSYVFLS 515
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
N+YA+ G+WE+ R R +M + G+ K G S IEV G H F+AG H+
Sbjct: 516 NVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHV 565
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/319 (21%), Positives = 139/319 (43%), Gaps = 18/319 (5%)
Query: 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
++ +IH+ ++ + VV+ LI + + ++ A +F+ N+ +N ++
Sbjct: 54 PQLHQIHAQIFLHNLFSNSRVVT--QLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIR 111
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G + + V F M +++PD LT+ VL + A L + G +H GL
Sbjct: 112 GLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEF 171
Query: 238 NPHATTALIDMYAKCGSIEQSLEVF----YKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
+ +L+DMY K G + L++F +++ + + WN +I G G A L
Sbjct: 172 DSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLF 231
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
M + + ++ L++ G + ELF +M + V+ + M++ +
Sbjct: 232 EAMPER----NAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVS-----WTTMINGFSQ 282
Query: 354 ARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
++A+ + M E P + + + L AC L++G+R+ + + L+ G
Sbjct: 283 NGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGI 342
Query: 411 LMMFANLYASCGQWEEANR 429
++YA CG + A+R
Sbjct: 343 GTALVDMYAKCGNIKSASR 361
>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g45350, chloroplastic-like [Vitis vinifera]
Length = 704
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 270/498 (54%), Gaps = 35/498 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D +SF L+LKA L G+ +HG K V++Q L+ +Y C
Sbjct: 107 MLESGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGKMEIGSDVFLQNCLMCLYLRCGC 166
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFNIMISGYA 118
+ ++F++M +KD +++NSM+D + G + A +L D+MP+ K + S+N MIS YA
Sbjct: 167 LGIVRQLFDRMMKKDSVSFNSMIDGYVKHGMVKSAWELFDVMPMEQKILISWNSMISEYA 226
Query: 119 RI-GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
R ++ A +F+++P KD++SWNS+I G+ME +F +M + V++ MV
Sbjct: 227 RSEERLKVAWELFEEMPKKDLISWNSMINGCVKCGKMENDHHLFNRMPKRXVVSXANMVN 286
Query: 178 GYLR-------SQLYIEVVDL------------------------FDEMKAGNVKPDYLT 206
G+ + L++E+ ++ F +M + + D T
Sbjct: 287 GHAKLGEIDIARGLFVEMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNAT 346
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ LSA A LG + G +H Y DNG + + ALID YAKCGSI+ +L VF
Sbjct: 347 LLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDTYAKCGSIDNALSVFEDID 406
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K + WNA++ GLA+HG G A +L EM VK +DITFIG+L+AC+HAGLV+EG
Sbjct: 407 NKSIDHWNAILSGLAIHGLGEVAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLM 466
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F M++ V KL+HY CMVD+LG+A ++ + +E M EP + + LLSAC H
Sbjct: 467 CFELMKRVDKVEPKLQHYVCMVDILGQAGHVEETKKFVEKMSIEPNDVVWRTLLSACRNH 526
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
++ IG+ VAK + + +Y + ++ +N+YA G W + +R R MM + K G S
Sbjct: 527 ENFTIGEPVAKHLISVDSY-NLSSYVLLSNIYAGFGIWNDVHRIRMMMKQRDLKKIPGCS 585
Query: 447 VIEVNGSYHKFLAGGIGH 464
IE+ G+ HKF H
Sbjct: 586 QIELEGNVHKFFVRDKSH 603
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 41/243 (16%)
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
G ++K N WN ++ + + EV +F+ M V D + + VL AC+ L
Sbjct: 72 GRKYRKQ--DNSFIWNAIIKSFSHKEDPREVFVIFNLMLESGVCVDKFSFSLVLKACSRL 129
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
G ++ G +IH + S+ L+ +Y +CG + ++F + KD +N+MI
Sbjct: 130 GLIKEGMQIHGLLGKMEIGSDVFLQNCLMCLYLRCGCLGIVRQLFDRMMKKDSVSFNSMI 189
Query: 278 LGLALHGYGYAA------------------------------LKLLGEMNDSCVKADDIT 307
G HG +A LK+ E+ + K D I+
Sbjct: 190 DGYVKHGMVKSAWELFDVMPMEQKILISWNSMISEYARSEERLKVAWELFEEMPKKDLIS 249
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL--LDRAIELIE 365
+ +++ C G ++ LF+RM K R + MV+ G A+L +D A L
Sbjct: 250 WNSMINGCVKCGKMENDHHLFNRMPK-----RXVVSXANMVN--GHAKLGEIDIARGLFV 302
Query: 366 AMP 368
MP
Sbjct: 303 EMP 305
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 170/505 (33%), Positives = 268/505 (53%), Gaps = 44/505 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V ++ P + K+ L + +G +H I+ GF V+ Q AL+ Y +
Sbjct: 87 MHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKIND 146
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +F+ + KD IA+N ++ A++ G++ A +L D M + + S+N MIS YA+
Sbjct: 147 LGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQN 206
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILA--------------------------------- 147
G H IF ++ ++ N + LA
Sbjct: 207 GDYHKGWIIFQRM-QDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIV 265
Query: 148 -------YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
Y G ++ +F M ++V+TW+ M+ GY ++ E ++LF+ MK+ +
Sbjct: 266 STAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQI 325
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KP+ +T+ SVLSACA LGS+ETG RI Y GL SN + +AL+ MY+KCG+I ++ +
Sbjct: 326 KPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQ 385
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F K +D WN+MI+GLA++G+ A+ L M + VK ++ITF+GL++AC+HAG
Sbjct: 386 IFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGH 445
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA-RLLDRAIELIEAMPFEPTESILGAL 379
V+ G E F M D ++ +EH+ C+VDL R+ RL+D A E I M EP I G L
Sbjct: 446 VELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLID-AYEFICRMEVEPNVVIWGTL 504
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
LSA IH ++E+ + K + S G ++ +N+YAS G+W+EA + R +M D +
Sbjct: 505 LSASRIHLNVELAELAGKKLLELEPDNS-GNYVILSNIYASAGRWQEALKVRKLMKDKRV 563
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGH 464
K A S +EV HKFL G H
Sbjct: 564 QKAAAYSWVEVEDRVHKFLVGDTSH 588
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 114/276 (41%), Gaps = 43/276 (15%)
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
NA ++ A ++F ++ + + +T Y R L E + F M NV+ T+
Sbjct: 42 NASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPP 101
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+ +CA+L +++ G ++H G S+ ALI+ YAK + + +F VKD
Sbjct: 102 IFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKD 161
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+N +I + G AA +L +M D + +++ ++S + G +G +F
Sbjct: 162 TIAYNCLISAYSRSGEVLAARELFDKMRDRSI----VSWNAMISCYAQNGDYHKGWIIFQ 217
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
RM+ + C EP E L +LS C DL
Sbjct: 218 RMQDEM----------C-----------------------EPNEITLATVLSICAKLGDL 244
Query: 390 EIGDRVAKMVCAK---SNYLSDGELMMFANLYASCG 422
E+G R+ K+ K SN + ++ +Y CG
Sbjct: 245 EMGLRIKKLNDNKNLGSNMIVSTAML---EMYVKCG 277
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 154/427 (36%), Positives = 250/427 (58%), Gaps = 3/427 (0%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ++Y+FPL+ K + S G +H +K GF ++V+ + ++ Y DA
Sbjct: 154 VLPNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDAR 213
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
VF+ D+++WNSM+D + G++ A ++ D M +D+ ++N MISGY +G + +
Sbjct: 214 MVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEA 273
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FDK+P++DVVSWN +I + ++ A + F +M ++NV++WN M+ YLR + Y
Sbjct: 274 ARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKY 333
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ + FD M G+ PD ++ SVL+ACA L L+ G +H Y DNG+ + +TAL
Sbjct: 334 SDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTAL 393
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
+ MYAKCG+++ + EVF K K V WN+MI+G +HG+G AL++ EM +D
Sbjct: 394 LTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPND 453
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
TF+ +LSACSH+G+V G F M + + + K EHYGC+VDLLG+A L + + +L
Sbjct: 454 ATFMSVLSACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLLGQAGLKEPSEDLTR 513
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYASCGQW 424
E ++ G LLSAC H E G+ +AK ++ N++ ++ +N Y + G+W
Sbjct: 514 KTHTEVEPTLWGDLLSACRAHCISEPGEILAKQLIKLFPNHVV--PYLLLSNTYVAEGRW 571
Query: 425 EEANRWR 431
++ R
Sbjct: 572 DDVENLR 578
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 47/285 (16%)
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
+++M A V P++ T V CA++GSL G ++H G + + I Y+
Sbjct: 146 YEKMIAKWVLPNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSV 205
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
CG + VF V D+ WN+MI G +G L L E+ D + D T+ +
Sbjct: 206 CGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNG----ELGLAREIFDEMYERDIFTWNSM 261
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP--- 368
+S G ++ LF +M +R + + CM+D R + + A + + MP
Sbjct: 262 ISGYVGVGDMEAARGLFDKMP-----SRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRN 316
Query: 369 -------------------------------FEPTESILGALLSACVIHQDLEIGDRVAK 397
F P E+ L ++L+AC + L+ G V
Sbjct: 317 VVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHS 376
Query: 398 MVCAKSNYLSDGELMMFA--NLYASCGQWEEANRWRNMMNDTGIV 440
+ K N + L+ A +YA CG + A + M + +V
Sbjct: 377 YM--KDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVV 419
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 260/478 (54%), Gaps = 21/478 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ + V D ++ +K+ + +G + K GF +V +L+ MY S
Sbjct: 162 LDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGD 221
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
+ A +F + K +IAWN+M+ + G +++ M P +VT ++ +
Sbjct: 222 VVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVA-T 280
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVIT 171
R+G + ++I + K ++ +L A Y GE++KA +F +M ++V+
Sbjct: 281 ACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVA 340
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W+ M++GY +S E + +F+EM+ V P+ +T+ SVLSACA LG+LETG +H Y
Sbjct: 341 WSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIR 400
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
L TAL+D YAKCG I+ +++ F V++ + W A+I G+A +G AL+
Sbjct: 401 RKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALE 460
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L M ++ ++ D+TFIG+L ACSH LV+EG F+ M +D+G+ ++EHYGCMVDLL
Sbjct: 461 LFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLL 520
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV-----CAKSNYL 406
GRA L+D A + I MP EP + ALLSAC +H+++EIG+ K + C NY+
Sbjct: 521 GRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYI 580
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N YAS GQW+ A R M + G+ K G S+IE+ G+ +F A H
Sbjct: 581 ------LLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEH 632
>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
Length = 674
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 159/418 (38%), Positives = 243/418 (58%), Gaps = 7/418 (1%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
TA++K Y D+A K+F +MP++++ +WN+M+ +++ A KL LMPL++
Sbjct: 228 TAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAV 287
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+ IM+SG AR G AR FD++P KD+ +WN++I AY + + +A E+F M +N
Sbjct: 288 SWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERN 347
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++TWN M+ GY R + E + M ++P+ T+T +L++C G LE + H
Sbjct: 348 IVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSC--WGMLEL-MQAHA 404
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
A G + ALI MY++ G I S F + KDV W AM+L HG+G
Sbjct: 405 LAIVVGCECETSLSNALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDH 464
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL + G M S K D+ITF+G+LSACSHAGLV++G +LF M + +G+ + EHY C+V
Sbjct: 465 ALHVFGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLV 524
Query: 349 DLLGRARLLDRAIELIEAMP-FEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYL 406
D+LGRA + A++++ MP E ++LGALL AC +H ++E+ D + K++ + N
Sbjct: 525 DILGRAGQVHEAMDVVWKMPECERDGAVLGALLGACRLHGNVEMADYIGQKLIELQPN-- 582
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G ++ AN++A+ G W+E R M D + K G S IEV G H F AG H
Sbjct: 583 SSGGYVLLANVFAARGNWDEFAEVRKKMKDRNVRKVPGFSQIEVKGKCHAFFAGDKSH 640
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 152/290 (52%), Gaps = 16/290 (5%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
+ ++A++ Y +D A KVF+ M + ++ +W S++ + GQ+ A +L D MP
Sbjct: 131 IVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPA 190
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K+V S+ M+ GYAR G I AR +F+++P K+ +SW +++ +Y + G ++A ++F +M
Sbjct: 191 KNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEM 250
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+N+ +WNTM++G L + E LF M N ++ T ++S A G +
Sbjct: 251 PQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNA----VSWTIMVSGLARNGFTKLAR 306
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+ +A+ TA +D +C +E S E+F +++ WNAMI G A H
Sbjct: 307 EYFDQMPNKDIAAWNAMITAYVD---ECLIVEAS-ELFNLMTERNIVTWNAMIDGYARHR 362
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSAC--------SHAGLVQEGCE 326
A+K L M SC++ ++ T +L++C +HA + GCE
Sbjct: 363 PDGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCE 412
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 177/365 (48%), Gaps = 23/365 (6%)
Query: 59 RC--IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
RC + A K+F++MP D +++ +M+ A+ ++ A KL MP + + + + MI G
Sbjct: 81 RCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDG 140
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
YA+ G + SA+ +FD + +V SW SLI Y G++ KA ++F +M KNV++W TMV
Sbjct: 141 YAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMV 200
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY R+ L + +F++M N ++ T+++ + + G + ++ L
Sbjct: 201 LGYARNGLIDQARSVFNQMPEKNT----ISWTAMMKSYVDNGRTDEALKLFHEMPQRNLY 256
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
S + +D + ++ ++F+ +++ W M+ GLA +G+ A + +M
Sbjct: 257 SWNTMISGCLD----GKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQM 312
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ + A + + C L+ E ELF+ M + R + + M+D R R
Sbjct: 313 PNKDIAAWNAMITAYVDEC----LIVEASELFNLMTE-----RNIVTWNAMIDGYARHRP 363
Query: 357 LDRAIE---LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV-CAKSNYLSDGELM 412
A++ L+ P E+ + +L++C +L +A +V C LS+ +
Sbjct: 364 DGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALIT 423
Query: 413 MFANL 417
M++ +
Sbjct: 424 MYSRI 428
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 22 ILSSSCIGLM----LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDII 77
I+ +SC G++ H I G + AL+ MY + I + FE + KD++
Sbjct: 388 IILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSRIGDISSSRIAFESLKAKDVV 447
Query: 78 AWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISGYARIGKIHSARYIFDKV 133
+W +ML AF G DHA+ + M D +F ++S + G + + +FD +
Sbjct: 448 SWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSM 507
>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 907
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 258/474 (54%), Gaps = 38/474 (8%)
Query: 29 GLMLHGQTIKTG------FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSM 82
G HG+ ++ C +V A++ Y ID+A K+F++ P KD ++W +M
Sbjct: 244 GFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTM 303
Query: 83 LDAFASCGQMDHAMKLIDLMPLKDVTS-------------------------------FN 111
++ + G++D A ++ + MP KDV + +N
Sbjct: 304 INGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWN 363
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
MI+GY + G++ A +F ++P K+ VSWN++I Y AGEM++A E+F+ M V+NVI+
Sbjct: 364 SMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVIS 423
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN+++TG+L++ LY++ + M KPD T LS+CANL +L+ G ++H
Sbjct: 424 WNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELIL 483
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+G ++ + ALI MYAKCG ++ + +VF + D+ WN++I G AL+GY A
Sbjct: 484 KSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFW 543
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+M+ D++TFIG+LSACSHAGL +G +LF M + F + EHY C+VDLL
Sbjct: 544 AFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLL 603
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GR L+ A ++ M + + G+LL+AC +H+++E+G ++A + + +
Sbjct: 604 GRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELG-KIAALRLLELEPHNASNY 662
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
+ +N++A G+WE+ R R +M + K G S IEV F++ G L
Sbjct: 663 ITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIEVQNQIQNFVSDDPGKL 716
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 26/387 (6%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y DDA KVFEKMP KD++++NSML + G+M AMK + M ++V
Sbjct: 146 NAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVV 205
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N+M++G+ + SA +F+K+P + VSW +++ + G++ +A ++F +M KN
Sbjct: 206 SWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKN 265
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V++WN M+ Y++ E V LF E D ++ T++++ +G L+ ++
Sbjct: 266 VVSWNAMIAAYVQDLQIDEAVKLFKETPY----KDCVSWTTMINGYVRVGKLDEAREVYN 321
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+A A TAL+ + G I+++ +VF + +D CWN+MI G G
Sbjct: 322 QMPYKDVA----AKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSE 377
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL L +M VK + +++ ++S + AG + E+F M GV + +
Sbjct: 378 ALNLFRQMP---VK-NAVSWNTMISGYAQAGEMDRATEIFEAM----GVRNVISWNSLIT 429
Query: 349 DLLGRARLLD--RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
L LD +++ L+ +P +S LS+C L++G ++ +++ KS Y+
Sbjct: 430 GFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELIL-KSGYI 488
Query: 407 SDGELMMFAN----LYASCGQWEEANR 429
+D + +N +YA CG + A +
Sbjct: 489 ND---LFVSNALIAMYAKCGGVQSAEK 512
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 162/361 (44%), Gaps = 52/361 (14%)
Query: 74 KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV 133
K++ N + G++D A ++ + K+ ++N M++ +A+ G++ AR +FDK+
Sbjct: 15 KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKM 74
Query: 134 PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD 193
+++VSWN++I Y + +E+A ++F M ++ +W M+T Y R + + +LF+
Sbjct: 75 SQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFE 134
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
+ PD L +AC N A+I YAK G
Sbjct: 135 ------LVPDKLD-----TACWN---------------------------AMIAGYAKKG 156
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+ + +VF K VKD+ +N+M+ G +G A+K M + V + ++ G ++
Sbjct: 157 RFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVN 216
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
C + ELF ++ V+ + M+ R + A +L + MP +
Sbjct: 217 NCD----LGSAWELFEKIPDPNAVS-----WVTMLCGFARHGKIVEARKLFDRMPCKNVV 267
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
S A+++A V QDL+I + V + ++ Y N Y G+ +EA N
Sbjct: 268 S-WNAMIAAYV--QDLQIDEAVK--LFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQ 322
Query: 434 M 434
M
Sbjct: 323 M 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G D +F L + L++ +G LH +K+G+ ++V AL+ MY
Sbjct: 447 MGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGG 506
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
+ A KVF+ + D+I+WNS++ +A G + A + M + D +F M+S
Sbjct: 507 VQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSA 566
Query: 117 YARIG 121
+ G
Sbjct: 567 CSHAG 571
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 148/347 (42%), Positives = 219/347 (63%), Gaps = 4/347 (1%)
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y + G + AR IFD++P K+V+ W S++ Y N GE++KA E+F++ VK+V+ W M+
Sbjct: 2 YCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMI 61
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY++ + E V LF EM+ VKPD + ++L+ CA +G+LE G IH Y + G+
Sbjct: 62 NGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIP 121
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ T+LI+MY+KCG IE++L +F + KD W ++I GLA++G AL+L +M
Sbjct: 122 VDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKM 181
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
D++TFIG+LSACSH GLV+EG E F+ M + + KLEHYGC++DLLGRA
Sbjct: 182 KQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQ 241
Query: 357 LDRAIELIEAMPFEPTESIL---GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
LD A ELI+ + E I+ G+LLSAC I++++++G+RVA+ + K +
Sbjct: 242 LDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQL-VKIESRDSSVHTL 300
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
AN+YAS G+W + NR R M D G+ K G S IEV+G H+FL G
Sbjct: 301 LANIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIEVDGIVHEFLVG 347
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 110/230 (47%), Gaps = 9/230 (3%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V T+++ Y + +D A ++FE+ P KD++ W +M++ + D A+ L M
Sbjct: 22 NVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQ 81
Query: 104 LKDVTSFNI----MISGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEME 155
++ V +++G A++G + +I + K D V SLI Y+ G +E
Sbjct: 82 IQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIE 141
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
KA +F + K+ TW +++ G + + ++LF +MK PD +T VLSAC+
Sbjct: 142 KALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGVLSACS 201
Query: 216 NLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+ G +E G T + LID+ + G ++++ E+ K
Sbjct: 202 HGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAEELIKK 251
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 9/177 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + LL + + G +HG + G V T+L++MY C
Sbjct: 80 MQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGC 139
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
I+ A ++F + EKD W S++ A G+ A++L M + D +F ++S
Sbjct: 140 IEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGVLSA 199
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ G + R F+ + + + + LI AG++++A E+ KK++ N
Sbjct: 200 CSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAEELIKKIVNAN 256
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 166/484 (34%), Positives = 253/484 (52%), Gaps = 64/484 (13%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TALL Y R +D+A +F++MPE+++++WN+ML+A+AS G+M A L D MP
Sbjct: 101 NVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMP 160
Query: 104 LKDVTSFNI-------------------------------MISGYARIGKIHSARYIFDK 132
++D S+NI MISG AR G AR +FD
Sbjct: 161 VRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDG 220
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P ++VVSWN++I Y +++A ++F M ++V +WN M+TG+++++ + +LF
Sbjct: 221 MPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELF 280
Query: 193 DEMKAGNV-------------------------------KPDYLTVTSVLSACANLGSLE 221
DEM NV +P+ +T + A +NL L
Sbjct: 281 DEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLS 340
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G ++H + ++L+ +YAKCG I + +VF S KDV WN MI A
Sbjct: 341 EGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYA 400
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
HG G A+ L +M ++ K +D+T++GLLSACSH+GLV EG +F M KD + +
Sbjct: 401 HHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRD 460
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTES-ILGALLSACVIHQDLEIGDRVAKMVC 400
EHY C++DL RA LD A LI + +PT S + ALL C H + IGD A+ +
Sbjct: 461 EHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLL 520
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
++ + G + +N+YAS G+W+EA + R+ MND G+ K G S IE+ H F+A
Sbjct: 521 -EAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIELANKVHVFVAR 579
Query: 461 GIGH 464
H
Sbjct: 580 DKSH 583
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 146/272 (53%), Gaps = 13/272 (4%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-PLKDVTSFNIMISGYAR 119
+ DA ++F++ P++D+++W +M+ A+A GQ+ A L+ ++V ++ ++SGYAR
Sbjct: 55 VPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRPDARRNVVTWTALLSGYAR 114
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
++ AR +FD++P ++VVSWN+++ AY +AG M A +F M V++ +WN ++
Sbjct: 115 ARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAAL 174
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+RS E LF+ M NV ++ T+++S A GS + + D N
Sbjct: 175 VRSGTMDEARRLFERMPERNV----MSWTTMISGLARSGSADEARALF----DGMPERNV 226
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ A+I YA+ I+++L++F +DV WN MI G + LK E+ D
Sbjct: 227 VSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQN----KDLKKAQELFDE 282
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
K + +++ +++ C + ++F+ M
Sbjct: 283 MPKRNVVSWTTMMNGCLQGNESEMALQVFNGM 314
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 127/263 (48%), Gaps = 18/263 (6%)
Query: 107 VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-L 165
V N I+ A G++ AR +FD+ P +DVVSW +++ AY G++ +A + +
Sbjct: 39 VQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRPDA 98
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+NV+TW +++GY R++ E LFD M NV ++ ++L A A+ G + GA
Sbjct: 99 RRNVVTWTALLSGYARARRVDEARALFDRMPERNV----VSWNTMLEAYASAGRM--GAA 152
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
++ D + + L+ + G+++++ +F + ++V W MI GLA G
Sbjct: 153 CALF--DGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGS 210
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
A L M + V +++ ++S + + E +LF M + R + +
Sbjct: 211 ADEARALFDGMPERNV----VSWNAMISGYARNLRIDEALDLFMNMPE-----RDVASWN 261
Query: 346 CMVDLLGRARLLDRAIELIEAMP 368
M+ + + L +A EL + MP
Sbjct: 262 IMITGFIQNKDLKKAQELFDEMP 284
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 16/245 (6%)
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
H A +F V N I AG + A +F + ++V++W MV Y R
Sbjct: 25 HGAAAVFSTDAFSHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQG 84
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E L A + + +T T++LS A ++ + D N +
Sbjct: 85 QLHEASALLHRPDA---RRNVVTWTALLSGYARARRVDEARALF----DRMPERNVVSWN 137
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
+++ YA G + + +F V+D WN ++ L G A +L M + V
Sbjct: 138 TMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNV-- 195
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+++ ++S + +G E LF M + R + + M+ R +D A++L
Sbjct: 196 --MSWTTMISGLARSGSADEARALFDGMPE-----RNVVSWNAMISGYARNLRIDEALDL 248
Query: 364 IEAMP 368
MP
Sbjct: 249 FMNMP 253
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 22/251 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + +F + A L+ G +H KT F +++++L+K+Y I A
Sbjct: 318 GIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLA 377
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYAR 119
KVF+ EKD+I+WN M+ A+A G A+ L + M DVT + +S +
Sbjct: 378 RKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGL-LSACSH 436
Query: 120 IGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK--NVITW 172
G + IF DK A ++ LI + AG ++ A + + +K + W
Sbjct: 437 SGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVW 496
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNV---KPDYLTVTSVLSAC-ANLGSLETGARIHV 228
+ ++ G + ++ A N+ +PD ++LS A+ G + A+I
Sbjct: 497 SALLGG-----CNAHGNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRS 551
Query: 229 YATDNGLASNP 239
D GL P
Sbjct: 552 EMNDRGLKKQP 562
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 169/472 (35%), Positives = 271/472 (57%), Gaps = 15/472 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ LG+ A+N+++P L A G + G + H K G G YV +L+ MY RC
Sbjct: 119 LKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYA--RC 176
Query: 61 IDDAF--KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMI 114
+ F KVF++M ++D+++WNSM+ ++ G A+ L M + D + ++
Sbjct: 177 GEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVL 236
Query: 115 SGYARIGKIHSARYIFDKVPAK--DVVSW--NSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+G + R++ V K +V S+ ++LI Y G++ A +F M K+V+
Sbjct: 237 GACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVV 296
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TWN ++TGY ++ E + LF+ M+ PD +T+ VLSAC+ +G+L+ G + +A
Sbjct: 297 TWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHA 356
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
++ GL + + +ALIDMYAKCGS++ ++ VF K+ WNAMI LA HG AL
Sbjct: 357 SEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEAL 416
Query: 291 KLLGEM--NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
L M ++ V+ +DITFIG+LSAC HAGLV EG +LF M FG+ K+EHY CMV
Sbjct: 417 SLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMV 476
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DL RA LL A +LI+ MP +P E +LG+LL AC ++ ++G+RV ++ + +
Sbjct: 477 DLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFL-EMELSNS 535
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G ++ + +YA+ +W+++ + R +M G+ KT G S I++ H+F AG
Sbjct: 536 GNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAG 587
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 161/330 (48%), Gaps = 13/330 (3%)
Query: 67 VFEKMPEKDIIAWNSMLDAFAS-------CGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
VF ++ + +I A+N ML A+ C ++ + +K + L F + G R
Sbjct: 83 VFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVR 142
Query: 120 IGKIHSAR---YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
G +H +F D +SLI Y GEM A ++F +M +++++WN+M+
Sbjct: 143 -GLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMI 201
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+GY + E + LF EM+ +PD +T+ SVL AC +LG L G + + + +
Sbjct: 202 SGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKME 261
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
N + +ALIDMY KCG + + VF KDV WNA+I G A +G A+ L M
Sbjct: 262 VNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGM 321
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
++ D +T I +LSACS G + G + + G+ + ++D+ +
Sbjct: 322 REAGPHPDRVTMIEVLSACSTIGALDLG-KWVETHASEKGLQHDVYVASALIDMYAKCGS 380
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIH 386
LD A+ + E+MP + E A++SA H
Sbjct: 381 LDDAVRVFESMPHK-NEVSWNAMISALAFH 409
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 153/405 (37%), Positives = 232/405 (57%), Gaps = 12/405 (2%)
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+ FE+M E+D+++WN M+D F G ++ + + + +P + S+ M+ G+AR GKI
Sbjct: 78 LQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIA 137
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
AR +FD++P ++VV+WN++I AY +++A +F +M KN I+W T++ GY+R
Sbjct: 138 EARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGK 197
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E L ++M N KPD T LS+CA+L +L+ G ++H +G A++ + A
Sbjct: 198 LDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNA 256
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LI MYAKCGSI + +F DV WN++I AL+G G ALKL +M V D
Sbjct: 257 LITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPD 316
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
++TF+G+LSACSH GL+ +G +LF M + + + EHY CMVDLLGRA L+ A +L+
Sbjct: 317 EVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLV 376
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC-----AKSNYLSDGELMMFANLYA 419
M I GALL AC IH +LE+ A+ + SNY+ + +N+ A
Sbjct: 377 RGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYV------LLSNMQA 430
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+W+E R R +M + G K G S IE+ H FL+ H
Sbjct: 431 EAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAH 475
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 130/248 (52%), Gaps = 17/248 (6%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGY 117
+D+A +F +MPEK+ I+W ++++ + G++D A +L++ MP + D ++F +S
Sbjct: 167 VDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSC 226
Query: 118 ARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
A + + + + V A D+ N+LI Y G + A +FK + +V++WN
Sbjct: 227 AHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWN 286
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH---VYA 230
+++ Y + E + LF +M+ V PD +T +LSAC+++G ++ G ++ V A
Sbjct: 287 SLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQA 346
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG----Y 285
+ + +A ++D+ + G +E++ ++ ++ + W A++ +HG
Sbjct: 347 YNIEPLAEHYA--CMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELA 404
Query: 286 GYAALKLL 293
+AA KLL
Sbjct: 405 KFAAEKLL 412
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 124/286 (43%), Gaps = 28/286 (9%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+I YT GE+ KA +F + K N + N MV GY +++ + E LFD M A
Sbjct: 1 MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK---- 56
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D ++ S+L+ G + G + + + S ++D + + G + S E F
Sbjct: 57 DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVS----WNLMVDGFVEVGDLNSSWEFF 112
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
K + W M+ G A G A +L +M V A + + C V
Sbjct: 113 EKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCH----VD 168
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF--EPTESILGALL 380
E LF M + ++ + +++ R LD A +L+ MP+ +P +S L
Sbjct: 169 EAISLFMEMPEKNSIS-----WTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGL 223
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN----LYASCG 422
S+C L++G ++ ++V KS Y +D + +N +YA CG
Sbjct: 224 SSCAHLAALQVGKQLHQLV-MKSGYATD---LFVSNALITMYAKCG 265
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 13/243 (5%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D +F L + L++ +G LH +K+G+ ++V AL+ MY I A +
Sbjct: 214 PDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELL 273
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKI 123
F+ + D+++WNS++ A+A G A+KL M ++ D +F ++S + +G I
Sbjct: 274 FKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLI 333
Query: 124 HSARYIFD-KVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVT 177
+F V A ++ + ++ AG +E+A ++ + M + N W ++
Sbjct: 334 DQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALL- 392
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-ANLGSLETGARIHVYATDNGLA 236
G R +E+ E K +P + +LS A G + AR+ + G
Sbjct: 393 GACRIHGNLELAKFAAE-KLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAE 451
Query: 237 SNP 239
P
Sbjct: 452 KQP 454
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 164/497 (32%), Positives = 265/497 (53%), Gaps = 41/497 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+ +FP LLKA L G + G + GF V+V A + + +A K+
Sbjct: 118 PDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKL 177
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM---------------------PLKD 106
F+ +D+++WN+++ + G A+++ M L+D
Sbjct: 178 FDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRD 237
Query: 107 -------------------VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
V N+++ Y + G + A+ +F+ + K +VSW ++I+
Sbjct: 238 LELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVG 297
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G M+ A ++F +M ++V WN ++TGY++ + E + LF +M+ V+PD +T+
Sbjct: 298 YAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITM 357
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
++LSAC+ LG+LE G +H Y ++ + T L+DMY+KCG+IE+++ VF +
Sbjct: 358 VNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPE 417
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
K+ W AMI GLA HG+ A+K M + ++ D+ITFIG+LSAC HAGLV+EG E
Sbjct: 418 KNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEF 477
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
FS M + + RK++HY CMVDLLGRA LD A L+ MP EP + GAL AC +H
Sbjct: 478 FSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHG 537
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++ +G++ A M + + G ++ AN+YA ++A++ R MM G+ K G S
Sbjct: 538 NITLGEKAA-MKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSC 596
Query: 448 IEVNGSYHKFLAGGIGH 464
IE+NG H+F+ H
Sbjct: 597 IELNGVVHEFIVKDKSH 613
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 2/170 (1%)
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+ +PD+LT +L ACA L G + G ++ A + A C S+ ++
Sbjct: 115 SARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEA 174
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSH 317
++F S V+D+ WN +I G G AL++ M D V D++T IG++S +
Sbjct: 175 RKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQ 234
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
++ G L +E GV + ++D+ + L+RA + E +
Sbjct: 235 LRDLELGRRLHGYVES-HGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGI 283
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE V D+ + LL A L + +G+ +H + V + T L+ MY
Sbjct: 345 MQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGN 404
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMK----LIDLMPLKDVTSFNIMISG 116
I+ A +VF+++PEK+ + W +M+ A+ G D A+K +I+L D +F ++S
Sbjct: 405 IEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSA 464
Query: 117 YARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + + F + +K + ++ ++ AG +++A + M ++ + +
Sbjct: 465 CCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAV 524
Query: 171 TWNTM 175
W +
Sbjct: 525 VWGAL 529
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 262/472 (55%), Gaps = 10/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV+ D ++ P +LKA + +G +HGQ + GF V+VQ L+ +Y
Sbjct: 160 MQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGR 219
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
++ A VFE + +++I++W SM+ + G A+++ M ++V I ++
Sbjct: 220 VEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRA 279
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVITW 172
Y + + + I V + L+++ Y G++ A F +M + NV+ W
Sbjct: 280 YTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMW 339
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M++GY ++ E V LF EM + N++ D +TV S + ACA +GSL+ + Y
Sbjct: 340 NAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINK 399
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
++ TALIDM+AKCGS++ + EVF ++ KDV W+AMI+G LHG G A+ L
Sbjct: 400 TEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDL 459
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M + V +D+TF+GLL+AC+H+GLV+EG ELF M K +G+ + +HY C+VDLLG
Sbjct: 460 FYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLG 518
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R+ L+ A + I MP EP S+ GALL AC I++ + +G+ A+ + + + + G +
Sbjct: 519 RSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPF-NTGHYV 577
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+NLYAS W+ + R +M + G+ K G S+IE+NG F G H
Sbjct: 578 QLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSH 629
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 147/298 (49%), Gaps = 12/298 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H Q + +G ++ T + ++ I A KVF++ PE + WN+++ ++S
Sbjct: 90 IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNF 149
Query: 92 MDHAMKLIDLMPLKDVTSFNIMI-------SGYA--RIGK-IHSARYIFDKVPAKDVVSW 141
A+++ M V + SG +GK +H IF DV
Sbjct: 150 FGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQ--IFRLGFESDVFVQ 207
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N L+ Y G +E+A +F+ + +N+++W +M++GY ++ L +E + +F +M+ NVK
Sbjct: 208 NGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVK 267
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD++ + SVL A ++ LE G IH GL P +L MYAKCG + +
Sbjct: 268 PDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSF 327
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
F + ++ +V WNAMI G A +GY A+ L EM ++ D IT + AC+ G
Sbjct: 328 FDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVG 385
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%)
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
N GE+ A ++F + +V WN ++ GY + + ++++ M+A V PD T+
Sbjct: 115 NIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPC 174
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
VL AC+ + LE G R+H G S+ L+ +YAKCG +EQ+ VF ++
Sbjct: 175 VLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRN 234
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ W +MI G +G AL++ G+M VK D I + +L A + +++G
Sbjct: 235 IVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQG 289
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 156/435 (35%), Positives = 236/435 (54%), Gaps = 32/435 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I +A + F+ M +D+++WN+++ +A G++D A +L D P++DV ++ M+SGY +
Sbjct: 235 IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQN 294
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR +FDK+P ++ VSWN+++ Y ME A E+F M +NV TWNTM+TGY
Sbjct: 295 RMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYA 354
Query: 181 RSQLYIEVVDLFDEMKAGNV-------------------------------KPDYLTVTS 209
+ E +LFD+M + + + + +S
Sbjct: 355 QCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
LS CA++ +LE G ++H G + AL+ MY KCGSIE++ ++F + KD
Sbjct: 415 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD 474
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WN MI G + HG+G AL+ M +K DD T + +LSACSH GLV +G + F
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M +D+GV +HY CMVDLLGRA LL+ A L++ MPFEP +I G LL A +H +
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 594
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E+ + A + A S G ++ +NLYAS G+W + + R M D G+ K G S IE
Sbjct: 595 ELAETAADKIFAMEPENS-GMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653
Query: 450 VNGSYHKFLAGGIGH 464
+ H F G H
Sbjct: 654 IQNKTHTFSVGDEFH 668
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 149/287 (51%), Gaps = 12/287 (4%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
+L Y C+DDA VF++MPEK+ ++WN++L A+ +M+ A L +
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N ++ G+ + KI AR FD + +DVVSWN++I Y +G++++A ++F + V++
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQD 280
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW MV+GY+++++ E +LFD+M N +S A L G R+ +
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERN----------EVSWNAMLAGYVQGERMEM 330
Query: 229 YAT--DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
D N +I YA+CG I ++ +F K +D W AMI G + G+
Sbjct: 331 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+ AL+L +M + + +F LS C+ ++ G +L R+ K
Sbjct: 391 FEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 437
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 186/372 (50%), Gaps = 28/372 (7%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A K+F++MPE+D+++WN M+ + + A +L ++MP +DV S+N M+SGYA+ G +
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
AR +FD++P K+ VSWN+L+ AY +ME+A +FK +++WN ++ G+++ +
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKK 233
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
+E FD M NV+ D ++ ++++ A G ++ ++ D + T
Sbjct: 234 KIVEARQFFDSM---NVR-DVVSWNTIITGYAQSGKIDEARQLF----DESPVQDVFTWT 285
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
A++ Y + +E++ E+F K ++ WNAM+ G + G +++ E+ D
Sbjct: 286 AMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGY-VQG---ERMEMAKELFDVMPCR 341
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+ T+ +++ + G + E LF +M K V+ + M+ ++ A+ L
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS-----WAAMIAGYSQSGHSFEALRL 396
Query: 364 IEAMPFEP---TESILGALLSACVIHQDLEIGD----RVAKMVCAKSNYLSDGELMMFAN 416
M E S + LS C LE+G R+ K ++ + L+M
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLM--- 453
Query: 417 LYASCGQWEEAN 428
Y CG EEAN
Sbjct: 454 -YCKCGSIEEAN 464
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 17/299 (5%)
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
K + DI WN + ++ G+ + A+++ MP S+N MISGY R G+ AR +
Sbjct: 58 KCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKL 117
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FD++P +D+VSWN +I Y + KA E+F+ M ++V +WNTM++GY ++ +
Sbjct: 118 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDAR 177
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
+FD M N ++ ++LSA +E + + L S L+ +
Sbjct: 178 SVFDRMPEKND----VSWNALLSAYVQNSKMEEACMLFKSRENWALVS----WNCLLGGF 229
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
K I ++ + F V+DV WN +I G A G A +L D D T+
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF----DESPVQDVFTWT 285
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++S +V+E ELF +M + V+ + M+ + ++ A EL + MP
Sbjct: 286 AMVSGYIQNRMVEEARELFDKMPERNEVS-----WNAMLAGYVQGERMEMAKELFDVMP 339
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 12/254 (4%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C +V ++ Y I +A +F+KMP++D ++W +M+ ++ G A++L
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQ 399
Query: 102 MPLK----DVTSFNIMISGYA-----RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152
M + + +SF+ +S A +GK R + V N+L+L Y G
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG-NALLLMYCKCG 458
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+E+A ++FK+M K++++WNTM+ GY R + F+ MK +KPD T+ +VLS
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Query: 213 ACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DV 270
AC++ G ++ G + + D G+ N ++D+ + G +E + + + D
Sbjct: 519 ACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA 578
Query: 271 FCWNAMILGLALHG 284
W ++ +HG
Sbjct: 579 AIWGTLLGASRVHG 592
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G + SF L + + +G LHG+ +K G+ +V ALL MY
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGS 459
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
I++A +F++M KDI++WN+M+ ++ G + A++ + M + D + ++S
Sbjct: 460 IEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSA 519
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + R F + V NS ++ AG +E A + K M + +
Sbjct: 520 CSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAA 579
Query: 171 TWNTMV 176
W T++
Sbjct: 580 IWGTLL 585
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 250/394 (63%), Gaps = 8/394 (2%)
Query: 56 GSLRC--IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFN 111
G ++C ++ A +VF++MP ++ ++W++M+ +A+ G++D A ++ D MP ++V ++N
Sbjct: 33 GYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWN 92
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
M++G+AR G + AR +FD++P +++VSWN+++ Y+ +M+ A E+F M K+V++
Sbjct: 93 SMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVS 152
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
W M++GY ++ Y + ++LF M+ NV+P+ +T+ SVLSACANL +LE G +H +
Sbjct: 153 WTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFI 212
Query: 231 TDNGLASNPHAT--TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ + N ALIDMYAKCG + ++++F K+V WNA+I LA++G
Sbjct: 213 DKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARD 272
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
++ +M + K +DITF+G+L+ACSH GLV EG F M GV +++HYGCMV
Sbjct: 273 SVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMV 332
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS-NYLS 407
D+LGRA LL+ A ELI +MP P + GALL AC +H+ ++ +RV + + + N
Sbjct: 333 DMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQ 392
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
G ++ +++YA+ G+W + R ++ +GI K
Sbjct: 393 SGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 426
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 121/262 (46%), Gaps = 13/262 (4%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A+L+ Y +D A ++F+ MPEKD+++W M+ +A G+ ++L M +
Sbjct: 123 NAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNV 182
Query: 109 SFN-----IMISGYARIGKIHSARYIFDKVPAKDVVSWN------SLILAYTNAGEMEKA 157
N ++S A + + R++ + +V N +LI Y G + A
Sbjct: 183 QPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIA 242
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
++F + KNV WN ++T + + VD F++MK KP+ +T VL+AC++
Sbjct: 243 VKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHG 302
Query: 218 GSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNA 275
G ++ G R A+ G+ ++DM + G +E++ E+ DV + A
Sbjct: 303 GLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGA 362
Query: 276 MILGLALHGYGYAALKLLGEMN 297
++ +H A ++ E++
Sbjct: 363 LLGACRMHKRFDVAERVQSEIH 384
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 159/504 (31%), Positives = 266/504 (52%), Gaps = 46/504 (9%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
Q + + D Y+FP ++ A L + +H + + GF +Y+ AL+ MY +
Sbjct: 107 QRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDL 166
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------------DLMPLK 105
D A KVFE+MP +D+++WNS++ + + G + A+++ DL+ +
Sbjct: 167 DKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTIT 226
Query: 106 -----------------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAK 136
D T+ NI+I+ YA+ G + +++ +F + K
Sbjct: 227 SILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK 286
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
D VSWNS+I Y G+M + ++F+ M +++ITWNT++ + S+ + + M+
Sbjct: 287 DSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR 346
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
V PD T+ S+L C+ L + G IH GL S+ LI+MY+KCGS+
Sbjct: 347 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLR 406
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
S +VF + KDV W A+I ++G G A++ GEM + + D + F+ ++ ACS
Sbjct: 407 NSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 466
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
H+GLV+EG F RM+KD+ + ++EHY C+VDLL R+ LLD+A + I +MP +P SI
Sbjct: 467 HSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIW 526
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
GALLSAC + D EI +RV++ + + N G ++ +N+YA+ G+W++ R +
Sbjct: 527 GALLSACRMSGDTEIAERVSERI-IELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKA 585
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAG 460
G+ K G S +E+ + F G
Sbjct: 586 RGLKKDPGCSWMEIQNKVYVFGTG 609
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 13/182 (7%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
NV WN+++ + L+ E + L+ E + ++PD T SV++ACA L E IH
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG- 286
D G S+ + ALIDMY + ++++ +VF + ++DV WN++I G +GY
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198
Query: 287 ------YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
Y ++KL EM + K D +T +L AC H G ++ F + D+ +T
Sbjct: 199 EALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLE-----FGKYVHDYMITSG 252
Query: 341 LE 342
E
Sbjct: 253 YE 254
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 42/265 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D + +L +L++ G +HG K G V V L++MY
Sbjct: 345 MRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGS 404
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ ++F+VF+ M KD++ W +++ A G+ A++ M +
Sbjct: 405 LRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI------------- 451
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
VP D V++ ++I A +++G +E+ F +M + + + +
Sbjct: 452 ------------VP--DHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACV 497
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V RS L + D M +KPD ++LSAC G E R+ ++ +
Sbjct: 498 VDLLSRSALLDKAEDFILSMP---LKPDSSIWGALLSACRMSGDTEIAERV----SERII 550
Query: 236 ASNPHATTALI---DMYAKCGSIEQ 257
NP T + ++YA G +Q
Sbjct: 551 ELNPDDTGYYVLVSNIYAALGKWDQ 575
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 92/258 (35%), Gaps = 44/258 (17%)
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY-KSQ 266
+S+ A A+ + ++H GL + + LI YA S VF S
Sbjct: 17 SSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASP 76
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ-EGC 325
+V+ WN++I L +G AL L E ++ D TF +++AC AGL+ E
Sbjct: 77 SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINAC--AGLLDFEMA 134
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP----------------- 368
+ D G L ++D+ R LD+A ++ E MP
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194
Query: 369 -----------------------FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
F+P + ++L AC DLE G V +
Sbjct: 195 GYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE 254
Query: 406 LSDGELMMFANLYASCGQ 423
+ N+YA CG
Sbjct: 255 CDTTASNILINMYAKCGN 272
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 169/472 (35%), Positives = 251/472 (53%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV + ++ +LL A ++ G +H + K GF + VQ AL+ MY
Sbjct: 319 MQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGS 378
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
I DA VF+KM KD+I+W +M+ A G A+ + M V ++ +++
Sbjct: 379 IKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNA 438
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ + R I +V A D N+L+ Y+ G ++ A ++F +M+ ++++ +
Sbjct: 439 CSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAY 498
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY L E + LFD ++ +KPD +T ++L+ACAN GSLE IH
Sbjct: 499 NAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRK 558
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S+ AL+ YAKCGS + VF K ++V WNA+I G A HG G AL+L
Sbjct: 559 GGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQL 618
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M VK D +TF+ LLSACSHAGL++EG F M +DF + +EHYGCMVDLLG
Sbjct: 619 FERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLG 678
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LD A LI+ MPF+ I GALL AC IH ++ + +R A+ K + + +
Sbjct: 679 RAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAES-SLKLDLDNAVVYV 737
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+++YA+ G W+ A + R +M G+ K G S I+V H F+A H
Sbjct: 738 ALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSH 789
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 213/475 (44%), Gaps = 53/475 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G+ D + L + + G +H Q ++ G V V +L MY
Sbjct: 117 MQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGS 176
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
I++A +VF+KM +K +++W + +A CG+ + A ++ M + V I +++
Sbjct: 177 IEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNA 236
Query: 117 YARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++ + + + ++ D +L+ Y G + ++F+K++ +++I W
Sbjct: 237 FSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 296
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTM+ G + E +++++M+ V P+ +T +L+AC N +L G IH
Sbjct: 297 NTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK 356
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S+ ALI MY++CGSI+ + VF K KDV W AMI GLA G+G AL +
Sbjct: 357 AGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTV 416
Query: 293 LGEMNDSCVKADDITFIGLLSACS----------------HAGL---------------- 320
EM + V+ + +T+ +L+ACS AGL
Sbjct: 417 YQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSM 476
Query: 321 ---VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTES 374
V++ ++F RM + R + Y M+ L A++L + + E P +
Sbjct: 477 CGSVKDARQVFDRM-----IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV 531
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEAN 428
+L+AC LE + +V K + SD + + YA CG + +A+
Sbjct: 532 TYINMLNACANSGSLEWAREIHTLV-RKGGFFSDTSVGNALVSTYAKCGSFSDAS 585
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 126/484 (26%), Positives = 220/484 (45%), Gaps = 45/484 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q+ G ++ + +LK + G +H I+ Y AL+ MY
Sbjct: 14 LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGS 73
Query: 61 IDDAFKVFEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMI 114
I++A +V++K+ E+ + +WN+M+ + G ++ A+KL+ M D T+ +
Sbjct: 74 IEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFL 133
Query: 115 SGYARIGKIHSARYI-FDKVPAK---DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
S G + R I F + A DV N ++ Y G +E+A E+F KM K+V+
Sbjct: 134 SSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVV 193
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W + GY ++F +M+ V P+ +T SVL+A ++ +L+ G +H
Sbjct: 194 SWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRI 253
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ G S+ TAL+ MYAKCGS + +VF K +D+ WN MI GLA GY A
Sbjct: 254 LNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEAS 313
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK-----DFGVT------- 338
++ +M V + IT++ LL+AC ++ + G E+ SR+ K D GV
Sbjct: 314 EVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMY 373
Query: 339 ------------------RKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILG 377
+ + + M+ L ++ A+ + + M EP
Sbjct: 374 SRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYT 433
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMND 436
++L+AC LE G R+ + V ++ +D + N+Y+ CG ++A + + M
Sbjct: 434 SILNACSSPAALEWGRRIHQQV-VEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQ 492
Query: 437 TGIV 440
IV
Sbjct: 493 RDIV 496
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 148/332 (44%), Gaps = 49/332 (14%)
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM--LVKNVITWNTMVTGYLRSQL 184
++I D + N+LI Y G +E+A +++KK+ + + V +WN MV GY++
Sbjct: 47 QHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGY 106
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
+ + L +M+ + PD T+ S LS+C + G+LE G IH A GL +
Sbjct: 107 IEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANC 166
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
+++MYAKCGSIE++ EVF K + K V W I G A G A ++ +M V +
Sbjct: 167 ILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPN 226
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRM-----EKDFGVTRKLEHYGCMVDLLGRARLLDR 359
IT+I +L+A S ++ G + SR+ E D V L V + +
Sbjct: 227 RITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTAL------VKMYAKCG---- 276
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
++ + L++ +I + IG L++G
Sbjct: 277 --------SYKDCRQVFEKLVNRDLIAWNTMIGG------------LAEG---------- 306
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
G WEEA+ N M G++ + VI +N
Sbjct: 307 --GYWEEASEVYNQMQREGVMPNKITYVILLN 336
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 8/185 (4%)
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
++VV + A DY+ +L C + L G ++H + + + + AL
Sbjct: 8 VDVVQYLQQQGAQVNSSDYM---KMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64
Query: 246 IDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
I+MY +CGSIE++ +V+ K + V WNAM++G +GY ALKLL +M +
Sbjct: 65 INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124
Query: 304 DDITFIGLLSACSHAGLVQEGCEL-FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
D T + LS+C G ++ G E+ F M+ G+ ++ C++++ + ++ A E
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQA--GLLFDVKVANCILNMYAKCGSIEEARE 182
Query: 363 LIEAM 367
+ + M
Sbjct: 183 VFDKM 187
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 170/472 (36%), Positives = 254/472 (53%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + ++ +LL A ++ G +H + +K GF + VQ AL+ MY
Sbjct: 437 MQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGS 496
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---LK-DVTSFNIMISG 116
I DA +F KM KDII+W +M+ A G A+ + M LK + ++ +++
Sbjct: 497 IKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNA 556
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ + R I +V A D N+L+ Y+ G ++ A ++F +M ++++ +
Sbjct: 557 CSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAY 616
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY L E + LFD ++ +KPD +T ++L+ACAN GSLE IH
Sbjct: 617 NAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLK 676
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+G S+ AL+ YAKCGS +L VF K ++V WNA+I G A HG G L+L
Sbjct: 677 DGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQL 736
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M +K D +TF+ LLSACSHAGL++EG F M +DFG+T +EHYGCMVDLLG
Sbjct: 737 FERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLG 796
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LD LI+ MPF+ I GALL AC IH ++ + +R A+ K + + +
Sbjct: 797 RAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAES-SLKLDPDNAAVYV 855
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+++YA+ G W+ A + R +M G+ K G S IEV H F+A H
Sbjct: 856 ALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSH 907
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 127/476 (26%), Positives = 215/476 (45%), Gaps = 57/476 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G+ + LL + S+ G +H + +K V V +L MY
Sbjct: 235 MQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGS 294
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-----TSFNIM-- 113
I +A +VF+KM K +++W ++ +A CG + A ++ M + V T N++
Sbjct: 295 IHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNA 354
Query: 114 ISGYA--RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
SG A + GK +HS +I + D+ +L+ Y G + ++F+K++ +++I
Sbjct: 355 FSGPAALKWGKTVHS--HILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI 412
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WNTM+ G + E +++ +M+ + P+ +T +L+AC N +L G IH
Sbjct: 413 AWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRV 472
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G + ALI MYA+CGSI+ + +F K KD+ W AMI GLA G G AL
Sbjct: 473 VKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEAL 532
Query: 291 KLLGEMNDSCVKADDITFIGLLSACS----------------HAGL-------------- 320
+ +M + +K + +T+ +L+ACS AGL
Sbjct: 533 AVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMY 592
Query: 321 -----VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PT 372
V++ ++F RM + R + Y M+ L A++L + + E P
Sbjct: 593 SMCGSVKDARQVFDRMTQ-----RDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPD 647
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEA 427
+ +L+AC LE + +V K YLSD L + YA CG + +A
Sbjct: 648 KVTYINMLNACANSGSLEWAKEIHSLVL-KDGYLSDTSLGNALVSTYAKCGSFSDA 702
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 124/515 (24%), Positives = 215/515 (41%), Gaps = 107/515 (20%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q+ G ++ + +LK + G +H I+ Y AL+ MY
Sbjct: 132 LQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGS 191
Query: 61 IDDAFKVFEKM--PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--------------- 103
I++A +V+ K+ E+ + +WN+M+ + G ++ A+KL+ M
Sbjct: 192 IEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLL 251
Query: 104 ------------------------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
L DV N +++ YA+ G IH AR +FDK+ K VV
Sbjct: 252 SSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVV 311
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
SW +I Y + G E A E+F+KM + V+
Sbjct: 312 SWTIIIGGYADCGHSEIAFEIFQKMQQEGVV----------------------------- 342
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T +VL+A + +L+ G +H + + G S+ TAL+ MYAKCGS +
Sbjct: 343 --PNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCR 400
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF K +D+ WN MI GLA G A ++ +M + + IT++ LL+AC +
Sbjct: 401 QVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPT 460
Query: 320 LVQEGCELFSRMEKD----------------------------FG--VTRKLEHYGCMVD 349
+ G E+ SR+ KD F V + + + M+
Sbjct: 461 ALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIG 520
Query: 350 LLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
L ++ L A+ + + M +P ++L+AC L+ G R+ + V ++
Sbjct: 521 GLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI-EAGLA 579
Query: 407 SDGELM-MFANLYASCGQWEEANRWRNMMNDTGIV 440
+D + N+Y+ CG ++A + + M IV
Sbjct: 580 TDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIV 614
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 19/199 (9%)
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+TG R+ ++VV + A DY+ +L C + L G +H + +
Sbjct: 119 ITGKDRA---MDVVQYLQQQGARVNSCDYM---KMLKRCIEVKDLVAGREVHEHIIQHCT 172
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYK--SQVKDVFCWNAMILGLALHGYGYAALKLL 293
+ + ALI+MY +CGSIE++ +V+ K + V WNAM++G +GY ALKLL
Sbjct: 173 VLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLL 232
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF-----SRMEKDFGVTRKLEHYGCMV 348
EM + T + LLS+C ++ G E+ +R+ D V C++
Sbjct: 233 REMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVA------NCIL 286
Query: 349 DLLGRARLLDRAIELIEAM 367
++ + + A E+ + M
Sbjct: 287 NMYAKCGSIHEAREVFDKM 305
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/428 (34%), Positives = 246/428 (57%), Gaps = 34/428 (7%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
DA ++F+ +P D +++N++L +CG +D A ++ MP++DVTS+N M+SG ++ G
Sbjct: 59 DARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGA 118
Query: 123 IHSARYIFDKVPAKDVVSWNSLILA--------------------------------YTN 150
I A +F +PA++ VSWN+++ A Y +
Sbjct: 119 IEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMD 178
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTS 209
G ++KA E F+ M V+N+++WN +V GY+++ + + +F M + V+P+ T++S
Sbjct: 179 TGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSS 238
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
VL C+NL +L G ++H + L + T+L+ MY KCG ++ + ++F + KD
Sbjct: 239 VLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKD 298
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WNAMI G A HG G A+KL +M D V D IT + +L+AC H GL G + F
Sbjct: 299 IVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFE 358
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M++ + + +++HY CMVDLL RA LL+RA+ +I +MPFEP S G LL+AC ++++L
Sbjct: 359 TMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNL 418
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E + A+ + + + + G + AN+YA +W++ +R R M D +VKT G S +E
Sbjct: 419 EFAEFAARKLI-EQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWME 477
Query: 450 VNGSYHKF 457
+ G H+F
Sbjct: 478 IKGVRHEF 485
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 115/227 (50%), Gaps = 14/227 (6%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMP 103
TA++ Y + A + F MP +++++WN+++ + + A+++ D +
Sbjct: 170 TAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIV 229
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFD---KVP-AKDVVSWNSLILAYTNAGEMEKAGE 159
+ ++ + ++ G + + + R + K+P + + SL+ Y G+++ A +
Sbjct: 230 QPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACK 289
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F +M K+++ WN M++GY + + + LF++MK V PD++T+ +VL+AC + G
Sbjct: 290 LFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGL 349
Query: 220 LETGARIHVYAT-DNGLASNPHAT--TALIDMYAKCGSIEQSLEVFY 263
+ G I + T P + ++D+ + G +E+++ + +
Sbjct: 350 CDFG--IQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIH 394
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 23 LSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSM 82
LS+ G +H +K + V T+LL MY +DDA K+F++M KDI+AWN+M
Sbjct: 246 LSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAM 305
Query: 83 LDAFASCGQMDHAMKLIDLM 102
+ +A G A+KL + M
Sbjct: 306 ISGYAQHGGGRKAIKLFEKM 325
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 27/297 (9%)
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD---LFDEMKAGNVKPDYLTVTS 209
++ A E F +K T+N ++ GY ++ + D LFD + PD ++ +
Sbjct: 22 DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIP----HPDAVSYNT 77
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+LS G ++ R+ + S ++ +K G+IE++ +F ++
Sbjct: 78 LLSCHFACGDIDGAWRVFSTMPVRDVTS----WNTMVSGLSKNGAIEEAEAMFRAMPARN 133
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
WNAM+ A G AA L ++ K D I + ++S G VQ+ E F
Sbjct: 134 AVSWNAMVAARASSGDMGAAENLF---RNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFR 190
Query: 330 RMEKDFGVTRKLEHYGCMV-DLLGRARLLD--RAIE-LIEAMPFEPTESILGALLSACVI 385
M R L + +V + +R D R + ++E +P S L ++L C
Sbjct: 191 AMP-----VRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSN 245
Query: 386 HQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
L G +V + M ++ G ++ ++Y CG ++A + + M+ IV
Sbjct: 246 LSALGFGRQVHQWCMKLPLGRSITVGTSLL--SMYCKCGDLDDACKLFDEMHTKDIV 300
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 267/499 (53%), Gaps = 42/499 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+ +FP L+KA L G + G K GF V+V A + + + A ++
Sbjct: 119 PDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRL 178
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI---------------------------- 99
F++ P +D+++WN+++ + G A++L
Sbjct: 179 FDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMG 238
Query: 100 DLMPLKDVTSF-------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
DL K + F N ++ Y + G + A +F+++ + VSW ++I+
Sbjct: 239 DLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIV 298
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
+ G ME A +F +M ++V WN ++ GY++++ E + LF EM+ V P+ +T
Sbjct: 299 GHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEIT 358
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ ++LSAC+ LG+LE G +H Y + L + T+L+DMYAKCG+I++++ VF +
Sbjct: 359 MVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIP 418
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
V++ W +MI GLA HG+ A++ M D ++ D+ITFIG+LSAC HAGLV+ G +
Sbjct: 419 VQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQ 478
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
FS M + + RK++HY CM+DLLGRA LD A +L+ AMP +P + GAL AC +H
Sbjct: 479 FFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMH 538
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
++ +G++ A M + + G ++ AN+YA ++A++ R MM G+ K G S
Sbjct: 539 GNITLGEKAA-MKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCS 597
Query: 447 VIEVNGSYHKFLAGGIGHL 465
IE+NG H+F+ HL
Sbjct: 598 CIELNGVVHEFIVKDKSHL 616
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
+ +G+ +PD+LT ++ ACA L GA + + G +++ A + ++ G
Sbjct: 112 LHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGP 171
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND--SCVKADDITFIGLL 312
+ + +F +S V+DV WN +I G G AL+L + + + V+ D++T IG +
Sbjct: 172 MAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAV 231
Query: 313 SACSHAGLVQEGCEL 327
S C+ G ++ G L
Sbjct: 232 SGCAQMGDLELGKRL 246
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 160/503 (31%), Positives = 261/503 (51%), Gaps = 40/503 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ + ++ P ++KA I + L +HG ++ G G V+V ALL Y S
Sbjct: 103 MLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGS 162
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ----------------MDHAMKLIDLM-- 102
+ D+ + F++M ++++++WNSM+ +A G ++ L+ L+
Sbjct: 163 LGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIA 222
Query: 103 -------PLKDVTSFNIMISG--------------YARIGKIHSARYIFDKVPAKDVVSW 141
+ + +++SG Y + G + AR F+ +P K VVSW
Sbjct: 223 CSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSW 282
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ A T G + A F M +N+++WN M++ Y++ E +DL+++M++ +
Sbjct: 283 TSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLA 342
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +T+ +VLSA +G L G +H+Y DN + +L+DMYAKCG ++ ++ +
Sbjct: 343 PDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISL 402
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + ++V WN +I GLA+HG + M D ITF+ LLSACSH GL+
Sbjct: 403 FSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLL 462
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+ G F M + V ++EHY CMVDLLGR L++A+ LI+ MP +P + GALL
Sbjct: 463 ETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLG 522
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH +++IG +V K + +S G ++ +NL QWE+ R R +M + G K
Sbjct: 523 ACRIHGNVKIGRQVIKQLLELEG-ISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRK 581
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
G S IE+N S H+F I H
Sbjct: 582 DMGVSSIEINNSIHEFGVEDIRH 604
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 158/373 (42%), Gaps = 47/373 (12%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A ++F+ +P D + +N+++ A+ + A++L M + + + + I
Sbjct: 65 ARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTI 124
Query: 124 HSARYIFDKVPA--------KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
AR V V N+L+ +Y +AG + + F +M+ +NV++WN+M
Sbjct: 125 AQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 184
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ GY ++ EV LF EM+ D T+ S+L AC+ G+LE G +H +G
Sbjct: 185 IGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGS 244
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ +AL+DMY KCG + + F +K V W +M+ HG AA
Sbjct: 245 RVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDH 304
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + + +++ ++S G E +L+++M
Sbjct: 305 MPERNI----VSWNAMISCYVQRGQCHEALDLYNQM------------------------ 336
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MF 414
++ P E L A+LSA DL +G ++ + + Y D L+
Sbjct: 337 ---------QSQGLAPDEITLVAVLSASGRIGDLTVG-KMVHLYIRDNIYNPDVSLVNSL 386
Query: 415 ANLYASCGQWEEA 427
++YA CGQ + A
Sbjct: 387 LDMYAKCGQVDTA 399
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 2/257 (0%)
Query: 119 RIGKIHSARYIFDKVPA-KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
R+ ++H+ + + A D++ + LA G + A +F + + + +NT++
Sbjct: 26 RLNQLHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCHARRLFDGIPGPDRVMYNTIIR 85
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
Y S E + L M + P+ T+ V+ AC + E +H A GL
Sbjct: 86 AYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVG 145
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
AL+ YA GS+ S F + ++V WN+MI G A G L GEM
Sbjct: 146 QVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMR 205
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
D+ T + LL ACS G ++ G + RM G L +VD+ G+ L
Sbjct: 206 RQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVS-GSRVDLILESALVDMYGKCGDL 264
Query: 358 DRAIELIEAMPFEPTES 374
A E MP + S
Sbjct: 265 WMARRCFEMMPIKSVVS 281
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 238/404 (58%), Gaps = 1/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A ++FE+MP +++I++ +M+D +A G+++ A L + MP K+V S+ +MISGY
Sbjct: 156 VEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVEN 215
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GK A +F+++P K++V+ ++I Y G+ +KA +F ++ +++ +WN M+TGY
Sbjct: 216 GKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYA 275
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ E + L +M ++PD+ T+ SVL+AC++L SL+ G + HV +G S
Sbjct: 276 QNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRIS 335
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
ALI MY KCGSI S F + DV WNAMI A HG+ AL GEM +
Sbjct: 336 ICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNR 395
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V+ D ITF+ LLSAC HAG V E F+ M + + + EH+ C+VD+L R +++A
Sbjct: 396 VEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKA 455
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
++I+ MPFE I GALL+AC +H ++++G+ AK + S G ++ +N+YA+
Sbjct: 456 YKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNS-GAYVVLSNIYAA 514
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G W E R R +M + G+ K S +E++ H FL H
Sbjct: 515 AGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASH 558
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 156/356 (43%), Gaps = 23/356 (6%)
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
+P I L F S + H + I L +DV +FN+ I AR G I +AR +F
Sbjct: 12 LPRSPSIIRTIFLPIFHSFNRQFHPLS-IKLFSTQDVYAFNVQIGNLARAGNIGAARQVF 70
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
D++P +D VSWNS+I Y G +++ +F M KNV++WN+M+ G + + E
Sbjct: 71 DEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQ 130
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
F M N + +++S +E +R+ + S TA++D YA
Sbjct: 131 YFQAMPQRNT----ASWNAMISGLVRYDRVEEASRLFEEMPRRNVIS----YTAMVDGYA 182
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
K G IEQ+ +F K+V W MI G +G A L +M D + +
Sbjct: 183 KIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI----VAMTA 238
Query: 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL---IEAM 367
+++ G + LF ++ R L + M+ + + A++L + M
Sbjct: 239 MITGYCKEGKTDKAKILFDQI-----PCRDLASWNAMITGYAQNGSGEEALKLHSQMLKM 293
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCG 422
+P S L ++L+AC L+ G R ++ KS Y S + +Y CG
Sbjct: 294 GMQPDHSTLISVLTACSSLASLQEG-RKTHVLVLKSGYESRISICNALITMYCKCG 348
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 37/187 (19%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M ++G+ D+ + +L A L+S G H +K+G+ + + AL+ MY
Sbjct: 290 MLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGS 349
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA------MKLIDLMPLKDVTSFNIMI 114
I D+ F ++ D+++WN+M+ AFA G D A M+ + P D +F ++
Sbjct: 350 ILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEP--DGITFLSLL 407
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSW-NSLILAY----------------TNAGEMEKA 157
S GK+H + ++W NS+I +Y + G++EKA
Sbjct: 408 SACGHAGKVHES------------LNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKA 455
Query: 158 GEMFKKM 164
++ ++M
Sbjct: 456 YKIIQEM 462
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/472 (34%), Positives = 255/472 (54%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G D+ + +L AA + +G +HG I+ GF V + TAL MY
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNIM--ISG 116
++ A +F+ M +K +++WNSM+D + G+ + A+ + + M + D T IM +
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHA 358
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + +++ V D+ NSLI Y+ ++ A ++F + + ++W
Sbjct: 359 CADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSW 418
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY ++ E ++ F EMK+ +KPD T+ SV+ A A L IH
Sbjct: 419 NAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIR 478
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ L N TTAL+DMY+KCG+I + ++F + V WNAMI G HG G AAL L
Sbjct: 479 SCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDL 538
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M V+ +DIT++ ++SACSH+GLV EG F M++D+G+ ++HYG MVDLLG
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLG 598
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA + A + IE MP P ++ GA AC IH+++E+G++ AK + + N G +
Sbjct: 599 RAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLF-ELNPDEGGYHV 657
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YAS +W + R M G+ KT G SV+E+ H F +G H
Sbjct: 658 LLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTH 709
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 103/445 (23%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y+F LLK G + G +HGQ I F +V+ T ++ MY R IDDA+K+F++
Sbjct: 148 YNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDR 207
Query: 71 MPEKDIIAWNSMLDAFASC----------------GQMDHAMKLIDLMPL---------- 104
MPE+D+++WN+++ F+ GQ ++ L+ ++P
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG 267
Query: 105 KDVTSFNI-------------MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
K + + I + Y++ G + +AR IFD + K VVSWNS++ Y
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN 327
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
GE EKA +F+KML + + P +T+ L
Sbjct: 328 GEPEKAIAVFEKMLEE-------------------------------GIDPTGVTIMEAL 356
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
ACA+LG LE G +H + L S+ +LI MY+KC ++ + ++F +
Sbjct: 357 HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHV 416
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL------LSACSHA----GLV 321
WNAMILG A +G AL EM +K D T + + LS HA GL+
Sbjct: 417 SWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLI 476
Query: 322 QEGC------------ELFS--------RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
C +++S R D R + + M+D G L A+
Sbjct: 477 IRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAAL 536
Query: 362 ELIEAMP---FEPTESILGALLSAC 383
+L + M EP + +++SAC
Sbjct: 537 DLFDKMKKGAVEPNDITYLSVISAC 561
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 149/298 (50%), Gaps = 12/298 (4%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM 96
IK G QT L+ ++ I++A +VFE + +K +++ML +A ++ A+
Sbjct: 73 IKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETAL 132
Query: 97 KLIDLMPLKDVT----SFNIMI------SGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
+ M DV +F ++ + R +IH + A +V + ++
Sbjct: 133 AFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQ--LITNSFAANVFAMTGVVN 190
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y +++ A +MF +M +++++WNT++ G+ ++ + ++L M+ +PD +T
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSIT 250
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ +VL A A++G L G IH YA G A + +TAL DMY+KCGS+E + +F
Sbjct: 251 LVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD 310
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
K V WN+M+ G +G A+ + +M + + +T + L AC+ G ++ G
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NGL + T L+ +++K GSI ++ VF K ++ M+ G A + AL
Sbjct: 75 NGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAF 134
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
L M VK F LL C ++ G E+ ++ + G +V++
Sbjct: 135 LCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTG-VVNMYA 193
Query: 353 RARLLDRAIELIEAMP 368
+ R +D A ++ + MP
Sbjct: 194 KCRQIDDAYKMFDRMP 209
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/504 (31%), Positives = 270/504 (53%), Gaps = 46/504 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDD 63
+ D ++FP LLK + G +L + GF +++VQ + ++ ++
Sbjct: 130 NIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNY 189
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM--------------------- 102
A K+F+ +++ WN +L + + + + +L M
Sbjct: 190 ARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSAC 249
Query: 103 -PLKDVTS--------------------FNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
LKD+ N +I +A G++ +AR +FD++ +DV+SW
Sbjct: 250 SKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISW 309
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ + N ++ A + F +M ++ ++W M+ GYLR + EV+ LF +M+ NVK
Sbjct: 310 TSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVK 369
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ S+L+ACA+LG+LE G Y N + ++ ALIDMY KCG++E++ ++
Sbjct: 370 PDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKI 429
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + Q KD F W AMI+GLA +G+G AL + M ++ V D+IT+IG++ AC+H GLV
Sbjct: 430 FNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLV 489
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+G FS M G+ L HYGCMVDLLGRA L A+E+I MP +P + G+LL
Sbjct: 490 AKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLG 549
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDTGIV 440
AC +H+++++ + A + +G + ++ N+YA+C +W+ + R MM + GI
Sbjct: 550 ACRVHKNVQLAEMAANEILELEP--ENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIK 607
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S++E+NG ++F+AG H
Sbjct: 608 KIPGCSLMEMNGIVYEFVAGDKSH 631
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 51/341 (14%)
Query: 32 LHGQTIKTGFC-GHVYVQTALL----KMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF 86
+H QTIKTG H+++ ++ K G + A KVF+++P+ + WN+M+ +
Sbjct: 54 IHSQTIKTGLSSNHLFLTKVIIFCCTKESGD---VYYARKVFDEIPQPSVFIWNTMIKGY 110
Query: 87 ASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYA-----RIGKIHSARYIFDKVPAKD 137
+ + + L LM + ++ +F ++ G+ + GK+ + +
Sbjct: 111 SRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSN 170
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-- 195
+ I ++ G + A ++F V+TWN +++GY R + Y E LF EM
Sbjct: 171 LFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEK 230
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIH-VYATDNGLASNPHATTALIDMYAKCGS 254
K V P+ +T+ +LSAC+ L L G I+ Y + + N ALIDM+A CG
Sbjct: 231 KCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGE 290
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLA--------------------------LHGY--- 285
++ + VF + + +DV W +++ G A + GY
Sbjct: 291 MDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRM 350
Query: 286 --GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
L L +M S VK D+ T + +L+AC+H G ++ G
Sbjct: 351 NRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG 391
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 115/269 (42%), Gaps = 6/269 (2%)
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
+G++ A ++F ++ +V WNTM+ GY R V L+ M N+KPD T +
Sbjct: 82 SGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFL 141
Query: 211 LSACANLGSLETGARIHVYATDNG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
L +L+ G + +A +G L SN I +++ CG + + ++F +
Sbjct: 142 LKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWE 201
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMND--SCVKADDITFIGLLSACSHAGLVQEGCEL 327
V WN ++ G + +L EM CV + +T + +LSACS + G +
Sbjct: 202 VVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCI 261
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT---ESILGALLSACV 384
+++ K+ V L ++D+ +D A + + M SI+ + C
Sbjct: 262 YNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCR 321
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
I + D++ + + DG L M
Sbjct: 322 IDLARKYFDQMPERDYVSWTAMIDGYLRM 350
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 123/308 (39%), Gaps = 46/308 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D ++ +L A L + +G K ++ AL+ MY
Sbjct: 363 MQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGN 422
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
++ A K+F +M +KD W +M+ A+ G + A+ + M VT I G
Sbjct: 423 VEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCA 482
Query: 118 -ARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+G + ++ F + + ++ + ++ AG +++A E+ M VK N I
Sbjct: 483 CTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSI 542
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNV---KPD----YLTVTSVLSACANLGSLETG 223
W +++ G R +++ EM A + +P+ Y+ + ++ +AC +L
Sbjct: 543 VWGSLL-GACRVHKNVQLA----EMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNV 597
Query: 224 ARIH-------------------VYATDNGLASNPHATTALIDMYAKCGSIEQSL-EVFY 263
++ VY G S+P + ++YAK +++Q L Y
Sbjct: 598 RKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSK----EIYAKLENMKQDLSNAGY 653
Query: 264 KSQVKDVF 271
+VF
Sbjct: 654 SPDTSEVF 661
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 166/499 (33%), Positives = 265/499 (53%), Gaps = 40/499 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + ++F LLKA G +H ++TGF +V ALL Y + +
Sbjct: 86 GLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKG 145
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSF---- 110
+VF++M + ++ W ++ A+ + A++L D++ + V S
Sbjct: 146 RQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLL 205
Query: 111 -------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
+ +IS Y G + A F + P K++V WN++I
Sbjct: 206 GDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMI 265
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
+E ++F+ M ++V++WN+M+ G+ R Y E + F EM+ V P+ L
Sbjct: 266 HQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNAL 325
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ S LSACA+ G+L+TGA IH Y N + + ++LIDMY+KCG I++++++F +S
Sbjct: 326 TLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEES 385
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+D+F W +++ GLA+HG G AL +M ++ V+ DD+T +G+LSAC+HAGL+ +G
Sbjct: 386 TRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGW 445
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F MEK FG+ K+EHYG MVDLLGR L A +LI MP E E I GA LSAC +
Sbjct: 446 WYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRV 505
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H ++E+G+ A+ + +M+ +N+YA +W+ + R + G+ K+ G
Sbjct: 506 HNNVELGEVAARRLLGLXPRDPWARVML-SNMYAEEAKWDRSMGLRKEIKKKGLKKSPGC 564
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IEVNGS H FL G H
Sbjct: 565 SSIEVNGSVHGFLVGDNSH 583
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 152/339 (44%), Gaps = 45/339 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E+G+ D + ++ A G+L + +H K+G +V + L+ YG
Sbjct: 183 MREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGS 242
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A++ F++ P K+I+ WN+M+ ++ +L MP +DV S+N MI G+ARI
Sbjct: 243 LDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARI 302
Query: 121 GKIHSARYIFDKVP----------------------AKDVVSW----------------- 141
G+ A F ++ A D +W
Sbjct: 303 GQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLD 362
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+SLI Y+ G+++KA ++F++ +++ TW ++V G + + F +MK V+
Sbjct: 363 SSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQ 422
Query: 202 PDYLTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD +T+ VLSACA+ G L+ G GL ++D+ + G ++++ +
Sbjct: 423 PDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYD 482
Query: 261 VFYKSQVK-DVFCWNAMILGLALHGY----GYAALKLLG 294
+ ++ + W A + +H AA +LLG
Sbjct: 483 LIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLG 521
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 131/330 (39%), Gaps = 17/330 (5%)
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
R ++ R+ F P + N L + N + ++ NV WNTM+
Sbjct: 7 RFPQLSHTRFSFRLHPLTNP---NKLPRIHGNTIATVEDPSAASRLDCANVFVWNTMIRK 63
Query: 179 YLRSQLYIEVVDLFDEMKA--GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+ + L L M+ ++P+ T +L A + ++ G +H G A
Sbjct: 64 QVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFA 123
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ + AL+ Y CG + + +VF + + + W +I + AL+L M
Sbjct: 124 CSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTM 183
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ + D + ++SAC G + + +EK G+ ++ G
Sbjct: 184 REVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKS-GIEVDAFVSSTLISTYGECGS 242
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
LD A + P + + ++ V H +LE+G ++ + + D +++ + +
Sbjct: 243 LDYAYRFFQETPMKNI-VVWNTMIHQSVEHNNLELGKQLFQ-------SMPDRDVVSWNS 294
Query: 417 L---YASCGQWEEANRWRNMMNDTGIVKTA 443
+ +A GQ++EA W + M +G+ A
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNA 324
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 231/396 (58%), Gaps = 3/396 (0%)
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
M EK+++ W SM++ + + A + DL P +D+ +N MISGY +G + AR +F
Sbjct: 1 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
D++P +DV+SWN+++ Y N G+ME +F M +NV +WN ++ GY ++ EV+
Sbjct: 61 DQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLG 120
Query: 191 LFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NPHATTALIDM 248
F M G+V P+ T+T VLSACA LG+ + G +H Y G + + ALIDM
Sbjct: 121 SFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDM 180
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
Y KCG+IE ++EVF + +D+ WN MI GLA HG+G AL L EM +S + D +TF
Sbjct: 181 YGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTF 240
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+G+L AC H GLV++G F+ M DF + ++EH GC+VDLL RA L +A+E I MP
Sbjct: 241 VGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMP 300
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
+ I LL A +++ ++IG+ VA K + +M +N+Y G++++A
Sbjct: 301 VKADAVIWATLLGASKVYKKVDIGE-VALEELIKLEPRNPANFVMLSNIYGDAGRFDDAA 359
Query: 429 RWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R + M DTG K AG S IE + KF + G H
Sbjct: 360 RLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKH 395
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 131/255 (51%), Gaps = 23/255 (9%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----K 97
C V +L+ Y ++ ++ +VF+ MPE+++ +WN ++ +A G++ + +
Sbjct: 65 CRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKR 124
Query: 98 LID---LMPLKDVTSFNIMISGYARIGKIHSARYI--------FDKVPAKDVVSWNSLIL 146
++D ++P + + +++S A++G +++ ++KV DV N+LI
Sbjct: 125 MVDEGSVVP--NDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKV---DVNVKNALID 179
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G +E A E+FK + +++I+WNTM+ G E ++LF EMK + PD +T
Sbjct: 180 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVT 239
Query: 207 VTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
VL AC ++G +E G A + TD + ++D+ ++ G + Q++E K
Sbjct: 240 FVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKM 299
Query: 266 QVK-DVFCWNAMILG 279
VK D W A +LG
Sbjct: 300 PVKADAVIW-ATLLG 313
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 20/250 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLR 59
+ E V ++ + L+L A L + G +H G+ V V+ AL+ MYG
Sbjct: 126 VDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCG 185
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY-- 117
I+ A +VF+ + +D+I+WN+M++ A+ G A+ L M ++ + G
Sbjct: 186 AIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLC 245
Query: 118 --ARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
+G + F+ + ++ ++ + AG + +A E KM VK +
Sbjct: 246 ACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADA 305
Query: 170 ITWNTMVTGYLRSQLYIEV----VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+ W T++ S++Y +V V L + +K P + S + A G + AR
Sbjct: 306 VIWATLLGA---SKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDA--GRFDDAAR 360
Query: 226 IHVYATDNGL 235
+ V D G
Sbjct: 361 LKVAMRDTGF 370
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 263/479 (54%), Gaps = 51/479 (10%)
Query: 35 QTIKTGFCGHVYVQTALLKMYGSLRCI--DDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
Q I TGF + + LLK I D + ++F+++ + WN+M+ A+
Sbjct: 51 QMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSA 110
Query: 93 DHAMKLIDLM------------PL---------------------------KDVTSFNIM 113
+ A+ L LM PL DV N +
Sbjct: 111 EKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTL 170
Query: 114 ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK---AGEMFKKMLVKNVI 170
I+ YA G + AR +FD+ P D VSWNS++ Y G+M + A ++F +M K+++
Sbjct: 171 INMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMV 230
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W+ +++GY ++ +Y E + +F EM A ++ D + V SVLSACA+L ++TG IH
Sbjct: 231 SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLV 290
Query: 231 TDNGLASNPHATTALI----DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
G+ S + ALI DMY KCG +E +LEVF + K V WNA+I+GLA++G
Sbjct: 291 IRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLV 350
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
+L + EM ++ V ++ITF+G+L AC H GLV EG F+ M + G+ ++HYGC
Sbjct: 351 ERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGC 410
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNY 405
MVDLLGRA LL+ A +LIE+MP P + GALL AC H D E+G+RV K++ + ++
Sbjct: 411 MVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDH 470
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
DG ++ +N++AS G WE+ R MM G+VKT G S+IE NG H+FLAG H
Sbjct: 471 --DGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTH 527
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 148/328 (45%), Gaps = 50/328 (15%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V DNY++PL+++A + G +H +K GF VYVQ L+ MY + DA
Sbjct: 125 VGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDAR 184
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAM---KLIDLMPLKDVTSFNIMISGYARIGK 122
K+F++ P D ++WNS+L + G M M KL + M KD+ S++ +ISGY + G
Sbjct: 185 KLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGM 244
Query: 123 IHSARYIF----------DKVPAKDVVS-----------------------------WNS 143
A +F D+V V+S N+
Sbjct: 245 YEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNA 304
Query: 144 LILAYTN----AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
LI Y++ G +E A E+F M K V +WN ++ G + L +D+F EMK
Sbjct: 305 LIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNG 364
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYA--TDNGLASNPHATTALIDMYAKCGSIEQ 257
V P+ +T VL AC ++G ++ G R H + +G+ N ++D+ + G + +
Sbjct: 365 VIPNEITFMGVLGACRHMGLVDEG-RCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNE 423
Query: 258 SLEVFYK-SQVKDVFCWNAMILGLALHG 284
+ ++ DV W A++ HG
Sbjct: 424 AEKLIESMPMAPDVATWGALLGACKKHG 451
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 250/460 (54%), Gaps = 42/460 (9%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-------- 96
+ +++ ++G + +A K+F++M EKD++ W++++ F + A+
Sbjct: 310 IIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHK 369
Query: 97 --------------------------KLIDLMPLKDVTSF-----NIMISGYARIGKIHS 125
KLI + LK T N +I Y++ G I
Sbjct: 370 IGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMV 429
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD+ D++SWNS+I Y ++ A +F M K+V++W++M++GY ++ L+
Sbjct: 430 ARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 489
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
E + LF EM+ KPD T+ SV+SACA L +LE G +H Y NGL N T L
Sbjct: 490 DETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTL 549
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
IDMY KCG +E +LEVFY K + WNA+ILGLA++G ++L + M V ++
Sbjct: 550 IDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNE 609
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
ITF+G+L AC H GLV EG F M D + ++HYGCMVDLLGRA L A EL+
Sbjct: 610 ITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 669
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQW 424
MP P + GALL AC H D E+G RV K++ + ++ DG ++ +N+YAS G+W
Sbjct: 670 RMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDH--DGFHVLLSNIYASKGKW 727
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ R MM ++K G S+IE NG H+FLAG H
Sbjct: 728 DDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTH 767
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 186/391 (47%), Gaps = 63/391 (16%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
ADNY++PLL++A I S +H +K GF VYV+
Sbjct: 211 ADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVR------------------- 251
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
N++++ F+ C M A ++ + + D S+N +++GY IG + A+
Sbjct: 252 ------------NTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAK 299
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+I+ ++P + +++ NS+I+ + G + +A ++F +ML K+++TW+ ++ + ++++Y E
Sbjct: 300 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 359
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ F M V D + S LSACANL + G IH + G S + ALI
Sbjct: 360 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY 419
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL--------------------------A 281
MY+KCG I + ++F ++ + D+ WN+MI G
Sbjct: 420 MYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSM 479
Query: 282 LHGYGY-----AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
+ GY L L EM S K D+ T + ++SAC+ +++G + + ++++ G
Sbjct: 480 ISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN-G 538
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+T + ++D+ + ++ A+E+ M
Sbjct: 539 LTINVILGTTLIDMYMKCGCVETALEVFYGM 569
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 43/326 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M ++GV D L A L +G ++H ++K G ++ +Q AL+ MY
Sbjct: 367 MHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGD 426
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
I A K+F++ D+I+WNSM+ + C +D+A + D MP KDV S++ MISGY
Sbjct: 427 IMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQN 486
Query: 118 --------------------------------ARIGKIHSARYIFDKVPAK----DVVSW 141
AR+ + +++ + +V+
Sbjct: 487 DLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILG 546
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+LI Y G +E A E+F M+ K + TWN ++ G + L +D+F MK +V
Sbjct: 547 TTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVT 606
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYAT--DNGLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T VL AC ++G ++ G H Y+ D+ + N ++D+ + G ++++
Sbjct: 607 PNEITFMGVLGACRHMGLVDEGQH-HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAE 665
Query: 260 EVFYK-SQVKDVFCWNAMILGLALHG 284
E+ + DV W A++ HG
Sbjct: 666 ELLNRMPMTPDVATWGALLGACKKHG 691
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
L+ M + + D T ++ AC+ S ++H + G S+ + LI+ ++
Sbjct: 200 LYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFS 259
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD--ITF 308
C ++ + VF +S V D WN+++ G G A + +M + + A + I
Sbjct: 260 VCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVL 319
Query: 309 IGLLSACSHAGLVQEGCELFSRM-EKD 334
G+ GLV E C+LF M EKD
Sbjct: 320 FGM------RGLVVEACKLFDEMLEKD 340
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/405 (37%), Positives = 237/405 (58%), Gaps = 2/405 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A F++MP KD +WN+M+ +A G+M+ A +L M K+ S+N MISGY
Sbjct: 140 FEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIEC 199
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV-KNVITWNTMVTGY 179
G + A + F P + VV+W ++I Y A ++E A MFK M V KN++TWN M++GY
Sbjct: 200 GDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGY 259
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ + + + LF M ++P+ ++S L C+ L +L+ G +IH + + L ++
Sbjct: 260 VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDV 319
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
A T+LI MY KCG + + ++F + KDV WNAMI G A HG AL L EM D+
Sbjct: 320 TALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDN 379
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
++ D ITF+ +L AC+HAGLV G F M +D+ V + +HY CMVDLLGRA L+
Sbjct: 380 KIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEE 439
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A++LI +MPF P ++ G LL AC +H+++E+ + A+ + ++ + G + + AN+YA
Sbjct: 440 ALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQL-ANIYA 498
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S +WE+ R R M ++ +VK G S IE+ H F + H
Sbjct: 499 SKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIH 543
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 51/338 (15%)
Query: 107 VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT-NAGEMEKAGEMFKKML 165
+ N +I+ R G I A +F + AK+ ++WNSL++ + + M +A ++F ++
Sbjct: 61 IFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP 120
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+ ++N M++ Y+R+ + + FD M D + ++++ A G +E AR
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK----DAASWNTMITGYARRGEMEK-AR 175
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
Y+ + N + A+I Y +CG +E++ F + V+ V W AMI GY
Sbjct: 176 ELFYSM---MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMIT-----GY 227
Query: 286 GYAALKLLGE--MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
A L E D V + +T+ ++S ++G +LF M
Sbjct: 228 MKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAM------------ 275
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
L+ I P S L + L C L++G ++ ++V +KS
Sbjct: 276 -------------LEEGI--------RPNSSGLSSALLGCSELSALQLGRQIHQIV-SKS 313
Query: 404 NYLSD-GELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+D L ++Y CG+ +A + +M +V
Sbjct: 314 TLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVV 351
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 9/176 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ ++ L LS+ +G +H K+ C V T+L+ MY
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGE 334
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMI-- 114
+ DA+K+FE M +KD++AWN+M+ +A G D A+ ++ID D +F ++
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLA 394
Query: 115 ---SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
+G IG + + D + ++ AG++E+A ++ + M +
Sbjct: 395 CNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 260/462 (56%), Gaps = 33/462 (7%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
+ L D++SF LLKAA S G+ LH Q I G H++V T L+ MY +
Sbjct: 98 RRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFV 157
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
A KVFE+M E +V ++N +++ R G
Sbjct: 158 AFAKKVFEEMFEP-------------------------------NVVAWNAVVTACFRCG 186
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
+ A +F+++P +++ SWN ++ YT AGE+E A ++F +M VK+ ++W+TM+ G+
Sbjct: 187 DVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAH 246
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ + E F E++ ++P+ +++T LSACA+ G++E G +H + +G
Sbjct: 247 NGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSV 306
Query: 242 TTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
AL+D Y+KCG++ + VF + + + + W +MI GLA+HGYG A++L EM +S
Sbjct: 307 NNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESG 366
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
++ D I FI +L ACSHAGL+++G E F +M+ + + +EHYGCMVDL GRA LD+A
Sbjct: 367 IRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKA 426
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
E I MP PT I LL AC IH ++++ +RV + + ++ + + G+ ++ +N+YA
Sbjct: 427 YEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERL-SELDPNNSGDHVLLSNIYAV 485
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
G+W++ R M D + KT G S+IEV+ + F+AG +
Sbjct: 486 AGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEV 527
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q++G+ + S L A + G +LHG K+GF V V ALL Y
Sbjct: 260 LQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGN 319
Query: 61 IDDAFKVFEKMPEK-DIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMIS 115
+ A VFE+MPEK I++W SM+ A G + A++L M D +F ++
Sbjct: 320 VGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILY 379
Query: 116 GYARIGKIHSARYIFDKVPAKDVVS-------WNSLILAYTNAGEMEKAGEMFKKMLV-K 167
+ G I F K+ KD+ + + ++ Y AG+++KA E M V
Sbjct: 380 ACSHAGLIEKGYEYFYKM--KDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLP 437
Query: 168 NVITWNTMV 176
I W T++
Sbjct: 438 TAIIWRTLL 446
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 108/259 (41%), Gaps = 18/259 (6%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP-DYLTVTSVLS 212
++ A +F +V NT++ G S + F EM+ P D + +L
Sbjct: 55 LDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLK 114
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
A A+ SLE+G ++H A +GL ++ T L+ MY++CG + + +VF + +V
Sbjct: 115 AAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVA 174
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WNA++ G A + M + + ++ +L+ + AG ++ +LF M
Sbjct: 175 WNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNV----MLAGYTKAGELELARKLFLEMP 230
Query: 333 KDFGVTRK-----LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
V+ H G + G R L + + P E L LSAC
Sbjct: 231 VKDDVSWSTMIVGFAHNGFFYEAFGFFREL-------QQVGMRPNEVSLTGALSACADAG 283
Query: 388 DLEIGDRVAKMVCAKSNYL 406
+E G ++ KS +L
Sbjct: 284 AIEFG-KILHGFIEKSGFL 301
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/470 (33%), Positives = 250/470 (53%), Gaps = 13/470 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+H + +++P +L+ +G +H +IK GF +YV L+ MY C
Sbjct: 337 MQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGC 396
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-- 118
+D A K+ E + ++D+++W SM+ + + A+ M V NI ++ A
Sbjct: 397 LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASA 456
Query: 119 -------RIG-KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
R G +IH+ Y+ A D+ WN+L+ Y G E+A +F+++ K+ I
Sbjct: 457 CAGIKAMRQGLQIHARVYVSGY--AADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEI 514
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TWN +++G+ +S+LY + + +F +M K + T S +SA ANL ++ G ++H A
Sbjct: 515 TWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRA 574
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G S ALI +Y KCGSIE + +F + +++ WN +I + HG G AL
Sbjct: 575 VKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEAL 634
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M +K +D+TFIG+L+ACSH GLV+EG F M +G+ +HY C+VD+
Sbjct: 635 DLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDI 694
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA LDRA ++ MP I LLSAC +H+++EIG+ AK + + S
Sbjct: 695 LGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDS-AS 753
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
++ +N YA G+W ++ R MM D GI K G S IEV + H F G
Sbjct: 754 YVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVG 803
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 109/446 (24%), Positives = 199/446 (44%), Gaps = 51/446 (11%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G M+H Q K FC +V AL+ +Y A +VF M D + +N+++ A
Sbjct: 163 GRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQ 222
Query: 89 CGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKDVVS 140
CG + A+++ D M L D + +++ A +G + + Y+ + D ++
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYIT 282
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
SL+ Y G++E A ++F NV+ WN M+ Y + + ++F +M+A +
Sbjct: 283 EGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI 342
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ T +L C G +E G +IH + NG S+ + + LIDMY+K G ++++ +
Sbjct: 343 HPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARK 402
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+ + +DV W +MI G H + AL EM D V D+I SAC+
Sbjct: 403 ILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKA 462
Query: 321 VQEGCELFSRM-------------------------EKDFGVTRKLEH-----YGCMVDL 350
+++G ++ +R+ E+ F + R++EH + ++
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISG 522
Query: 351 LGRARLLDRAIELIEAMPFEPTE-------SILGALLSACVIHQDLEIGDRVAKMVCAKS 403
G++RL +A+ + M + S + AL + I Q ++ R K+
Sbjct: 523 FGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRA-----VKT 577
Query: 404 NYLSDGELM-MFANLYASCGQWEEAN 428
+ S+ E+ +LY CG E+A
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAK 603
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/447 (23%), Positives = 198/447 (44%), Gaps = 57/447 (12%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +H ++ G + L+ +Y + A +VF+++ +D ++W +ML +A
Sbjct: 63 LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISG----------YARIGKIHSARYIFDKVPAKDVV 139
G A +L M V ++S +A+ IH+ ++ + +
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQ--VYKQAFCSETF 180
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
N+LI Y G + A +F ML + +T+NT+++G+ + + +FDEM+
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG 240
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
++PD +TV S+L+ACA++G L+ G ++H Y G++ + +L+D+Y KCG IE +
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
++F +V WN M++ + ++ G+M + + + T+ +L C+ G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTG 360
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE--------- 370
++ G ++ S K+ G + G ++D+ + LD+A +++E +
Sbjct: 361 QIELGEQIHSLSIKN-GFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMI 419
Query: 371 -------------------------PTESILGALLSAC----VIHQDLEIGDRVAKMVCA 401
P L + SAC + Q L+I RV
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV-----Y 474
Query: 402 KSNYLSDGELM-MFANLYASCGQWEEA 427
S Y +D + NLYA CG+ EEA
Sbjct: 475 VSGYAADISIWNTLVNLYARCGRSEEA 501
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 44/273 (16%)
Query: 207 VTSVLSACANLGS-LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+T L AC G+ IH + GL ++ LID+YAK G + Q+ +VF +
Sbjct: 45 LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+D W AM+ G A G G A +L +M+ + V +LSAC+ L +G
Sbjct: 105 SSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164
Query: 326 ELFSRMEKD------------------FGVTRKLEHYGCMVDLLGRARLL---------- 357
+ +++ K FG + E C D+L R+
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC--DMLFCDRVTFNTLISGHAQ 222
Query: 358 ----DRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS---NYLS 407
+ A+++ + M P + +LL+AC DL+ G ++ + +Y++
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYIT 282
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+G L+ +LY CG E A+ N+ + T +V
Sbjct: 283 EGSLL---DLYVKCGDIETAHDIFNLGDRTNVV 312
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 239/404 (59%), Gaps = 1/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A ++FE+MP +++I++ +M+D +A G+++ A L + MP K+V S+ +MISGY
Sbjct: 84 VEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVEN 143
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GK A +F+++P K++V+ ++I Y G+ +KA +F ++ +++ +WN M+TGY
Sbjct: 144 GKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYA 203
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ E + L +M ++PD+ T+ SVL+AC++L SL+ G + HV +G S
Sbjct: 204 QNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRIS 263
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
ALI MY KCGSI S F + DV WNAMI A HG+ AL GEM +
Sbjct: 264 ICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNR 323
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V+ D ITF+ LLSAC HAG V E F+ M + + + + EH+ C+VD+L R +++A
Sbjct: 324 VEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKA 383
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
++I+ MPFE I GALL+AC +H ++++G+ AK + S G ++ +N+YA+
Sbjct: 384 YKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNS-GAYVVLSNIYAA 442
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G W E R R +M + G+ K S +E++ H FL H
Sbjct: 443 AGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASH 486
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M ++G+ D+ + +L A L+S G H +K+G+ + + AL+ MY
Sbjct: 218 MLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGS 277
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA------MKLIDLMPLKDVTSFNIMI 114
I D+ F ++ D+++WN+M+ AFA G D A M+ + P D +F ++
Sbjct: 278 ILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEP--DGITFLSLL 335
Query: 115 SGYARIGKIHSARYIFDK-------VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
S GK+H + F+ VP + + L+ + G++EKA ++ ++M
Sbjct: 336 SACGHAGKVHESLNWFNSMIESYKIVPRPE--HFACLVDILSRGGQVEKAYKIIQEM 390
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/477 (33%), Positives = 257/477 (53%), Gaps = 51/477 (10%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+HG T++ G + LL++ + A KV P+ + +N ++ A++S Q
Sbjct: 7 IHGYTLRNGIDQTKILIEKLLEIPN----LHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQ 62
Query: 92 MDHA-------MKLIDLMPLKDVTSFNIMISG---------------------------- 116
H M L +P + +FN + S
Sbjct: 63 HQHQCFSLYSQMLLHSFLP--NQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFA 120
Query: 117 -------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
Y ++G + AR +FD++P + V +WN+++ + G+M+ A E+F+ M +NV
Sbjct: 121 ATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNV 180
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++W TM++GY RS+ Y E + LF M + + P+ +T+ S+ A ANLG+LE G R+
Sbjct: 181 VSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEA 240
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGY 287
YA NG N + + A+++MYAKCG I+ + +VF + ++++ WN+MI+GLA+HG
Sbjct: 241 YARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECC 300
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
LKL +M DD+TF+GLL AC+H G+V++G +F M F + KLEHYGCM
Sbjct: 301 KTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCM 360
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
VDLLGRA L A E+I+ MP +P I GALL AC H ++E+ + A+ + A + +
Sbjct: 361 VDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFALEPW-N 419
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ +N+YAS GQW+ + R +M + I K+AG S IE G HKF+ H
Sbjct: 420 PGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHKFIVEDRSH 476
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 144/319 (45%), Gaps = 43/319 (13%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ ++F L A LSS +G MLH IK+GF ++ TALL MY + ++ A K+
Sbjct: 81 PNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKL 140
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F++MP + + WN+M+ A G MD A++L LMP ++V S+ MISGY+R K A
Sbjct: 141 FDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEAL 200
Query: 128 YIF-----DKVPAKDVVSWNSLILAYTNAGEME---------KAGEMFKKMLVKNVI--- 170
+F +K + V+ S+ A+ N G +E + FK + V N +
Sbjct: 201 GLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEM 260
Query: 171 ------------------------TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
+WN+M+ G + + L+D+M PD +T
Sbjct: 261 YAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVT 320
Query: 207 VTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+L AC + G +E G I T + + ++D+ + G + ++ EV +
Sbjct: 321 FVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRM 380
Query: 266 QVK-DVFCWNAMILGLALH 283
+K D W A++ + H
Sbjct: 381 PMKPDSVIWGALLGACSFH 399
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 41/261 (15%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
QE G+ + + + A L + IG + K GF ++YV A+L+MY I
Sbjct: 208 QEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKI 267
Query: 62 DDAFKVFEKMPE-KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
D A+KVF ++ +++ +WNSM+ A G+ +KL D M L + TS
Sbjct: 268 DVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQM-LGEGTS----------- 315
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVIT----WNTM 175
D V++ L+LA T+ G +EK +FK M N+I + M
Sbjct: 316 ---------------PDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCM 360
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG--ARIHVYATDN 233
V R+ E ++ M +KPD + ++L AC+ ++E A ++A +
Sbjct: 361 VDLLGRAGQLREAYEVIQRMP---MKPDSVIWGALLGACSFHDNVELAEIAAESLFALE- 416
Query: 234 GLASNPHATTALIDMYAKCGS 254
NP L ++YA G
Sbjct: 417 --PWNPGNYVILSNIYASAGQ 435
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/471 (36%), Positives = 256/471 (54%), Gaps = 12/471 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M L + DN++FP + L+S H K + +L+ Y
Sbjct: 113 MMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGL 172
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD-----VTSFNIMIS 115
+ A KVF+++P +D ++WNSM+ +A G A+++ M +D S ++
Sbjct: 173 VASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLG 232
Query: 116 GYARIGKIHSARYIFDKVPAKDVV--SW--NSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+G + R++ V + + S+ ++LI Y GE+E A +F M ++VIT
Sbjct: 233 ACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVIT 292
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN +++GY ++ + E + LF MK V + +T+T+VLSACA +G+L+ G +I YA+
Sbjct: 293 WNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYAS 352
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G + TALIDMYAK GS++ + VF K+ WNAMI LA HG AL
Sbjct: 353 QRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALS 412
Query: 292 LLGEMNDS--CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L M+D + +DITF+GLLSAC HAGLV EG LF M FG+ K+EHY CMVD
Sbjct: 413 LFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVD 472
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LL RA L A +LI MP +P + LGALL AC ++++IG+RV +M+ + + + G
Sbjct: 473 LLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMIL-EVDPSNSG 531
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
++ + +YA+ WE++ R R +M GI KT G S IEV H+F AG
Sbjct: 532 NYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLHEFHAG 582
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
Y + LF M + ++ PD T +CANL SL H L S+PH +
Sbjct: 103 YPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHS 162
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKA 303
LI YA+CG + + +VF + +D WN+MI G A G A+++ EM +
Sbjct: 163 LITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEP 222
Query: 304 DDITFIGLLSACSHAGLVQEG 324
D+++ + LL AC G ++ G
Sbjct: 223 DEMSLVSLLGACGELGDLELG 243
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/468 (34%), Positives = 251/468 (53%), Gaps = 30/468 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ D + +L + +G +H IK+ F + LL MY
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGD 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A +VFEKM E+++++W SM+ + G+ D A++L+ M + DV + ++
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHA 361
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
AR G + + + + D + A ++ S N+L+ YT G M+ A +F M+VK++I+W
Sbjct: 362 CARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISW 421
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTM+ G +KPD T+ +L ACA+L +LE G IH Y
Sbjct: 422 NTMI---------------------GELKPDSRTMACILPACASLSALERGKEIHGYILR 460
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NG +S+ H AL+D+Y KCG + + +F KD+ W MI G +HGYG A+
Sbjct: 461 NGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIAT 520
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM D+ ++ D+++FI +L ACSH+GL+++G F M+ DF + KLEHY CMVDLL
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R L +A E IE +P P +I GALL C I+ D+E+ ++VA+ V + + G +
Sbjct: 581 RTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERV-FELEPENTGYYV 639
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ AN+YA +WEE R R + G+ K G S IE+ G + F++G
Sbjct: 640 LLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSG 687
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 165/360 (45%), Gaps = 37/360 (10%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
++ +A+CG + ++ D M K+V +N M+S YA+IG + +F + K +
Sbjct: 140 LVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI--- 196
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
E A E+F K+ ++VI+WN+M++GY+ + L ++++ +M +
Sbjct: 197 --------EGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGID 248
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D T+ SVL CAN G+L G +H A + + + L+DMY+KCG ++ +L V
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRV 308
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K ++V W +MI G G A++LL +M VK D + +L AC+ +G +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSL 368
Query: 322 QEGCELF-----SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--------- 367
G ++ + ME + V L +D+ + +D A + M
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNAL------MDMYTKCGSMDGANSVFSTMVVKDIISWN 422
Query: 368 ----PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCG 422
+P + +L AC LE G + + ++ Y SD + +LY CG
Sbjct: 423 TMIGELKPDSRTMACILPACASLSALERGKEIHGYI-LRNGYSSDRHVANALVDLYVKCG 481
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 153/312 (49%), Gaps = 40/312 (12%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMI-- 114
+ A ++F+K+ ++D+I+WNSM+ + S G + +++ M + T ++++
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGC 261
Query: 115 --SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
SG +GK +HS + + N+L+ Y+ G+++ A +F+KM +NV++
Sbjct: 262 ANSGTLSLGKAVHS--LAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W +M+ GY R + L +M+ VK D + TS+L ACA GSL+ G +H Y
Sbjct: 320 WTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIK 379
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N + SN AL+DMY KCGS++ + VF VKD+ WN MI
Sbjct: 380 ANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI-------------- 425
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL- 350
GE+ K D T +L AC+ ++ G E+ + ++ G + +VDL
Sbjct: 426 --GEL-----KPDSRTMACILPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLY 477
Query: 351 -----LGRARLL 357
LG ARLL
Sbjct: 478 VKCGVLGLARLL 489
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 250/460 (54%), Gaps = 42/460 (9%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-------- 96
+ +++ ++G + +A K+F++M EKD++ W++++ F + A+
Sbjct: 175 IIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHK 234
Query: 97 --------------------------KLIDLMPLKDVTSF-----NIMISGYARIGKIHS 125
KLI + LK T N +I Y++ G I
Sbjct: 235 IGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMV 294
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD+ D++SWNS+I Y ++ A +F M K+V++W++M++GY ++ L+
Sbjct: 295 ARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 354
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
E + LF EM+ KPD T+ SV+SACA L +LE G +H Y NGL N T L
Sbjct: 355 DETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTL 414
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
IDMY KCG +E +LEVFY K + WNA+ILGLA++G ++L + M V ++
Sbjct: 415 IDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNE 474
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
ITF+G+L AC H GLV EG F M D + ++HYGCMVDLLGRA L A EL+
Sbjct: 475 ITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 534
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQW 424
MP P + GALL AC H D E+G RV K++ + ++ DG ++ +N+YAS G+W
Sbjct: 535 RMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDH--DGFHVLLSNIYASKGKW 592
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ R MM ++K G S+IE NG H+FLAG H
Sbjct: 593 DDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTH 632
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 186/391 (47%), Gaps = 63/391 (16%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
ADNY++PLL++A I S +H +K GF VYV+
Sbjct: 76 ADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVR------------------- 116
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
N++++ F+ C M A ++ + + D S+N +++GY IG + A+
Sbjct: 117 ------------NTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAK 164
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+I+ ++P + +++ NS+I+ + G + +A ++F +ML K+++TW+ ++ + ++++Y E
Sbjct: 165 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 224
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ F M V D + S LSACANL + G IH + G S + ALI
Sbjct: 225 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY 284
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL--------------------------A 281
MY+KCG I + ++F ++ + D+ WN+MI G
Sbjct: 285 MYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSM 344
Query: 282 LHGYGY-----AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
+ GY L L EM S K D+ T + ++SAC+ +++G + + ++++ G
Sbjct: 345 ISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN-G 403
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+T + ++D+ + ++ A+E+ M
Sbjct: 404 LTINVILGTTLIDMYMKCGCVETALEVFYGM 434
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 43/326 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M ++GV D L A L +G ++H ++K G ++ +Q AL+ MY
Sbjct: 232 MHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGD 291
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
I A K+F++ D+I+WNSM+ + C +D+A + D MP KDV S++ MISGY
Sbjct: 292 IMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQN 351
Query: 118 --------------------------------ARIGKIHSARYIFDKVPAK----DVVSW 141
AR+ + +++ + +V+
Sbjct: 352 DLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILG 411
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+LI Y G +E A E+F M+ K + TWN ++ G + L +D+F MK +V
Sbjct: 412 TTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVT 471
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYAT--DNGLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T VL AC ++G ++ G H Y+ D+ + N ++D+ + G ++++
Sbjct: 472 PNEITFMGVLGACRHMGLVDEGQH-HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAE 530
Query: 260 EVFYK-SQVKDVFCWNAMILGLALHG 284
E+ + DV W A++ HG
Sbjct: 531 ELLNRMPMTPDVATWGALLGACKKHG 556
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N WN M+ Y+++ L+ M + + D T ++ AC+ S ++H
Sbjct: 42 NCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVH 101
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ G S+ + LI+ ++ C ++ + VF +S V D WN+++ G G
Sbjct: 102 NHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVE 161
Query: 288 AALKLLGEMNDSCVKADD--ITFIGLLSACSHAGLVQEGCELFSRM-EKD 334
A + +M + + A + I G+ GLV E C+LF M EKD
Sbjct: 162 EAKHIYHQMPERSIIASNSMIVLFGM------RGLVVEACKLFDEMLEKD 205
>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 656
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/422 (36%), Positives = 246/422 (58%), Gaps = 15/422 (3%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
TA++K Y ID+AF++F +MP++++ +WN M+ + +++ A++L + MP ++
Sbjct: 210 TAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEV 269
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+ +++G AR G + AR FD +P KD+ +WN++I AY + G M +A +F M KN
Sbjct: 270 SWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKN 329
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL--ETGARI 226
+++WN ++ GY R+ + M N KP+ T+TSVL+AC ++ L G I
Sbjct: 330 IVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTACDSILELMQAHGLVI 389
Query: 227 HV-YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
H+ + D LA+ L+ Y++CG + + +F + ++KD+ W AMIL + HG
Sbjct: 390 HLGFEQDKVLAN------GLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGC 443
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
G AL++ M S K D ITF+GLLSACSHAGLV++G LF M +GV + EHY
Sbjct: 444 GPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYS 503
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTE---SILGALLSACVIHQDLEIGDRVAKMVCAK 402
C+VD+LGRA +++A++++ MP P E ++LGALL AC +H+D+ + + + + + K
Sbjct: 504 CLVDILGRAGEMNKAMKVVSEMP--PHECDGAVLGALLGACRLHKDVGLANHIGEKLIEK 561
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
S G ++ AN YA+CG+W E R M + + K G S IEV G H F
Sbjct: 562 EP-TSSGSYVLLANAYAACGKWNEFAEVRKEMKERNVKKEPGFSQIEVKGKSHVFFVRDR 620
Query: 463 GH 464
H
Sbjct: 621 SH 622
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 150/272 (55%), Gaps = 8/272 (2%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V +A++ Y +D A +VF++M E+++ +W S++ + G +D AM+L + MP
Sbjct: 112 NVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMP 171
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
K+V S+ + GYA+ G I AR IF+++P K++++W +++ +Y E+++A E+F +
Sbjct: 172 EKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQ 231
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +N+ +WN M++G + + E + LF+ M N ++ T++++ A G +E
Sbjct: 232 MPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRN----EVSWTTLVTGLARNGMMELA 287
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+ + +A A A+I Y GS+ ++ +F K++ WNA+I G A +
Sbjct: 288 RKYFDHMPTKDIA----AWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARN 343
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
G +L+ L M S K ++ T +L+AC
Sbjct: 344 GPESNSLRYLILMLRSNFKPNETTITSVLTAC 375
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 135/291 (46%), Gaps = 43/291 (14%)
Query: 41 FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID 100
F Y + G + +A KVF++MP +D +++ SM+ + + A L
Sbjct: 47 FASDTYESNVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFR 106
Query: 101 LMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEM 160
+P ++V + + MISGY R G++ AR +FD++ ++V SW SL+ Y G +++A +
Sbjct: 107 EIPERNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRL 166
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
F +M KNV++W T V GY ++ E D+F++M N+
Sbjct: 167 FNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNII------------------- 207
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
A TA++ Y + I+++ E+FY+ ++++ WN MI G
Sbjct: 208 --------------------AWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGC 247
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
A++L M + +++++ L++ + G+++ + F M
Sbjct: 248 INANRLNEAIQLFNSM----PQRNEVSWTTLVTGLARNGMMELARKYFDHM 294
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCID--DAFKVFEKMPEKDIIAWNSMLDAFASCG 90
HG I GF + L+ Y RC D A +F+++ KDI++W +M+ A+++ G
Sbjct: 385 HGLVIHLGFEQDKVLANGLVTTYS--RCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHG 442
Query: 91 QMDHAMKLIDLM----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS-----W 141
HA+++ M D +F ++S + G + + +FD + V +
Sbjct: 443 CGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHY 502
Query: 142 NSLILAYTNAGEMEKAGEMFKKM 164
+ L+ AGEM KA ++ +M
Sbjct: 503 SCLVDILGRAGEMNKAMKVVSEM 525
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/433 (33%), Positives = 249/433 (57%), Gaps = 32/433 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A ++F++MP++D++AW +ML + G++ A L D MP ++V S+ MISGYA+
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQN 218
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF------------------- 161
G+++ AR +F+ +P ++ VSW ++++ Y AG +E A E+F
Sbjct: 219 GEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFG 278
Query: 162 ------------KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
+KM ++ TW+ M+ Y +++ +E + F EM V+P+Y +V S
Sbjct: 279 QRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS 338
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+L+ CA L L+ G +H + A +ALI MY KCG+++++ VF+ + KD
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKD 398
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WN+MI G A HG G AL + +M + + D IT+IG L+ACS+ G V+EG E+F+
Sbjct: 399 IVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFN 458
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M + + EHY CMVDLLGR+ L++ A +LI+ MP EP I GAL+ AC +H++
Sbjct: 459 SMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNA 518
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
EI + AK + + + G ++ +++Y S G+WE+A++ R ++ + K+ G S IE
Sbjct: 519 EIAEVAAKKLL-ELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIE 577
Query: 450 VNGSYHKFLAGGI 462
+ H F +G +
Sbjct: 578 YDKRVHLFTSGDV 590
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 151/311 (48%), Gaps = 47/311 (15%)
Query: 29 GLMLHGQTIKTG--------FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80
GL L QT+ F V T+LL+ Y + DA ++F++MPE++ +++
Sbjct: 88 GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYT 147
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
+L G+++ A +L D MP +DV ++ M+SGY + G+I AR +FD++P ++VVS
Sbjct: 148 VLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS 207
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
W ++I Y GE+ A ++F+ M +N ++W M+ GY+++ + +LF+ M
Sbjct: 208 WTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAM----- 262
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P++ ++AC A++ + + G ++ +
Sbjct: 263 -PEH-----PVAAC----------------------------NAMMVGFGQRGMVDAAKT 288
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF K + +D W+AMI + + AL EM V+ + + I +L+ C+ +
Sbjct: 289 VFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAV 348
Query: 321 VQEGCELFSRM 331
+ G E+ + M
Sbjct: 349 LDYGREVHAAM 359
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 131/304 (43%), Gaps = 45/304 (14%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS----- 115
I+ A FE MP + ++N++L + D A+ L MP +D+ S+N +IS
Sbjct: 33 IEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR 92
Query: 116 ----------------------------GYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
GY R G + A +F ++P ++ VS+ L+
Sbjct: 93 RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
+AG + +A +F +M ++V+ W M++GY ++ E LFDEM NV ++
Sbjct: 153 LLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSW 208
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
T+++S A G + ++ + N + TA++ Y + G +E + E+F
Sbjct: 209 TAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAMPE 264
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
V NAM++G G AA + +M + DD T+ ++ A + E
Sbjct: 265 HPVAACNAMMVGFGQRGMVDAAKTVFEKMRER----DDGTWSAMIKAYEQNEFLMEALST 320
Query: 328 FSRM 331
F M
Sbjct: 321 FREM 324
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 125/256 (48%), Gaps = 14/256 (5%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N+ + A G ++ A + MPL+ S+N +++GY R +A +F ++P++D+
Sbjct: 21 NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80
Query: 140 SWNSLI--LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
S+N+LI L+ + A + +V+++ +++ GY+R L + + LF +M
Sbjct: 81 SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
N +++ T +L + G + R+ D + A TA++ Y + G I +
Sbjct: 141 RN----HVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVV----AWTAMLSGYCQAGRITE 192
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +F + ++V W AMI G A +G A KL M + +++++ +L
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQ 248
Query: 318 AGLVQEGCELFSRMEK 333
AG V++ ELF+ M +
Sbjct: 249 AGHVEDAAELFNAMPE 264
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 112/249 (44%), Gaps = 19/249 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + S +L L+ G +H ++ F V+ +AL+ MY +D A
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKA 387
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM----ISGYARI 120
+VF KDI+ WNSM+ +A G + A+ + M L ++ I ++ +
Sbjct: 388 KRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT 447
Query: 121 GKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
GK+ R IF+ + + ++ ++ +G +E+A ++ K M V+ + + W
Sbjct: 448 GKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507
Query: 175 MVTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
++ G R E+ ++ E++ GN P Y+ ++ + ++ +G E +++ +
Sbjct: 508 LM-GACRMHRNAEIAEVAAKKLLELEPGNAGP-YVLLSHIYTS---VGRWEDASKMRKFI 562
Query: 231 TDNGLASNP 239
+ L +P
Sbjct: 563 SSRNLNKSP 571
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 172/538 (31%), Positives = 276/538 (51%), Gaps = 86/538 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + +P+L+K+AG G+ H +K G +V+ A++ MY L
Sbjct: 91 MQGCGVRPDAFVYPILIKSAGTG-----GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGP 145
Query: 61 IDDAFKVFEK---------------------------------MPEKDIIAWNSMLDAFA 87
I A KVF++ MPE+++I W +M+ +A
Sbjct: 146 IGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYA 205
Query: 88 SCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP----AKDVVSWNS 143
++ A + D MP + V S+N M+SGYA+ G A +FD++ D +W +
Sbjct: 206 KVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVT 265
Query: 144 LILA-----------------------------------YTNAGEMEKAGEMFKKMLVKN 168
+I A Y G+++ A ++F M +N
Sbjct: 266 VISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRN 325
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
V+TWN+M+ GY ++ ++LF EM A + PD +T+ SV+SAC +LG+LE G +
Sbjct: 326 VVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVV 385
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ T+N + + A+I MY++CGS+E + VF + +DV +N +I G A HG+G
Sbjct: 386 RFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGV 445
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
A+ L+ M + ++ D +TFIG+L+ACSHAGL++EG ++F + KD + +HY CM
Sbjct: 446 EAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI-KDPAI----DHYACM 500
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYL 406
VDLLGR L+ A +E MP EP + G+LL+A IH+ +E+G+ A K+ + +
Sbjct: 501 VDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPD-- 558
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ G ++ +N+YAS G+W++ R R M G+ KT G S +E G HKF+ H
Sbjct: 559 NSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSH 616
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 265/461 (57%), Gaps = 11/461 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ GV D ++FPLLLK S + M++ Q K GF +++ AL+ + +
Sbjct: 99 LRQKGVQPDKHTFPLLLKTFS-KSIAQNPFMIYAQIFKLGFDLDLFIGNALIPAFANSGF 157
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD-----VTSFNIM-- 113
++ A +VF++ P +D +AW ++++ + A+K M L+D VT +I+
Sbjct: 158 VESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRA 217
Query: 114 --ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ G A G+ Y+ D +++L+ Y G E A ++F ++ ++V+
Sbjct: 218 AALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVC 277
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W +V GY++S + + + F +M + NV P+ T++SVLSACA +G+L+ G +H Y
Sbjct: 278 WTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIE 337
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N + N TAL+DMYAKCGSI+++L VF VK+V+ W +I GLA+HG AL
Sbjct: 338 CNKINMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALN 397
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+ M S ++ +++TF+G+L+ACSH G V+EG LF M+ + + +++HYGCMVD+L
Sbjct: 398 IFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDML 457
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GRA L+ A ++I+ MP +P+ +LGAL AC++H+ E+G+ + ++ + S G
Sbjct: 458 GRAGYLEDAKQIIDNMPMKPSPGVLGALFGACLVHKAFEMGEHIGNLLVNQQPNHS-GSY 516
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
+ ANLY C WE A + R +M +VK G S IEV+G
Sbjct: 517 ALLANLYKMCQNWEAAAQVRKLMKGLRVVKAPGYSRIEVDG 557
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 171/479 (35%), Positives = 255/479 (53%), Gaps = 50/479 (10%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMY--GSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
H I TG H LLK+ S + A ++F+++P+ D+ +N+M+ A A
Sbjct: 35 HAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIP 94
Query: 91 QMDH--------AMKLIDLMPLKDVTSF-------------------------------- 110
H +++ +P + F
Sbjct: 95 TSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFV 154
Query: 111 -NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
N MI YA G + AR +FD +D+ SWN +I Y +GE+ +A EMF +M ++V
Sbjct: 155 TNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDV 214
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++W T++ GY++ + E +DLF EM P+ T+ S L+ACANL +L+ G IHVY
Sbjct: 215 VSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVY 274
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVF---YKSQVKDVFCWNAMILGLALHGYG 286
+ + N +L+DMYAKCG I+ + +VF Y ++K V+ WNAMI G A+HG
Sbjct: 275 IDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKS 333
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A+ L +M V + +TF+ LL+ACSH LV+EG F M +G+ ++EHYGC
Sbjct: 334 KEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGC 393
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA-KSNY 405
MVDLLGR+ LL A E + MP P +I GALL AC IH+D+E G R+ K++ S++
Sbjct: 394 MVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDH 453
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ G ++ ANLY++ GQW+EA R + +G KT G S IE+NG +H+FL G H
Sbjct: 454 I--GCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSH 510
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 43/322 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + Y+F + KA G G + IK G +++V A+++MY + +D+A
Sbjct: 112 GFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEA 171
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+VF+ ++D+ +WN M+ + G++ A ++ D M +DV S+ +I+GY ++G
Sbjct: 172 RRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFK 231
Query: 125 SARYIFDKV----PA------------------------------KDVVSWNSLILA--- 147
A +F ++ P K + N +LA
Sbjct: 232 EALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLL 291
Query: 148 --YTNAGEMEKAGEMFKKM--LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
Y GE++ A ++F L V WN M+ GY E +DLF++MK V P+
Sbjct: 292 DMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPN 351
Query: 204 YLTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE-V 261
+T ++L+AC++ +E G A+ G+ ++D+ + G ++++ E V
Sbjct: 352 KVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETV 411
Query: 262 FYKSQVKDVFCWNAMILGLALH 283
F D W A++ +H
Sbjct: 412 FNMPMAPDATIWGALLGACRIH 433
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 217/359 (60%), Gaps = 1/359 (0%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
DV N +++ Y+ +G I SA Y+F ++ DVVSW S++ Y +G++ A ++F KM
Sbjct: 147 DVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMP 206
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
KN++TW+ M++GY ++ + + ++L+ +++ V + + SV+++CA+LG+LE G R
Sbjct: 207 EKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGER 266
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
H Y N + N TAL+DMYA+CGSI++++ VF + +D W +I G A+HGY
Sbjct: 267 AHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGY 326
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
AL+ M + + +ITF +LSACSH GLV+ G ELF M++D+ + +LEHYG
Sbjct: 327 AEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYG 386
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
CMVDLLGRA L A + + MP +P I GALL AC IH++ EI +R K +
Sbjct: 387 CMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPE 446
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G ++ +N+YA +WE R MM + G+VK G ++ E++G HKF G H
Sbjct: 447 HS-GYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTH 504
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 148/320 (46%), Gaps = 41/320 (12%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ DN ++P L+KA S +G+ HGQ I+ GF VYVQ +L+ MY +L I A
Sbjct: 108 GLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSA 167
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR----- 119
VF ++ D+++W SM+ + G + A KL D MP K++ ++++MISGYA+
Sbjct: 168 SYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFD 227
Query: 120 ------------------------------IGKI----HSARYIFDKVPAKDVVSWNSLI 145
+G + + YI +++ +L+
Sbjct: 228 KAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALV 287
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y G ++KA +F ++ ++ ++W T++ G+ + ++ F M+ + P +
Sbjct: 288 DMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREI 347
Query: 206 TVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T T+VLSAC++ G +E G + D + ++D+ + G + ++ + +
Sbjct: 348 TFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNE 407
Query: 265 SQVK-DVFCWNAMILGLALH 283
+K + W A++ +H
Sbjct: 408 MPMKPNAPIWGALLGACRIH 427
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 125/294 (42%), Gaps = 43/294 (14%)
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
DV + + LI N ++ A ++F ++ N+ +N+ + G+ S+ + + + K
Sbjct: 46 DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+ PD LT ++ AC GSL+ G + H +G S+ + +L+ MY+ G I+
Sbjct: 106 RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ VF + DV W +M+ G +K+ D+T
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGY--------------------IKSGDVT--------- 196
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE---LIEAMPFEPTE 373
+LF +M + VT + M+ + D+AIE L+++ E
Sbjct: 197 ------SARKLFDKMPEKNLVT-----WSVMISGYAKNSFFDKAIELYFLLQSEGVHANE 245
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
+++ +++++C LE+G+R + ++ ++YA CG ++A
Sbjct: 246 TVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKA 299
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q GVHA+ ++ + L + +G H ++ ++ + TAL+ MY
Sbjct: 236 LQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGS 295
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
ID A VF+++P +D ++W +++ FA G + A++ M +T I +
Sbjct: 296 IDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTA 351
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 255/448 (56%), Gaps = 13/448 (2%)
Query: 28 IGLMLHGQTIKTGFCGH--VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA 85
+G +H ++ G CG V + TAL+ MY + A +VF+ + + II+W +M+ A
Sbjct: 243 LGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAA 302
Query: 86 FASCGQMDHAMKLI-----DLMPLKDVTSFNIM----ISGYARIGKIHSARYIFDKVPAK 136
+ C ++ ++L + M ++T +++ +G +GK+ A + +
Sbjct: 303 YIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLS 362
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
V++ + I Y G++ A +F K+++ W+ M++ Y ++ E D+F M
Sbjct: 363 LVLA-TAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMT 421
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
++P+ T+ S+L CA GSLE G IH Y G+ + T+ +DMYA CG I+
Sbjct: 422 GCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDID 481
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ +F ++ +D+ WNAMI G A+HG+G AAL+L EM V +DITFIG L ACS
Sbjct: 482 TAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACS 541
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
H+GL+QEG LF +M +FG T K+EHYGCMVDLLGRA LLD A ELI++MP P ++
Sbjct: 542 HSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVF 601
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
G+ L+AC +H+++++G+ AK + + S ++M +N+YAS +W + R M D
Sbjct: 602 GSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLM-SNIYASANRWGDVAYIRRAMKD 660
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
GIVK G S IEVNG H+F+ G H
Sbjct: 661 EGIVKEPGVSSIEVNGLLHEFIMGDREH 688
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 186/396 (46%), Gaps = 12/396 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ DN+ P +LKA ++ S +G +HG +K GF G V+V AL+ MY +
Sbjct: 115 MRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGS 174
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-MIS---- 115
+ A +F+K+ KD+++W++M+ ++ G +D A+ L+ M + V I MIS
Sbjct: 175 LALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHV 234
Query: 116 ----GYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
++GK +H+ K V +LI Y + A +F + ++I
Sbjct: 235 LAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASII 294
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W M+ Y+ E V LF +M + P+ +T+ S++ C G+LE G +H +
Sbjct: 295 SWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFT 354
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
NG + TA IDMY KCG + + VF + KD+ W+AMI A + A
Sbjct: 355 LRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAF 414
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ M ++ ++ T + LL C+ AG ++ G + S ++K G+ + VD+
Sbjct: 415 DIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQ-GIKGDMILKTSFVDM 473
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+D A L A + S+ A++S +H
Sbjct: 474 YANCGDIDTAHRLF-AEATDRDISMWNAMISGFAMH 508
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N + ++T Y+++ + ++ M+ + + D + SVL AC + S G +H
Sbjct: 88 NAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVH 147
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ NG + ALI MY++ GS+ + +F K + KDV W+ MI G
Sbjct: 148 GFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLD 207
Query: 288 AALKLLGEMNDSCVKADDITFIGL 311
AL LL +M+ VK +I I +
Sbjct: 208 EALDLLRDMHVMRVKPSEIGMISI 231
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 39/247 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ + + LL S +G +H K G G + ++T+ + MY +
Sbjct: 420 MTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGD 479
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A ++F + ++DI WN+M+ FA G + A++L + M VT +I I
Sbjct: 480 IDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITF-----I 534
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML-----VKNVITWNTM 175
G +H A +++G +++ +F KM+ V + M
Sbjct: 535 GALH----------------------ACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCM 572
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R+ L E +L M ++P+ S L+AC L ++ +A L
Sbjct: 573 VDLLGRAGLLDEAHELIKSMP---MRPNIAVFGSFLAAC----KLHKNIKLGEWAAKQFL 625
Query: 236 ASNPHAT 242
+ PH +
Sbjct: 626 SLEPHKS 632
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 173/500 (34%), Positives = 269/500 (53%), Gaps = 47/500 (9%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFK 66
AD + +KAA +SS +H K GF G V V AL+ MY S + DA K
Sbjct: 130 ADARTIVFAVKAA--TTSSSPAEAIHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARK 187
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL--------------------------ID 100
+F++M ++D+++W +++D +A G D A ++ I
Sbjct: 188 LFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIG 247
Query: 101 LMPLK--------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
L+ L V N ++ + + G + SA+ IFD +P KDV SW S++
Sbjct: 248 LLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVS 307
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
AY G++E AG++FK++ +N ++W+ MV Y ++ L E + +F++M A V+P T
Sbjct: 308 AYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDAT 367
Query: 207 VTSVLSACANLGSLETGARIH-VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ SVLSACA LG L+ G ++ Y + + + + A IDM+AKCG + + +F
Sbjct: 368 LVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNM 427
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ K+V WN MI+ ALHG AL L + + D+IT+IG+LSACSH+GLV EG
Sbjct: 428 EDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGR 487
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F M+ +G+ + EHY CM+DLLG+ LL+ A E+ +MP E+ GALL+AC +
Sbjct: 488 YHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRM 547
Query: 386 HQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
H ++EIG A K+V + G ++ + +YAS +W + R +M D G+ K G
Sbjct: 548 HGNVEIGKCAADKLVGLDPS--DSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPG 605
Query: 445 SSVIEVNGSYHKFLAGGIGH 464
S IEV+G +H+FLA + H
Sbjct: 606 CSSIEVDGKFHEFLAADVSH 625
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 114/275 (41%), Gaps = 10/275 (3%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
N TM+ G+LR+ + LF + + D T+ V + A S I
Sbjct: 95 PNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTI--VFAVKAATTSSSPAEAI 152
Query: 227 HVYATDNG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
H A G + + AL+ MYA S+ + ++F + +DV W ++ G A G
Sbjct: 153 HCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGL 212
Query: 286 GYAALKLLGEMNDSCVK-ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
A ++ M + +++T + SA GL+ G + + + GV +
Sbjct: 213 PDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLG-RMVHQCVVESGVRMSVNLE 271
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
+VD+ G+ + A E+ + MP + S +++SA DLE ++ K + N
Sbjct: 272 NALVDMFGKCGCVASAKEIFDGMPIKDVYS-WTSMVSAYAKCGDLENAGKLFKEI-PNRN 329
Query: 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
+S M+ A Y+ EEA R N M G+
Sbjct: 330 AVS-WSCMVAA--YSQANLPEEAMRIFNDMIAAGV 361
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 263/476 (55%), Gaps = 16/476 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D+++FP LLKA LS +G +H Q + GF V+VQ L+ +Y R
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169
Query: 61 IDDAFKVFE--KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMI 114
+ A VFE +PE+ I++W +++ A+A G+ A+++ M DV + ++
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVL 229
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVI 170
+ + + + R I V + L+++ Y G++ A +F KM N+I
Sbjct: 230 NAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M++GY ++ E +D+F EM +V+PD +++TS +SACA +GSLE ++ Y
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ + ++ALIDM+AKCGS+E + VF ++ +DV W+AMI+G LHG A+
Sbjct: 350 GRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L M V +D+TF+GLL AC+H+G+V+EG F+ M D + + +HY C++DL
Sbjct: 410 SLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLM-ADHKINPQQQHYACVIDL 468
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA--KSNYLSD 408
LGRA LD+A E+I+ MP +P ++ GALLSAC H+ +E+G+ A+ + + SN
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN---T 525
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G + +NLYA+ W+ R M + G+ K G S +EV G F G H
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSH 581
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 159/334 (47%), Gaps = 14/334 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+H+D++ L+ A + +H + + G ++ T L+ S I A
Sbjct: 17 GIHSDSFYASLIDSA----THKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFA 72
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARI 120
+VF+ +P I WN+++ ++ A+ + M L V+ +F ++ + +
Sbjct: 73 RQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGL 132
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--KNVITWNT 174
+ R++ +V DV N LI Y + A +F+ + + + +++W
Sbjct: 133 SHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTA 192
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
+V+ Y ++ +E +++F M+ +VKPD++ + SVL+A L L+ G IH G
Sbjct: 193 IVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L P +L MYAKCG + + +F K + ++ WNAMI G A +GY A+ +
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
EM + V+ D I+ +SAC+ G +++ ++
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMY 346
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 89/235 (37%), Gaps = 37/235 (15%)
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+IH GL + T LI + G I + +VF +F WNA+I G + +
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
+ AL + M + V D TF LL ACS +Q G + +++ + G +
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR-LGFDADVFVQ 157
Query: 345 GCMVDLLGRARLLDRAIELIEAMPF-------------------EPTESI---------- 375
++ L + R L A + E +P EP E++
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMD 217
Query: 376 -------LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
L ++L+A QDL+ G + V + L+ +YA CGQ
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 147/433 (33%), Positives = 249/433 (57%), Gaps = 32/433 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A ++F++MP++D++AW +ML + G++ A L D MP ++V S+ MISGYA+
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQN 218
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF------------------- 161
G+++ AR +F+ +P ++ VSW ++++ Y AG +E A E+F
Sbjct: 219 GEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFG 278
Query: 162 ------------KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
+KM ++ TW+ M+ Y +++ +E + F EM V+P+Y +V S
Sbjct: 279 QRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS 338
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+L+ CA L L+ G +H + A +ALI MY KCG+++++ VF+ + KD
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKD 398
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WN+MI G A HG G AL + +M + + D IT+IG L+ACS+ G V+EG E+F+
Sbjct: 399 IVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFN 458
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M + + EHY CMVDLLGR+ L++ A +LI+ MP EP I GAL+ AC +H++
Sbjct: 459 SMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNA 518
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
EI + AK + + + G ++ +++Y S G+WE+A++ R ++ + K+ G S IE
Sbjct: 519 EIAEFAAKKLL-ELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIE 577
Query: 450 VNGSYHKFLAGGI 462
+ H F +G +
Sbjct: 578 YDKRVHLFTSGDV 590
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 150/311 (48%), Gaps = 47/311 (15%)
Query: 29 GLMLHGQTIKTG--------FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80
GL L QT+ F V T+LL+ Y + DA ++F++MPE++ +++
Sbjct: 88 GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYT 147
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
+L G+++ A +L D MP +DV ++ M+SGY + G+I AR +FD++P ++VVS
Sbjct: 148 VLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS 207
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
W ++I Y GE+ A ++F+ M +N ++W M+ GY+++ + +LF+ M
Sbjct: 208 WTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAM----- 262
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P++ ++AC A++ + + G ++ +
Sbjct: 263 -PEH-----PVAAC----------------------------NAMMVGFGQRGMVDAAKT 288
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF K +D W+AMI + + AL EM V+ + + I +L+ C+ +
Sbjct: 289 VFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAV 348
Query: 321 VQEGCELFSRM 331
+ G E+ + M
Sbjct: 349 LDYGREVHAAM 359
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 132/304 (43%), Gaps = 45/304 (14%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS----- 115
I+ A FE MP + ++N++L + D A+ L MP +D+ S+N +IS
Sbjct: 33 IEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR 92
Query: 116 ----------------------------GYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
GY R G + A +F ++P ++ VS+ L+
Sbjct: 93 RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
+AG + +A +F +M ++V+ W M++GY ++ E LFDEM NV ++
Sbjct: 153 LLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSW 208
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
T+++S A G + ++ + N + TA++ Y + G +E + E+F
Sbjct: 209 TAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAMPE 264
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
V NAM++G G AA + +M C + DD T+ ++ A + E
Sbjct: 265 HPVAACNAMMVGFGQRGMVDAAKTVFEKM---CER-DDGTWSAMIKAYEQNEFLMEALST 320
Query: 328 FSRM 331
F M
Sbjct: 321 FREM 324
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 125/256 (48%), Gaps = 14/256 (5%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N+ + A G ++ A + MPL+ S+N +++GY R +A +F ++P++D+
Sbjct: 21 NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80
Query: 140 SWNSLI--LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
S+N+LI L+ + A + +V+++ +++ GY+R L + + LF +M
Sbjct: 81 SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
N +++ T +L + G + R+ D + A TA++ Y + G I +
Sbjct: 141 RN----HVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVV----AWTAMLSGYCQAGRITE 192
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +F + ++V W AMI G A +G A KL M + +++++ +L
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQ 248
Query: 318 AGLVQEGCELFSRMEK 333
AG V++ ELF+ M +
Sbjct: 249 AGHVEDAAELFNAMPE 264
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 111/249 (44%), Gaps = 19/249 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + S +L L+ G +H ++ F V+ +AL+ MY +D A
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKA 387
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM----ISGYARI 120
+VF KDI+ WNSM+ +A G + A+ + M L ++ I ++ +
Sbjct: 388 KRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT 447
Query: 121 GKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
GK+ R IF+ + + ++ ++ +G +E+A ++ K M V+ + + W
Sbjct: 448 GKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507
Query: 175 MVTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
++ G R E+ + E++ GN P Y+ ++ + ++ +G E +++ +
Sbjct: 508 LM-GACRMHRNAEIAEFAAKKLLELEPGNAGP-YVLLSHIYTS---VGRWEDASKMRKFI 562
Query: 231 TDNGLASNP 239
+ L +P
Sbjct: 563 SSRNLNKSP 571
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/472 (35%), Positives = 243/472 (51%), Gaps = 44/472 (9%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H I+ GFC V + AL+ MYG RC + A VFE MP +D+I+W SM + +CG
Sbjct: 100 VHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGL 159
Query: 92 MDHAM--------------------------KLIDLMPLKDVTSF--------NIMISG- 116
+ A+ L DL ++V F N+ +S
Sbjct: 160 LREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSA 219
Query: 117 ----YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK----N 168
YA I A+ +FD + +D VSWN LI AY E EK +F +M+ + N
Sbjct: 220 LVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLN 279
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+WN ++ G +++ + +++ M+ KP+ +T+TSVL AC NL SL G +IH
Sbjct: 280 YASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHG 339
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y + + TTAL+ MYAKCG +E S VF +D WN MI+ ++HG G
Sbjct: 340 YIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEE 399
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL L EM DS V+ + +TF G+LS CSH+ LV EG +F M +D V +H+ CMV
Sbjct: 400 ALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMV 459
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
D+L RA L+ A E I+ MP EPT GALL C +++++E+G R+A + +
Sbjct: 460 DVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELG-RIAANRLFEIESDNP 518
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G ++ +N+ S W EA+ R +M D G+ K G S I+V H F+ G
Sbjct: 519 GNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVG 570
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/399 (22%), Positives = 168/399 (42%), Gaps = 42/399 (10%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
+K+Y + + A +F+K+P+ D+ W ++ A G+ A++ + K+
Sbjct: 17 FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76
Query: 111 NIMI-----SGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMF 161
+ ++ A + + +A+ + + DV+ N+LI Y E A +F
Sbjct: 77 DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
+ M ++VI+W +M + Y+ L E + F +M +P+ +TV+S+L AC +L L+
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
+G +H + NG+ N ++AL++MYA C SI Q+ VF +D WN +I
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
L+ L + G M V + ++ ++ C G ++ E+ SRM+
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNS------- 309
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401
F+P + + ++L AC + L G ++ +
Sbjct: 310 --------------------------GFKPNQITITSVLPACTNLESLRGGKQIHGYIFR 343
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+ +YA CG E + R +MM V
Sbjct: 344 HWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTV 382
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 139/324 (42%), Gaps = 45/324 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G ++ + +L A L G +HG ++ G G+V+V +AL+ MY S I A
Sbjct: 174 GERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQA 233
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISGYARI 120
VF+ M +D ++WN ++ A+ + + + + M + V S+N +I G +
Sbjct: 234 QLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQN 293
Query: 121 GKIHSAR---------------------------------------YIFDKVPAKDVVSW 141
G+ A YIF +D+ +
Sbjct: 294 GRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTT 353
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+L+ Y G++E + +F M ++ ++WNTM+ E + LF EM V+
Sbjct: 354 TALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVR 413
Query: 202 PDYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T T VLS C++ ++ G I + D+ + + + ++D+ ++ G +E++ E
Sbjct: 414 PNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYE 473
Query: 261 VFYKSQVKDVF-CWNAMILGLALH 283
K ++ W A++ G ++
Sbjct: 474 FIKKMPIEPTAGAWGALLGGCRVY 497
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 113/252 (44%), Gaps = 17/252 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G + + +L A L S G +HG + F + TAL+ MY
Sbjct: 306 MQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGD 365
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
++ + +VF M ++D ++WN+M+ A + G + A+ +++D + +F ++SG
Sbjct: 366 LELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSG 425
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVKNVI- 170
+ + IFD + V ++ ++ + AG +E+A E KKM ++
Sbjct: 426 CSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAG 485
Query: 171 TWNTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
W ++ G Y +L + E+++ N +Y+ ++++L + A L S + R
Sbjct: 486 AWGALLGGCRVYKNVELGRIAANRLFEIESDN-PGNYVLLSNILVS-AKLWSEASETR-- 541
Query: 228 VYATDNGLASNP 239
D G+ NP
Sbjct: 542 KLMRDRGVTKNP 553
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 162/468 (34%), Positives = 249/468 (53%), Gaps = 30/468 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ D + +L + +G +H IK+ F + LL MY
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGD 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A +VFEKM E+++++W SM+ + G+ D A+KL+ M + DV + ++
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHA 361
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
AR G + + + + D + A ++ S N+L+ Y G ME A +F M+VK++I+W
Sbjct: 362 CARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISW 421
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTM+ G +KPD T+ VL ACA+L +LE G IH Y
Sbjct: 422 NTMI---------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILR 460
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NG +S+ H AL+D+Y KCG + + +F KD+ W MI G +HGYG A+
Sbjct: 461 NGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 520
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM D+ ++ D+++FI +L ACSH+GL+++G F M+ DF + KLEHY CMVDLL
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R L +A E IE +P P +I GALL C + D+E+ ++VA+ V + + G +
Sbjct: 581 RTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERV-FELEPENSGYYV 639
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ AN+YA +WEE R R + G+ K G S IE+ G + F++G
Sbjct: 640 LLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSG 687
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 37/360 (10%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
++ +A+CG + ++ D M K+V +N M+S YA+IG + +F + K +
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI--- 196
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
E A E+F K+ ++VI+WN+M++GY+ + L + ++ +M +
Sbjct: 197 --------EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D T+ SVL CAN G+L G +H A + + + L+DMY+KCG ++ +L V
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K ++V W +MI G G A+KLL +M VK D + +L AC+ +G +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSL 368
Query: 322 QEGCELF-----SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--------- 367
G ++ + ME + V L +D+ + ++ A + M
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNAL------MDMYAKCGSMEAANSVFSTMVVKDIISWN 422
Query: 368 ----PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCG 422
+P + +L AC LE G + + ++ Y SD + +LY CG
Sbjct: 423 TMIGELKPDSRTMACVLPACASLSALERGKEIHGYI-LRNGYSSDRHVANALVDLYVKCG 481
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T +SVL CA L S G ++H N + + L+ YA CG +++ VF
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLG----------------EMNDSCVKADDITFI 309
+ K+V+ WN M+ A G ++ L E+ D D I++
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220
Query: 310 GLLSACSHAGLVQEGCELFSRM 331
++S GL + G ++ +M
Sbjct: 221 SMISGYVSNGLTERGLGIYKQM 242
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 170/473 (35%), Positives = 265/473 (56%), Gaps = 16/473 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ L + +N++FP + A L + + H + K G + +++ MY RC
Sbjct: 108 MKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMY--FRC 165
Query: 61 IDD--AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIM 113
++ A KVF+++ EKD+++WNS+L +A G A+++ + + D S +
Sbjct: 166 GENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSV 225
Query: 114 ISGYARIGKIHSARYIFDKVPAK--DVVSW--NSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ +G + R++ V + V S+ ++LI Y+ GE+ + +F M ++
Sbjct: 226 LGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDF 285
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
ITWN ++ Y ++ + E + LF MK V P+ +T+T+VLSACA++G+L+ G ++ Y
Sbjct: 286 ITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEY 345
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
AT GL + TALIDMYAKCGS+E + VF K+ WNAMI LA HG A
Sbjct: 346 ATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEA 405
Query: 290 LKLLGEMNDS--CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
L L M+D + +DITF+ LLSAC HAGLV EG LF M FG+ K+EHY CM
Sbjct: 406 LSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCM 465
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
VDLL RA L A ++IE MP +P LGAL SAC ++++IG+RV +M+ + + +
Sbjct: 466 VDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLL-ELDPSN 524
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G ++ + +Y + W++A R R +M + G+ KT G S IEV +FL+G
Sbjct: 525 SGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSG 577
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 142/349 (40%), Gaps = 47/349 (13%)
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
I IH ++ + + ++++LI ++ + A F ML TW+
Sbjct: 46 IHSIHKPNHLLSQSISLKDFTYSTLIFSHITPHPNDYA---FNIMLRATTTTWHD----- 97
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
Y + L+ +MK N+ P+ T V ACANL + H GL ++
Sbjct: 98 -----YPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDH 152
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-D 298
H +++ MY +CG + +VF + KD+ WN+++ G A G+ A+++ G + +
Sbjct: 153 HTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREE 212
Query: 299 SCVKADDITFIGLLSACSHAG-----------LVQEGCE-------------------LF 328
S + D+++ + +L AC G +V+ G + +
Sbjct: 213 SGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVS 272
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVI 385
SR D +R + + + + D AI L +M +P + L A+LSAC
Sbjct: 273 SRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACAS 332
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
L++G ++ + + ++YA CG E A R N M
Sbjct: 333 IGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM 381
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 264/449 (58%), Gaps = 2/449 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D++++P ++KA + G LHG + G +YV T+L+ MYG
Sbjct: 119 MKAHGALPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGE 178
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I DA KVF+ M ++++++W +ML + + G + A KL D MP ++V S+N M+ G+ ++
Sbjct: 179 IADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKM 238
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD +P K+VVS+ ++I Y AG+M A +F L K+V+ W+ +++GY+
Sbjct: 239 GDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYV 298
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL-ASNP 239
++ L + + +F EM+ NVKPD + S++SA A LG LE + Y + +
Sbjct: 299 QNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQD 358
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
H AL+DM AKCG++E++L++F + +DV + +MI GL++HG G A+ L M
Sbjct: 359 HVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLME 418
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ D++ F +L+ACS AGLV EG F M++ + ++ +HY CMVDLL R+ +
Sbjct: 419 GLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRD 478
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A ELI+ +P+EP GALL AC ++ D E+G+ VA + + L+ ++ +++YA
Sbjct: 479 AYELIKLIPWEPHAGAWGALLGACKLYGDSELGEIVANRLF-ELEPLNAANYVLLSDIYA 537
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+ +W + + R+ M + + K GSS I
Sbjct: 538 AAERWIDVSLVRSKMRERRVRKIPGSSKI 566
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 131/314 (41%), Gaps = 40/314 (12%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A+T + A +F ++L + + WNT++ + + L+ + F MKA PD T
Sbjct: 71 AHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFT 130
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
SV+ AC+ G +H A G+ + + T+LIDMY KCG I + +VF
Sbjct: 131 YPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMS 190
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMN---------------------------DS 299
++V W AM++G G A KL EM D+
Sbjct: 191 DRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDA 250
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ + ++F ++ + AG + LF D + + + + ++ + L ++
Sbjct: 251 MPEKNVVSFTTMIDGYAKAGDMAAARFLF-----DCSLEKDVVAWSALISGYVQNGLPNQ 305
Query: 360 AIEL---IEAMPFEPTESILGALLSACVIHQDLEIG---DRVAKMVCAKSNYLSDGELMM 413
A+ + +E M +P E IL +L+SA LE+ D +C + D +
Sbjct: 306 ALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICI--DLQQDHVIAA 363
Query: 414 FANLYASCGQWEEA 427
++ A CG E A
Sbjct: 364 LLDMNAKCGNMERA 377
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 170/473 (35%), Positives = 265/473 (56%), Gaps = 16/473 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ L + +N++FP + A L + + H + K G + +++ MY RC
Sbjct: 108 MKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMY--FRC 165
Query: 61 IDD--AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIM 113
++ A KVF+++ EKD+++WNS+L +A G A+++ + + D S +
Sbjct: 166 GENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSV 225
Query: 114 ISGYARIGKIHSARYIFDKVPAK--DVVSW--NSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ +G + R++ V + V S+ ++LI Y+ GE+ + +F M ++
Sbjct: 226 LGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDF 285
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
ITWN ++ Y ++ + E + LF MK V P+ +T+T+VLSACA++G+L+ G ++ Y
Sbjct: 286 ITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEY 345
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
AT GL + TALIDMYAKCGS+E + VF K+ WNAMI LA HG A
Sbjct: 346 ATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEA 405
Query: 290 LKLLGEMNDS--CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
L L M+D + +DITF+ LLSAC HAGLV EG LF M FG+ K+EHY CM
Sbjct: 406 LSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCM 465
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
VDLL RA L A ++IE MP +P LGAL SAC ++++IG+RV +M+ + + +
Sbjct: 466 VDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLL-ELDPSN 524
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G ++ + +Y + W++A R R +M + G+ KT G S IEV +FL+G
Sbjct: 525 SGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSG 577
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 142/349 (40%), Gaps = 47/349 (13%)
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
I IH ++ + + ++++LI ++ + A F ML TW+
Sbjct: 46 IHSIHKPNHLLSQSISLKDFTYSTLIFSHITPHPNDYA---FNIMLRATTTTWHD----- 97
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
Y + L+ +MK N+ P+ T V ACANL + H GL ++
Sbjct: 98 -----YPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDH 152
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-D 298
H +++ MY +CG + +VF + KD+ WN+++ G A G+ A+++ G + +
Sbjct: 153 HTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREE 212
Query: 299 SCVKADDITFIGLLSACSHAG-----------LVQEGCE-------------------LF 328
S + D+++ + +L AC G +V+ G + +
Sbjct: 213 SGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVS 272
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVI 385
SR D +R + + + + D AI L +M +P + L A+LSAC
Sbjct: 273 SRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACAS 332
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
L++G ++ + + ++YA CG E A R N M
Sbjct: 333 IGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM 381
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/468 (35%), Positives = 261/468 (55%), Gaps = 14/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D +F LL A +G +H + ++ G V T+L+ MY
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGD 198
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
I A +F+++PEK+++ W ++ +A GQ+D A++L++ M +V +F ++ G
Sbjct: 199 ISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQG 258
Query: 117 YARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
K+H RYI +++ NSLI Y G +E+A ++F + ++V+
Sbjct: 259 CTTPAALEHGKKVH--RYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVV 316
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TW MVTGY + + E ++LF M+ +KPD +T TSVL++C++ L+ G RIH
Sbjct: 317 TWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQL 376
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL-ALHGYGYAA 289
G + + +AL+ MYAKCGS++ + VF + ++V W A+I G A HG A
Sbjct: 377 VHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREA 436
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L+ +M +K D +TF +LSAC+H GLV+EG + F M D+G+ +EHY C VD
Sbjct: 437 LEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVD 496
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA L+ A +I +MPF P S+ GALLSAC +H D+E G+R A+ V K + DG
Sbjct: 497 LLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVL-KLDPDDDG 555
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+ +++YA+ G++E+A + R +M +VK G S IEV+G H F
Sbjct: 556 AYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVF 603
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 163/329 (49%), Gaps = 12/329 (3%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
F LL+ L S G +H +K+G + Y++ LL MY + DA +VF+ +
Sbjct: 50 FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIR 109
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYA-----RIG-K 122
+++I++W +M++AF + + A K + M L D +F +++ + ++G K
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+H I + + SL+ Y G++ KA +F ++ KNV+TW ++ GY +
Sbjct: 170 VHME--IVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
++L + M+ V P+ +T S+L C +LE G ++H Y +G
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVV 287
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
+LI MY KCG +E++ ++F +DV W AM+ G A G+ A+ L M +K
Sbjct: 288 NSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIK 347
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRM 331
D +TF +L++CS +QEG + ++
Sbjct: 348 PDKMTFTSVLTSCSSPAFLQEGKRIHQQL 376
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 150/437 (34%), Positives = 243/437 (55%), Gaps = 42/437 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V +L Y L +++A+K+F +MP+K+ I+W +M+ A G++ A L+D MP
Sbjct: 259 NVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMP 318
Query: 104 -------------------------------LKDVTSFNIMISGYARIGKIHSARYIFDK 132
++D +N MISGY G + A +F +
Sbjct: 319 FDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQ 378
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P KD+VSWN++I Y + G+M KA +F+KM +N ++WN++++G++++ L +E + F
Sbjct: 379 MPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHF 438
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
M+ + D+ T LSACA+L +L G + H +G + A ALI YAKC
Sbjct: 439 VLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKC 498
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G I ++ +VF + D+ WNA+I G A +G+G A+ + EM D+ V+ D++TF+G+L
Sbjct: 499 GRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVL 558
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
SACSHAGL+ EG + F+ M KD+ + EHY CMVDLLGR+ L A E+I+ M +P
Sbjct: 559 SACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPN 618
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVC-----AKSNYLSDGELMMFANLYASCGQWEEA 427
+ GA+L AC +H++ E+ A+ + SNY+ + +N+ A G+W+EA
Sbjct: 619 AGVWGAMLGACRVHKNHELAQLAAEKLYELEPHKTSNYV------LLSNITAEAGKWDEA 672
Query: 428 NRWRNMMNDTGIVKTAG 444
R + + G+ KT G
Sbjct: 673 QNMRVFIKERGVHKTPG 689
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 192/400 (48%), Gaps = 30/400 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y DDA + +MP DII+WNS+L G+M A+K D MP +D+
Sbjct: 140 NAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMV 199
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N+M+ GY R G + SA +F VP+ +VVSW +L+ Y AG + +A E+F ++ +N
Sbjct: 200 SWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRN 259
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V WN M++GYLR E LF EM N ++ T+++SA G L+ +
Sbjct: 260 VAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNS----ISWTTMISALVRGGKLQEAKDLLD 315
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ A A TAL+ Y + I+ + +F +V+D CWN MI G G
Sbjct: 316 KMPFDSFA----AKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDE 371
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-----LEH 343
A+ L +M + D +++ +++ +H G +++ +F +M + V+
Sbjct: 372 AMVLFQQMPNK----DMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQ 427
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
G V+ L L+ R + + S LSAC L +G + ++ A+S
Sbjct: 428 NGLCVEALQHFVLMRRDAKRAD-------WSTYACCLSACADLAALHVGRQFHSLL-ARS 479
Query: 404 NYLSD---GELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
Y+ D G ++ A YA CG+ EA + + M IV
Sbjct: 480 GYIGDSFAGNALISA--YAKCGRILEARQVFDEMPAPDIV 517
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 181/371 (48%), Gaps = 24/371 (6%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I DA ++F+++P ++ ++WN+M+ A + G++ A L D MP +D S+ +M+S YAR
Sbjct: 58 IADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARA 117
Query: 121 GKIHSARYIFDKVPA-KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G++ AR D++P K +N++I Y G + A + ++M ++I+WN+++ G
Sbjct: 118 GELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGL 177
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-N 238
R+ + V FDEM A D ++ +L G +++ A + G+ S N
Sbjct: 178 TRNGEMVRAVKFFDEMPA----RDMVSWNLMLEGYVRAGDVDSAAGLFA-----GVPSPN 228
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+ L++ Y + G I ++ E+F + ++V WN M+ G + A KL EM D
Sbjct: 229 VVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPD 288
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEHYGCMVDLLGRARLL 357
+ I++ ++SA G +QE +L +M D F L H ++ ARL+
Sbjct: 289 K----NSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLI 344
Query: 358 DRAIELIEAMPFEPTES---ILGALLSACVIHQDLEIGDRVA--KMVCAKSNYLSDGELM 412
+E+ +A+ + S G L A V+ Q + D V+ M+ + Y DG++
Sbjct: 345 FDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMI---AGYAHDGQMR 401
Query: 413 MFANLYASCGQ 423
++ Q
Sbjct: 402 KAVGIFRKMNQ 412
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 109/251 (43%), Gaps = 15/251 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ AD ++ L A L++ +G H ++G+ G + AL+ Y
Sbjct: 441 MRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGR 500
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
I +A +VF++MP DI++WN+++D +AS G A+ + M DV +F ++S
Sbjct: 501 ILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSA 560
Query: 117 YARIGKIHSARYIFDKVPAKDVV------SWNSLILAYTNAGEMEKAGEMFKKMLVK-NV 169
+ G I F+ + KD + ++ +G + +A E+ + M V+ N
Sbjct: 561 CSHAGLIDEGFDFFNSM-TKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNA 619
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA-CANLGSLETGARIHV 228
W M+ G R E+ L E K ++P + +LS A G + + V
Sbjct: 620 GVWGAML-GACRVHKNHELAQLAAE-KLYELEPHKTSNYVLLSNITAEAGKWDEAQNMRV 677
Query: 229 YATDNGLASNP 239
+ + G+ P
Sbjct: 678 FIKERGVHKTP 688
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 147/433 (33%), Positives = 249/433 (57%), Gaps = 32/433 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A ++F++MP++D++AW +ML + G++ A L D MP ++V S+ MISGYA+
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQN 218
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF------------------- 161
G+++ AR +F+ +P ++ VSW ++++ Y AG +E A E+F
Sbjct: 219 GEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFG 278
Query: 162 ------------KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
+KM ++ TW+ M+ Y +++ +E + F EM V+P+Y +V S
Sbjct: 279 QRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS 338
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+L+ CA L L+ G +H + A +ALI MY KCG+++++ VF+ + KD
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKD 398
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WN+MI G A HG G AL + +M + + D IT+IG L+ACS+ G V+EG E+F+
Sbjct: 399 IVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFN 458
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M + + EHY CMVDLLGR+ L++ A +LI+ MP EP I GAL+ AC +H++
Sbjct: 459 SMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNA 518
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
EI + AK + + + G ++ +++Y S G+WE+A++ R ++ + K+ G S IE
Sbjct: 519 EIAEFAAKKLL-ELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIE 577
Query: 450 VNGSYHKFLAGGI 462
+ H F +G +
Sbjct: 578 YDKRVHLFTSGDV 590
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 150/311 (48%), Gaps = 47/311 (15%)
Query: 29 GLMLHGQTIKTG--------FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80
GL L QT+ F V T+LL+ Y + DA ++F++MPE++ +++
Sbjct: 88 GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYT 147
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
+L G+++ A +L D MP +DV ++ M+SGY + G+I AR +FD++P ++VVS
Sbjct: 148 VLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS 207
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
W ++I Y GE+ A ++F+ M +N ++W M+ GY+++ + +LF+ M
Sbjct: 208 WTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAM----- 262
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P++ ++AC A++ + + G ++ +
Sbjct: 263 -PEH-----PVAAC----------------------------NAMMVGFGQRGMVDAAKT 288
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF K +D W+AMI + + AL EM V+ + + I +L+ C+ +
Sbjct: 289 VFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAV 348
Query: 321 VQEGCELFSRM 331
+ G E+ + M
Sbjct: 349 LDYGREVHAAM 359
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 132/304 (43%), Gaps = 45/304 (14%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS----- 115
I+ A FE MP + ++N++L + D A+ L MP +D+ S+N +IS
Sbjct: 33 IEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR 92
Query: 116 ----------------------------GYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
GY R G + A +F ++P ++ VS+ L+
Sbjct: 93 RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
+AG + +A +F +M ++V+ W M++GY ++ E LFDEM NV ++
Sbjct: 153 LLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSW 208
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
T+++S A G + ++ + N + TA++ Y + G +E + E+F
Sbjct: 209 TAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAMPE 264
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
V NAM++G G AA + +M C + DD T+ ++ A + E
Sbjct: 265 HPVAACNAMMVGFGQRGMVDAAKTVFEKM---CER-DDGTWSAMIKAYEQNEFLMEALST 320
Query: 328 FSRM 331
F M
Sbjct: 321 FREM 324
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 125/256 (48%), Gaps = 14/256 (5%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N+ + A G ++ A + MPL+ S+N +++GY R +A +F ++P++D+
Sbjct: 21 NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80
Query: 140 SWNSLI--LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
S+N+LI L+ + A + +V+++ +++ GY+R L + + LF +M
Sbjct: 81 SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
N +++ T +L + G + R+ D + A TA++ Y + G I +
Sbjct: 141 RN----HVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVV----AWTAMLSGYCQAGRITE 192
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +F + ++V W AMI G A +G A KL M + +++++ +L
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQ 248
Query: 318 AGLVQEGCELFSRMEK 333
AG V++ ELF+ M +
Sbjct: 249 AGHVEDAAELFNAMPE 264
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 111/249 (44%), Gaps = 19/249 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + S +L L+ G +H ++ F V+ +AL+ MY +D A
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKA 387
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM----ISGYARI 120
+VF KDI+ WNSM+ +A G + A+ + M L ++ I ++ +
Sbjct: 388 KRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT 447
Query: 121 GKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
GK+ R IF+ + + ++ ++ +G +E+A ++ K M V+ + + W
Sbjct: 448 GKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507
Query: 175 MVTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
++ G R E+ + E++ GN P Y+ ++ + ++ +G E +++ +
Sbjct: 508 LM-GACRMHRNAEIAEFAAKKLLELEPGNAGP-YVLLSHIYTS---VGRWEDASKMRKFI 562
Query: 231 TDNGLASNP 239
+ L +P
Sbjct: 563 SSRNLNKSP 571
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 150/388 (38%), Positives = 233/388 (60%), Gaps = 5/388 (1%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N+ + + S G++ A ++ D MP +D SFN MI GYA G + SA+ +F++V A V
Sbjct: 50 NAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPV 109
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+W S++ + AG++E A +F++M +++++WN M++G + ++L +E + LF M
Sbjct: 110 TWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEG 169
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
P+ TV SVLSAC G+LETG +HV+ L + TAL+DMYAKCG++E +L
Sbjct: 170 FVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELAL 229
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-DSCVKADDITFIGLLSACSHA 318
EVF + ++ WNAMI GLA++GY AL + +M + V D++TF+G+L ACSHA
Sbjct: 230 EVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHA 289
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
G V G E F + + +GV LEHY CMVDLL R+ L A +LI MP +P + A
Sbjct: 290 GFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRA 349
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
LL C +H+++ ++A+ V ++ G+ ++ +NLYA+ G+W R M G
Sbjct: 350 LLGGCRLHKNV----KMAENVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKG 405
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
I K G S +E++GS H+F++G H S
Sbjct: 406 IEKIPGCSSVEMDGSIHEFISGDKSHPS 433
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/472 (33%), Positives = 261/472 (55%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ G++ ++FPL+LKA S+ +G+ LH +K GF V T+LL +Y
Sbjct: 102 IRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
++DA KVFE++PE+ ++ W ++ + + G+ A+ K++++ D ++S
Sbjct: 162 LNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSA 221
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+G + S +I + K+ +L+ Y G+MEKA +F M K+++TW
Sbjct: 222 CVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTW 281
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+TM+ GY + E ++ F +M N+KPD ++ LS+CA+LG+L+ G
Sbjct: 282 STMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ +N ALIDMYAKCG++ + EVF + + KD+ NA I GLA +G+ + +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
G+ + D TF+GLL C HAGL+Q+G F+ + + + R +EHYGCMVDL G
Sbjct: 402 FGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWG 461
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA +LD A LI MP P + GALLS C + +D ++ + V K + A + + G +
Sbjct: 462 RAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPW-NAGNYV 520
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+Y+ G+W+EA R+MMN G+ K G S IE+ G+ H+FLA H
Sbjct: 521 QLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSH 572
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F N+ +NT++ G++ + L+ E +DLF ++ + T VL AC +
Sbjct: 67 LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+ G +H G + A T+L+ +Y+ G + + +VF + + V W A+ G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G A+ L +M + V+ D + +LSAC H G + G + ME+
Sbjct: 187 YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEE 240
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 154/435 (35%), Positives = 235/435 (54%), Gaps = 32/435 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I +A + F+ M +D+++WN+++ +A G++D A +L D P+ DV ++ M+SGY +
Sbjct: 230 IVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQN 289
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR +FD++P ++ VSWN+++ Y +E A E+F M +NV TWNTM+TGY
Sbjct: 290 RMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYA 349
Query: 181 RSQLYIEVVDLFDEMKAGNV-------------------------------KPDYLTVTS 209
+ E +LFD+M + + + + +S
Sbjct: 350 QCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSS 409
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
LS CA++ +LE G ++H G + AL+ MY KCGSIE++ ++F + KD
Sbjct: 410 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD 469
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WN MI G + HG+G AL+ M +K DD T + +LSACSH GLV +G + F
Sbjct: 470 IVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFH 529
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M +D+GV +HY CMVDLLGRA LL+ A L++ MPFEP +I G LL A +H +
Sbjct: 530 TMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 589
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E+ + A + A S G ++ +NLYAS G+W + + R M D G+ K G S IE
Sbjct: 590 ELAETAADKIFAMEPENS-GMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 648
Query: 450 VNGSYHKFLAGGIGH 464
+ H F G H
Sbjct: 649 IQNKTHTFSVGDEFH 663
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 146/287 (50%), Gaps = 12/287 (4%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
+L Y C+DDA +VF++MPEK+ ++WN++L A+ +++ A L +
Sbjct: 156 NTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALV 215
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N ++ G+ + KI AR FD + +DVVSWN++I Y GE+++A ++F + V +
Sbjct: 216 SWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHD 275
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW MV+GY+++++ E +LFD M N +S A L G R+ +
Sbjct: 276 VFTWTAMVSGYIQNRMVEEARELFDRMPERN----------EVSWNAMLAGYVQGERVEM 325
Query: 229 YAT--DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
D N +I YA+CG I ++ +F K +D W AMI G + G+
Sbjct: 326 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 385
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
Y AL+L M + + +F LS C+ ++ G +L R+ K
Sbjct: 386 YEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 432
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 29/309 (9%)
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
K K + DI WN + ++ G+ A+++ MP S+N MISGY R G+
Sbjct: 49 KPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFEL 108
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD++P +D+VSWN +I Y + KA E+F++M ++V +WNT+++GY ++
Sbjct: 109 ARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCV 168
Query: 186 IEVVDLFDEMKAGN------VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ +FD M N + Y+ + + AC GS E A +
Sbjct: 169 DDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALV------------- 215
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ L+ + K I ++ + F +V+DV WN +I G A +G A +L D
Sbjct: 216 -SWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF----DE 270
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
D T+ ++S +V+E ELF RM + V+ + M+ + ++
Sbjct: 271 SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVS-----WNAMLAGYVQGERVEM 325
Query: 360 AIELIEAMP 368
A EL + MP
Sbjct: 326 AKELFDVMP 334
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 12/254 (4%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C +V ++ Y I +A +F+KMP++D ++W +M+ ++ G A++L L
Sbjct: 335 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVL 394
Query: 102 MPLK----DVTSFNIMISGYA-----RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152
M + + +SF+ +S A +GK R + V N+L+L Y G
Sbjct: 395 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG-NALLLMYCKCG 453
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+E+A ++FK+M K++++WNTM+ GY R E + F+ MK +KPD T+ +VLS
Sbjct: 454 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLS 513
Query: 213 ACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DV 270
AC++ G ++ G + H D G+ N ++D+ + G +E++ + + D
Sbjct: 514 ACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDA 573
Query: 271 FCWNAMILGLALHG 284
W ++ +HG
Sbjct: 574 AIWGTLLGASRVHG 587
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 10/186 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G + SF L + + +G LHG+ +K G+ +V ALL MY
Sbjct: 395 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGS 454
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
I++A +F++M KDI++WN+M+ ++ G + A++ + M + D + ++S
Sbjct: 455 IEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSA 514
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + R F + V NS ++ AG +E+A + K M + +
Sbjct: 515 CSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAA 574
Query: 171 TWNTMV 176
W T++
Sbjct: 575 IWGTLL 580
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 144/399 (36%), Positives = 235/399 (58%), Gaps = 3/399 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A +VF MP KD+ +WN+M+ + G + A + +MP+++ S+N M++ A
Sbjct: 93 IDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACS 152
Query: 121 GKIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G + +A +F P K D + W +++ Y + G ++KA E F M V+N+++WN +V GY
Sbjct: 153 GDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGY 212
Query: 180 LRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+++ + + +F M + V+P+ T++SVL C+NL +L G ++H + L+ N
Sbjct: 213 VKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRN 272
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
T+L+ MY KCG + + +VF + KD+ WNAMI G A HG G A+KL +M D
Sbjct: 273 VTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKD 332
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
V D IT + +L+AC H GL G + F M++ + + +++HY CMVDLL RA LL+
Sbjct: 333 EGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLE 392
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
RA+ +I +MPFEP S G LL+AC ++++LE + A+ + + + + G + AN+Y
Sbjct: 393 RAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLI-EQDPQNAGAYVQLANIY 451
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
A +W + +R R M D +VKT G S +E+ G H+F
Sbjct: 452 AVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEF 490
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 118/227 (51%), Gaps = 14/227 (6%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMP 103
TA++ Y + A + F MP +++++WN+++ + + D A+++ D +
Sbjct: 175 TAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIV 234
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFD---KVP-AKDVVSWNSLILAYTNAGEMEKAGE 159
+ ++ + ++ G + + + R + K+P +++V SL+ Y G++ A +
Sbjct: 235 QPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACK 294
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F +M K+++ WN M++GY + ++ + LF++MK V PD++T+ +VL+AC + G
Sbjct: 295 VFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGL 354
Query: 220 LETGARIHVYAT-DNGLASNPHAT--TALIDMYAKCGSIEQSLEVFY 263
+ G I + T P + ++D+ + G +E+++ + +
Sbjct: 355 CDFG--IQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIH 399
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 127/305 (41%), Gaps = 27/305 (8%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD---LFDEMKAGNVK 201
+ A G++ A E F +K T+N ++ GY ++ I + D LFD +
Sbjct: 19 VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIP----H 74
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD ++ ++LS G ++ R+ + S ++ +K G+ E++ +
Sbjct: 75 PDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTS----WNTMVSGLSKNGASEEAAAM 130
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F V++ WNAM+ LA G AA L ++ K D I + ++S G V
Sbjct: 131 FRIMPVRNAVSWNAMVAALACSGDMGAAEDLF---RNAPEKTDAILWTAMVSGYMDTGNV 187
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP----FEPTESILG 377
Q+ E F M R L + +V + D A+ + + M +P S L
Sbjct: 188 QKAMEFFGAMP-----VRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLS 242
Query: 378 ALLSACVIHQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
++L C L G +V + M S ++ G ++ ++Y CG +A + + M+
Sbjct: 243 SVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLL--SMYCKCGDLNDACKVFDEMS 300
Query: 436 DTGIV 440
IV
Sbjct: 301 TKDIV 305
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 23 LSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSM 82
LS+ G +H +K +V V T+LL MY ++DA KVF++M KDI+AWN+M
Sbjct: 251 LSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAM 310
Query: 83 LDAFASCGQMDHAMKLIDLM 102
+ +A G A+KL + M
Sbjct: 311 ISGYAQHGGGMQAIKLFEKM 330
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 164/453 (36%), Positives = 259/453 (57%), Gaps = 34/453 (7%)
Query: 10 NYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFE 69
+S P +LKA G L + G +HGQ +KT H++
Sbjct: 109 EFSIPSVLKACGKLLAFDEGRQVHGQVLKT----HLWF---------------------- 142
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
D NSM+ + G+++ A ++ D MP +DV S+N MI+GY + G+I A +
Sbjct: 143 -----DPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASEL 197
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FD++P +D+VS N++I Y G E A ++F+ M K+V+TW +M++ Y++++ ++ +
Sbjct: 198 FDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKAL 257
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA-SNPHATTALIDM 248
DLF EM + ++PD + SVLSA A+LG +E G +H Y + N + S+ +ALIDM
Sbjct: 258 DLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDM 317
Query: 249 YAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
Y+KCG IE + VF S +++ WN+MI GLA+HG AL + EM ++ ++IT
Sbjct: 318 YSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEIT 377
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
F+GLLS CSH GLV+EG F M + + + +++HYGCM+DL GRA L+ A+ +I+ M
Sbjct: 378 FLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNM 437
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
PFE A+LSA + H +EIG + A + + ++ +N+YA G+W++
Sbjct: 438 PFEADLLAWKAILSASMKHGHIEIG-KSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDV 496
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ R MM G+ K AG S + VBG H+FL G
Sbjct: 497 AKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLXG 529
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 152/415 (36%), Positives = 241/415 (58%), Gaps = 16/415 (3%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I +A KVF+KMPE+++++W +M+ + G ++ A L MP ++V S+ +M+ G
Sbjct: 41 ISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIED 100
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG-- 178
G++ AR +FD +P KDVV+ ++I + G + +A E+F +M +NV+ W +M++G
Sbjct: 101 GRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEK 160
Query: 179 -----------YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
Y R +E + LF M+ V+P + +V SVLS C +L SL+ G ++H
Sbjct: 161 DDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVH 220
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ + + ++ LI MY KCG + + VF + KD+ WN++I G A HG+G
Sbjct: 221 SQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGE 280
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL++ +M S + D+ITFIG+LSACS+ G V+EG E+F M+ + V K EHY CM
Sbjct: 281 KALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACM 340
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYL 406
VDLLGRA L+ A+ LIE MP E + GALL AC H++L++ + A K++ + N
Sbjct: 341 VDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPN-- 398
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+ G ++ +NLY+S +W++ R M + K+ G S IEV+ H F GG
Sbjct: 399 NAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGG 453
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 21/231 (9%)
Query: 114 ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
++GY + + AR +FDK+P + +SWN L+ Y G + +A ++F KM +NV++W
Sbjct: 1 MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWT 60
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
M+ GY++ L E LF M NV ++ T +L G ++ ++ D
Sbjct: 61 AMIRGYVQEGLIEEAELLFWRMPERNV----VSWTVMLGGLIEDGRVDEARQLF----DM 112
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG-------------L 280
+ A+T +ID G + ++ E+F + ++V W +MI G
Sbjct: 113 MPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIY 172
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
G+ AL L M V+ + I +LS C + G ++ S++
Sbjct: 173 ERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQL 223
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 112/229 (48%), Gaps = 20/229 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV S +L G L+S G +H Q +++ F +YV + L+ MY ++C
Sbjct: 188 MQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMY--IKC 245
Query: 61 ID--DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMI 114
D A +VF++ KDI+ WNS++ +A G + A+++ M D +F ++
Sbjct: 246 GDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVL 305
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
S + GK+ IF+ + +K V + ++ AG++ +A + + M V+ +
Sbjct: 306 SACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEAD 365
Query: 169 VITWNTMVTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSA 213
I W ++ G R+ +++ ++ +++ N P Y+ ++++ S+
Sbjct: 366 AIVWGALL-GACRTHKNLDLAEIAAKKLLQLEPNNAGP-YILLSNLYSS 412
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 229/380 (60%), Gaps = 3/380 (0%)
Query: 86 FASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
+A G++D A D PL+DV N+M++ Y ++ AR +FD +P +D+VSWN++I
Sbjct: 2 YAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMI 61
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y GE+ A E+F ++ +W++M++ Y +S+ E ++L+ EM A ++ PD +
Sbjct: 62 HGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCI 121
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ SV+SAC++LG+L GA +H + N + + TALIDMYAKCG IE + VF +
Sbjct: 122 TLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRM 181
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
KDV W++MI+GLA HG G+ +L L +M +K + +TF+G+L AC+H GLV EG
Sbjct: 182 PEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGK 241
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
+ F M + G+ +EHYGCMVDLLGR+ ++ A +LI +M FEP I ALL AC I
Sbjct: 242 KYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRI 301
Query: 386 HQDLEIGDR-VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
H+++EI + +AK+ + L DG ++ +N+YA WE R + I + G
Sbjct: 302 HKNVEIAEEAMAKLRVL--DPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPG 359
Query: 445 SSVIEVNGSYHKFLAGGIGH 464
S IE + H+F++G H
Sbjct: 360 RSSIEWDEKIHEFVSGDRLH 379
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 41/280 (14%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V++ +L Y S + +A KVF+ MP +D+++WN+M+ +A G++ A ++ D
Sbjct: 23 VFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTED 82
Query: 105 KDVTSFNIMISGYARIGK----------IHSARYIFDKVPAKDVVSW------------- 141
+D S++ MIS YA+ + +H+A I D + VVS
Sbjct: 83 RDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEV 142
Query: 142 ----------------NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
+LI Y G++E A +F +M K+V TW++M+ G L
Sbjct: 143 HRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLG 202
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTA 244
E + LF +M + +KP+ +T VL AC ++G + G + + +G+
Sbjct: 203 HESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGC 262
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
++D+ + G +E++ ++ + D W A++ +H
Sbjct: 263 MVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIH 302
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 246/431 (57%), Gaps = 33/431 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
IDDA K+F+ +PEKD++ +M+ + G++D A +L D M +++V ++ M+SGYA+
Sbjct: 161 IDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKN 220
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI---------- 170
G++ AR +F+ +P ++ VSW ++++ YT +G M++A E+F+ M VK ++
Sbjct: 221 GRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFG 280
Query: 171 ---------------------TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
TWN M+ + R L +E + LF M+ V ++ ++ S
Sbjct: 281 LAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMIS 340
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
VLS CA+L SL+ G ++H + + + + LI MY KCG + ++ +F + KD
Sbjct: 341 VLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKD 400
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V WN+MI G + HG G AL + +M S V+ D++TFIG+LSACS++G V+EG E+F
Sbjct: 401 VVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFE 460
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M+ + V +EHY CMVDLLGRA +D A+EL+E MP EP + GALL AC H L
Sbjct: 461 AMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKL 520
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
++ + VA AK + G ++ +++YA+ G+W + R +N ++K G S IE
Sbjct: 521 DLAE-VAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRR-VIKFPGCSWIE 578
Query: 450 VNGSYHKFLAG 460
V H F G
Sbjct: 579 VEKKVHMFTGG 589
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 157/319 (49%), Gaps = 45/319 (14%)
Query: 49 TALLKMYGSLRCIDDAFKVFE--KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD 106
T+ + YG + I +A KVF+ +P++ I +WN+M+ A+ + A+ L D MP ++
Sbjct: 23 TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRN 82
Query: 107 VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
SFN MISGY + G + AR +FD +P ++VVSW S++ Y G +E+A ++F +M
Sbjct: 83 TVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPR 142
Query: 167 KNVITWNTMVTGYLRS-------QLY------------------------IEVVDLFDEM 195
+NV++W M+ G L+ +L+ E +LFDEM
Sbjct: 143 RNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEM 202
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
K NV T T+++S A G ++ ++ + N + TA++ Y + G +
Sbjct: 203 KVRNV----FTWTTMVSGYAKNGRVDVARKLFEVMPER----NEVSWTAMLMGYTQSGRM 254
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+++ E+F VK + N MIL L G + A + M + D+ T+ ++
Sbjct: 255 KEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKER----DEGTWNAMIKVF 310
Query: 316 SHAGLVQEGCELFSRMEKD 334
GL E LF+RM+++
Sbjct: 311 ERKGLDLEALGLFARMQRE 329
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 134/271 (49%), Gaps = 8/271 (2%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA KVF+ MPE+++++W SM+ + G ++ A KL MP ++V S+ +MI G +
Sbjct: 99 VADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKE 158
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+I A+ +FD +P KDVV ++I Y G +++A E+F +M V+NV TW TMV+GY
Sbjct: 159 SRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYA 218
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ LF+ M N ++ T++L G ++ + +
Sbjct: 219 KNGRVDVARKLFEVMPERN----EVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIV---- 270
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
A +I + G + ++ +F + +D WNAMI G AL L M
Sbjct: 271 ACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREG 330
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRM 331
V + + I +LS C+ + G ++ +R+
Sbjct: 331 VALNFPSMISVLSVCASLASLDHGRQVHARL 361
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV + S +L L+S G +H + +++ F +YV + L+ MY ++C
Sbjct: 326 MQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMY--VKC 383
Query: 61 ID--DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMI 114
D A +F + KD++ WNSM+ ++ G + A+ + M D +F ++
Sbjct: 384 GDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVL 443
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
S + GK+ IF+ + V + ++ AG +++A E+ +KM ++ +
Sbjct: 444 SACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPD 503
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
I W ++ G R+ + +++ ++ E K ++P
Sbjct: 504 AIVWGALL-GACRNHMKLDLAEVAVE-KLAKLEP 535
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 165/474 (34%), Positives = 254/474 (53%), Gaps = 47/474 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + DNY++P +LKA + + +GL +HG +K G ++Y+ L+ MYG
Sbjct: 128 MANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGK--- 184
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
C +D A +++D MP +D+ S+N M++GYA+
Sbjct: 185 ----------------------------CKWLDAARRVLDEMPGRDMVSWNSMVAGYAQN 216
Query: 121 GKIHSA----RYIFDKVPAKDVVSWNSLILAYTNAG--EMEKAGEMFKKMLVKNVITWNT 174
G+ + A R + D D + SL+ A TN + +MF K+ K++I+WN
Sbjct: 217 GRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNV 276
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ Y+ + + E VDL+ +M+ V+PD ++++SVL AC +L + G RIH Y
Sbjct: 277 MIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKK 336
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L N ALIDMYAKCG ++++ VF + +DV W +MI + G G A+ L
Sbjct: 337 LRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFK 396
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+M DS D I F+ +L+ACSHAGLV EG F+ M ++G+T +EHY CMVDLLGRA
Sbjct: 397 KMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRA 455
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI----GDRVAKMVCAKSNYLSDGE 410
+D A L MP EP E + G+LLSAC ++ + I D + ++ +S Y
Sbjct: 456 GKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGY----- 510
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA G+W++ R++MN GI K G+S +E+N + FLAG H
Sbjct: 511 YVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSH 564
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 148/320 (46%), Gaps = 28/320 (8%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ AY GE +F ++ KNV+ +N M+ Y+ + LY + + +F M PD
Sbjct: 77 LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T VL AC+ G+L G +IH GL N + L+ MY KC ++ + V
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLD 196
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA-----CSHA 318
+ +D+ WN+M+ G A +G ALKL EM D +K D T LL A C +
Sbjct: 197 EMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNV 256
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESI 375
V+ ++F ++++ + L + M+ + + + A++L M EP
Sbjct: 257 LYVK---DMFVKLKE-----KSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVS 308
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYASCGQWEEANR--- 429
+ ++L AC +G R+ + V K N L + L+ ++YA CG +EA
Sbjct: 309 ISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALI---DMYAKCGCLKEARAVFD 365
Query: 430 ---WRNMMNDTGIVKTAGSS 446
+R++++ T ++ G S
Sbjct: 366 QMMFRDVVSWTSMISAYGMS 385
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/328 (18%), Positives = 118/328 (35%), Gaps = 73/328 (22%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS- 140
++ A+A+CG+ + + D + K+V FN+MI Y G A +F + +
Sbjct: 77 LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136
Query: 141 -----------------W---------------------NSLILAYTNAGEMEKAGEMFK 162
W N L+ Y ++ A +
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLD 196
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+M +++++WN+MV GY ++ + + + L EM+ +KPD T+ S+L A N
Sbjct: 197 EMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTN------ 250
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
C ++ ++F K + K + WN MI
Sbjct: 251 ---------------------------TSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVN 283
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
+ A+ L +M V+ D ++ +L AC G + +E+ + L
Sbjct: 284 NAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERK-KLRPNLL 342
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFE 370
++D+ + L A + + M F
Sbjct: 343 LENALIDMYAKCGCLKEARAVFDQMMFR 370
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
D L NP L+ YA CG + +F + K+V +N MI +G AL
Sbjct: 64 DQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALL 123
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+ M + D+ T+ +L ACS +G + G ++ + K G+ L +V +
Sbjct: 124 VFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVK-LGLDMNLYIGNGLVSMY 182
Query: 352 GRARLLDRAIELIEAMP 368
G+ + LD A +++ MP
Sbjct: 183 GKCKWLDAARRVLDEMP 199
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 159/493 (32%), Positives = 269/493 (54%), Gaps = 43/493 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSS-SCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
M + +N ++P LLKA +S+ SC +H + +K GF ++V AL+ Y
Sbjct: 787 MYSQALFGNNLTYPFLLKACARISNVSCT--TVHARVLKLGFDSDLFVSNALIHGYAGFC 844
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF--------- 110
+ A KVF++M E+D+++WNS++ + C + + + + M + DV
Sbjct: 845 ELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVL 904
Query: 111 ------------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVS 140
N +I Y R + AR +FD++ +++VS
Sbjct: 905 ACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVS 964
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
WN++I+ Y AG + A ++F M ++VI+W +M++ Y ++ + + V LF EM V
Sbjct: 965 WNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKV 1024
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KPD +TV SVLSACA++G+L+ G +H Y + ++ + ALIDMY KCG++E+ L
Sbjct: 1025 KPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLS 1084
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF + +D W ++I GLA++G +AL L M V+ TF+G+L AC+HAG+
Sbjct: 1085 VFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGV 1144
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V +G E F ME+ +G+T +++HYGC+VDLL R+ L RA E I+ MP +P + LL
Sbjct: 1145 VDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILL 1204
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SA +H +L + + +A +++ + G ++ +N YA +WE+ + R +M ++ +
Sbjct: 1205 SASQVHGNLHLAE-IATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVH 1263
Query: 441 KTAGSSVIEVNGS 453
K + SS +E+N S
Sbjct: 1264 KPSASSSVEINDS 1276
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 11/236 (4%)
Query: 137 DVVSWNSLILAYT-NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
D +S +L+ +Y + + KA E+F+++ + WN M+ G+ ++ IE + ++ M
Sbjct: 728 DPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLM 787
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
+ + + LT +L ACA + ++ + +H G S+ + ALI YA +
Sbjct: 788 YSQALFGNNLTYPFLLKACARISNV-SCTTVHARVLKLGFDSDLFVSNALIHGYAGFCEL 846
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+ +VF + +D+ WN++I G L + EM + VK D +T + ++ AC
Sbjct: 847 GFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLAC 906
Query: 316 S---HAGLVQEGCELFSRMEKDFGVTRKLEHYG-CMVDLLGRARLLDRAIELIEAM 367
+ G+V E + + V + G ++D+ GR ++D A + + M
Sbjct: 907 TVLGEWGVVDAMIEYIEENKVEVDV-----YLGNTLIDMYGRRSMVDLARRVFDRM 957
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 161/472 (34%), Positives = 262/472 (55%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ G++ ++FPL+LKA SS +G+ LH +K GF V T+LL +Y
Sbjct: 102 IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---LKDVTSFNIMI-SG 116
++DA K+F+++P++ ++ W ++ + + G+ A+ L M +K + F + + S
Sbjct: 162 LNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+G + S +I + K+ +L+ Y G+MEKA +F M+ K+++TW
Sbjct: 222 CVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTW 281
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+TM+ GY + E ++LF +M N+KPD ++ LS+CA+LG+L+ G
Sbjct: 282 STMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ +N ALIDMYAKCG++ + EVF + + KD+ NA I GLA +G+ + +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
G+ + D TF+GLL C HAGL+Q+G F+ + + + R +EHYGCMVDL G
Sbjct: 402 FGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWG 461
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA +LD A LI MP P + GALLS C + +D ++ + V K + A + + G +
Sbjct: 462 RAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPW-NAGNYV 520
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+Y+ G+W+EA R+MMN G+ K G S IE+ G H+FLA H
Sbjct: 521 QLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSH 572
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F N+ +N+++ G++ + L+ E +DLF ++ + T VL AC S
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+ G +H G + A T+L+ +Y+ G + + ++F + + V W A+ G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G A+ L +M + VK D + +LSAC H G + G + ME+
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE 240
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 142/354 (40%), Positives = 218/354 (61%), Gaps = 1/354 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N+++ YA G+I AR +FDK+P +DV++WN +I G+ E A ++F +M +NV
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVR 211
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +M+ GY + E +DLF EM+ + P+ +TV +VL ACA++G+L G RIH ++
Sbjct: 212 SWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G N LIDMY KCG +E + +F + + V W+AMI GLA HG AL
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDAL 331
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M ++ VK + +TFIG+L ACSH G+V++G + F+ M +D+G+ ++EHYGCMVDL
Sbjct: 332 ALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDL 391
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
RA LL A E I MP P + GALL C +H+++++ + + + +K + L+DG
Sbjct: 392 FSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHL-SKLDPLNDGY 450
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA G+WE+ R R +M D G+ KT G S I V G + F+AG H
Sbjct: 451 YVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTH 504
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 171/383 (44%), Gaps = 49/383 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E + D+Y+ +LKA L G ++HG K G ++++Q ++ +Y
Sbjct: 104 LREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGE 163
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A KVF+KMP++D+I WN M+ G + A KL MP ++V S+ MI GYA+
Sbjct: 164 IGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQC 223
Query: 121 GKIHSARYIFDKVP---------------------------------------AKDVVSW 141
GK A +F ++ K++
Sbjct: 224 GKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVC 283
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y G +E A +F M + V++W+ M+ G + + LF++M VK
Sbjct: 284 NTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVK 343
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYAT-DNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T +L AC+++G +E G + T D G+ ++D++++ G ++++ E
Sbjct: 344 PNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHE 403
Query: 261 VFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT---FIGLLSACS 316
+ + W A++ G +H +KL E K D + ++ L + +
Sbjct: 404 FIMNMPIAPNGVVWGALLGGCKVH----KNIKLAEEATRHLSKLDPLNDGYYVVLSNIYA 459
Query: 317 HAGLVQEGCELFSRMEKDFGVTR 339
AG ++ + ++ +D GV +
Sbjct: 460 EAGRWEDVARV-RKLMRDRGVKK 481
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 117/282 (41%), Gaps = 39/282 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F+ + V WNT + + + + LF ++ ++ PD+ T + VL AC+ L
Sbjct: 69 IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+ G +H Y GL SN ++ +YA CG I + +VF K +DV WN MI
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
L G A KL EM + V+ ++ ++ + G +E +LF ME D G+
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVR----SWTSMIGGYAQCGKSKEAIDLFLEME-DAGLL- 242
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
P E + A+L AC +L +G R+
Sbjct: 243 -------------------------------PNEVTVVAVLVACADMGNLVLGRRIHDF- 270
Query: 400 CAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMNDTGIV 440
+S Y + + ++Y CG E+A R + M + +V
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVV 312
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 213/357 (59%), Gaps = 1/357 (0%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ D+ +I Y+ G + AR +FD V +DV WN+++ Y G+++ A +F++
Sbjct: 171 VSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFER 230
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +NVI+W ++ GY + E + +F M+ V+PD + + + LSACA+LG+LE G
Sbjct: 231 MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG 290
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
IH Y +GL+ ALIDMYAKCG IE++LEVF + K V W +MI GLALH
Sbjct: 291 EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALH 350
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G G AL++ M + +K ++ITF+ +LSAC H GLV+ G F M +G+ K++H
Sbjct: 351 GLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQH 410
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
YGCM+DLLGRA L A EL+ MPFE I G+LL+A IH D E+G + + + K
Sbjct: 411 YGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHL-IKV 469
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ G + +N+YA+ +W EA R +M DTG+ K G S IEVN H+F+AG
Sbjct: 470 EPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAG 526
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 157/317 (49%), Gaps = 41/317 (12%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D YS P +LKA L + +G +H Q I TG ++V TAL++MY S C+ +A ++F
Sbjct: 138 DTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLF 197
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ + +D+ WN+M+ +A G +D+A L + MP ++V S+ +I+GYA++ + + A
Sbjct: 198 DGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAIT 257
Query: 129 IFDKVPAKDVVS----------------------W-----------------NSLILAYT 149
+F ++ ++V W N+LI Y
Sbjct: 258 MFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYA 317
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G++EKA E+FK M K+VITW +M+ G L E +++F M+ +KP+ +T +
Sbjct: 318 KCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVA 377
Query: 210 VLSACANLGSLETGA-RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
+LSAC ++G +E G T G+ +ID+ + G ++++ E+ +
Sbjct: 378 ILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFE 437
Query: 269 -DVFCWNAMILGLALHG 284
+ W +++ +HG
Sbjct: 438 ANAPIWGSLLAAARIHG 454
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 147/328 (44%), Gaps = 44/328 (13%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+D + + I A ++ G + +F ++ +NT++ +L E + L++ +
Sbjct: 71 QDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRI 130
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
A +++ D ++ VL A L ++ G +IH A GL S+ H TALI MY+ CG +
Sbjct: 131 LASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCV 190
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHG------------------------YGYA--- 288
++ ++F +DV WNAM+ G A G GYA
Sbjct: 191 SEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMD 250
Query: 289 ----ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
A+ + M V+ D+I + LSAC+H G ++ G + + ++K G+++ +
Sbjct: 251 RPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKH-GLSKIVPLN 309
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV-CAKS 403
++D+ + +++A+E+ + M + + +++ +H +G +M C +
Sbjct: 310 NALIDMYAKCGKIEKALEVFKNMEHKSVIT-WTSMIDGLALHG---LGREALEMFSCMER 365
Query: 404 NYLSDGELMMFANLYASC-------GQW 424
N + E+ A L A C G+W
Sbjct: 366 NRIKPNEITFVAILSACCHVGLVEMGRW 393
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + L A L + +G +H K G V + AL+ MY
Sbjct: 262 MQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGK 321
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
I+ A +VF+ M K +I W SM+D A G A+++ M + +F ++S
Sbjct: 322 IEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSA 381
Query: 117 YARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+G + R+ F + K + + +I AG +++A E+ + M + N
Sbjct: 382 CCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAP 441
Query: 171 TWNTMVTG 178
W +++
Sbjct: 442 IWGSLLAA 449
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 213/357 (59%), Gaps = 1/357 (0%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ D+ +I Y+ G + AR +FD V +DV WN+++ Y G+++ A +F++
Sbjct: 171 VSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFER 230
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +NVI+W ++ GY + E + +F M+ V+PD + + + LSACA+LG+LE G
Sbjct: 231 MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG 290
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
IH Y +GL+ ALIDMYAKCG IE++LEVF + K V W +MI GLALH
Sbjct: 291 EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALH 350
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G G AL++ M + +K ++ITF+ +LSAC H GLV+ G F M +G+ K++H
Sbjct: 351 GLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQH 410
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
YGCM+DLLGRA L A EL+ MPFE I G+LL+A IH D E+G + + + K
Sbjct: 411 YGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHL-IKV 469
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ G + +N+YA+ +W EA R +M DTG+ K G S IEVN H+F+AG
Sbjct: 470 EPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAG 526
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 157/317 (49%), Gaps = 41/317 (12%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D YS P +LKA L + +G +H Q I TG ++V TAL++MY S C+ +A ++F
Sbjct: 138 DTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLF 197
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ + +D+ WN+M+ +A G +D+A L + MP ++V S+ +I+GYA++ + + A
Sbjct: 198 DGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAIT 257
Query: 129 IFDKVPAKDVVS----------------------W-----------------NSLILAYT 149
+F ++ ++V W N+LI Y
Sbjct: 258 MFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYA 317
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G++EKA E+FK M K+VITW +M+ G L E +++F M+ +KP+ +T +
Sbjct: 318 KCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVA 377
Query: 210 VLSACANLGSLETGA-RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
+LSAC ++G +E G T G+ +ID+ + G ++++ E+ +
Sbjct: 378 ILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFE 437
Query: 269 -DVFCWNAMILGLALHG 284
+ W +++ +HG
Sbjct: 438 ANAPIWGSLLAAARIHG 454
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 147/328 (44%), Gaps = 44/328 (13%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+D + + I A ++ G + +F ++ +NT++ +L E + L++ +
Sbjct: 71 QDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRI 130
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
A +++ D ++ VL A L ++ G +IH A GL S+ H TALI MY+ CG +
Sbjct: 131 LASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCV 190
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHG------------------------YGYA--- 288
++ ++F +DV WNAM+ G A G GYA
Sbjct: 191 SEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMD 250
Query: 289 ----ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
A+ + M V+ D+I + LSAC+H G ++ G + + ++K G+++ +
Sbjct: 251 RPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKH-GLSKIVPLN 309
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV-CAKS 403
++D+ + +++A+E+ + M + + +++ +H +G +M C +
Sbjct: 310 NALIDMYAKCGKIEKALEVFKNMEHKSVIT-WTSMIDGLALHG---LGREALEMFSCMER 365
Query: 404 NYLSDGELMMFANLYASC-------GQW 424
N + E+ A L A C G+W
Sbjct: 366 NRIKPNEITFVAILSACCHVGLVEMGRW 393
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + L A L + +G +H K G V + AL+ MY
Sbjct: 262 MQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGK 321
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
I+ A +VF+ M K +I W SM+D A G A+++ M + +F ++S
Sbjct: 322 IEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSA 381
Query: 117 YARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+G + R+ F + K + + +I AG +++A E+ + M + N
Sbjct: 382 CCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAP 441
Query: 171 TWNTMVTG 178
W +++
Sbjct: 442 IWGSLLAA 449
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 161/468 (34%), Positives = 249/468 (53%), Gaps = 30/468 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ D + +L + +G +H IK+ F + LL MY
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGD 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A +VFEKM E+++++W SM+ + G+ D A+KL+ M + DV + ++
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHA 361
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
AR G + + + + D + A ++ S N+L+ Y G ME A +F M+VK++I+W
Sbjct: 362 CARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISW 421
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTM+ G +KPD T+ VL ACA+L +LE G IH Y
Sbjct: 422 NTMI---------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILR 460
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NG +S+ H AL+D+Y KCG + + +F KD+ W MI G +HGYG A+
Sbjct: 461 NGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 520
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM D+ ++ D+++FI +L ACSH+GL+++G F M+ DF + KLEHY CMVDLL
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R L +A E +E +P P +I GALL C + D+E+ ++VA+ V + + G +
Sbjct: 581 RTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERV-FELEPENTGYYV 639
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ AN+YA +WEE R R + G+ K G S IE+ G + F++G
Sbjct: 640 LLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSG 687
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 37/360 (10%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
++ +A+CG + ++ D M K+V +N M+S YA+IG + +F + K +
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI--- 196
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
E A E+F K+ ++VI+WN+M++GY+ + L + ++ +M +
Sbjct: 197 --------EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D T+ SVL CAN G+L G +H A + + + L+DMY+KCG ++ +L V
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K ++V W +MI G G A+KLL +M VK D + +L AC+ +G +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSL 368
Query: 322 QEGCELF-----SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--------- 367
G ++ + ME + V L +D+ + ++ A + M
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNAL------MDMYAKCGSMEAANSVFSTMVVKDIISWN 422
Query: 368 ----PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCG 422
+P + +L AC LE G + + ++ Y SD + +LY CG
Sbjct: 423 TMIGELKPDSRTMACVLPACASLSALERGKEIHGYI-LRNGYSSDRHVANALVDLYVKCG 481
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 154/311 (49%), Gaps = 38/311 (12%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMI-- 114
+ AF++F+K+ ++D+I+WNSM+ + S G + + + M + T ++++
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261
Query: 115 --SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
SG +GK + I + S N+L+ Y+ G+++ A +F+KM +NV++W
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFS-NTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+M+ GY R + L +M+ VK D + +TS+L ACA GSL+ G +H Y
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N + SN AL+DMYAKCGS+E + VF VKD+ WN MI
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI--------------- 425
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL-- 350
GE+ K D T +L AC+ ++ G E+ + ++ G + +VDL
Sbjct: 426 -GEL-----KPDSRTMACVLPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYV 478
Query: 351 ----LGRARLL 357
LG ARLL
Sbjct: 479 KCGVLGLARLL 489
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T SVL CA L S G ++H N + + L+ YA CG +++ VF
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTM 160
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLG----------------EMNDSCVKADDITFI 309
+ K+V+ WN M+ A G ++ L E+ D D I++
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220
Query: 310 GLLSACSHAGLVQEGCELFSRM 331
++S GL + G ++ +M
Sbjct: 221 SMISGYVSNGLTERGLGIYKQM 242
>gi|334186821|ref|NP_194007.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635615|sp|P0C8Q5.1|PP336_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g22760
gi|332659255|gb|AEE84655.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 578
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 168/488 (34%), Positives = 269/488 (55%), Gaps = 37/488 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ +++ +L+A G + + G +H Q +K G CG VYVQT L+ +Y L
Sbjct: 95 MHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGY 154
Query: 61 I-------------------------------DDAFKVFEKMPEKDIIAWNSMLDAFASC 89
I D+A +VF+K+PEKD ++WN ++ ++A
Sbjct: 155 IELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISSYAKK 214
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
G M +A L MPLK S+NI+I GY ++ AR FD +P K+ VSW ++I YT
Sbjct: 215 GDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYT 274
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN--VKPDYLTV 207
G+++ A E+F+ M K+ + ++ M+ Y ++ + + LF +M N ++PD +T+
Sbjct: 275 KLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITL 334
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+SV+SA + LG+ G + Y T++G+ + +T+LID+Y K G ++ ++F
Sbjct: 335 SSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNK 394
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
KD ++AMI+G ++G A L M + + + +TF GLLSA SH+GLVQEG +
Sbjct: 395 KDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKC 454
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F+ M KD + +HYG MVD+LGRA L+ A ELI++MP +P + GALL A +H
Sbjct: 455 FNSM-KDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHN 513
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++E G+ +A C K G L A +Y+S G+W++A R+ + + + KT G S
Sbjct: 514 NVEFGE-IACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDSIKEKKLCKTLGCSW 572
Query: 448 IEVNGSYH 455
+E GSYH
Sbjct: 573 VE--GSYH 578
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+W +V + + + E VD++ +M + P VTSVL AC + ++ G IH
Sbjct: 70 FSWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQ 129
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY-GYA 288
A NGL + T L+ +Y++ G IE + + F K+ WN++ LHGY
Sbjct: 130 ALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSL-----LHGYLESG 184
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
L + D + D +++ ++S+ + G + C LFS M
Sbjct: 185 ELDEARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAM 227
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 159/477 (33%), Positives = 255/477 (53%), Gaps = 43/477 (9%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +H ++ G H + L + Y SL + + +F + P ++ W +++A A
Sbjct: 40 LQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHF 99
Query: 90 GQMDHAM----------------------KLIDLMPLKDVTSFNI-------------MI 114
HA+ K L P + V S I ++
Sbjct: 100 DLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLV 159
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
YAR G + SA+ +FD +P + +VS+ +++ Y G + +A +F+ M +K+V+ WN
Sbjct: 160 DAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNV 219
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAG-------NVKPDYLTVTSVLSACANLGSLETGARIH 227
M+ GY + E + F +M V+P+ +TV +VLS+C +G+LE G +H
Sbjct: 220 MIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVH 279
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
Y +NG+ N TAL+DMY KCGS+E + +VF + KDV WN+MI+G +HG+
Sbjct: 280 SYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSD 339
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL+L EM VK DITF+ +L+AC+HAGLV +G E+F M+ +G+ K+EHYGCM
Sbjct: 340 EALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCM 399
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
V+LLGRA + A +L+ +M EP + G LL AC IH ++ +G+ +A+++ + + S
Sbjct: 400 VNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVS-NGLAS 458
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ +N+YA+ W + R+MM +G+ K G S IEV H+F+AG H
Sbjct: 459 SGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRH 515
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 38/241 (15%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L + G + + G +H G +V V TAL+ MY ++DA KVF+ M KD
Sbjct: 262 VLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKD 321
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA 135
++AWNSM+ + G D A++L M V +I
Sbjct: 322 VVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDI----------------------- 358
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTMVTGYLRSQLYIEVVD 190
++ +++ A +AG + K E+F M + V + MV R+ E D
Sbjct: 359 ----TFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYD 414
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI-DMY 249
L M+ V+PD + ++L AC ++ G I NGLAS+ T L+ +MY
Sbjct: 415 LVRSME---VEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASS--GTYVLLSNMY 469
Query: 250 A 250
A
Sbjct: 470 A 470
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/355 (41%), Positives = 219/355 (61%), Gaps = 5/355 (1%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM--LVKNVI 170
+I Y+ G + AR +FD++ +DV WN+L+ Y GEM++A + + M V+N +
Sbjct: 157 LIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAV 216
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +++GY RS E +++F M NV PD +T+ +VLSACA+LGSLE G RI Y
Sbjct: 217 SWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYV 276
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G+ A+IDMYAK G+I ++LEVF ++V W +I GLA HG+G AL
Sbjct: 277 DHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEAL 336
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ M + VK +D+TFI +LSACSH G V G F+ M +G+ +EHYGCM+DL
Sbjct: 337 VMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDL 396
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR-VAKMVCAKSNYLSDG 409
LGRA L A E+I++MPFE +I G+LL+A +H D+++G+R + +++ + N + G
Sbjct: 397 LGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPN--NSG 454
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M+ ANLY++ G+W+E+ R MM G+ K AG S IEV +KF++G + H
Sbjct: 455 NYMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAGESSIEVENRVYKFISGDLSH 509
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 149/295 (50%), Gaps = 42/295 (14%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D ++FP +LK +S G +HGQ + GF V+V T L++MY S + DA KVF
Sbjct: 115 DTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVF 174
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYARIGKIHSA 126
++M +D+ WN++L + G+MD A L+++MP +++ S+ +ISGYAR G+ A
Sbjct: 175 DEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEA 234
Query: 127 RYIFDKVPAKDV--------------------------------------VSWNSLIL-A 147
+F ++ ++V VS N+ ++
Sbjct: 235 IEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDM 294
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y +G + KA E+F+ + +NV+TW T++TG E + +FD M VKP+ +T
Sbjct: 295 YAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTF 354
Query: 208 TSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
++LSAC+++G ++ G R + + G+ N +ID+ + G + ++ EV
Sbjct: 355 IAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEV 409
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 134/325 (41%), Gaps = 66/325 (20%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+D ++ I A +NAG + A +F N NTM I + L DE
Sbjct: 45 RDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTM----------IRALSLVDER 94
Query: 196 KAGNV-------------KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
A ++ KPD T VL + + G ++H A G S+ H
Sbjct: 95 NAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVV 154
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
T LI MY+ CG + + +VF + +V+DV WNA++ G G A LL M C
Sbjct: 155 TGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMM--PCWV 212
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
+ +++ ++S + +G E E+F RM
Sbjct: 213 RNAVSWTCVISGYARSGRASEAIEVFQRM------------------------------- 241
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV----CAKSNYLSDGELMMFA--- 415
L+E + +P E L A+LSAC LE+G+R+ V ++ L++ + M+A
Sbjct: 242 LMENV--DPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSG 299
Query: 416 NLYASCGQWEEANRWRNMMNDTGIV 440
N+ + +E N RN++ T I+
Sbjct: 300 NITKALEVFESVNE-RNVVTWTTII 323
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 12/182 (6%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D + +L A L S +G + G V + A++ MY I A
Sbjct: 246 VDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKAL 305
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYARI 120
+VFE + E++++ W +++ A+ G A+ + D M DVT F ++S + +
Sbjct: 306 EVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVT-FIAILSACSHV 364
Query: 121 GKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
G + F+ + +K ++ + +I AG++ +A E+ K M + N W +
Sbjct: 365 GWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGS 424
Query: 175 MV 176
++
Sbjct: 425 LL 426
>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 553
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 235/404 (58%), Gaps = 1/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+DDA+ +F +MP+++++++ +M+D A G++ A ++ D MP +++ S+ MI+GY
Sbjct: 117 MDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVEN 176
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
AR +F+ +P K+VV+ ++I Y G++E A +F + VK+VI+WN M+TGY+
Sbjct: 177 AMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYV 236
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ E + L M VKPD+ T+ ++L+AC+ L L G H AT L S+
Sbjct: 237 HNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTS 296
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
AL+ MY+KCG++ +S VF +++D+ WN +I A HG A+ L EM
Sbjct: 297 FCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRG 356
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ +DIT + +LSAC H G V + ELF M + ++ EHY C+VD+LGRA L++A
Sbjct: 357 LIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKA 416
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
I+ MPFE ++ GALL A H ++++G+ AKM+ +S+ +S G +M +N+YA+
Sbjct: 417 CSYIKKMPFEAERNVWGALLGASKTHGNVQLGELAAKMLV-QSDSVSSGPYVMLSNIYAA 475
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G W E NR R M + G+ K G S E+ + F+ G H
Sbjct: 476 AGMWGEVNRVRGQMKEKGVKKQPGYSWTEIANKVNMFVGGDASH 519
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 9/262 (3%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQ-MDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
A +VF+ MP +D+++WN++L A G+ + A +L D MP ++V S+N +++G G
Sbjct: 26 ARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGCLAHGD 85
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ +A F + P ++V SWN+++ G M+ A +F +M +NV+++ TMV G R
Sbjct: 86 LDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMPQRNVVSYTTMVDGLARR 145
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
++FD M N+ ++ ++++ + ++ D N A
Sbjct: 146 GEVARAREVFDAMPERNL----VSWAAMITGYVENAMFDEARKLFEAMPDK----NVVAC 197
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
TA+I Y K G +E + +F VKDV WNAMI G +G+G A+KL M VK
Sbjct: 198 TAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVK 257
Query: 303 ADDITFIGLLSACSHAGLVQEG 324
D T I +L+ACS L+++G
Sbjct: 258 PDHATLIAILTACSALALLRQG 279
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 159/338 (47%), Gaps = 55/338 (16%)
Query: 50 ALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS 109
A++ Y D+A K+FE MP+K+++A +M+ + G ++ A +L D +P+KDV S
Sbjct: 168 AMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVIS 227
Query: 110 FNIMISGYARIG------KIH--------------------------------SARYIFD 131
+N MI+GY G K+H S +
Sbjct: 228 WNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVAT 287
Query: 132 KVPAKDVVSW-NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
K + S+ N+L+ Y+ G + ++ +F + ++++++WNT++ Y + Y + +
Sbjct: 288 KTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIA 347
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMY 249
LF EM+ + P+ +T+ S+LSAC ++G + + + ++ ++ + ++D+
Sbjct: 348 LFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDIL 407
Query: 250 AKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG---YGYAALKLLGEMNDSCVKADD 305
+ G +E++ K + + W A++ HG G A K+L V++D
Sbjct: 408 GRAGQLEKACSYIKKMPFEAERNVWGALLGASKTHGNVQLGELAAKML-------VQSDS 460
Query: 306 IT---FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
++ ++ L + + AG+ E + +M K+ GV ++
Sbjct: 461 VSSGPYVMLSNIYAAAGMWGEVNRVRGQM-KEKGVKKQ 497
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D+ + +L A L+ G H KT AL+ MY + ++
Sbjct: 255 GVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGES 314
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYARI 120
VF + +DI++WN+++ A+A G+ A+ L M + + +I M+S +
Sbjct: 315 ELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHV 374
Query: 121 GKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKM 164
G+++ + +FD + +K +S + ++ AG++EKA KKM
Sbjct: 375 GRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIKKM 423
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 170/499 (34%), Positives = 266/499 (53%), Gaps = 53/499 (10%)
Query: 12 SFPLLLKAAGILSSSCIGL-----MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
+ P LL++A + C G H ++TG +V TAL Y + C+ D K
Sbjct: 151 ALPALLRSA----ARCEGAGAYVAATHALAVRTGALDDGFVGTALAGAYAACGCVRDTRK 206
Query: 67 VFEKMPEKDIIAWNSMLDAF--------------------------------ASCGQMDH 94
VF+ M +D+++W MLD++ +CG + H
Sbjct: 207 VFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRH 266
Query: 95 A---------MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
M + D++ ++S +IS YA + A +++++P KD+VS +++
Sbjct: 267 LRIGKAIHSYMLVSDMIIGAHISS--ALISLYASCANMEMAEKLYNEMPRKDLVSSTAMV 324
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y ++E A +F M K+V++W+ M++GY+ S E + LF+ M+ ++ D +
Sbjct: 325 SGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEI 384
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ SV+SACANLGSL+ IH + ++GL H ALIDM+AKCG I +L VF +
Sbjct: 385 TMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEM 444
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+K+V W +MI A+HG G ++L+L +M D + +++TF+ LL AC HAGLV EG
Sbjct: 445 PLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGR 504
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
LFS M + +G+ K EHYGCMVDLLGRA+L+ A+ LIE+M EP I G+LL+AC +
Sbjct: 505 LLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWM 564
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
H DL++G AK + + + DG ++ +Y A R +M + K G
Sbjct: 565 HGDLKLGAFAAKKIL-QLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHRVSKETGL 623
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S +E+N +H+F AGG H
Sbjct: 624 SWMELNEPFHEFAAGGEKH 642
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 151/338 (44%), Gaps = 45/338 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D +L A G + IG +H + + ++ +AL+ +Y S
Sbjct: 242 MKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCAN 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A K++ +MP KD+++ +M+ +A +++ A + D MP KDV S++ MISGY
Sbjct: 302 MEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDS 361
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAG------------------ 158
+ + A +F+ + D ++ S+I A N G ++KA
Sbjct: 362 NQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHIC 421
Query: 159 -----------------EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+F +M +KNVITW +M++ + + LF++MK +
Sbjct: 422 NALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAE 481
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T S+L AC + G + G + G+ ++D+ + +++++
Sbjct: 482 PNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVS 541
Query: 261 VFYKSQVK-DVFCWNAMILGLALHG----YGYAALKLL 293
+ ++ +V W +++ +HG +AA K+L
Sbjct: 542 LIESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKIL 579
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/457 (34%), Positives = 261/457 (57%), Gaps = 17/457 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D ++FP + KA G S G +HG K GF +YVQ +L+ YG +A
Sbjct: 101 GFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNA 160
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKI 123
KVF++MP +D+++W ++ F G A+ M ++ ++ ++ + R+G +
Sbjct: 161 CKVFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVEPNLATYVCALVSSGRVGCL 220
Query: 124 HSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ I + + + N+LI Y ++ A +F ++ K+ ++WN+M++G
Sbjct: 221 SLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGL 280
Query: 180 LRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+ + E ++LF M+ + +KPD +TSVLSACA+LG+++ G +H Y G+ +
Sbjct: 281 VHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKWD 340
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
H TA++DMYAKCG IE +L++F + K+VF WNA++ GLA+HG+G+ +L+ EM
Sbjct: 341 THIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNALLGGLAIHGHGHESLRYFEEMVK 400
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRME-KDFGVTRKLEHYGCMVDLLGRARLL 357
K + +TF+ +L+AC H GLV EG F +M+ +++ ++ KLEHYGC++DL RA LL
Sbjct: 401 LGFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREYNLSPKLEHYGCLIDLFCRAGLL 460
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDL-----EIGDRVAKMVCAKSNYLSDGELM 412
D A+ELI+AMP +P I GA+LSAC L EI D +M + G +
Sbjct: 461 DEALELIKAMPVKPDVRICGAVLSACKSRGTLMELPKEILDSFLEM-----EFEDSGVYV 515
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+ +N++A+ +W++ +R R +M GI K GSS IE
Sbjct: 516 LLSNIFAANRRWDDVSRIRRLMKVKGISKVPGSSSIE 552
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 132/280 (47%), Gaps = 13/280 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ V + ++ L ++G + +G +HG +K + AL+ MY
Sbjct: 195 FSKMDVEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQ 254
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-----KDVTSFNIMIS 115
+ DA VF ++ +KD ++WNSM+ C + + A++L +M D ++S
Sbjct: 255 LSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLS 314
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVKNVI 170
A +G + R++ + V + + W++ ++ Y G +E A ++F + KNV
Sbjct: 315 ACASLGAVDYGRWVHEYVLSAG-IKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVF 373
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVY 229
TWN ++ G E + F+EM KP+ +T ++L+AC + G ++ G R H
Sbjct: 374 TWNALLGGLAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHKM 433
Query: 230 AT-DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
T + L+ LID++ + G ++++LE+ VK
Sbjct: 434 KTREYNLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVK 473
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/447 (35%), Positives = 241/447 (53%), Gaps = 46/447 (10%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--------------- 105
I A K+F+ +P+ + +N ++ A++S G L M L+
Sbjct: 32 IPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSA 91
Query: 106 ------------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
DV + ++ YA++G + AR FD++ +DV +W
Sbjct: 92 CASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTW 151
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNV 200
NS+I Y G++E A E+F+ M +NV +W M++GY ++ Y + + +F M+ +
Sbjct: 152 NSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEM 211
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+P+ +T+ SVL ACANLG+LE G RI VYA NG N + + AL++MYA+CG I+++
Sbjct: 212 RPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWG 271
Query: 261 VFYKSQVKDVFC-WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
VF + + C WN+MI+GLA+HG A++L +M DD+TF+G+L AC+H G
Sbjct: 272 VFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGG 331
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
+V EG F ME+DF + KLEHYGCMVDLLGRA L A +LI MP EP + G L
Sbjct: 332 MVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTL 391
Query: 380 LSACVIHQDLEIGDRVAKMV--CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
L AC H +E+ ++ A + SN G ++ +N+YA+ G+W+ R R +M
Sbjct: 392 LGACSFHGHVELAEKAAGALFELEPSN---PGNYVILSNIYATAGRWDGVARLRKLMKGG 448
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
I K AG S IE G HKF+ H
Sbjct: 449 KITKAAGYSFIEEGGHIHKFIVEDRSH 475
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 47/337 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + +SF L A LSS G MLH +K+GF V+ TAL+ MY L + A
Sbjct: 77 GCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLA 136
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
K F++M +D+ WNSM+ +A CG ++ A++L LMP ++VTS+ MISGYA+ G+
Sbjct: 137 RKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYA 196
Query: 125 SARYIF-----------------DKVPA-----------------------KDVVSWNSL 144
A +F +PA K++ N+L
Sbjct: 197 KALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNAL 256
Query: 145 ILAYTNAGEMEKAGEMFKKML-VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+ Y G ++KA +F+++ +N+ +WN+M+ G E ++LF +M PD
Sbjct: 257 LEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPD 316
Query: 204 YLTVTSVLSACANLGSLETGARIHVYAT---DNGLASNPHATTALIDMYAKCGSIEQSLE 260
+T VL AC + G + G H + + D +A ++D+ + G + ++ +
Sbjct: 317 DVTFVGVLLACTHGGMVVEGQ--HFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHD 374
Query: 261 VFYKSQVK-DVFCWNAMILGLALHGYGYAALKLLGEM 296
+ + ++ D W ++ + HG+ A K G +
Sbjct: 375 LILRMPMEPDSVVWGTLLGACSFHGHVELAEKAAGAL 411
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 124/293 (42%), Gaps = 50/293 (17%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
LI++ + A ++F + V +N ++ Y + + L+ +M
Sbjct: 20 KQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCS 79
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ + T + SACA+L S + G +H + +G + A TAL+DMYAK G + + +
Sbjct: 80 PNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQ 139
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT-FIGLLSACSHAGL 320
F + V+DV WN+MI G A G AL+L M A ++T + ++S + G
Sbjct: 140 FDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLM-----PARNVTSWTAMISGYAQNGQ 194
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
+ +F ME E P E L ++L
Sbjct: 195 YAKALSMFLMME--------------------------------EETEMRPNEVTLASVL 222
Query: 381 SACVIHQDLEIGDRVAKMVCAKSN------YLSDGELMMFANLYASCGQWEEA 427
AC LE+G+R+ V A+ N Y+S+ L M YA CG+ ++A
Sbjct: 223 PACANLGALEVGERIE--VYARGNGYFKNLYVSNALLEM----YARCGRIDKA 269
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 37/258 (14%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
+E + + + +L A L + +G + G+ ++YV ALL+MY I
Sbjct: 207 EETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRI 266
Query: 62 DDAFKVFEKMP-EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
D A+ VFE++ +++ +WNSM+ A G+ D A++L + ++ G
Sbjct: 267 DKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELF----------YKMLREG---- 312
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
A D V++ ++LA T+ G + + F+ M + + + M
Sbjct: 313 -------------AAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCM 359
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R+ E DL M ++PD + ++L AC+ G +E + A
Sbjct: 360 VDLLGRAGELREAHDLILRMP---MEPDSVVWGTLLGACSFHGHVELAEKA-AGALFELE 415
Query: 236 ASNPHATTALIDMYAKCG 253
SNP L ++YA G
Sbjct: 416 PSNPGNYVILSNIYATAG 433
>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
Length = 622
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/405 (38%), Positives = 230/405 (56%), Gaps = 2/405 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A K+FE+MP +D+++W +M+ A G +D A L D MP ++V S+N MISGYAR
Sbjct: 182 LERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARN 241
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+I A +F K+P +DV SWN +I + +++ A ++F +M +NVITW TM+ GYL
Sbjct: 242 HRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYL 301
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + LF+ M ++P+ +T L AC+NL +L G ++H +
Sbjct: 302 QCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTF 361
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ L+++YAKCG I + VF S KD+ WN +I A HG+G A+ L M ++
Sbjct: 362 VESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENG 421
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
K +D T++GLLSACSHAGLV EG ++F M KD + + EHY C+VDL RA L+ A
Sbjct: 422 YKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDA 481
Query: 361 IELIEAMPFEPTES-ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
LI +PT S + ALL C H + IGD AK + ++ + G + N+YA
Sbjct: 482 KRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLL-EAEPDNAGTYTLLCNIYA 540
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G+W+EA R+ MN G+ K G S IEV H F++ H
Sbjct: 541 SAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDKSH 585
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 177/364 (48%), Gaps = 46/364 (12%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-PLKDVTSFNIMISGYAR 119
+ DA ++F+ MP++D+++W +M+ A+A G + A L D ++V ++ ++SGYAR
Sbjct: 57 VSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGYAR 116
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
++ A +F+ + ++VVSWN+++ AYT G +E A +F +M V++ +WN ++ G
Sbjct: 117 ARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGL 176
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+RS +F+ M D ++ T+++S A GS++ + + + S
Sbjct: 177 VRSGSLERARKMFERMPV----RDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVS-- 230
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
A+I YA+ IE++L++F K ++DV WN MI G + +A +L EM
Sbjct: 231 --WNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEM--- 285
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K + IT+ +++ G +Q C M+ + L+ + CM
Sbjct: 286 -PKRNVITWTTMMN-----GYLQ--C-----MQSEMA----LKLFNCM------------ 316
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
L++ + +P + L AC L G +V +M+C + NLYA
Sbjct: 317 ---LVQGI--QPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYA 371
Query: 420 SCGQ 423
CG+
Sbjct: 372 KCGE 375
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 55/279 (19%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + +F L A L++ C G +H KT +V++ L+ +Y I A
Sbjct: 320 GIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLA 379
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF+ EKD+I+WN ++ A+A G AM L N+ +GY K +
Sbjct: 380 RNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYK----------NMQENGY----KPN 425
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
A Y+ L+ A ++AG +++ ++F+ M+ N I +R +
Sbjct: 426 DATYV-------------GLLSACSHAGLVDEGLKIFESMVKDNSIV--------VRDEH 464
Query: 185 YIEVVDLFDEMKAGN------------VKPDYLTV-TSVLSACANLGSLETG--ARIHVY 229
Y +VDL +AG +KP TV +++L C + G+ G A H+
Sbjct: 465 YTCLVDLCS--RAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLL 522
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
+ N T L ++YA G +++ E+ + V+
Sbjct: 523 EAE---PDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVR 558
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 252/431 (58%), Gaps = 6/431 (1%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V +T ++ Y + +A ++F++MP +++I+W +M+ + GQ+D A KL ++MP
Sbjct: 171 VVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPE 230
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K+ S+ M+ GY + G+I A +FD +P K VV+ N++IL + GE+ KA ++F ++
Sbjct: 231 KNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQI 290
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
K+ TW+ M+ Y R +E ++LF M+ V+ ++ ++ SVLS CA+L SL+ G
Sbjct: 291 REKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGR 350
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
++H + S+ + LI MY KCG + ++ ++F + KD+ WN++I G A HG
Sbjct: 351 QVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHG 410
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
AL++ EM S + D +TF+G+LSACS+ G V+EG E+F M+ + V K EHY
Sbjct: 411 LVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHY 470
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
CMVDLLGRA L++ A++LI+ MP E I GALL AC H ++ + + AK + +
Sbjct: 471 ACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLL-QLE 529
Query: 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIG- 463
+ G ++ +N+YAS G+W + R M + K+ G S IEV H F GG+
Sbjct: 530 PKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMF-TGGVST 588
Query: 464 ---HLSNLLTM 471
LS+++ M
Sbjct: 589 KHPELSSIMKM 599
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 153/326 (46%), Gaps = 44/326 (13%)
Query: 41 FCGHVYVQ-TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI 99
+C V + + + Y + I+ A +VF++MP+K I++WNSM+ + + A L
Sbjct: 11 YCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLF 70
Query: 100 DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGE 159
D MP ++ S+N +ISGY + + AR FD +P ++VVSW +++ Y G + +A
Sbjct: 71 DKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAET 130
Query: 160 MFKKMLVKNVITW-------------------------------NTMVTGYLRSQLYIEV 188
+F +M KNV++W M++GY + E
Sbjct: 131 LFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEA 190
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+LFDEM NV ++ T+++S G ++ ++ + N + TA++
Sbjct: 191 RELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMG 242
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
Y + G IE++ E+F VK V NAMILG +G A ++ ++ + DD T+
Sbjct: 243 YTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREK----DDGTW 298
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKD 334
++ G E LF+ M+++
Sbjct: 299 SAMIKVYERKGFEVEALNLFALMQRE 324
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 183/380 (48%), Gaps = 27/380 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
L+ Y R + +A K F+ MPE+++++W +M+ + G + A L MP K+V
Sbjct: 82 NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVV 141
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+ +M+ G ++ +I AR +FD +P KDVV+ ++I Y G + +A E+F +M +N
Sbjct: 142 SWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRN 201
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
VI+W TM++GY+++ LF+ M N ++ T++L G +E + +
Sbjct: 202 VISWTTMISGYVQNGQVDVARKLFEVMPEKN----EVSWTAMLMGYTQGGRIEEASELF- 256
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
D A A+I + + G + ++ +VF + + KD W+AMI G+
Sbjct: 257 ---DAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVE 313
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD------FGVTRKLE 342
AL L M V+++ + I +LS C+ + G ++ + + K F + +
Sbjct: 314 ALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLIT 373
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL-GALLSACVIHQDLEIGDRVAKMVCA 401
Y DL+ ++ DR F P + ++ ++++ H +E +V +C+
Sbjct: 374 MYVKCGDLVKARQIFDR---------FSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCS 424
Query: 402 KSNYLSDGELMMFANLYASC 421
S +DG + F + ++C
Sbjct: 425 -SGMATDG--VTFVGVLSAC 441
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 117/236 (49%), Gaps = 20/236 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV ++ S +L L+S G +H + +K+ F V+V + L+ MY ++C
Sbjct: 321 MQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMY--VKC 378
Query: 61 ID--DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMI 114
D A ++F++ KDI+ WNS++ +A G ++ A+++ M D +F ++
Sbjct: 379 GDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVL 438
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
S + GK+ IF+ + +K +V + ++ AG + A ++ +KM V+ +
Sbjct: 439 SACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEAD 498
Query: 169 VITWNTMVTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSACANLGSL 220
I W ++ G R+ + + + ++ +++ N P Y+ ++++ ++ G +
Sbjct: 499 AIIWGALL-GACRTHMNMNLAEVAAKKLLQLEPKNAGP-YILLSNIYASKGRWGDV 552
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 235/398 (59%), Gaps = 3/398 (0%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
D A ++F MP +D+ +WN+M+ + G ++ A + MP+++ S+N M+SG+A G
Sbjct: 97 DGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSG 156
Query: 122 KIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ +A F P K D V W +++ Y + G + KA + F+ M V+N+++WN +V GY+
Sbjct: 157 DMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYV 216
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ + + LF M + NV+P+ T++SVL C+NL +L G +IH + L+ N
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNL 276
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
T+L+ MY KCG + + +F + +DV WNAMI G A HG G A+ L M D
Sbjct: 277 TVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 336
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V+ + ITF+ +L+AC H GL G + F M++ +G+ +++HY CMVDLL RA L+R
Sbjct: 337 GVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A++ I +MPFEP S G LL+AC ++++LE + A + K + S G + AN+YA
Sbjct: 397 AVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK-DPQSAGAYVQLANIYA 455
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
QW++ +R R M D +VKT G S IE+ G H+F
Sbjct: 456 VANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEF 493
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 138/335 (41%), Gaps = 63/335 (18%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASC-GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
A + F P K +N +L +A G++ A L D +P DV S+N ++ + G
Sbjct: 36 AEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGD 95
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
AR +F +P +DV SWN+++ + +G +E+A +F M V+N ++WN MV+G+
Sbjct: 96 ADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGF--- 152
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
AC+ G + T A + +
Sbjct: 153 ------------------------------ACS--GDMSTAEEWFRNAPEK---EDAVLW 177
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCV 301
TA++ Y G++ ++++ F V+++ WNA++ G + + AL+L M ++ V
Sbjct: 178 TAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANV 237
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
+ + T +L CS+ + G ++ H CM LL R
Sbjct: 238 QPNASTLSSVLLGCSNLSALGFGKQI---------------HQWCMKLLLSR-------- 274
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA 396
L G L SAC++ ++ D VA
Sbjct: 275 NLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVA 309
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 118/229 (51%), Gaps = 15/229 (6%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--- 105
TA++ Y + + A K FE MP +++++WN+++ + D A++L M +
Sbjct: 178 TAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANV 237
Query: 106 --DVTSFNIMISGYARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
+ ++ + ++ G + + +IH ++ + ++++ SL+ Y G++ A
Sbjct: 238 QPNASTLSSVLLGCSNLSALGFGKQIH--QWCMKLLLSRNLTVGTSLVSMYCKCGDLSSA 295
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
+F +M ++V+ WN M++GY + E ++LF+ MK V+P+++T VL+AC +
Sbjct: 296 CILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHT 355
Query: 218 GSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
G + G + + G+ + ++D+ + G +E++++ F +S
Sbjct: 356 GLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVD-FIRS 403
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 27/291 (9%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI-EVVDLFDEMKAGNVKPD 203
+ A G++ A E F K T+N ++ GY R+ + + LFD + PD
Sbjct: 24 VAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPT----PD 79
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
++ ++L G + R+ +AS ++ +K G++E++ VF
Sbjct: 80 VVSYNTLLLCHFASGDADGARRLFASMPVRDVAS----WNTMVSGLSKSGAVEEAKVVFL 135
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
V++ WNAM+ G A G A + ++ K D + + ++S G V +
Sbjct: 136 AMPVRNSVSWNAMVSGFACSGDMSTAEEWF---RNAPEKEDAVLWTAMVSGYMDIGNVVK 192
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE----PTESILGAL 379
+ F M R L + +V + D A+ L M E P S L ++
Sbjct: 193 AIKYFEAMP-----VRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSV 247
Query: 380 LSACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYASCGQWEEA 427
L C L G ++ + C K S L+ G ++ ++Y CG A
Sbjct: 248 LLGCSNLSALGFGKQIHQW-CMKLLLSRNLTVGTSLV--SMYCKCGDLSSA 295
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E V + + +L LS+ G +H +K ++ V T+L+ MY
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGD 291
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
+ A +F +M +D++AWN+M+ +A G A+ L + M
Sbjct: 292 LSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERM 333
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 161/468 (34%), Positives = 248/468 (52%), Gaps = 30/468 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ D + +L + +G +H IK+ F + LL MY
Sbjct: 104 MMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGD 163
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A +VFEKM E+++++W SM+ + G D A+ L+ M + DV + ++
Sbjct: 164 LDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHA 223
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
AR G + + + + D + A ++ S N+L+ Y G ME A +F M+VK++I+W
Sbjct: 224 CARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISW 283
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTMV G +KPD T+ +L ACA+L +LE G IH Y
Sbjct: 284 NTMV---------------------GELKPDSRTMACILPACASLSALERGKEIHGYILR 322
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NG +S+ H AL+D+Y KCG + + +F KD+ W MI G +HGYG A+
Sbjct: 323 NGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 382
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM D+ ++ D+++FI +L ACSH+GL+++G F M+ DF + KLEHY CMVDLL
Sbjct: 383 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 442
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R L +A + IE +P P +I GALL C I+ D+E+ ++VA+ V + + G +
Sbjct: 443 RTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERV-FELEPENTGYYV 501
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ AN+YA +WEE R R + G+ K G S IE+ G + F++G
Sbjct: 502 LLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSG 549
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 164/355 (46%), Gaps = 27/355 (7%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
++ +A+CG + ++ D M K+V +N M+S YA+IG + +F + K +
Sbjct: 2 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S E A E+F K+ ++VI+WN+M++GY+ + L + ++ +M +
Sbjct: 62 RS-----------ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 110
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D T+ SVL CA G+L G +H A + + + L+DMY+KCG ++ +L V
Sbjct: 111 VDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 170
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K ++V W +MI G G+ A+ LL +M VK D + +L AC+ +G +
Sbjct: 171 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSL 230
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-------------P 368
G ++ ++ + + L ++D+ + ++ A + M
Sbjct: 231 DNGKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE 289
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCG 422
+P + +L AC LE G + + ++ Y SD + +LY CG
Sbjct: 290 LKPDSRTMACILPACASLSALERGKEIHGYI-LRNGYSSDRHVANALVDLYVKCG 343
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 156/310 (50%), Gaps = 36/310 (11%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGY 117
+ A ++F+K+ ++D+I+WNSM+ + S G + + + M D+ + ++ G
Sbjct: 64 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 123
Query: 118 ARIGKIHSARYIFD---KVPAKDVVSW-NSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
A+ G + + + K + +++ N+L+ Y+ G+++ A +F+KM +NV++W
Sbjct: 124 AKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 183
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
+M+ GY R + L +M+ VK D + +TS+L ACA GSL+ G +H Y N
Sbjct: 184 SMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 243
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
+ASN AL+DMYAKCGS+E + VF VKD+ WN M+
Sbjct: 244 NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV---------------- 287
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL--- 350
GE+ K D T +L AC+ ++ G E+ + ++ G + +VDL
Sbjct: 288 GEL-----KPDSRTMACILPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVK 341
Query: 351 ---LGRARLL 357
LG ARLL
Sbjct: 342 CGVLGLARLL 351
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/475 (34%), Positives = 260/475 (54%), Gaps = 10/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE G+ ++ + +L G + G LHG ++ F V V T LL MY +C
Sbjct: 201 MQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC 260
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-----TSFNIMIS 115
+ A K+F+ M ++ ++W++M+ + + M A++L D M LKD + ++
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320
Query: 116 GYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
A++ + R YI D++ N+L+ Y G ++ A F +M K+ ++
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVS 380
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
++ +V+G +++ + +F M+ + PD T+ VL AC++L +L+ G H Y
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 440
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G A++ ALIDMY+KCG I + EVF + D+ WNAMI+G +HG G AL
Sbjct: 441 VRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALG 500
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L ++ +K DDITFI LLS+CSH+GLV EG F M +DF + ++EH CMVD+L
Sbjct: 501 LFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDIL 560
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GRA L+D A I MPFEP I ALLSAC IH+++E+G+ V+K + + S G
Sbjct: 561 GRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPE-STGNF 619
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
++ +N+Y++ G+W++A R D G+ K G S IE+NG H F+ G HL
Sbjct: 620 VLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQ 674
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 162/337 (48%), Gaps = 17/337 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LGV + Y++P +LKA L + G+ +H G V+V TAL+ Y
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY-AR 119
+ +A ++F M +D++AWN+M+ + G D A++LI M + + + I G
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219
Query: 120 IGKI-----------HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+G+ + R FD VV L+ Y + A ++F M V+N
Sbjct: 220 VGEAKALGHGKALHGYCVRRSFD----NGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRN 275
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIH 227
++W+ M+ GY+ S E ++LFD+M + + P +T+ SVL ACA L L G ++H
Sbjct: 276 EVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLH 335
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
Y G + L+ MYAKCG I+ ++ F + KD ++A++ G +G
Sbjct: 336 CYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAA 395
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
AL + M S + D T +G+L ACSH +Q G
Sbjct: 396 VALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 151/348 (43%), Gaps = 36/348 (10%)
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
KIH ++ D + L Y + ++ A +F ++ +VI WN ++ Y
Sbjct: 29 KIH--QHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ + +DL+ M V+P+ T VL AC+ L ++E G IH +A GL S+
Sbjct: 87 NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
TAL+D YAKCG + ++ +F +DV WNAMI G +L+G A++L+ +M + +
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206
Query: 302 KADDITFIGLLSACSHAGLVQEG------------------------------CELFSRM 331
+ T +G+L A + G C L++R
Sbjct: 207 CPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARK 266
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPTESILGALLSACVIHQ 387
D R + M+ + + A+EL + M +PT LG++L AC
Sbjct: 267 IFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLT 326
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
DL G ++ + + L ++YA CG ++A R+ + MN
Sbjct: 327 DLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMN 374
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 164/380 (43%), Gaps = 17/380 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H +K V L ++Y S + A ++F+++P +I WN ++ A+A G
Sbjct: 30 IHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGP 89
Query: 92 MD------HAMKLIDLMPLKDVTSFNI-MISGYARIG---KIHSARYIFDKVPAKDVVSW 141
D H+M + + P K F + SG I +IHS +F DV
Sbjct: 90 FDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGL--ESDVFVC 147
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+L+ Y G + +A +F M ++V+ WN M+ G L + V L +M+ +
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC 207
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ T+ VL +L G +H Y + T L+DMYAKC + + ++
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-DSCVKADDITFIGLLSACSHAGL 320
F V++ W+AMI G AL+L +M + +T +L AC+
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI-LGAL 379
+ G +L + K G + ++ + + ++D AI + M P +S+ A+
Sbjct: 328 LSRGRKLHCYIIK-LGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEM--NPKDSVSFSAI 384
Query: 380 LSACVIHQDLEIGDRVAKMV 399
+S CV + + + + +M+
Sbjct: 385 VSGCVQNGNAAVALSIFRMM 404
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
VK +YL +L AC SL +IH + N ++ L +Y C + +
Sbjct: 7 VKNNYL---HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLAR 63
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F + V WN +I A +G A+ L M V+ + T+ +L ACS
Sbjct: 64 RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLL 123
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+++G E+ S K FG+ + +VD + +L A L +M
Sbjct: 124 AIEDGVEIHSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170
>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g35030, mitochondrial; Flags: Precursor
gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/407 (36%), Positives = 238/407 (58%), Gaps = 4/407 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID+A +FE+MP +D+++W +M+D A G++D A +L D MP +++ S+N MI+GYA+
Sbjct: 187 IDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQN 246
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+I A +F +P +D SWN++I + EM KA +F +M KNVI+W TM+TGY+
Sbjct: 247 NRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYV 306
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E +++F +M + G+VKP+ T S+LSAC++L L G +IH + + N
Sbjct: 307 ENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNE 366
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMN 297
T+AL++MY+K G + + ++F V +D+ WN+MI A HG+G A+++ +M
Sbjct: 367 IVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMR 426
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
K +T++ LL ACSHAGLV++G E F + +D + + EHY C+VDL GRA L
Sbjct: 427 KHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRL 486
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
I + S GA+LSAC +H ++ I V K V ++ G ++ +N+
Sbjct: 487 KDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVL-ETGSDDAGTYVLMSNI 545
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ G+ EEA R M + G+ K G S ++V H F+ G H
Sbjct: 546 YAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSH 592
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 146/285 (51%), Gaps = 13/285 (4%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-PLKDVTSFNIMISGYAR 119
I +A K+F+ +PE+D++ W ++ + G M A +L D + K+V ++ M+SGY R
Sbjct: 62 IAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLR 121
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
++ A +F ++P ++VVSWN++I Y +G ++KA E+F +M +N+++WN+MV
Sbjct: 122 SKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKAL 181
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E ++LF+ M + D ++ T+++ A G ++ R+ + + S
Sbjct: 182 VQRGRIDEAMNLFERMP----RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIIS-- 235
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
A+I YA+ I+++ ++F +D WN MI G + A L M +
Sbjct: 236 --WNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEK 293
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
V I++ +++ +E +FS+M +D V + Y
Sbjct: 294 NV----ISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTY 334
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 158/319 (49%), Gaps = 19/319 (5%)
Query: 12 SFPLLLKAAGILSSSC-IGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKVFE 69
S P + + ++ C +G + + + G V T ++ Y L + +A ++F+
Sbjct: 42 SRPRVPQPEWLIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFD 101
Query: 70 KM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++ K+++ W +M+ + Q+ A L MP ++V S+N MI GYA+ G+I A
Sbjct: 102 RVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALE 161
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD++P +++VSWNS++ A G +++A +F++M ++V++W MV G ++ E
Sbjct: 162 LFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEA 221
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI-- 246
LFD M N+ ++ ++++ A ++ ++ + AS T I
Sbjct: 222 RRLFDCMPERNI----ISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRN 277
Query: 247 -DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKAD 304
+M CG +F + K+V W MI G + AL + +M D VK +
Sbjct: 278 REMNKACG-------LFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPN 330
Query: 305 DITFIGLLSACSH-AGLVQ 322
T++ +LSACS AGLV+
Sbjct: 331 VGTYVSILSACSDLAGLVE 349
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 170/356 (47%), Gaps = 26/356 (7%)
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA-KDVVSWNSLILAY 148
G++ A KL D +P +DV ++ +I+GY ++G + AR +FD+V + K+VV+W +++ Y
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
+ ++ A +F++M +NV++WNTM+ GY +S + ++LFDEM N+ ++
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI----VSWN 175
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
S++ A G ++ + + S TA++D AK G ++++ +F +
Sbjct: 176 SMVKALVQRGRIDEAMNLFERMPRRDVVS----WTAMVDGLAKNGKVDEARRLFDCMPER 231
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
++ WNAMI G A + A +L M + + + G + + + C LF
Sbjct: 232 NIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNRE----MNKACGLF 287
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPTESILGALLSACV 384
RM + ++ + M+ + + A+ + M +P ++LSAC
Sbjct: 288 DRMPEKNVIS-----WTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACS 342
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
L G ++ +++ + ++ N+Y+ G+ A + M D G+V
Sbjct: 343 DLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARK----MFDNGLV 394
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 20/258 (7%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVIT 171
+I ++GKI AR +FD +P +DVV+W +I Y G+M +A E+F ++ KNV+T
Sbjct: 52 LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVT 111
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W MV+GYLRS+ LF EM NV ++ +++ A G ++ +
Sbjct: 112 WTAMVSGYLRSKQLSIAEMLFQEMPERNV----VSWNTMIDGYAQSGRIDKALELFDEMP 167
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ + S AL+ + G I++++ +F + +DV W AM+ GLA +G A +
Sbjct: 168 ERNIVSWNSMVKALV----QRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARR 223
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDL 350
L M + + I++ +++ + + E +LF M E+DF + M+
Sbjct: 224 LFDCMPERNI----ISWNAMITGYAQNNRIDEADQLFQVMPERDFA------SWNTMITG 273
Query: 351 LGRARLLDRAIELIEAMP 368
R R +++A L + MP
Sbjct: 274 FIRNREMNKACGLFDRMP 291
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 268/468 (57%), Gaps = 21/468 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G D+++FP +LKA +++ +G +H +KTGF VY TALL+MY +
Sbjct: 96 MRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGD 155
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-----KDVTSFNIMIS 115
++ A KVF+ +P+ +++AW S++ S A+++ M L ++T N++++
Sbjct: 156 MEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVA 215
Query: 116 GYARIGKIHSARYIFDKV------PAKDVVSWNSLILA------YTNAGEMEKAGEMFKK 163
AR +++ R++ D+ P + ++N +ILA Y G ++ A ++F K
Sbjct: 216 C-ARSRDLNAGRWVHDRTGQMGLDPFQSNSNFN-VILATAIVDMYAKCGSLKTARDLFNK 273
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +N++ WN+M+ Y + E +DLF +M+ PD T V+ ACA+LG+L +G
Sbjct: 274 MPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSG 333
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+H Y + L + TAL+DMYAK G E++ +VF + Q KDV W ++I+GLA+H
Sbjct: 334 QALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMH 393
Query: 284 GYGYAALKLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
G+G AL +M D+ + D+IT+IG+LSACSH G V++G F M+ G+ +
Sbjct: 394 GHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQ 453
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK 402
HYGCMVDLL RA L A L+E MP EP +I ALL+ C I+Q++++ DRV + V +
Sbjct: 454 HYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRV-RE 512
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
G ++ +N+YA +WEE R +M + I K+ G S +E+
Sbjct: 513 LEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEM 560
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 164/355 (46%), Gaps = 22/355 (6%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
LHG I T V + L+ Y ++ A VF ++ + WNSM+ ++
Sbjct: 24 LHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSIS 83
Query: 90 GQMDHAMKLIDLMPLK----DVTSFNI------MISGYARIGKIHSARYIFDKVPAKDVV 139
D A+ + M K D +F +++GY +H+ I DV
Sbjct: 84 ESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNC--IVKTGFEVDVY 141
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+ +L+ Y G+ME A ++F + NV+ W +++ G + + E V ++ +M+ +
Sbjct: 142 AATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWS 201
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL---ASNPH----ATTALIDMYAKC 252
V P+ +T+ +VL ACA L G +H GL SN + TA++DMYAKC
Sbjct: 202 VAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKC 261
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
GS++ + ++F K +++ WN+MI +G AL L +M + D TF+ ++
Sbjct: 262 GSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVI 321
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
AC+H G + G L + + K +T +VD+ ++ +RA ++ +
Sbjct: 322 GACAHLGALVSGQALHAYVSKT-NLTDDTAIGTALVDMYAKSGDAERAQQVFSEL 375
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/468 (34%), Positives = 252/468 (53%), Gaps = 11/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ DN+++ + A G +G +H K G ++ +L+ MY
Sbjct: 120 MKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKVGLERDDHISHSLIMMYAKCGL 179
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+ A KVF+++ ++ ++WNSM+ ++ G+ AM L M + D + M+
Sbjct: 180 VGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGA 239
Query: 117 YARIGKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + + R + K + + LI Y G+++ A +F +M+ K+ + W
Sbjct: 240 CAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAW 299
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+T Y ++ E LF EM+ V PD T+++VLSAC ++G+LE G RI +A++
Sbjct: 300 NAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASE 359
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L N + T L+DMY KCG IE++L VF VK+ WNAMI A G+ AL L
Sbjct: 360 ISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLL 419
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M V D+TFIG+LSAC HAGLV +GC F M FG+ K+EHY ++DLL
Sbjct: 420 FDQMP---VPPSDVTFIGVLSACVHAGLVDQGCRYFHEMSSLFGLVPKIEHYTNIIDLLS 476
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LLD A E +E P +P E +L A+L AC +D+ I ++ +M+ + G +
Sbjct: 477 RAGLLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYV 536
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ + + A W+E+ + R +M D G+VKT G S IE+NG +FLAG
Sbjct: 537 ISSKVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEINGELMEFLAG 584
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 144/383 (37%), Gaps = 81/383 (21%)
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
C ++ ++ M L V N +I +G + A ++ + S+N +I
Sbjct: 44 CISVNQLREIQAQMLLHSVEKPNFLIPKAVELGDFNYASFLLSVTEEPNHYSFNYMIRGL 103
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
TN WN + + L+ MK +KPD T
Sbjct: 104 TN--------------------IWND----------HEGALSLYRRMKYSGLKPDNFTYN 133
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
V AC + G +H GL + H + +LI MYAKCG + + +VF + +
Sbjct: 134 FVFIACGKREEIGVGRSVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDR 193
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
WN+MI G + G A+ L +M + + D+ T + +L AC+H G + G
Sbjct: 194 VTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTG---- 249
Query: 329 SRMEKDFGVTRK-----------LEHYGCMVDLLGRARLLDRAIEL-------------- 363
R+ + +T+K + YG DL R+ ++ I+
Sbjct: 250 -RLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQ 308
Query: 364 -------------IEAMPFEPTESILGALLSACVIHQDLEIGDRV---AKMVCAKSN-YL 406
+E P L +LSAC LE+G R+ A + + N Y+
Sbjct: 309 NGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYV 368
Query: 407 SDGELMMFANLYASCGQWEEANR 429
+ G ++Y CG EEA R
Sbjct: 369 ATG----LVDMYGKCGHIEEALR 387
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/472 (34%), Positives = 259/472 (54%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + +++P +L+ L + +G +H Q +KTGF +VYV + L+ MY L
Sbjct: 464 MQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGK 523
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+D A K+F ++ EKD+++W +M+ +A + A+ L M + + S NI IS
Sbjct: 524 LDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISA 583
Query: 117 YARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A I ++ + I + + D+ N+L+ Y G++ A F K+ K+ I+W
Sbjct: 584 CAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISW 643
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N++++G+ +S E + LF +M + + T +SA AN+ +++ G +IH
Sbjct: 644 NSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIK 703
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S + LI +YAKCG+I+ + F++ K+ WNAM+ G + HG+G+ AL L
Sbjct: 704 TGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSL 763
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M V + +TF+G+LSACSH GLV EG + F M + G+ K EHY C+VDLLG
Sbjct: 764 FEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLG 823
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R+ LL RA +E MP +P + LLSAC++H++++IG+ A + S +
Sbjct: 824 RSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDS-ATYV 882
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N+YA G+W +R R MM D G+ K G S IEVN S H F AG H
Sbjct: 883 LLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKH 934
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 167/340 (49%), Gaps = 12/340 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV+ Y F +L A + +G LHG +K GF YV AL+ +Y L
Sbjct: 262 MHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGN 321
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
A +VF M ++D +++NS++ + G D A++L M L D + ++S
Sbjct: 322 FIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSA 381
Query: 117 YARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ +G + HS Y + D++ +L+ Y +++ A E F +NV+
Sbjct: 382 CSSVGALLVGKQFHS--YAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVV 439
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M+ Y E +F +M+ ++P+ T S+L C++L +++ G +IH
Sbjct: 440 LWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQV 499
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G N + ++ LIDMYAK G ++ +L++F + + KDV W AMI G A H AL
Sbjct: 500 LKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEAL 559
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
L EM D + +D+I F +SAC+ + +G ++ ++
Sbjct: 560 NLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQ 599
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 174/377 (46%), Gaps = 18/377 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCI--GLMLHGQTIKTGFCGHVYVQTALLKMYGSL 58
M+E GV A++ ++ LL G LSS G LHG+ +K GFC V + L+ +Y +
Sbjct: 59 MEERGVRANSQTYLWLLD--GCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAF 116
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
+D A VF++MP + + WN +L F + + L M + V +G
Sbjct: 117 GDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVL 176
Query: 119 R-----------IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
R + KIH AR I V N LI Y G + A ++F + +
Sbjct: 177 RGCGGGDVPFHCVEKIH-ARTITHGYENSLFVC-NPLIDLYFKNGFLNSAKKVFDGLQKR 234
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+ ++W M++G +S E V LF +M V P +SVLSAC + + G ++H
Sbjct: 235 DSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLH 294
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
G + + AL+ +Y++ G+ + +VF +D +N++I GL+ GY
Sbjct: 295 GLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSD 354
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL+L +M C+K D +T LLSACS G + G + S K G++ + G +
Sbjct: 355 KALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKA-GMSSDIILEGAL 413
Query: 348 VDLLGRARLLDRAIELI 364
+DL + + A E
Sbjct: 414 LDLYVKCSDIKTAHEFF 430
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/442 (23%), Positives = 203/442 (45%), Gaps = 51/442 (11%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H +TI G+ ++V L+ +Y ++ A KVF+ + ++D ++W +ML + G
Sbjct: 192 IHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGC 251
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISG---------YARIG-KIHSARYIFDKVPAKDVVSW 141
+ A+ L M V + S + ++G ++H + + + +
Sbjct: 252 EEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHG--LVLKQGFSLETYVC 309
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+L+ Y+ G A ++F ML ++ +++N++++G + + ++LF +M +K
Sbjct: 310 NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLK 369
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +TV S+LSAC+++G+L G + H YA G++S+ AL+D+Y KC I+ + E
Sbjct: 370 PDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEF 429
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F ++ ++V WN M++ L + K+ +M ++ + T+ +L CS V
Sbjct: 430 FLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAV 489
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP------------- 368
G ++ +++ K G + ++D+ + LD A+++ +
Sbjct: 490 DLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAG 548
Query: 369 FEPTESILGAL---------------------LSACVIHQDLEIGDRVAKMVCAK--SNY 405
+ E AL +SAC Q L G ++ C S+
Sbjct: 549 YAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDD 608
Query: 406 LSDGELMMFANLYASCGQWEEA 427
LS G ++ +LYA CG+ +A
Sbjct: 609 LSVGNALV--SLYARCGKVRDA 628
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 167/502 (33%), Positives = 262/502 (52%), Gaps = 47/502 (9%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
+ YSF L A L IG+ +HG K+ + VY+ +AL+ MY R + A + F
Sbjct: 150 NEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAF 209
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSF-------- 110
+ M ++I++WNS++ + G A+++ D + L V S
Sbjct: 210 DDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIR 269
Query: 111 ----------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
N ++ YA+ +++ AR +FD++P +DVVS S++ Y
Sbjct: 270 EGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGY 329
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
A ++ A MF M+ +NV++WN ++ GY ++ E V LF +K ++ P + T
Sbjct: 330 AKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFG 389
Query: 209 SVLSACANLGSLETGARIHVYATDNGL------ASNPHATTALIDMYAKCGSIEQSLEVF 262
++L+ACANL L+ G + H + +G S+ +LIDMY KCG +E VF
Sbjct: 390 NLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVF 449
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ +D WNAMI+G A +GYG AL++ EM S + D +T IG+LSACSHAGLV+
Sbjct: 450 ERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVE 509
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EG F M + G+ +HY CMVDLLGRA LD A LI+ MP EP + G+LL+A
Sbjct: 510 EGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAA 569
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C +H ++ +G VA+ + + + L+ G ++ +N+YA G+W++ R R M G++K
Sbjct: 570 CKVHGNITLGKYVAERLL-EIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQ 628
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
G S I + H F+ H
Sbjct: 629 PGCSWISIQSHLHVFMVKDKRH 650
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 191/442 (43%), Gaps = 77/442 (17%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ F LL S ++H + IKT F +++Q L+ +YG ++DA KVF
Sbjct: 18 DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA-R 127
+ M +++ +WN++L A G +D A+ L MP +D S+N M+SG+A+ + A R
Sbjct: 78 DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137
Query: 128 YIFD---------------------------------KVPAK-----DVVSWNSLILAYT 149
++ D + AK DV ++L+ Y+
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
+ A F M V+N+++WN+++T Y ++ + +++F M ++PD +T+ S
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLAS 257
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHAT-TALIDMYAKCGSIEQSLEVFYKSQVK 268
V SACA+L ++ G +IH + N AL+DMYAKC + ++ VF + ++
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
DV +M+ G A AA + M + V +++ L++ + G +E LF
Sbjct: 318 DVVSETSMVSGYAKASSVKAARLMFSNMMERNV----VSWNALIAGYTQNGENEEAVRLF 373
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQD 388
++++ PT G LL+AC D
Sbjct: 374 LLLKRE---------------------------------SIWPTHYTFGNLLNACANLAD 400
Query: 389 LEIGDRVAKMVCAKSNYLSDGE 410
L++G + + + GE
Sbjct: 401 LKLGRQAHTHILKHGFWFKSGE 422
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 170/469 (36%), Positives = 265/469 (56%), Gaps = 16/469 (3%)
Query: 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCG--HVYVQTALLKMYGSLRCIDDAFKVFEKM 71
P ++ I SS G + H I F +++ ALLK + F
Sbjct: 57 PNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQ 116
Query: 72 ------PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----FNIMISGYARIG 121
P D + S+L A A Q+ K+ + S N ++ Y ++G
Sbjct: 117 LVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVG 176
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
A+ +FD++ +DVVSWN+LI Y +G ++KA +F M+ KN+++W+TM++GY R
Sbjct: 177 CNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYAR 236
Query: 182 SQLYIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ Y + ++LF +M+ G + P+ +T+ SVLSACA+LG+L+ G IH + N +
Sbjct: 237 NEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLF 296
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
AL DMYAKCG + ++ VF++ +DV W+ +I+GLA++GY A EM +
Sbjct: 297 LGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDG 356
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
++ +DI+F+GLL+AC+HAGLV +G E F M + +G+T K+EHYGC+VDLL RA LD+A
Sbjct: 357 LEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQA 416
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYA 419
LI +MP +P + GALL C I++D E G+RV +++ SN+ G L+ AN+YA
Sbjct: 417 ESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNH--SGSLVYLANVYA 474
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNL 468
S G+ ++A R M D +KT G S IE+N S ++F G H +L
Sbjct: 475 SMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSL 523
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 145/319 (45%), Gaps = 42/319 (13%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
+ D Y+F +LKA L+ G +H K G +++V+ +L+ +Y + C A K
Sbjct: 124 NPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQK 183
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
+F++M +D+++WN+++ + G +D A + D M K++ S++ MISGYAR K A
Sbjct: 184 LFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADA 243
Query: 127 RYIFDKVP-----------------------AKDVVSW-----------------NSLIL 146
+F ++ A D+ W N+L
Sbjct: 244 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 303
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G + +A +F +M ++VI+W+ ++ G E + F EM ++P+ ++
Sbjct: 304 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 363
Query: 207 VTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+L+AC + G ++ G + G+ ++D+ ++ G ++Q+ +
Sbjct: 364 FMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM 423
Query: 266 QVK-DVFCWNAMILGLALH 283
++ +V W A++ G ++
Sbjct: 424 PMQPNVIVWGALLGGCRIY 442
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 249/466 (53%), Gaps = 65/466 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G +NY+F LL+A LS G++LH Q ++ G+ + +VQ
Sbjct: 104 MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQ------------ 151
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
N +L +ASC MD
Sbjct: 152 -------------------NGLLHLYASCNCMD--------------------------- 165
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
SAR +FD +DVV+W ++I Y +G++ A ++F +M KN ++W+ M+TGY
Sbjct: 166 ----SARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYA 221
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ L+ E ++LF++M+ +P++ + L+ACA LG+L+ G IH Y N + +
Sbjct: 222 QIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRI 281
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TALIDMYAKCG +E + VF + +DVF + ++I GLA HG+ A+++ M +
Sbjct: 282 LGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEG 341
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V +++TFI LLSACS GLV+EG +F M +G+ ++HYGC+VDLLGRA +L+ A
Sbjct: 342 VCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDA 401
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYA 419
++ MP EP +LGALL+AC +H D+E+G + C L G + ++ +N+YA
Sbjct: 402 KRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVE--CLAERSLDHGGVHVLLSNMYA 459
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
S QWE+ + R M + + K G S+IEV+G+ +F+AG + H+
Sbjct: 460 SANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHV 505
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD A ++S+ A + G++ A +F + + WNTM+ + + V
Sbjct: 42 LFDPFAAGRIISF----CAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATV 97
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ L+ M + P+ T + +L ACA L L G +H A G + L+ +
Sbjct: 98 LSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHL 157
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YA C ++ + +F S +DV W A+I G A G A +L EM + + +++
Sbjct: 158 YASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEK----NAVSW 213
Query: 309 IGLLSACSHAGLVQEGCELFSRME 332
+++ + GL +E ELF+ M+
Sbjct: 214 SAMITGYAQIGLFREALELFNDMQ 237
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/453 (36%), Positives = 260/453 (57%), Gaps = 14/453 (3%)
Query: 24 SSSCIGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI----IA 78
+S +G +L+ Q + G + ++ A+++ Y + + AF +++M +
Sbjct: 31 TSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYT 90
Query: 79 WNSMLDAFASCGQMDHAMKL----IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP 134
+ +L A + M A+++ I L DV + N ++ YA G+IH AR +FD +P
Sbjct: 91 FPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIP 150
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
+D VSWN +I Y +G+++ A +F M +KNV++W ++++G + + +E + L E
Sbjct: 151 ERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYE 210
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M+ + D + + S+L+ACANLG+L+ G +H Y +NG+ + AL++MY KCG
Sbjct: 211 MQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGD 270
Query: 255 IEQSLEVF--YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
+E++L VF K KDV+ W AMI G A+HG G AL+ M ++ + ITF +L
Sbjct: 271 MEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVL 330
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
ACS+ GLV+EG ELF M+ + V +EHYGCMVDLLGR+ LD A ELI+ MP +P+
Sbjct: 331 RACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPS 390
Query: 373 ESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWR 431
I GALL AC IH+D +G +V A +V S++ G + A + A+ G+W+EA R
Sbjct: 391 AVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDH--SGRYIQLATILAAEGKWKEAAEVR 448
Query: 432 NMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M G+ + G S + +NG H+FLAG H
Sbjct: 449 LKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDH 481
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 145/322 (45%), Gaps = 45/322 (13%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ++Y+FP LL+A L + L +HG IK GF V+ ALL +Y I A
Sbjct: 84 VPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCAR 143
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY-------- 117
++F+ +PE+D ++WN M+D + G + A + MPLK+V S+ +ISG
Sbjct: 144 QLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVE 203
Query: 118 ---------------------------ARIGKIHSAR----YIFDKVPAKDVVSWNSLIL 146
A +G + R Y+ + D V +L+
Sbjct: 204 ALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVN 263
Query: 147 AYTNAGEMEKAGEMFKKML--VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
Y G+ME+A +F K+ K+V W M+ G+ +E ++ F+ M+ ++P+
Sbjct: 264 MYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNS 323
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT--ALIDMYAKCGSIEQSLEVF 262
+T T+VL AC+ G +E G + + NP ++D+ + G ++++ E+
Sbjct: 324 ITFTAVLRACSYGGLVEEGKEL-FKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELI 382
Query: 263 YKSQVK-DVFCWNAMILGLALH 283
K +K W A++ +H
Sbjct: 383 KKMPMKPSAVIWGALLKACWIH 404
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 163/542 (30%), Positives = 275/542 (50%), Gaps = 82/542 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+++G D ++FPL+++A + S +G +HG ++ GF H++V L+ MY L
Sbjct: 33 MRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGR 92
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFA--------------------------------- 87
+ DA +F++M + I+WN+M+ A+A
Sbjct: 93 MRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISS 152
Query: 88 --SCGQMDHAMKLIDLMPLK-----------------DVTSF------------------ 110
G + AM+L LM +K D+ +F
Sbjct: 153 YARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEY 212
Query: 111 ----NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-- 164
+ +I Y + G ++ A +F ++ K + SWN+LI ++ AG ++A E+F ++
Sbjct: 213 SFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLER 272
Query: 165 ------LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
L NV++W+ ++ G+ E ++LF M+ + + +T+++VLS CA L
Sbjct: 273 SGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELA 332
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+L G IH + + +N L++MYAKCG +++ +F K++ KD+ WN+MI
Sbjct: 333 ALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMIT 392
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
G +HG G AL+ +M K D +TF+ +LS+CSH+GLV EG LF +M K + +
Sbjct: 393 GYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIE 452
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
++EHY CMVDLLGRA LL A E+++ MP P + GALL++C +H + EI + A
Sbjct: 453 PQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEETASH 512
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ S+ + G M+ +N+YA+ G+WE++ R R G+ K G S I+V + + F
Sbjct: 513 LFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKNVYTFS 572
Query: 459 AG 460
AG
Sbjct: 573 AG 574
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 251/470 (53%), Gaps = 10/470 (2%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
G ADN+++P +LKA G L IG +H + + G +YV +LL MY +
Sbjct: 155 FGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGT 214
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYAR 119
A VF++M E+D+ +WN+M+ +A A + DLM D T+ ++S A
Sbjct: 215 ARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACAD 274
Query: 120 IGKIHSARYIFDKVPAKDVVSWN-----SLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
+ + + I + ++N SLI Y N M A +F+++ K+ ++WN+
Sbjct: 275 LKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNS 334
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ GY R+ E + LF M PD +T +VL AC + +L G IH Y G
Sbjct: 335 MILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKG 394
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
+N TAL+DMY+KCGS+ S VF + K + W+AM+ G LHG G A+ +L
Sbjct: 395 FDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILD 454
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
M + V D+ F +LSACSHAGLV EG E+F +MEK++ V L HY CMVDLLGRA
Sbjct: 455 GMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRA 514
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
LD A +I M +PT I ALL+A +H+++++ + A+ V + + + +
Sbjct: 515 GHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICL- 573
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA+ +W++ R R M+ G+ K+ G S IE++ H+FL G H
Sbjct: 574 SNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSH 623
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 146/315 (46%), Gaps = 10/315 (3%)
Query: 29 GLMLHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
G LH I + Y+ T L Y + A +F+ + K+ WN M+ +A
Sbjct: 78 GQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYA 137
Query: 88 SCGQMDHAMKLIDLM----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVV 139
S G ++ L M D ++ ++ + + R + +V D+
Sbjct: 138 SNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIY 197
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
NSL+ Y G+M A +F +M +++ +WNTM++GY ++ +FD M
Sbjct: 198 VGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAG 257
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NPHATTALIDMYAKCGSIEQS 258
+ D T+ +LSACA+L +++ G IH YA N + + N T +LI+MY C + +
Sbjct: 258 LFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDA 317
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+F + + KD WN+MILG A +G + +L+L M D +TFI +L AC
Sbjct: 318 RRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQI 377
Query: 319 GLVQEGCELFSRMEK 333
++ G + S + K
Sbjct: 378 AALRYGMSIHSYLVK 392
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 138/327 (42%), Gaps = 34/327 (10%)
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G M +A +F +++KN WN M+ GY + L ++ + L+ EM + D T
Sbjct: 105 YAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTY 164
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
VL AC +L +E G R+H GL S+ + +L+ MYAK G + + VF +
Sbjct: 165 PFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAE 224
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+D+ WN MI G A + A + M + + AD T +GLLSAC+ V+EG +
Sbjct: 225 RDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVI 284
Query: 328 FSRMEKD-------FGVTRKLEHY---GCMVD-------------------LLGRARLLD 358
++ F +E Y CMVD +LG AR D
Sbjct: 285 HGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGD 344
Query: 359 --RAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
++ L M + P + A+L AC L G + + K +
Sbjct: 345 AFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTA 404
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIV 440
++Y+ CG + R + M D +V
Sbjct: 405 LVDMYSKCGSLACSRRVFDEMPDKSLV 431
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNG-LASNPHATTALIDMYAKCGSIEQSLEVFY 263
L ++L + N S + G ++H + L +N + T L YA CG + Q+ +F
Sbjct: 60 LQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFD 119
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+K+ F WN MI G A +G +L L EM +AD+ T+ +L AC LV+
Sbjct: 120 GIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEI 179
Query: 324 GCELFSR-----MEKDFGVTRKLEHYGCMVDLLGRARLL-DRAIE 362
G + S +E D V L +G AR++ DR E
Sbjct: 180 GRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAE 224
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 155/432 (35%), Positives = 239/432 (55%), Gaps = 42/432 (9%)
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
E D++ N +++ +A CG ++ A KL + MP++DV S+N +I GY+ + H A F++
Sbjct: 253 ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNR 312
Query: 133 ----------------VPA------------------------KDVVSWNSLILAYTNAG 152
+PA DVV N+L+ Y G
Sbjct: 313 MQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVG-NALVNMYAKCG 371
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+ A ++F++M KNV+ WN +++GY + E + LF EM+A +KPD + SVL
Sbjct: 372 NVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLP 431
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
ACA+ +LE G +IH Y +G SN T L+D+YAKCG++ + ++F + +DV
Sbjct: 432 ACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVS 491
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
W MIL +HG+G AL L +M ++ K D I F +L+ACSHAGLV +G + F M+
Sbjct: 492 WTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMK 551
Query: 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG 392
D+G+ KLEHY C+VDLLGRA LD A +I+ M EP ++ GALL AC IH ++E+G
Sbjct: 552 SDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELG 611
Query: 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
++ AK + + + + G ++ +N+YA +WE+ + R MM + G+ K G SV+ V+
Sbjct: 612 EQAAKHLF-ELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHR 670
Query: 453 SYHKFLAGGIGH 464
FL G H
Sbjct: 671 DVQTFLVGDRTH 682
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 154/308 (50%), Gaps = 17/308 (5%)
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----FNIMISGYARIGKIHSARY 128
+ + W + + G + A++L M + F +I + + R
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141
Query: 129 IFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+ + + A+ DV+ +L YT G +E A ++F +M ++V++WN ++ GY ++
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQ 201
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E + LF EM+ +KP+ T+ SV+ CA+L +LE G +IH YA +G+ S+
Sbjct: 202 PYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNG 261
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L++MYAKCG++ + ++F + ++DV WNA+I G +L+ + AL M +K +
Sbjct: 262 LVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPN 321
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY----GCMVDLLGRARLLDRA 360
IT + +L AC+H +++G ++ + + E +V++ + ++ A
Sbjct: 322 SITMVSVLPACAHLFALEQGQQIHG-----YAIRSGFESNDVVGNALVNMYAKCGNVNSA 376
Query: 361 IELIEAMP 368
+L E MP
Sbjct: 377 YKLFERMP 384
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 11/212 (5%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N + W + GY+++ + + + L+ +M+ + PD L SV+ AC + L+ G ++H
Sbjct: 84 NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
G S+ TAL MY KCGS+E + +VF + +DV WNA+I G + +G Y
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF-----SRMEKDFGVTRKLE 342
AL L EM + +K + T + ++ C+H +++G ++ S +E D V L
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL- 262
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
V++ + ++ A +L E MP S
Sbjct: 263 -----VNMYAKCGNVNTAHKLFERMPIRDVAS 289
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 249/466 (53%), Gaps = 65/466 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G +NY+F LL+A LS G++LH Q ++ G+ + +VQ
Sbjct: 79 MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQ------------ 126
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
N +L +ASC MD
Sbjct: 127 -------------------NGLLHLYASCNCMD--------------------------- 140
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
SAR +FD +DVV+W ++I Y +G++ A ++F +M KN ++W+ M+TGY
Sbjct: 141 ----SARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYA 196
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ L+ E ++LF++M+ +P++ + L+ACA LG+L+ G IH Y N + +
Sbjct: 197 QIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRI 256
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TALIDMYAKCG +E + VF + +DVF + ++I GLA HG+ A+++ M +
Sbjct: 257 LGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEG 316
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V +++TFI LLSACS GLV+EG +F M +G+ ++HYGC+VDLLGRA +L+ A
Sbjct: 317 VCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDA 376
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYA 419
++ MP EP +LGALL+AC +H D+E+G + C L G + ++ +N+YA
Sbjct: 377 KRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVE--CLAERSLDHGGVHVLLSNMYA 434
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
S QWE+ + R M + + K G S+IEV+G+ +F+AG + H+
Sbjct: 435 SANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHV 480
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD A ++S+ A + G++ A +F + + WNTM+ + + V
Sbjct: 17 LFDPFAAGRIISF----CAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATV 72
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ L+ M + P+ T + +L ACA L L G +H A G + L+ +
Sbjct: 73 LSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHL 132
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YA C ++ + +F S +DV W A+I G A G A +L EM + + +++
Sbjct: 133 YASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEK----NAVSW 188
Query: 309 IGLLSACSHAGLVQEGCELFSRME 332
+++ + GL +E ELF+ M+
Sbjct: 189 SAMITGYAQIGLFREALELFNDMQ 212
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 160/506 (31%), Positives = 262/506 (51%), Gaps = 44/506 (8%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
+ G+ + ++ P +LKA + + L HG +K GF ++V ALL + S +
Sbjct: 107 QRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLR 166
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSF-------- 110
D+ + F +M ++++++WN+M+ +A G++ A L M L DV +
Sbjct: 167 DSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACS 226
Query: 111 -------------NIMISG--------------YARIGKIHSARYIFDKVPAKDVVSWNS 143
++++SG Y + G + A FD +P K+VV+W S
Sbjct: 227 SEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTS 286
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
++ A G ++ + F++M +N+++WN M++ Y++ E +DL++ M++ + PD
Sbjct: 287 MLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPD 346
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEV 261
T+ VLSAC G L +G IH Y DN ++P T +L+DMYA+CG ++ ++ +
Sbjct: 347 EFTLAGVLSACGQNGDLASGKMIHCYVRDN--FNDPGVTLLNSLLDMYARCGQVDTAIGL 404
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + K+V WN +I LA+HG + M D+ITF+GLLSACSH GL+
Sbjct: 405 FTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLL 464
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+ G F M + + V ++EHYGCMVDLLGR L +A+ LI+ M +P + GALL
Sbjct: 465 EAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLG 524
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH ++EIG V K + ++ G ++ NL+ QWE+ + R +M + G K
Sbjct: 525 ACRIHGNVEIGKLVIKQLLELEG-ITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKK 583
Query: 442 TAGSSVIEVNGSYHKFLAGGIGHLSN 467
G S IEV H+F + H S
Sbjct: 584 DMGVSSIEVKNIIHEFGVEDLRHEST 609
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/418 (23%), Positives = 182/418 (43%), Gaps = 67/418 (16%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCID------DAFKVFEKMPEKDIIAWNSMLDA 85
+H + GF V + L+ Y +L D A ++F+++PE D +N+++ A
Sbjct: 29 IHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVRA 88
Query: 86 FASCGQMDHAMKL------IDLMP--------LKDVTSFNIMISGYARIGKIHSARYIFD 131
+++ A++L ++P LK T+ + A G + ++
Sbjct: 89 YSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFV-- 146
Query: 132 KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
+ + N+L+ + +AG + + F +M +NV++WNTM+ GY ++ E L
Sbjct: 147 ----QQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACAL 202
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
F EM+ + D T+ S+L AC++ G+LE G +H + +G + AL+DMY K
Sbjct: 203 FGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGK 262
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
CG + + F +K+V W +M+ A HG A +M + + +++ +
Sbjct: 263 CGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNI----VSWNAM 318
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP 371
+S G + E +L++RM + G+T P
Sbjct: 319 ISCYVQCGRLHETLDLYNRM-RSLGIT--------------------------------P 345
Query: 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM--FANLYASCGQWEEA 427
E L +LSAC + DL G + V + N+ G ++ ++YA CGQ + A
Sbjct: 346 DEFTLAGVLSACGQNGDLASGKMIHCYV--RDNFNDPGVTLLNSLLDMYARCGQVDTA 401
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 139/329 (42%), Gaps = 49/329 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ AD ++ LL A + +G ++H + +G + ALL MYG
Sbjct: 206 MRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGD 265
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A + F+ MP K+++ W SML A A G +D + MP +++ S+N MIS Y +
Sbjct: 266 LWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQC 325
Query: 121 GKIHSAR---------------------------------------YIFDKVPAKDVVSW 141
G++H Y+ D V
Sbjct: 326 GRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLL 385
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSL+ Y G+++ A +F +M KNVI+WN ++ E V F M +
Sbjct: 386 NSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFS 445
Query: 202 PDYLTVTSVLSACANLGSLETG-----ARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
PD +T +LSAC++ G LE G A VY + + ++D+ + G +
Sbjct: 446 PDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEH----YGCMVDLLGRRGHLA 501
Query: 257 QSLEVFYKSQVK-DVFCWNAMILGLALHG 284
+++ + +K DV W A++ +HG
Sbjct: 502 KAVNLIKDMSIKPDVVVWGALLGACRIHG 530
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 215/349 (61%), Gaps = 1/349 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y + G + +A +F+++ +DV+SWNSLI Y G+M A E+F M V+ ++
Sbjct: 150 NALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIV 209
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W TM+TGY R Y + +D+F EM+ ++PD +++ +VL ACA LG+LE G IH+YA
Sbjct: 210 SWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYA 269
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
NG ALI+MYAKCG I+++ +F + KDV W+ MI GLA HG GY A+
Sbjct: 270 DKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAI 329
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L EM V ++ITF+G+L ACSH GL EG + F M + + ++EHYGC++DL
Sbjct: 330 QLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDL 389
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGR+ L +A++ I MP +P I +LLS+C IH++L+I K + S G
Sbjct: 390 LGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEES-GN 448
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
++ AN+YA G+WE+ + R ++ + I KT GSS IEVN +F++
Sbjct: 449 YVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVVQEFVS 497
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 153/320 (47%), Gaps = 43/320 (13%)
Query: 6 VHADNYSFPLLLKA-AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
V D ++FP ++K+ GIL +G+ +HG K G H + AL+ MY + +A
Sbjct: 107 VFPDKFTFPFVIKSCTGILCHR-LGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNA 165
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
KVFE+M +D+I+WNS++ + GQM+ A +L D MP++ + S+ MI+GY R+G
Sbjct: 166 CKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYG 225
Query: 125 SARYIFDKVP----------------------AKDVVSW-----------------NSLI 145
A +F ++ A +V W N+LI
Sbjct: 226 DALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALI 285
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y G +++A +F +++ K+VI+W+TM+ G E + LF+EM V P+ +
Sbjct: 286 EMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEI 345
Query: 206 TVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T VL AC++ G + G + V + + LID+ + G + Q+L+ K
Sbjct: 346 TFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISK 405
Query: 265 SQVK-DVFCWNAMILGLALH 283
+K D WN+++ +H
Sbjct: 406 MPIKPDSRIWNSLLSSCRIH 425
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 141/323 (43%), Gaps = 42/323 (13%)
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM---KAGNVKPDYLT 206
N G + A +FK++L N+ T+N ++ Y ++ + + +F +M +V PD T
Sbjct: 54 NLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFT 113
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
V+ +C + G ++H G + ALIDMY K G + + +VF +
Sbjct: 114 FPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMS 173
Query: 267 VKDVFCWNAMILGLA--------------------------LHGYGYA-----ALKLLGE 295
+DV WN++I G + GYG AL + E
Sbjct: 174 HRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFRE 233
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M ++ D+I+ I +L AC+ G ++ G + +K+ G RK ++++ +
Sbjct: 234 MQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKN-GFLRKTGICNALIEMYAKCG 292
Query: 356 LLDRAIELIEAMPFEPT---ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
+D A L + + + +++G L + ++ +++ + + K+ A + G L+
Sbjct: 293 CIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLL 352
Query: 413 MFANLYASCGQWEEANRWRNMMN 435
++ G W+E ++ ++M+
Sbjct: 353 ACSH----TGLWDEGLKYFDVMS 371
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ +G+ D S +L A L + +G +H K GF + AL++MY C
Sbjct: 234 MQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGC 293
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
ID+A+ +F+++ EKD+I+W++M+ A+ G+ A++L + M
Sbjct: 294 IDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEM 335
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 47/459 (10%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + ++FP +LKA S G +HG +K GF +V + L++MY ++DA+
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAY 177
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
+F K +++D SC QM+ + D +V +NIMI G R+
Sbjct: 178 SLFCK----------NVVDFDGSC-QMELDKRKQD----GNVVLWNIMIDGQVRL----- 217
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
G+++ A +F +M ++V++WN M++GY ++ +
Sbjct: 218 --------------------------GDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHF 251
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
IE ++LF EM++ N+ P+Y+T+ SVL A A +G+LE G IH+YA N + + +AL
Sbjct: 252 IEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSAL 311
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
+DMY+KCGSI+++L+VF ++ W+A+I A+HG A+ M + V +D
Sbjct: 312 VDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPND 371
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+ +IG+LSACSHAGLV+EG FS M K G+ ++EHYGCMVDLLGRA L+ A ELI
Sbjct: 372 VAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIR 431
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
MP EP + I ALL AC +H++L++G+RVA+ + + + S G + +NLYAS G WE
Sbjct: 432 NMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDS-GSYVALSNLYASLGNWE 490
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R R M I K G S IE++G H+FL H
Sbjct: 491 AVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSH 529
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 67/296 (22%)
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS---QLY 185
I D + A +V+ + + ++ +++ A +F++M N WNT++ + L
Sbjct: 48 IQDPLTAAEVIKFCAF-----SSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQ 102
Query: 186 IEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E + LF M G VKP+ T SVL ACA L G +IH G + +
Sbjct: 103 SEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISN 162
Query: 245 LIDMYAKCGSIEQSLEVFYKSQV------------------------------------- 267
L+ MY C +E + +F K+ V
Sbjct: 163 LVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKS 222
Query: 268 ----------KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ V WN MI G A +G+ A+ L EM S + + +T + +L A +
Sbjct: 223 AKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIAR 282
Query: 318 AGLVQEG--CELFS---RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G ++ G L++ ++E D + L VD+ + +D A+++ E +P
Sbjct: 283 IGALELGKWIHLYAGKNKIEIDDVLGSAL------VDMYSKCGSIDEALQVFETLP 332
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 254/472 (53%), Gaps = 40/472 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H IKT +V LL++Y + ID A K+F ++ + S++D F S G
Sbjct: 46 IHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGS 105
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISG----------------------------------- 116
A+ L M K V + N ++
Sbjct: 106 YTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALK 165
Query: 117 ----YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
Y + G + AR +FD +P +DVV+ +I + + G +E+A E+F +M ++ + W
Sbjct: 166 LVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCW 225
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++ G +R+ + +++F EM+ V+P+ +T VLSACA LG+LE G IH Y
Sbjct: 226 TMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRK 285
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G+ N ALI+MY++CG I+++ +F +VKDV +N+MI GLALHG A++L
Sbjct: 286 CGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVEL 345
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM V+ + ITF+G+L+ACSH GLV G E+F ME G+ ++EHYGCMVD+LG
Sbjct: 346 FSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILG 405
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R L+ A + I M E + +L +LLSAC IH+++ +G++VAK++ ++ + G +
Sbjct: 406 RVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLL-SEHYRIDSGSFI 464
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M +N YAS G+W A R M GI+K G S IEVN + H+F +G + H
Sbjct: 465 MLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRH 516
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 169/372 (45%), Gaps = 48/372 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ADNY+ +LKA + + G +HG +K+G + L+++YG ++DA
Sbjct: 121 VLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDAR 180
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
K+F+ MPE+D++A M+ + CG ++ A+++ + M +D + ++I G R G+ +
Sbjct: 181 KMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNR 240
Query: 126 ARYIFDKVPAKDVVS----------------------W-----------------NSLIL 146
+F ++ K V W +LI
Sbjct: 241 GLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALIN 300
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y+ G++++A +F + VK+V T+N+M+ G IE V+LF EM V+P+ +T
Sbjct: 301 MYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGIT 360
Query: 207 VTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
VL+AC++ G ++ G I +G+ ++D+ + G +E++ + +
Sbjct: 361 FVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRM 420
Query: 266 QVK-DVFCWNAMILGLALH---GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
V+ D +++ +H G G KLL E + D +FI L + + G
Sbjct: 421 GVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEH----YRIDSGSFIMLSNFYASLGRW 476
Query: 322 QEGCELFSRMEK 333
E+ +MEK
Sbjct: 477 SYAAEVREKMEK 488
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 109/276 (39%), Gaps = 46/276 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV + +F +L A L + +G +H K G + +V AL+ MY
Sbjct: 248 MQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGD 307
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID+A +F+ + KD+ +NSM+ A G+ A++L M + V I G
Sbjct: 308 IDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVG---- 363
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
++ A ++ G ++ GE+F+ M + V + M
Sbjct: 364 -----------------------VLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCM 400
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC---ANLGSLETGARI--HVYA 230
V R E D M V+ D + S+LSAC N+G E A++ Y
Sbjct: 401 VDILGRVGRLEEAFDFIGRM---GVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYR 457
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
D+G + L + YA G + EV K +
Sbjct: 458 IDSG------SFIMLSNFYASLGRWSYAAEVREKME 487
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 153/411 (37%), Positives = 245/411 (59%), Gaps = 38/411 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSS-SCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR---- 59
G D+++FP L+K+A LSS G ++ Q + GF +V +LL MY + R
Sbjct: 87 GYLPDHFTFPPLVKSASRLSSFPRTGAQVYAQAARRGFLADTFVVNSLLAMYAAFRDTAS 146
Query: 60 --------------------------C--IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
C I +A +VF++MP ++ ++W+ M+ A+A+ G+
Sbjct: 147 MRAVFESCAEVADVVSWNTVVFGYAKCGEIGNARRVFDEMPHRNGVSWSVMVGAYAAAGE 206
Query: 92 MDHAMKLIDLMPL--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
+D A ++ D MP +++ ++N+M++G+ R G + AR +FD++P +++VSWN+++ Y
Sbjct: 207 LDVAREMFDRMPAIGRNIITWNLMVTGFGRHGLLPLARKMFDEMPIRNIVSWNAMLRGYA 266
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVT 208
GEM+ A E+F M K+V++W M++GY ++ Y + ++LF M++ G+++P+ +T+
Sbjct: 267 MNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELFRTMQSHGDIRPNEVTMV 326
Query: 209 SVLSACANLGSLETGARIHVYATDNG--LASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
SVLSACA+L +LE G HV+ + L + + ALIDMYAKCG + + ++F+
Sbjct: 327 SVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLGAALIDMYAKCGRTDLATKIFHSLD 386
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K+V WNA+I GLA++ + + +M S K DDITF+ +L+AC+HAGLV EG +
Sbjct: 387 QKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDDITFVSVLTACAHAGLVDEGRQ 446
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
F M GV +L+HYGCMVDLLGRA LLD A ELI MP P +LG
Sbjct: 447 YFQSMSSACGVQPELKHYGCMVDLLGRAGLLDEAEELIRGMPMAPDVKLLG 497
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 47/459 (10%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + ++FP +LKA S G +HG +K GF +V + L++MY ++DA+
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAY 177
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
+F K +++D SC QM+ + D +V +NIMI G R+
Sbjct: 178 SLFCK----------NVVDFDGSC-QMELDKRKQD----GNVVLWNIMIDGQVRL----- 217
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
G+++ A +F +M ++V++WN M++GY ++ +
Sbjct: 218 --------------------------GDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHF 251
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
IE ++LF EM++ N+ P+Y+T+ SVL A A +G+LE G IH+YA N + + +AL
Sbjct: 252 IEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSAL 311
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
+DMY+KCGSI+++L+VF ++ W+A+I A+HG A+ M + V +D
Sbjct: 312 VDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPND 371
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+ +IG+LSACSHAGLV+EG FS M K G+ ++EHYGCMVDLLGRA L+ A ELI
Sbjct: 372 VAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIR 431
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
MP EP + I ALL AC +H++L++G+RVA+ + + + S G + +NLYAS G WE
Sbjct: 432 NMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDS-GSYVALSNLYASLGNWE 490
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R R M I K G S IE++G H+FL H
Sbjct: 491 AVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSH 529
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 119/296 (40%), Gaps = 67/296 (22%)
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS---QLY 185
I D + A +V+ + + ++ +++ A +F++M N WNT++ + L
Sbjct: 48 IQDPLTAAEVIKFCAF-----SSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQ 102
Query: 186 IEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E + LF M G VKP+ T SVL ACA L G +IH G + +
Sbjct: 103 SEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISN 162
Query: 245 LIDMYAKCGSIEQSLEVFYKSQV------------------------------------- 267
L+ MY C +E + +F K+ V
Sbjct: 163 LVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKS 222
Query: 268 ----------KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ V WN MI G A +G+ A+ L EM S + + +T + +L A +
Sbjct: 223 AKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIAR 282
Query: 318 AGLVQEG--CELFS---RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G ++ G L++ ++E D + L VD+ + +D+A+++ E +P
Sbjct: 283 IGALELGKWIHLYAGKNKVEIDDVLGSAL------VDMYSKCGSIDKALQVFETLP 332
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 255/468 (54%), Gaps = 36/468 (7%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H + I+T +V L+++ +L +D A+ VF + ++ + +M+D F S G+
Sbjct: 48 IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGR 107
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISG----------------------------------- 116
+ L M V N +I+
Sbjct: 108 SADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEI 167
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y + G++ +A+ +FD++P +D V+ +I Y+ G +++A E+F+ + +K+ + W M+
Sbjct: 168 YGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMI 227
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G +R++ + ++LF EM+ NV + T VLSAC++LG+LE G +H + + +
Sbjct: 228 DGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRME 287
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ ALI+MY++CG I ++ VF + KDV +N MI GLA+HG A+ +M
Sbjct: 288 LSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDM 347
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ + + +T + LL+ACSH GL+ G E+F+ M++ F V ++EHYGC+VDLLGR
Sbjct: 348 VNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGR 407
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L+ A IE +P EP +LG LLSAC IH ++E+G+++AK + N S G ++ +N
Sbjct: 408 LEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDS-GTYVLLSN 466
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
LYAS G+W+E+ R M D+GI K G S IEV+ H+FL G I H
Sbjct: 467 LYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAH 514
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/377 (21%), Positives = 171/377 (45%), Gaps = 49/377 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V DNY +LKA + + +H Q +K GF V ++++YG + +A
Sbjct: 123 VLPDNYVITSVLKACDLK----VCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAK 178
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
K+F++MP++D +A M++ ++ CG + A++L + +KD + MI G R +++
Sbjct: 179 KMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNK 238
Query: 126 ARYIFDKVPAKDVVS----------------------W-----------------NSLIL 146
A +F ++ ++V + W N+LI
Sbjct: 239 ALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALIN 298
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y+ G++ +A +F+ M K+VI++NTM++G +E ++ F +M +P+ +T
Sbjct: 299 MYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVT 358
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATT--ALIDMYAKCGSIEQSLEVFYK 264
+ ++L+AC++ G L+ G + + P ++D+ + G +E++
Sbjct: 359 LVALLNACSHGGLLDIGLEV-FNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIEN 417
Query: 265 SQVK-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
++ D ++ +HG K+ + +S D T++ L + + +G +E
Sbjct: 418 IPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFES-ENPDSGTYVLLSNLYASSGKWKE 476
Query: 324 GCELFSRMEKDFGVTRK 340
E+ M +D G+ ++
Sbjct: 477 STEIRESM-RDSGIEKE 492
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 272/473 (57%), Gaps = 22/473 (4%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D++++P+L K L + +G M+ G K +V A + M+ S +++A K
Sbjct: 78 RPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARK 137
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYARIGK 122
VF++ P +D+++WN +++ + G+ + A+++ +M + V ++ ++S A +G
Sbjct: 138 VFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGD 197
Query: 123 IHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMF----KKMLV-------- 166
++ + ++ V A + N+L+ ++ G++ +A +F K+ +V
Sbjct: 198 LNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDME 257
Query: 167 -KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
K+V+ WN M+ G ++++ + + LF EM+ N PD +T+ LSAC+ LG+L+ G
Sbjct: 258 EKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIW 317
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
IH Y + L+ N T+L+DMYAKCG+I ++L VF+ Q ++ + A+I GLALHG
Sbjct: 318 IHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGD 377
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
A+ EM D+ + D+ITFIGLLSAC H G++Q G + FS+M+ F + +L+HY
Sbjct: 378 ASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYS 437
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
MVDLLGRA LL+ A +L+E+MP E ++ GALL C +H ++++G++ AK + + +
Sbjct: 438 IMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKL-LELDP 496
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
G ++ +Y WE+A R R MMN+ G+ K G S IEVNG +F+
Sbjct: 497 SDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVSEFI 549
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 161/468 (34%), Positives = 245/468 (52%), Gaps = 9/468 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV + +++P LL+ +G +H +IKTGF +YV L+ MY
Sbjct: 336 MVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGW 395
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+D A ++ E + KD+++W SM+ + A++ M L + NI IS
Sbjct: 396 LDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISA 455
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A I + + I +V + DV WN+L+ Y G ++A +F+ + K+ ITW
Sbjct: 456 CAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITW 515
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N MV+G+ +S LY E +++F +M VK + T S +SA ANL ++ G +IH
Sbjct: 516 NGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIK 575
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S ALI +Y KCGSIE + F++ ++ WN +I + HG+G AL L
Sbjct: 576 TGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDL 635
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M +K +D+TFIG+L+ACSH GLV+EG F M + G+ + +HY C+VD+LG
Sbjct: 636 FDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILG 695
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LDRA + +E MP + LLSAC +H+++EIG+ AK + + S +
Sbjct: 696 RAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDS-ASYV 754
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ +N YA G+W + R MM D G+ K G S IEV H F G
Sbjct: 755 LLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVG 802
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 166/347 (47%), Gaps = 9/347 (2%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G ++H Q K G C V AL+ +Y + A +VF +MP D + +N+++ A
Sbjct: 162 GRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQ 221
Query: 89 CGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKDVVS 140
CG + A+++ + M L D + +++ A IG ++ + Y+ + D +
Sbjct: 222 CGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYII 281
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
SL+ Y G + +A E+FK NV+ WN M+ Y + + DLF +M A V
Sbjct: 282 EGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGV 341
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+P+ T +L C G + G +IH+ + G S+ + + LIDMY+K G ++++
Sbjct: 342 RPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARR 401
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+ + KDV W +MI G H + AL+ +M + D+I +SAC+
Sbjct: 402 ILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKA 461
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+++G ++ SR+ G + + + +V+L R A L EA+
Sbjct: 462 MRQGQQIHSRVYVS-GYSADVSIWNALVNLYARCGRSKEAFSLFEAI 507
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/440 (22%), Positives = 192/440 (43%), Gaps = 45/440 (10%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
++H + I G L+ +Y + A +VFE++ +D ++W +ML +A G
Sbjct: 63 VIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122
Query: 91 QMDHAMKLIDLMPLKDVTS----FNIMISGYARIGKIHSARYIFDKV----PAKDVVSWN 142
+ A+ L M V + ++S + R + +V + V N
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+LI Y G + A +F +M + +T+NT+++ + + +++F+EM+ P
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D +T+ S+L+ACA++G L G ++H Y G++ + +L+D+Y KCG I ++LE+F
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIF 302
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+V WN M++ + L +M + V+ ++ T+ LL C++AG +
Sbjct: 303 KSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEIN 362
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE------------ 370
G E + G + G ++D+ + LD+A ++E + +
Sbjct: 363 LG-EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGY 421
Query: 371 ----------------------PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
P L + +SAC + + G ++ V S Y +D
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYV-SGYSAD 480
Query: 409 GELM-MFANLYASCGQWEEA 427
+ NLYA CG+ +EA
Sbjct: 481 VSIWNALVNLYARCGRSKEA 500
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 162/502 (32%), Positives = 261/502 (51%), Gaps = 41/502 (8%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E G+ D ++F LL + G +H I+ ++ V+T L+ MY ++
Sbjct: 472 EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLN 531
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG-- 116
A ++F +M E++ +WNSM++ + G+ A++L M L D S + M+S
Sbjct: 532 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCV 591
Query: 117 ---------------------------------YARIGKIHSARYIFDKVPAKDVVSWNS 143
YA+ G + A ++D+ KDV+ N
Sbjct: 592 SLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNV 651
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
++ A+ N+G A +F +M +N WN+++ GY L E + F EM +++ D
Sbjct: 652 MVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYD 711
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NPHATTALIDMYAKCGSIEQSLEVF 262
LT+ ++++ C++L +LE G ++H G + + TAL+DMY+KCG+I ++ VF
Sbjct: 712 VLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVF 771
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
K++ WNAMI G + HG AL L EM + +++TF+ +LSACSH GLV+
Sbjct: 772 DNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVE 831
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EG +F+ M++D+ + K EHY CMVDLLGRA L+ A E +E MP EP S GALL A
Sbjct: 832 EGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGA 891
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C +H+D+++G R+A + + + G ++ +N+YA+ G+W+E R MM G+ K
Sbjct: 892 CRVHKDMDMG-RLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKD 950
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
G S IE+N F AG H
Sbjct: 951 PGVSWIEINSEIQIFHAGSKTH 972
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 190/407 (46%), Gaps = 40/407 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE G ++ ++ +L A+ L+ G LHG ++ + + +AL+ MY
Sbjct: 368 MQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGM 427
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD-----VTSFNIMIS 115
+++A +VF + E++ +++N++L + G+ + A++L M +D +F +++
Sbjct: 428 VEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT 487
Query: 116 GYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
A + R I + K+++ L+ Y+ G + A E+F +M +N +
Sbjct: 488 LCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS 547
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN+M+ GY ++ E + LF +M+ +KPD +++S+LS+C +L + G +H +
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 607
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF-------------------- 271
N + L+DMYAKCGS++ + +V+ ++ KDV
Sbjct: 608 RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKN 667
Query: 272 -----------CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
WN+++ G A G + EM +S ++ D +T + +++ CS
Sbjct: 668 LFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPA 727
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
++ G +L S + K V + +VD+ + + +A + + M
Sbjct: 728 LEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNM 774
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 167/367 (45%), Gaps = 13/367 (3%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD---AFKVFEKMPEKDIIAWNSMLDA 85
G +H Q I G+ Y+ T +L +Y C+DD A K+FE+MPE+++ AWN+M+ A
Sbjct: 90 GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149
Query: 86 FASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----D 137
+A ++L M D +F +I + + R + V +
Sbjct: 150 YARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCN 209
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
+ +L+ Y G M+ A ++ +V+TWN ++ GY++ + E +FD M
Sbjct: 210 LFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLK 269
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V PD T S L C L S + G ++H G + ALIDMYAKC E
Sbjct: 270 IGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEES 329
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
L+VF + ++ WN++I A G+ AL L M +S K++ +L A +
Sbjct: 330 CLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAG 389
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+ +G EL + ++ + + +VD+ + +++ A ++ ++ E E
Sbjct: 390 LADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYN 447
Query: 378 ALLSACV 384
ALL+ V
Sbjct: 448 ALLAGYV 454
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 206/479 (43%), Gaps = 56/479 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G +D ++FP ++KA + L +K G +++V AL+ Y
Sbjct: 166 MRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGW 225
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+DDA +++ ++ WN+++ + + A + D M V N + R+
Sbjct: 226 MDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRV 285
Query: 121 GKIHSARYIFDKVPAK--------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+R +V +K D N+LI Y + E ++F +M +N +TW
Sbjct: 286 CGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTW 345
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N++++ + + + + LF M+ K + + S+L A A L + G +H +
Sbjct: 346 NSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR 405
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N L S+ +AL+DMY+KCG +E++ +VF ++ +NA++ G G AL+L
Sbjct: 406 NLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALEL 465
Query: 293 LGEM-NDSCVKADDITFIGLLSACS-----------HAGLVQEGC--------------- 325
+M ++ ++ D TF LL+ C+ HA L++
Sbjct: 466 YHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYS 525
Query: 326 ---------ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF---EPTE 373
E+F+RM + R + M++ + A+ L + M +P
Sbjct: 526 ECGRLNYAKEIFNRMAE-----RNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDC 580
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWR 431
L ++LS+CV D + G + + ++ +G L ++ ++YA CG + A W+
Sbjct: 581 FSLSSMLSSCVSLSDSQKGRELHNFI-VRNTMEEEGILQVVLVDMYAKCGSMDYA--WK 636
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
A +V P L +S++ C + S + G IH NG + + T ++ +YA+ G ++
Sbjct: 66 ASDVNP--LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123
Query: 257 Q---SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+ ++F + +++ WN MIL A L+L G M S +D TF ++
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIK 183
Query: 314 AC 315
AC
Sbjct: 184 AC 185
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 165/502 (32%), Positives = 264/502 (52%), Gaps = 47/502 (9%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
+ YSF L A L+ +G+ +H K+ + VY+ +AL+ MY + A + F
Sbjct: 150 NEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAF 209
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSF-------- 110
+ M ++I++WNS++ + G A+++ D + L V S
Sbjct: 210 DGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIR 269
Query: 111 ----------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
N ++ YA+ +++ AR +FD++P ++VVS S++ Y
Sbjct: 270 EGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGY 329
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
A ++ A MF M+ KNV++WN ++ GY ++ E V LF +K ++ P + T
Sbjct: 330 ARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFG 389
Query: 209 SVLSACANLGSLETGARIHVYATDNGL------ASNPHATTALIDMYAKCGSIEQSLEVF 262
++L+ACANL L+ G + H +G S+ +LIDMY KCG +E VF
Sbjct: 390 NLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVF 449
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ +DV WNAMI+G A +GYG AL++ +M S K D +T IG+LSACSHAGLV+
Sbjct: 450 ERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVE 509
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EG F M + G+ +H+ CMVDLLGRA LD A +LI+ MP +P + G+LL+A
Sbjct: 510 EGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAA 569
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C +H ++E+G VA+ + + + L+ G ++ +N+YA G+W++ R R M G++K
Sbjct: 570 CKVHGNIELGKYVAEKL-MEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQ 628
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
G S IE+ H F+ H
Sbjct: 629 PGCSWIEIQSRVHVFMVKDKRH 650
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 111/464 (23%), Positives = 194/464 (41%), Gaps = 83/464 (17%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ F LL + S +H + IKT F +++Q L+ YG +DA KVF
Sbjct: 18 DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++MP+++ ++N++L G++D A + MP D S+N M+SG+A+ + A
Sbjct: 78 DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137
Query: 129 IFDKVPAKDVV----SWNS-----------------------------------LILAYT 149
F + ++D V S+ S L+ Y+
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G + A F M V+N+++WN+++T Y ++ + +++F M V+PD +T+ S
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLAS 257
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHAT-TALIDMYAKCGSIEQSLEVFYKSQVK 268
V+SACA+ ++ G +IH N AL+DMYAKC + ++ VF + ++
Sbjct: 258 VVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+V +M+ G A AA + M + V +++ L++ + G +E LF
Sbjct: 318 NVVSETSMVCGYARAASVKAARLMFSNMMEKNV----VSWNALIAGYTQNGENEEAVRLF 373
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQD 388
LL R + PT G LL+AC D
Sbjct: 374 L--------------------LLKRESIW-------------PTHYTFGNLLNACANLAD 400
Query: 389 LEIGDRVAKMVCAKSNYLSDGELM------MFANLYASCGQWEE 426
L++G + + + GE ++Y CG E+
Sbjct: 401 LKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVED 444
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 167/505 (33%), Positives = 259/505 (51%), Gaps = 45/505 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + ++ P +LKA ++ L HG IK G+ V+V ALL S + D+
Sbjct: 102 GILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDS 161
Query: 65 FKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSF--------- 110
++F +M P +++++WN+M+ A G+ A L M L DV +F
Sbjct: 162 RRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSK 221
Query: 111 --------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
N ++ Y + G + A FD +P K+VVSW S+
Sbjct: 222 EGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSM 281
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+ A G ++ A + F++M +N+I+WN M++ Y++ + E + L++ MK+ + PD
Sbjct: 282 LCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDE 341
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVF 262
+T+ VLS G L +G IH Y D+ S+P T +LIDMYA+CG ++ S+ +F
Sbjct: 342 VTLAGVLSVHGQNGDLASGRMIHCYIQDS--FSDPGVTVLNSLIDMYARCGQVDTSISLF 399
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ K+ WN +I LA+HG A+ M D+ITF+GLLSACSH GL++
Sbjct: 400 TEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLE 459
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
+G F M + V ++EHY CMVDLLGR L +A++LI+ MP +P + GAL+ A
Sbjct: 460 DGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGA 519
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C IH +EIG K + ++ G ++ +NL QWE+ R R +M D G K
Sbjct: 520 CRIHGHVEIGKLAIKQLLELEG-INGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKD 578
Query: 443 AGSSVIEVNGSYHKFLAGGIGHLSN 467
G S IE+N S H+F I H S+
Sbjct: 579 MGVSSIEINNSIHEFGVEDIRHESS 603
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 152/344 (44%), Gaps = 52/344 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV AD ++F LL + +G ++H + +G + + AL+ MYG
Sbjct: 200 MRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGD 259
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A + F+ MP K++++W SML A A G +D A + MP +++ S+N MIS Y +
Sbjct: 260 LWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQG 319
Query: 121 GK----------------------------IH-------SAR----YIFDKVPAKDVVSW 141
G+ +H S R YI D V
Sbjct: 320 GRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVL 379
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSLI Y G+++ + +F +M KN I+WN ++ E V F M +
Sbjct: 380 NSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFS 439
Query: 202 PDYLTVTSVLSACANLGSLETG-----ARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
PD +T +LSAC++ G LE G A H+Y + ++D+ + G +
Sbjct: 440 PDEITFVGLLSACSHGGLLEDGQYYFKAMRHIY----NVKPEVEHYACMVDLLGRHGHLA 495
Query: 257 QSLEVFYKSQVK-DVFCWNAMILGLALHGY---GYAALKLLGEM 296
+++++ +K DV W A+I +HG+ G A+K L E+
Sbjct: 496 KAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLEL 539
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 159/364 (43%), Gaps = 54/364 (14%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------IDLMPLKDVTSFNIMISGY 117
A ++F+++P+ D A+NS++ A+++ G A+ L ++P + F +
Sbjct: 60 ARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSR 119
Query: 118 ARIGK----IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV-KNVITW 172
AR + H V + V N+L+ + +AG + + +F +M +NV++W
Sbjct: 120 ARAAEHALATHGVAIKLGYV--RQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSW 177
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTM+ G ++ E LF EM+ V D T S+L C+ G+LE G +H +
Sbjct: 178 NTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLA 237
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+G + AL+DMY KCG + + F +K+V W +M+ LA HG AA
Sbjct: 238 SGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDW 297
Query: 293 LGEMND----------SC---------------------VKADDITFIGLLSACSHAGLV 321
+M + SC + D++T G+LS G +
Sbjct: 298 FEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDL 357
Query: 322 QEGCELFSRMEKDF---GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES---I 375
G + ++ F GVT ++D+ R +D +I L MP + T S I
Sbjct: 358 ASGRMIHCYIQDSFSDPGVTV----LNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVI 413
Query: 376 LGAL 379
+GAL
Sbjct: 414 IGAL 417
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 47/265 (17%)
Query: 114 ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
+SG A + AR +FD+VP D ++NSLI AY+N+G ++A + + +L + ++
Sbjct: 48 LSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGIL--- 104
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
P+ T+ VL AC+ + E H A
Sbjct: 105 ----------------------------PNEFTLPFVLKACSRARAAEHALATHGVAIKL 136
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALKL 292
G AL+ A GS+ S +F + + ++V WN MI G A G A L
Sbjct: 137 GYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACAL 196
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEG----CELF---SRMEKDFGVTRKLEHYG 345
EM V AD TF+ LL CS G ++ G C + SR++ G
Sbjct: 197 FREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILG--------N 248
Query: 346 CMVDLLGRARLLDRAIELIEAMPFE 370
+VD+ G+ L A + MP +
Sbjct: 249 ALVDMYGKCGDLWMAHRCFDVMPIK 273
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 162/466 (34%), Positives = 258/466 (55%), Gaps = 11/466 (2%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCID 62
GV D + + A + + +G +LH +IK V LL MY ++
Sbjct: 346 FGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLN 405
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYA 118
A +VFE+M EK +++W SM+ + G D A+KL D M + DV + +++ A
Sbjct: 406 SAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACA 465
Query: 119 RIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
G + S + + D + ++ + N+L Y G M+ A ++F M K+VI+WNT
Sbjct: 466 INGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNT 525
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ GY ++ L E + LF EM+ + KPD TV +L ACA+L +L+ G IH YA NG
Sbjct: 526 MIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNG 584
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
+ + + T A++DMY KCG + + +F KD+ W MI G +HGYG A+
Sbjct: 585 YSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFN 644
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+M + ++ D+++FI +L ACSH+GL+ EG ++F+ M+K+ + LEHY CMVDLL R
Sbjct: 645 QMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLART 704
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
L +A + I+AMP +P +I GALL C IH D+++ ++VA+ + + + G ++
Sbjct: 705 GNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERI-FELEPENTGYYVLL 763
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
AN+YA +WEE + R + G+ K G S IE+ G + F+AG
Sbjct: 764 ANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAG 809
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 11/377 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M ELG+ ++Y+F +LK ++ G +HG K GF + V +L+ Y R
Sbjct: 242 MLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRK 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-----TSFNIMIS 115
+ A K+F+++ ++D+I+WNSM+ + G D +++ M + V T N+ ++
Sbjct: 302 VRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVA 361
Query: 116 ----GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
G +GK+ + I ++V N+L+ Y+ G++ A +F++M K V++
Sbjct: 362 CANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVS 421
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W +M+TGY+R L + LFDEMK+ V PD VTS+L+ACA G+L++G +H Y
Sbjct: 422 WTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIR 481
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+N L +N + AL DMYAKCGS++ + +VF + KDV WN MI G + AL
Sbjct: 482 ENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALT 541
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L EM K D T +L AC+ + +G E+ ++ G + +VD+
Sbjct: 542 LFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRN-GYSEDKYVTNAVVDMY 599
Query: 352 GRARLLDRAIELIEAMP 368
+ LL A L + +P
Sbjct: 600 VKCGLLVLARSLFDMIP 616
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 139/283 (49%), Gaps = 9/283 (3%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL----IDLMPLKD 106
L+ MY + + VF+K+ E I WN M+ ++ G ++ L ++L +
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250
Query: 107 VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN----SLILAYTNAGEMEKAGEMFK 162
+F+ ++ +A + ++ R + + S+N SLI Y ++ A ++F
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
++ ++VI+WN+M++GY+++ L +++F +M V D T+ +V ACAN+G+L
Sbjct: 311 ELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLL 370
Query: 223 GARIHVYATDNG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G +H Y+ L L+DMY+KCG + ++ VF + K V W +MI G
Sbjct: 371 GKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYV 430
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
G A+KL EM V D +L+AC+ G ++ G
Sbjct: 431 REGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG 473
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 136/321 (42%), Gaps = 38/321 (11%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ Y G++++ +F K+ + WN M++ Y S Y E ++LF +M +KP+
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T +S+L A + +E G ++H G S +LI Y + + ++F
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ +DV WN+MI G +G +++ +M V D T + + AC++ G +
Sbjct: 311 ELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLL 370
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE------------- 370
G L S K + R++ ++D+ + L+ AI + E M +
Sbjct: 371 GKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYV 430
Query: 371 ---------------------PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
P + ++L+AC I+ +L+ G V + + N L
Sbjct: 431 REGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYI--RENNLETN 488
Query: 410 ELMMFA--NLYASCGQWEEAN 428
+ A ++YA CG ++A+
Sbjct: 489 SFVSNALTDMYAKCGSMKDAH 509
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 185 YIEVVDLFDEMK----AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ EV DL + M+ + N D S+L CA S+ G R+ +G+ +
Sbjct: 127 FCEVGDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGI 186
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
L+ MY KCG +++ VF K +F WN MI + G ++ L +M +
Sbjct: 187 LGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELG 246
Query: 301 VKADDITFIGLLSACSHAGLVQEG 324
+K + TF +L + V+EG
Sbjct: 247 IKPNSYTFSSILKCFAAVARVEEG 270
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 251/468 (53%), Gaps = 32/468 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ + D+ + +L A+ + S+ +G H I+ V V +++ MY
Sbjct: 375 MRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCER 434
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
IDDA KVF+ E+D++ WN++L A+A G A+KL M
Sbjct: 435 IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQ----------------- 477
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM----LVKNVITWNTMV 176
FD VP +V+SWNS+IL + G++ +A +MF +M N+ITW T++
Sbjct: 478 ---------FDSVPP-NVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLI 527
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+G +S E + F +M+ ++P ++TSVL AC ++ SL G IH + T +
Sbjct: 528 SGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFC 587
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ T+L+DMYAKCGSI+++ +VF+ K++ +NAMI ALHG AL L +
Sbjct: 588 LSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHL 647
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
++ D ITF +LSACSHAGLV EG LF+ M + +EHYGC+V LL R
Sbjct: 648 QKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGN 707
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
LD A+ LI MPF+P ILG+LL+AC H ++E+G+ ++K + K + G + +N
Sbjct: 708 LDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLF-KLEPSNSGNYVALSN 766
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ G+W E + R++M G+ K G S I+ G + F+AG H
Sbjct: 767 AYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSH 814
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 222/447 (49%), Gaps = 14/447 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE GV DN+ P +LKA G L +G +HG +K GF V+V ++L+ MYG
Sbjct: 173 MQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGV 232
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF+ M EK+++ WNSM+ + G A+ + M ++ + + ++ +
Sbjct: 233 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 292
Query: 121 ---------GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
GK A I + + +++ +S+I Y+ G +E A +F +ML K+V+T
Sbjct: 293 SANLDALIEGKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVT 351
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN +++ Y++ + +++ M++ N++ D +T++S+LSA A +++ G H Y
Sbjct: 352 WNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCI 411
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
L S+ ++IDMYAKC I+ + +VF + +D+ WN ++ A G ALK
Sbjct: 412 RRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALK 471
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M V + I++ ++ G V E ++FS+M+ G L + ++ L
Sbjct: 472 LFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQ-SLGFQPNLITWTTLISGL 530
Query: 352 GRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
++ AI + M P+ + + ++L AC L G + + LS
Sbjct: 531 AQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSV 590
Query: 409 GELMMFANLYASCGQWEEANRWRNMMN 435
++YA CG +EA + +MM+
Sbjct: 591 PVATSLVDMYAKCGSIDEAKKVFHMMS 617
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 25/355 (7%)
Query: 29 GLMLHGQTIKTG--FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF 86
G +H + +K G F + YV+T L+ Y + A ++F ++ +++ +W +++
Sbjct: 98 GQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQ 157
Query: 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR---------IGK-IHSARYIFDKVPAK 136
G + A+ M V N ++ + +GK +H Y+
Sbjct: 158 CRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHG--YVLKMGFGA 215
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
V +SL+ Y G +E A ++F M+ KNV+TWN+M+ GY+++ L E +D+F +M+
Sbjct: 216 CVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMR 275
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
++P +TV S LSA ANL +L G + H A N L + +++I+ Y+K G IE
Sbjct: 276 VEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIE 335
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA-- 314
+ VF + KDV WN +I H AL + M ++ D +T +LSA
Sbjct: 336 DAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASA 395
Query: 315 -CSHAGLVQEG-CELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
S+ L +EG C R +E D V + +D+ + +D A ++ ++
Sbjct: 396 VTSNIKLGKEGHCYCIRRNLESDVVVANSI------IDMYAKCERIDDARKVFDS 444
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG--LASNPHATTA 244
E V L EM+ + + +L C +L TG +IH NG A N + T
Sbjct: 62 ESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETK 121
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG--EMNDSCVK 302
L+ YAKC E ++ +F++ +V++VF W A I+GL G++ LLG EM ++ V
Sbjct: 122 LVVFYAKCDFPEVAVRLFHRLRVRNVFSW-AAIVGLQCR-MGFSEDALLGFIEMQENGVF 179
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGCMVDLLGRARLLDRAI 361
D+ +L AC L+ G + + K FG + +VD+ G+ +L+ A
Sbjct: 180 PDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVS--SSLVDMYGKCGVLEDAR 237
Query: 362 ELIEAM 367
++ ++M
Sbjct: 238 KVFDSM 243
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 157/384 (40%), Positives = 228/384 (59%), Gaps = 6/384 (1%)
Query: 86 FASCGQMDHAMKL----IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
F SCG + +L L D N +++ Y+ G + SAR +FDK+ K VVSW
Sbjct: 85 FKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSW 144
Query: 142 NSLILAYTNAGEMEKAGEMFKKM-LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
++I AY +A ++F++M + N+ WN M+ G++ Y E + LF+EM+ V
Sbjct: 145 ATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGV 204
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
K D +T+ S+L AC +LG+LE G +HVY + + TAL+DMYAKCGSIE ++
Sbjct: 205 KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMR 264
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF + KDV W A+I+GLA+ G G AL+L EM S VK D ITF+G+L+ACSHAGL
Sbjct: 265 VFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGL 324
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V EG F+ M +G+ +EHYGCMVD+LGRA + A +LI+ MP P +L LL
Sbjct: 325 VNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLL 384
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC IH +L + +R A+ + + + + G ++ +N+Y+S WE A + R +M + I
Sbjct: 385 SACRIHGNLVVAERAAQQL-IELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIK 443
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S IEV G H+F+ G + H
Sbjct: 444 KPPGCSAIEVGGVVHEFVKGDVSH 467
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 146/322 (45%), Gaps = 45/322 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D ++FP L K+ G+L C G LH + K GF Y+Q L+ MY + C+ A
Sbjct: 73 GLDPDRFTFPSLFKSCGVL---CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSA 129
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-KDVTSFNIMISGYARIGKI 123
KVF+KM K +++W +M+ A+A A+KL M + ++ +NIMI+G+
Sbjct: 130 RKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDY 189
Query: 124 HSARYIFDKVPAK----DVVSWNSLILA-------------------------------- 147
A +F+++ D V+ SL++A
Sbjct: 190 EEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTAL 249
Query: 148 ---YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
Y G +E A +F++M K+V+TW ++ G ++ ++LF EM+ VKPD
Sbjct: 250 VDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDA 309
Query: 205 LTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T VL+AC++ G + G A + G+ + ++DM + G I ++ ++
Sbjct: 310 ITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQ 369
Query: 264 K-SQVKDVFCWNAMILGLALHG 284
D F ++ +HG
Sbjct: 370 NMPMAPDYFVLVGLLSACRIHG 391
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 115/270 (42%), Gaps = 40/270 (14%)
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
D A +V++ +L ++G + A +F ++ T N+++ GY L + +
Sbjct: 9 DPFSASKIVAFCAL----HDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAIL 64
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
+ M + PD T S+ +C G L G ++H ++T G AS+ + L++MY+
Sbjct: 65 FYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYS 121
Query: 251 KCGSIEQSLEVFYKSQVKDV--------------------------------FCWNAMIL 278
CG + + +VF K K V FCWN MI
Sbjct: 122 NCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMIN 181
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
G AL L EM S VK D +T LL AC+H G ++ G L +EK+ +
Sbjct: 182 GHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE-KIE 240
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ +VD+ + ++ A+ + + MP
Sbjct: 241 VDVALGTALVDMYAKCGSIESAMRVFQEMP 270
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 35/230 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + LL A L + +G LH K V + TAL+ MY
Sbjct: 199 MQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGS 258
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A +VF++MPEKD++ W +++ A CGQ A++L M + +V
Sbjct: 259 IESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKP----------- 307
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-----NVITWNTM 175
D +++ ++ A ++AG + + F M K ++ + M
Sbjct: 308 ----------------DAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCM 351
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V R+ E DL M + PDY + +LSAC G+L R
Sbjct: 352 VDMLGRAGRIAEAEDLIQNMP---MAPDYFVLVGLLSACRIHGNLVVAER 398
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 169/511 (33%), Positives = 259/511 (50%), Gaps = 52/511 (10%)
Query: 5 GVHADN-----YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
+HAD+ YSF L A S G +HG ++ V++++AL+ MY
Sbjct: 141 AMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCE 200
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTS 109
+DA +VF+ MPE+++++WNS++ + G + A+ L D + L V S
Sbjct: 201 RPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMS 260
Query: 110 F------------------------------NIMISGYARIGKIHSARYIFDKVPAKDVV 139
N ++ YA+ G+ AR IFD +P++ +V
Sbjct: 261 ACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIV 320
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
S S++ Y + +E A +F +M+ KNVI WN ++ Y ++ E + LF ++K +
Sbjct: 321 SETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDS 380
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYAT------DNGLASNPHATTALIDMYAKCG 253
+ P + T +VL+AC N+ L+ G + HV+ D G S+ +L+DMY K G
Sbjct: 381 IWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 440
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
SI+ +VF + +D WNAMI+G A +G AL L M S D +T IG+LS
Sbjct: 441 SIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLS 500
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
AC H+GLV EG F M +D G+T +HY CMVDLLGRA L A ELI MP EP
Sbjct: 501 ACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDS 560
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
+ +LL AC +H+++E+G+ A + + + + G ++ +N+YA G+W E R R
Sbjct: 561 VLWASLLGACRLHKNVELGEWTAGRLF-ELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRS 619
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M D G+ K G S IE+ + FLA H
Sbjct: 620 MKDRGVSKQPGCSWIEIGRKMNVFLARDKRH 650
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 195/446 (43%), Gaps = 84/446 (18%)
Query: 2 QELGVHADNYSFPL--LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
QEL H S PL LL++A LS + H + +K+ G ++ L+ Y L
Sbjct: 11 QELVAHL-RASSPLADLLRSAPNLSGARAA---HARILKSPVAGETFLLNTLVSTYARLG 66
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ DA +VF+++P ++ ++N++L A+A G+ D A L + +P D S+N +++ AR
Sbjct: 67 RLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALAR 126
Query: 120 IGKIHSA---RY-------------------------------------IFDKVP-AKDV 138
G+ H+A R+ + + P A DV
Sbjct: 127 HGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDV 186
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
++L+ Y E A +F M +NV++WN+++T Y ++ E + LF EM A
Sbjct: 187 HIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAA 246
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCG---- 253
PD +T++SV+SACA L + G ++H + + L + AL+DMYAKCG
Sbjct: 247 GFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWE 306
Query: 254 ---------------------------SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
++E + VF + K+V WN +I A +G
Sbjct: 307 ARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEE 366
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK-----DFGVTRKL 341
A++L ++ + T+ +L+AC + +Q G + + K DFG +
Sbjct: 367 EEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDV 426
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAM 367
+VD+ + +D ++ E M
Sbjct: 427 FVGNSLVDMYLKTGSIDDGAKVFERM 452
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 165/443 (37%), Positives = 257/443 (58%), Gaps = 35/443 (7%)
Query: 47 VQTALLKMYGSLRCIDD------AFKVFEKMPEKDIIAWN----------SMLDAFASCG 90
V +++ YG + DD A ++++M K I+ N S L + G
Sbjct: 89 VYNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIVPNNLTFPFLVKGCSRLQYGGTVG 148
Query: 91 QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN 150
++ HA ++ L DV N +IS + G +AR +FD++ +DVVSWNS+++ Y
Sbjct: 149 EVIHA-HVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLR 207
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK--AGN--VKPDYLT 206
GE+E A +F+KM +N+ITWN+++TG +++ E +++F EM+ +G+ VKPD +T
Sbjct: 208 NGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKIT 267
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ SVLSACA LGS++ G +H Y N + + TAL++MY KCG ++Q++E+F
Sbjct: 268 IASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMP 327
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
KD W AMI ALHG+G A EM + VK + +TF+GLLSACSH+GLV++G
Sbjct: 328 EKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRC 387
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F M++ + + ++ HY CMVD+L RARL D A+ LI +MP +P + GALL C +H
Sbjct: 388 CFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMH 447
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGE------LMMFANLYASCGQWEEANRWRNMMNDTGI- 439
++++G++VA +YL D E + ++Y G+++ A R RN M + GI
Sbjct: 448 GNIKLGEKVA-------HYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIE 500
Query: 440 VKTAGSSVIEVNGSYHKFLAGGI 462
K G S+IE+NG +F G I
Sbjct: 501 TKIPGCSIIEINGVVQEFSVGEI 523
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 151/330 (45%), Gaps = 46/330 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILS-SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
M G+ +N +FP L+K L +G ++H +K GF V+V +L+ ++ +
Sbjct: 119 MLNKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFG 178
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+A KVF++M +D+++WNSM+ + G+++ A+ L M +++ ++N +I+G +
Sbjct: 179 LSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQ 238
Query: 120 IGKIHSARYIFDKV----------PAK--------------------------------- 136
G + IF ++ P K
Sbjct: 239 AGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIEC 298
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
DVV +L+ Y G++++A E+F M K+ W M++ + + D F EM+
Sbjct: 299 DVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEME 358
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
VKP+++T +LSAC++ G +E G V + + ++D+ ++
Sbjct: 359 KAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLF 418
Query: 256 EQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
+++L + +K DV+ W A++ G +HG
Sbjct: 419 DEALFLIRSMPMKPDVYVWGALLGGCQMHG 448
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 251/468 (53%), Gaps = 32/468 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ + D+ + +L A+ + S+ +G H I+ V V +++ MY
Sbjct: 1470 MRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCER 1529
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
IDDA KVF+ E+D++ WN++L A+A G A+KL M
Sbjct: 1530 IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQ----------------- 1572
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM----LVKNVITWNTMV 176
FD VP +V+SWNS+IL + G++ +A +MF +M N+ITW T++
Sbjct: 1573 ---------FDSVPP-NVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLI 1622
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+G +S E + F +M+ ++P ++TSVL AC ++ SL G IH + T +
Sbjct: 1623 SGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFC 1682
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ T+L+DMYAKCGSI+++ +VF+ K++ +NAMI ALHG AL L +
Sbjct: 1683 LSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHL 1742
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
++ D ITF +LSACSHAGLV EG LF+ M + +EHYGC+V LL R
Sbjct: 1743 QKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGN 1802
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
LD A+ LI MPF+P ILG+LL+AC H ++E+G+ ++K + K + G + +N
Sbjct: 1803 LDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLF-KLEPSNSGNYVALSN 1861
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ G+W E + R++M G+ K G S I+ G + F+AG H
Sbjct: 1862 AYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSH 1909
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 222/447 (49%), Gaps = 14/447 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE GV DN+ P +LKA G L +G +HG +K GF V+V ++L+ MYG
Sbjct: 1268 MQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGV 1327
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF+ M EK+++ WNSM+ + G A+ + M ++ + + ++ +
Sbjct: 1328 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 1387
Query: 121 ---------GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
GK A I + + +++ +S+I Y+ G +E A +F +ML K+V+T
Sbjct: 1388 SANLDALIEGKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVT 1446
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN +++ Y++ + +++ M++ N++ D +T++S+LSA A +++ G H Y
Sbjct: 1447 WNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCI 1506
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
L S+ ++IDMYAKC I+ + +VF + +D+ WN ++ A G ALK
Sbjct: 1507 RRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALK 1566
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M V + I++ ++ G V E ++FS+M+ G L + ++ L
Sbjct: 1567 LFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQ-SLGFQPNLITWTTLISGL 1625
Query: 352 GRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
++ AI + M P+ + + ++L AC L G + + LS
Sbjct: 1626 AQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSV 1685
Query: 409 GELMMFANLYASCGQWEEANRWRNMMN 435
++YA CG +EA + +MM+
Sbjct: 1686 PVATSLVDMYAKCGSIDEAKKVFHMMS 1712
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 25/355 (7%)
Query: 29 GLMLHGQTIKTG--FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF 86
G +H + +K G F + YV+T L+ Y + A ++F ++ +++ +W +++
Sbjct: 1193 GQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQ 1252
Query: 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR---------IGK-IHSARYIFDKVPAK 136
G + A+ M V N ++ + +GK +H Y+
Sbjct: 1253 CRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHG--YVLKMGFGA 1310
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
V +SL+ Y G +E A ++F M+ KNV+TWN+M+ GY+++ L E +D+F +M+
Sbjct: 1311 CVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMR 1370
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
++P +TV S LSA ANL +L G + H A N L + +++I+ Y+K G IE
Sbjct: 1371 VEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIE 1430
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA-- 314
+ VF + KDV WN +I H AL + M ++ D +T +LSA
Sbjct: 1431 DAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASA 1490
Query: 315 -CSHAGLVQEG-CELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
S+ L +EG C R +E D V + +D+ + +D A ++ ++
Sbjct: 1491 VTSNIKLGKEGHCYCIRRNLESDVVVANSI------IDMYAKCERIDDARKVFDS 1539
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG--LASNPHATTA 244
E V L EM+ + + +L C +L TG +IH NG A N + T
Sbjct: 1157 ESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETK 1216
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG--EMNDSCVK 302
L+ YAKC E ++ +F++ +V++VF W A I+GL G++ LLG EM ++ V
Sbjct: 1217 LVVFYAKCDFPEVAVRLFHRLRVRNVFSW-AAIVGLQCR-MGFSEDALLGFIEMQENGVF 1274
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGCMVDLLGRARLLDRAI 361
D+ +L AC L+ G + + K FG + +VD+ G+ +L+ A
Sbjct: 1275 PDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVS--SSLVDMYGKCGVLEDAR 1332
Query: 362 ELIEAM 367
++ ++M
Sbjct: 1333 KVFDSM 1338
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 147/355 (41%), Positives = 222/355 (62%), Gaps = 5/355 (1%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM--LVKNVI 170
+I Y G + AR +FD++ KDV WN+L+ Y GEM++A + + M V+N +
Sbjct: 157 LIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEV 216
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +++GY +S E +++F M NV+PD +T+ +VLSACA+LGSLE G RI Y
Sbjct: 217 SWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYV 276
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G+ A+IDMYAK G+I ++L+VF ++V W +I GLA HG+G AL
Sbjct: 277 DHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEAL 336
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ M + V+ +D+TFI +LSACSH G V G LF+ M +G+ +EHYGCM+DL
Sbjct: 337 AMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDL 396
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR-VAKMVCAKSNYLSDG 409
LGRA L A E+I++MPF+ +I G+LL+A +H DLE+G+R +++++ + N + G
Sbjct: 397 LGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPN--NSG 454
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M+ ANLY++ G+W+E+ RNMM G+ K AG S IEV +KF++G + H
Sbjct: 455 NYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTH 509
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 158/318 (49%), Gaps = 43/318 (13%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D ++FP +LK A +S G +HGQ + GF V+V T L++MY S + DA K+F
Sbjct: 115 DTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMF 174
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYARIGKIHSA 126
++M KD+ WN++L + G+MD A L+++MP +++ S+ +ISGYA+ G+ A
Sbjct: 175 DEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEA 234
Query: 127 RYIFDKVPAKDV--------------------------------------VSWNSLIL-A 147
+F ++ ++V VS N+ ++
Sbjct: 235 IEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDM 294
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y +G + KA ++F+ + +NV+TW T++ G E + +F+ M V+P+ +T
Sbjct: 295 YAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTF 354
Query: 208 TSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
++LSAC+++G ++ G R+ + + G+ N +ID+ + G + ++ EV
Sbjct: 355 IAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMP 414
Query: 267 VK-DVFCWNAMILGLALH 283
K + W +++ +H
Sbjct: 415 FKANAAIWGSLLAASNVH 432
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 110/267 (41%), Gaps = 38/267 (14%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL---RSQLYIEVVDLF 192
+D ++ I A +NAG + A +F N NTM+ + + ++
Sbjct: 45 RDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVY 104
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
++ A KPD T VL + + G +IH G S+ H T LI MY C
Sbjct: 105 RKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSC 164
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G + + ++F + VKDV WNA++ G G A LL M C +++++ ++
Sbjct: 165 GGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMM--PCWVRNEVSWTCVI 222
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
S + +G E E+F RM L+E + EP
Sbjct: 223 SGYAKSGRASEAIEVFQRM-------------------------------LMENV--EPD 249
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMV 399
E L A+LSAC LE+G+R+ V
Sbjct: 250 EVTLLAVLSACADLGSLELGERICSYV 276
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D + +L A L S +G + G V + A++ MY I A
Sbjct: 246 VEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKAL 305
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYARI 120
VFE + E++++ W +++ A+ G A+ + + M DVT F ++S + +
Sbjct: 306 DVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVT-FIAILSACSHV 364
Query: 121 GKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
G + + +F+ + +K ++ + +I AG++ +A E+ K M K N W +
Sbjct: 365 GWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGS 424
Query: 175 MVTG 178
++
Sbjct: 425 LLAA 428
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 172/500 (34%), Positives = 261/500 (52%), Gaps = 46/500 (9%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF-CG-HVYVQTALLKMYGSLRCIDDA 64
H + +F LL+ G L +HG+ + G C ++ LL Y L DA
Sbjct: 251 HMNTQTFYFLLQKCGSLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDA 307
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID------LMP--------------L 104
KVF + DI++W ++ + Q A + L P
Sbjct: 308 QKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHR 367
Query: 105 KDVTSF-------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
KD+++ N +I Y+R G I A +F + KDV SW SL+
Sbjct: 368 KDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLL 427
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDY 204
+ ++E A +F +M ++N ++W M+TGY++ ++ I ++LF EM+A G P
Sbjct: 428 NGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTV 487
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+T+ +VLS CA++G+ + G+ +H Y L + AL+DMYAK G++ +L++F +
Sbjct: 488 ITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQE 547
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+DVF W MI GLALHG G AL+ +M+ S +++T + +LSACSHAGLV EG
Sbjct: 548 MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEG 607
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
LF +M + G+ K++HYGCMVDLLGRA LL A ELIE MP +P I +LLSAC+
Sbjct: 608 RSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACL 667
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
+H +L + + KM+ + DG ++ N+Y S +WE+A + R M D + K G
Sbjct: 668 VHGNLALAEMAGKMII-ELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPG 726
Query: 445 SSVIEVNGSYHKFLAGGIGH 464
S +EVNG H+FLA H
Sbjct: 727 CSWVEVNGVVHEFLAEDAVH 746
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 147/349 (42%), Gaps = 43/349 (12%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D++ + A G G ++HG + V AL+ MY I+ A
Sbjct: 349 GLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVA 408
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF+ M KD+ +W S+L+ F C ++ A ++ D MP+++ S+ MI+GY +
Sbjct: 409 CSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPI 468
Query: 125 SARYIFDKVPAK----------------------------------------DVVSWNSL 144
+F ++ A+ DV N+L
Sbjct: 469 PGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNAL 528
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+ Y +G + A ++F++M ++V +W TM++G ++ F +M P+
Sbjct: 529 MDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNE 588
Query: 205 LTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T+ SVLSAC++ G + G + +G+ ++D+ + G + ++ E+
Sbjct: 589 VTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIE 648
Query: 264 KSQVK-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
+K D W +++ +HG A ++ G+M DD +I L
Sbjct: 649 HMPIKPDSVIWRSLLSACLVHG-NLALAEMAGKMIIELEPDDDGVYILL 696
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 158/472 (33%), Positives = 253/472 (53%), Gaps = 22/472 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + +++P +LK L ++ +G +H Q +KTGF +VYV + L+ MY
Sbjct: 429 MQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGK 488
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+D A K+F ++ E D+++W +M+ + + A+ L M + + S NI IS
Sbjct: 489 LDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISA 548
Query: 117 YARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A I + R I + + D+ N+L+ Y G++ +A F ++ K+ ++W
Sbjct: 549 CAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSW 608
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N++V+G+ +S + E +++F +M ++ + T S +SA AN+ ++ G +IH
Sbjct: 609 NSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRK 668
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S + ALI +YAKCG+I D WN+MI G + HG G+ ALKL
Sbjct: 669 TGYDSETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKL 715
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M V + +TF+G+LSACSH GLV EG F M + + K EHY C+VDLLG
Sbjct: 716 FEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLG 775
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R+ LL RA +E MP +P + LLSAC +H++++IG+ A + S +
Sbjct: 776 RSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDS-ATYV 834
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N+YA G+W+ +R R MM D G+ K G S +EV+ S H F AG H
Sbjct: 835 LVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNH 886
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/479 (24%), Positives = 203/479 (42%), Gaps = 66/479 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSC-------IGLMLHGQTIKTGFCGHVYVQTALLKMYGS 57
G+ + Y +L I+ S+C G LHG +K GF YV AL+ +Y
Sbjct: 239 GLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSR 298
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIM 113
+ A ++F M ++D +++NS++ A G ++ A+ L M L D + +
Sbjct: 299 SGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASL 358
Query: 114 ISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+S A +G + + + Y D+V SL+ Y +++ A E F
Sbjct: 359 LSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF-------- 410
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+ G L + + +F +M+ + P+ T S+L C LG+ + G +IH
Sbjct: 411 -----LCYGQLDN--LNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQ 463
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
G N + ++ LIDMYAK G ++ +L++F + + DV W AMI G H A
Sbjct: 464 VLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEA 523
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL-----FSRMEKDFGVTRKL--- 341
L L EM D +K+D+I F +SAC+ + +G ++ S D + L
Sbjct: 524 LNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSL 583
Query: 342 --------EHYGC--------------MVDLLGRARLLDRAIELIEAMP---FEPTESIL 376
E Y +V ++ + A+ + M E
Sbjct: 584 YARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTF 643
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMM 434
G+ +SA ++ IG ++ M+ K+ Y S+ E+ LYA CG ++ + W +M+
Sbjct: 644 GSAVSAAANIANVRIGKQIHGMI-RKTGYDSETEVSNALITLYAKCGTIDDIS-WNSMI 700
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 184/417 (44%), Gaps = 52/417 (12%)
Query: 55 YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----F 110
+G L C A VF++MP + + WN + + F + M L M K+V F
Sbjct: 110 FGDLNC---AVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIF 166
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVS--------WNSLILAYTNAGEMEKAGEMFK 162
+++ G + G S R++ +++ AK + S N LI Y G + A ++F+
Sbjct: 167 AVVLRGCS--GNAVSFRFV-EQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFE 223
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+ ++ ++W M++G ++ E + LF ++ VLSAC + E
Sbjct: 224 NLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEF 269
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G ++H G +S + AL+ +Y++ G++ + ++F+ +D +N++I GLA
Sbjct: 270 GKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQ 329
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
GY AL L +MN C K D +T LLSAC+ G + G + S K G+T +
Sbjct: 330 QGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKA-GMTSDIV 388
Query: 343 HYGCMVDL----------------LGRARLLDRAIELIEAMPFE---PTESILGALLSAC 383
G ++DL G+ L+++ ++ M E P + ++L C
Sbjct: 389 VEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
++G+++ V + + ++YA G+ + A + + + +V
Sbjct: 449 TTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVV 505
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 132/315 (41%), Gaps = 36/315 (11%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y G++ A +F +M ++++ WN + ++ +L V LF M NV+ D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162
Query: 204 YLTVTSVLSACA-NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
VL C+ N S +IH +G S+ LID+Y K G + + +VF
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-DSCVKADDITF------------- 308
+ +D W AMI GL+ +GY A+ L ++ +C K + F
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGF 282
Query: 309 -------IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
L++ S +G + ++F M + R Y ++ L + ++RA+
Sbjct: 283 SSETYVCNALVTLYSRSGNLSSAEQIFHCMSQ-----RDRVSYNSLISGLAQQGYINRAL 337
Query: 362 ELIEAMPFE---PTESILGALLSACVIHQDLEIGDRV---AKMVCAKSNYLSDGELMMFA 415
L + M + P + +LLSAC L G + A S+ + +G L+
Sbjct: 338 ALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLL--- 394
Query: 416 NLYASCGQWEEANRW 430
+LY C + A+ +
Sbjct: 395 DLYVKCSDIKTAHEF 409
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 162/473 (34%), Positives = 247/473 (52%), Gaps = 44/473 (9%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE-KDIIAWNSMLDAFASCG 90
+H Q + G + + L+ Y R + A VF++ P I WN M+ A++
Sbjct: 74 IHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTP 133
Query: 91 QMDHAMKLIDLM------------------------PL------------------KDVT 108
++ L M P D+
Sbjct: 134 SSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIF 193
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
N +++ Y+ ++ A+ +FD++P +DV++W S++ Y GE+ +A E+F M +N
Sbjct: 194 VGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRN 253
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIH 227
++W MV GY+ + Y E + F++M + VKP+ + S+LSACA+LG+L+ G IH
Sbjct: 254 DVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIH 313
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
VY N + + + +TALIDMYAKCG I+ + VF +D+ W +MI GL++HG G
Sbjct: 314 VYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGA 373
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
L EM K DDIT +G+L+ CSH+GLV+EG +F M +G+ KLEHYGC+
Sbjct: 374 ECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCL 433
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
+DLLGRA L+ A E I++MP EP ALLSAC IH D+++G+R+ +
Sbjct: 434 IDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSH 493
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G ++ +NLYAS GQWE + R M+ G G S IE++G H+FLA
Sbjct: 494 GGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAA 546
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 43/320 (13%)
Query: 8 ADNYSFPLLLKAAGILSS-SCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
AD Y+F + A + G +HG +K G+ ++V +L+ MY + DA +
Sbjct: 154 ADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKR 213
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF++MP++D+I W S++ +A G++ A +L D+MP ++ S+ +M++GY + A
Sbjct: 214 VFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEA 273
Query: 127 RYIFDKVPAKDVVSWNSLILA--------------------------------------- 147
F+ + D V N +L
Sbjct: 274 LQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALID 333
Query: 148 -YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G ++ A +F + ++++TW +M++G L E + F EM A KPD +T
Sbjct: 334 MYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDIT 393
Query: 207 VTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ VL+ C++ G +E G I H G+ LID+ + G +E + E
Sbjct: 394 LLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSM 453
Query: 266 QVK-DVFCWNAMILGLALHG 284
++ DV W A++ +HG
Sbjct: 454 PMEPDVVAWRALLSACRIHG 473
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 245/452 (54%), Gaps = 32/452 (7%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D++SF LLKAA + GL LH + G H++V T L+ MY C+ A KVF
Sbjct: 105 DSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVF 164
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
D M ++ ++N +++ R + A
Sbjct: 165 -------------------------------DEMIEPNIVAWNAIVAACFRCEGVKDAEQ 193
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+F +P +++ SWN ++ YT AGE++ A E+F KM +K+ ++W+TM+ G+ + + +
Sbjct: 194 VFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDA 253
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
F E++ ++P+ +++T VLSACA G+ E G +H + +G ALID
Sbjct: 254 FAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDT 313
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
Y+KCG+++ + VF + W AMI G+A+HGYG A++L EM +S +K D ITF
Sbjct: 314 YSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITF 373
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
I +L ACSHAGLV GC FSRM +G+ +EHYGCMVDL GRA L +A + + MP
Sbjct: 374 ISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMP 433
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
P + + LL AC IH +L + +V + + ++ + + G+ ++ +N+YA G+W++
Sbjct: 434 ISPNDIVWRTLLGACSIHGNLYLAGQVKRQL-SELDPENSGDHVLLSNIYAVAGKWKDVA 492
Query: 429 RWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
R M + KT G S+IEVN + F+AG
Sbjct: 493 ALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAG 524
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 127/307 (41%), Gaps = 24/307 (7%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK-PDYL 205
A T + A +F + +V +NT++ G S + LF EM+ +V PD
Sbjct: 48 AVTLPDSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSF 107
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ +L A AN +L G ++H A GL S+ T LI MYA+C + + +VF +
Sbjct: 108 SFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEM 167
Query: 266 QVKDVFCWNAMILG-LALHGYGYAALKLLGEMNDSCVKADDITFIG-LLSACSHAGLVQE 323
++ WNA++ G A E C+ ++T +L+ + AG +Q
Sbjct: 168 IEPNIVAWNAIVAACFRCEGVKDA------EQVFRCMPIRNLTSWNIMLAGYTKAGELQL 221
Query: 324 GCELFSRMEKDFGVTRK-----LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
E+F +M V+ H G D R + R E M P E L
Sbjct: 222 AREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRR-----EGM--RPNEVSLTG 274
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANR-WRNMMND 436
+LSAC E G R+ KS +L + + Y+ CG + A + NM+
Sbjct: 275 VLSACAQAGAFEFG-RILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRR 333
Query: 437 TGIVKTA 443
+ + TA
Sbjct: 334 SAVSWTA 340
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 10/182 (5%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + S +L A + G +LHG K+GF + V AL+ Y +D A
Sbjct: 264 GMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMA 323
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI---------S 115
VF+ M + ++W +M+ A G + A++L + M ++ +I +
Sbjct: 324 RLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHA 383
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV-KNVITWNT 174
G +G + +R + + + ++ Y AG++++A + +M + N I W T
Sbjct: 384 GLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRT 443
Query: 175 MV 176
++
Sbjct: 444 LL 445
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 166/475 (34%), Positives = 258/475 (54%), Gaps = 10/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE G+ ++ + +L G + G LHG ++ F V V T LL MY +C
Sbjct: 201 MQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC 260
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-----TSFNIMIS 115
+ A K+F+ M ++ ++W++M+ + M A++L D M LKD + ++
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320
Query: 116 GYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
A++ + R YI D++ N+L+ Y G ++ A F M K+ ++
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVS 380
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
++ +V+G +++ + +F M+ + PD T+ VL AC++L +L+ G H Y
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 440
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G A++ ALIDMY+KCG I + EVF + D+ WNAMI+G +HG G AL
Sbjct: 441 VRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALG 500
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L ++ +K DDITFI LLS+CSH+GLV EG F M +DF + ++EH CMVD+L
Sbjct: 501 LFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDIL 560
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GRA L+D A I MPFEP I ALLSAC IH+++E+G+ V+K + + S G
Sbjct: 561 GRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPE-STGNF 619
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
++ +N+Y++ G+W++A R D G+ K G S IE+NG H F+ G HL
Sbjct: 620 VLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQ 674
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 161/337 (47%), Gaps = 17/337 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LGV + Y++P +LKA L + G+ +H G V+V TAL+ Y
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY-AR 119
+ +A ++F M +D++AWN+M+ + G D A++LI M + + + I G
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219
Query: 120 IGKI-----------HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+G+ + R FD VV L+ Y + A ++F M V+N
Sbjct: 220 VGEAKALGHGKALHGYCVRRSFD----NGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRN 275
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIH 227
++W+ M+ GY+ S E ++LFD+M + + P +T+ SVL ACA L L G ++H
Sbjct: 276 EVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLH 335
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
Y G + L+ MYAKCG I+ ++ F KD ++A++ G +G
Sbjct: 336 CYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAA 395
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
AL + M S + D T +G+L ACSH +Q G
Sbjct: 396 VALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 150/348 (43%), Gaps = 36/348 (10%)
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
KIH ++ D + L Y + ++ A +F ++ +VI WN ++ Y
Sbjct: 29 KIH--QHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ + +DL+ M V+P+ T VL AC+ L ++E G IH +A GL S+
Sbjct: 87 NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
TAL+D YAKCG + ++ +F +DV WNAMI G +L+G A++L+ +M + +
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206
Query: 302 KADDITFIGLLSACSHAGLVQEG------------------------------CELFSRM 331
+ T +G+L A + G C L++R
Sbjct: 207 CPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARK 266
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPTESILGALLSACVIHQ 387
D R + M+ + + A+EL + M +PT LG++L AC
Sbjct: 267 IFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLT 326
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
DL G ++ + L ++YA CG ++A R+ + MN
Sbjct: 327 DLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMN 374
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 164/380 (43%), Gaps = 17/380 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H +K V L ++Y S + A ++F+++P +I WN ++ A+A G
Sbjct: 30 IHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGP 89
Query: 92 MD------HAMKLIDLMPLKDVTSFNI-MISGYARIG---KIHSARYIFDKVPAKDVVSW 141
D H+M + + P K F + SG I +IHS +F DV
Sbjct: 90 FDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGL--ESDVFVC 147
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+L+ Y G + +A +F M ++V+ WN M+ G L + V L +M+ +
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC 207
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ T+ VL +L G +H Y + T L+DMYAKC + + ++
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-DSCVKADDITFIGLLSACSHAGL 320
F V++ W+AMI G AL+L +M + +T +L AC+
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI-LGAL 379
+ G +L + K G + ++ + + ++D AI + M P +S+ A+
Sbjct: 328 LSRGRKLHCYIIK-LGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXM--NPKDSVSFSAI 384
Query: 380 LSACVIHQDLEIGDRVAKMV 399
+S CV + + + + +M+
Sbjct: 385 VSGCVQNGNAAVALSIFRMM 404
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
VK +YL +L AC SL +IH + N ++ L +Y C + +
Sbjct: 7 VKNNYL---HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLAR 63
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F + V WN +I A +G A+ L M V+ + T+ +L ACS
Sbjct: 64 RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLL 123
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+++G E+ S K FG+ + +VD + +L A L +M
Sbjct: 124 AIEDGVEIHSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 259/473 (54%), Gaps = 11/473 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G + ++ LKA + +G LH IK ++ L+ MY
Sbjct: 275 MKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM 334
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
+DDA + ++ MP+KDIIAWN+++ ++ CG A+ L M +D+ T+ + ++
Sbjct: 335 MDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394
Query: 117 YARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
A + I + I + K D NSL+ Y +++A ++F++ ++++
Sbjct: 395 VASLQAIKVCKQIH-TISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVA 453
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
+ +M+T Y + E + L+ +M+ ++KPD +S+L+ACANL + E G ++HV+A
Sbjct: 454 YTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAI 513
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G + A+ +L++MYAKCGSIE + F + + + W+AMI G A HG+G AL+
Sbjct: 514 KFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALR 573
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M V + IT + +L AC+HAGLV EG + F +ME FG+ EHY CM+DLL
Sbjct: 574 LFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLL 633
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GR+ L+ A+EL+ ++PFE + GALL A IH+++E+G + AKM+ S G
Sbjct: 634 GRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKS-GTH 692
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ AN+YAS G WE + R M D+ + K G S IE+ + F+ G H
Sbjct: 693 VLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSH 745
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 166/345 (48%), Gaps = 9/345 (2%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH IK GF ++ L+ +Y R A K+ ++ E D+++W+S+L + G
Sbjct: 3 LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW--------NS 143
++ A+ + + M L V + + + KV VV+ N+
Sbjct: 63 VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L++ Y G ++ + +F ++ +NV++WN + + Y++S+L E V LF EM + P+
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+++ +L+ACA L + G +IH GL + + AL+DMY+K G IE ++ VF
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQ 242
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
DV WNA+I G LH AL LL EM S + + T L AC+ G +
Sbjct: 243 DIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKEL 302
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G +L S + K + G +VD+ + ++D A ++MP
Sbjct: 303 GRQLHSSLIKMDAHSDLFAAVG-LVDMYSKCEMMDDARRAYDSMP 346
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 117/486 (24%), Positives = 215/486 (44%), Gaps = 57/486 (11%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
LGV + ++FP +LKA + +G +HG + TGF +V L+ MY +DD
Sbjct: 76 LGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDD 135
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFAS---CGQ---MDHAMKLIDLMPLKDVTSFNIMISGY 117
+ ++F + E+++++WN++ + CG+ + M +MP + S +I+++
Sbjct: 136 SRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP--NEFSISIILNAC 193
Query: 118 ARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
A + + R I + D S N+L+ Y+ AGE+E A +F+ + +V++WN
Sbjct: 194 AGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWN 253
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
++ G + + L DEMK +P+ T++S L ACA +G E G ++H
Sbjct: 254 AIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKM 313
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
S+ A L+DMY+KC ++ + + KD+ WNA+I G + G A+ L
Sbjct: 314 DAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLF 373
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
+M + + T +L + + ++ C+ + G+ ++D G+
Sbjct: 374 SKMFSEDIDFNQTTLSTVLKSVASLQAIKV-CKQIHTISIKSGIYSDFYVINSLLDTYGK 432
Query: 354 ARLLDRAIELIEAMPFE----------------------------------PTESILGAL 379
+D A ++ E +E P I +L
Sbjct: 433 CNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSL 492
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA-----NLYASCGQWEEANRWRNMM 434
L+AC E G ++ + K ++ D +FA N+YA CG E+A+R + +
Sbjct: 493 LNACANLSAYEQGKQL-HVHAIKFGFMCD----IFASNSLVNMYAKCGSIEDADRAFSEI 547
Query: 435 NDTGIV 440
+ GIV
Sbjct: 548 PNRGIV 553
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 168/337 (49%), Gaps = 12/337 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ + +S ++L A L +G +HG +K G + AL+ MY
Sbjct: 174 MVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGE 233
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS----- 115
I+ A VF+ + D+++WN+++ D A+ L+D M +S
Sbjct: 234 IEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKA 293
Query: 116 ----GYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G+ +G+ +HS+ D D+ + L+ Y+ M+ A + M K++I
Sbjct: 294 CAAMGFKELGRQLHSSLIKMD--AHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDII 351
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN +++GY + +++ V LF +M + ++ + T+++VL + A+L +++ +IH +
Sbjct: 352 AWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTIS 411
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G+ S+ + +L+D Y KC I+++ ++F + +D+ + +MI + +G G AL
Sbjct: 412 IKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEAL 471
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
KL +M D+ +K D LL+AC++ ++G +L
Sbjct: 472 KLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 156/445 (35%), Positives = 247/445 (55%), Gaps = 10/445 (2%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
+G LHG IK F + + LL MY ++ A +VFE M E+ +++W SM+ +A
Sbjct: 269 LGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYA 328
Query: 88 SCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSAR----YIFDKVPAKDVV 139
G D +++L M + D+ + ++ A G + + + YI + D+
Sbjct: 329 REGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLF 388
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
N+L+ Y G M A +F +M VK++++WNTM+ GY ++ L E ++LF EM+ N
Sbjct: 389 VSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQY-N 447
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
KP+ +T+ +L ACA+L +LE G IH + NG + + H AL+DMY KCG++ +
Sbjct: 448 SKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLAR 507
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F KD+ W MI G +HGYG A+ EM +S ++ D+++FI +L ACSH+G
Sbjct: 508 LLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSG 567
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
L+ EG F+ M + + K EHY C+VDLL RA L +A + I+ MP EP +I GAL
Sbjct: 568 LLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGAL 627
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L C I+ D+++ ++VA+ V + + G ++ AN+YA +WEE + R + G+
Sbjct: 628 LCGCRIYHDVKLAEKVAEHV-FELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGL 686
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGH 464
K G S IE+ G H F+ G H
Sbjct: 687 RKNPGCSWIEIKGKVHIFVTGDSSH 711
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 170/315 (53%), Gaps = 18/315 (5%)
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIM 113
+R ++ A K+F+++ ++D+I+WNSM+ + S G + + L + M L D+ + +
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257
Query: 114 ISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
++G + G + R Y K++ N L+ Y+ +G + A ++F+ M ++V
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSV 317
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++W +M+ GY R L V LF EM+ + PD T+T++L ACA G LE G +H Y
Sbjct: 318 VSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNY 377
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+N + S+ + AL+DMYAKCGS+ + VF + QVKD+ WN MI G + + A
Sbjct: 378 IKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEA 437
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEHYGCMV 348
L L EM + K + IT +L AC+ ++ G E+ + ++ F + R + + +V
Sbjct: 438 LNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN--ALV 494
Query: 349 DL------LGRARLL 357
D+ LG ARLL
Sbjct: 495 DMYLKCGALGLARLL 509
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/409 (21%), Positives = 180/409 (44%), Gaps = 49/409 (11%)
Query: 50 ALLKMYGSLRCIDDAFKVFEKMPEKDI----IAWNSMLDAFASCGQMDHAMKLIDLMPLK 105
++L++ L+ I D ++ + D+ + + ++ + +CG + ++ D + +
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
V +N++++GYA+IG + +F ++ + +E A ++F ++
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGI-------------RRVESARKLFDELG 212
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
++VI+WN+M++GY+ + L + +DLF++M + D T+ SV++ C+N G L G
Sbjct: 213 DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRA 272
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H YA L+DMY+K G++ +++VF + V W +MI G A G
Sbjct: 273 LHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGL 332
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF-----SRMEKDFGVT-- 338
+++L EM + D T +L AC+ GL++ G ++ ++M+ D V+
Sbjct: 333 SDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNA 392
Query: 339 -----------------------RKLEHYGCMVDLLGRARLLDRAIELIEAMPF--EPTE 373
+ + + M+ + L + A+ L M + +P
Sbjct: 393 LMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNS 452
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
+ +L AC LE G + + L ++Y CG
Sbjct: 453 ITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCG 501
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 135/299 (45%), Gaps = 23/299 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTI-----KTGFCGHVYVQTALLKMY 55
M++ G+ D ++ +L A +C GL+ +G+ + + ++V AL+ MY
Sbjct: 343 MEKEGISPDIFTITTILHAC-----ACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMY 397
Query: 56 GSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM-- 113
+ DA VF +M KDI++WN+M+ ++ + A+ L M + M
Sbjct: 398 AKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMAC 457
Query: 114 -------ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
++ R +IH +I + D N+L+ Y G + A +F +
Sbjct: 458 ILPACASLAALERGQEIHG--HILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPE 515
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
K++++W M+ GY E + F+EM+ ++PD ++ S+L AC++ G L+ G
Sbjct: 516 KDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGF 575
Query: 227 HVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
+N + ++D+ A+ G++ ++ + ++ D W A++ G ++
Sbjct: 576 FNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIY 634
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 162/474 (34%), Positives = 264/474 (55%), Gaps = 19/474 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + D+Y+ P LL AA + + H K G GH + +L+ MY L
Sbjct: 143 MLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLITMYSYLDD 202
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A KVF+ +P +D+++WN+M+ A+ G ++ M V + +
Sbjct: 203 PGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDM----VKEGTVAPNVVTVA 258
Query: 121 GKIHSARYIFDKVPAKDVVSWN-------------SLILAYTNAGEMEKAGEMFKKMLVK 167
+ + R D V + V W+ +L+ Y GE+ +A +F ++ K
Sbjct: 259 VVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDK 318
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+++ WN M+TGY ++ + E + LF M+ ++PD +T+ VLSAC+ +G+LE G+ +
Sbjct: 319 DIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELD 378
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
YA+ GL SN + TAL+DMYAKCG +++++EVF K K+V WNA+I GLA +G G
Sbjct: 379 GYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGD 438
Query: 288 AALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A++ M N+ +K DDITFIG+LSAC HAGLV++G F+ + +F + K+EHY C
Sbjct: 439 EAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSC 498
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
MVDLL R+ L+ A + IE +P + +LGALL+AC +++EIG+RV + +
Sbjct: 499 MVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRII-QLEPT 557
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ ++ + +YAS + +++ + R +M + G+ KT G S +EV+G +F AG
Sbjct: 558 NSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVLEFYAG 611
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 109/292 (37%), Gaps = 35/292 (11%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++N + + S+ + + LF M ++PD T+ +L A A + H
Sbjct: 119 FSYNVAIRFFASSRPHTSL-RLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHAL 177
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
GL + H +LI MY+ + +VF +DV WNAM+ G
Sbjct: 178 LGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEV 237
Query: 290 LKLLGEM-NDSCVKADDITFIGLLSACSHAG------LVQE-------------GCELFS 329
++ +M + V + +T +L+AC G V+E G L
Sbjct: 238 GRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLG 297
Query: 330 RMEK-----------DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF---EPTESI 375
EK D + + + + M+ + + + AI L +M P +
Sbjct: 298 MYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKIT 357
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
L +LSAC LE+G + + Y + ++YA CG ++A
Sbjct: 358 LAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 162/474 (34%), Positives = 264/474 (55%), Gaps = 19/474 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + D+Y+ P LL AA + + H K G GH + +L+ MY L
Sbjct: 143 MLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLITMYSYLDD 202
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A KVF+ +P +D+++WN+M+ A+ G ++ M V + +
Sbjct: 203 PGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDM----VKEGTVAPNAVTVA 258
Query: 121 GKIHSARYIFDKVPAKDVVSWN-------------SLILAYTNAGEMEKAGEMFKKMLVK 167
+ + R D V + V W+ +L+ Y GE+ +A +F ++ K
Sbjct: 259 VVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDK 318
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+++ WN M+TGY ++ + E + LF M+ ++PD +T+ VLSAC+ +G+LE G+ +
Sbjct: 319 DIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELD 378
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
YA+ GL SN + TAL+DMYAKCG +++++EVF K K+V WNA+I GLA +G G
Sbjct: 379 GYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGD 438
Query: 288 AALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A++ M N+ +K DDITFIG+LSAC HAGLV++G F+ + +F + K+EHY C
Sbjct: 439 EAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSC 498
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
MVDLL R+ L+ A + IE +P + +LGALL+AC +++EIG+RV + +
Sbjct: 499 MVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRII-QLEPT 557
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ ++ + +YAS + +++ + R +M + G+ KT G S +EV+G +F AG
Sbjct: 558 NSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVLEFYAG 611
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 109/292 (37%), Gaps = 35/292 (11%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++N + + S+ + + LF M ++PD T+ +L A A + H
Sbjct: 119 FSYNVAIRFFASSRPHTSL-RLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHAL 177
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
GL + H +LI MY+ + +VF +DV WNAM+ G
Sbjct: 178 LGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEV 237
Query: 290 LKLLGEM-NDSCVKADDITFIGLLSACSHAG------LVQE-------------GCELFS 329
++ +M + V + +T +L+AC G V+E G L
Sbjct: 238 GRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLG 297
Query: 330 RMEK-----------DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF---EPTESI 375
EK D + + + + M+ + + + AI L +M P +
Sbjct: 298 MYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKIT 357
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
L +LSAC LE+G + + Y + ++YA CG ++A
Sbjct: 358 LAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 162/474 (34%), Positives = 264/474 (55%), Gaps = 19/474 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + D+Y+ P LL AA + + H K G GH + +L+ MY L
Sbjct: 143 MLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLITMYSYLDD 202
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A KVF+ +P +D+++WN+M+ A+ G ++ M V + +
Sbjct: 203 PGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDM----VKEGTVAPNVVTVA 258
Query: 121 GKIHSARYIFDKVPAKDVVSWN-------------SLILAYTNAGEMEKAGEMFKKMLVK 167
+ + R D V + V W+ +L+ Y GE+ +A +F ++ K
Sbjct: 259 VVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDK 318
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+++ WN M+TGY ++ + E + LF M+ ++PD +T+ VLSAC+ +G+LE G+ +
Sbjct: 319 DIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELD 378
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
YA+ GL SN + TAL+DMYAKCG +++++EVF K K+V WNA+I GLA +G G
Sbjct: 379 GYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGD 438
Query: 288 AALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A++ M N+ +K DDITFIG+LSAC HAGLV++G F+ + +F + K+EHY C
Sbjct: 439 EAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSC 498
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
MVDLL R+ L+ A + IE +P + +LGALL+AC +++EIG+RV + +
Sbjct: 499 MVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRII-QLEPT 557
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ ++ + +YAS + +++ + R +M + G+ KT G S +EV+G +F AG
Sbjct: 558 NSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVLEFYAG 611
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 109/292 (37%), Gaps = 35/292 (11%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++N + + S+ + + LF M ++PD T+ +L A A + H
Sbjct: 119 FSYNVAIRFFASSRPHTSL-RLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHAL 177
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
GL + H +LI MY+ + +VF +DV WNAM+ G
Sbjct: 178 LGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEV 237
Query: 290 LKLLGEM-NDSCVKADDITFIGLLSACSHAG------LVQE-------------GCELFS 329
++ +M + V + +T +L+AC G V+E G L
Sbjct: 238 GRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLG 297
Query: 330 RMEK-----------DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF---EPTESI 375
EK D + + + + M+ + + + AI L +M P +
Sbjct: 298 MYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKIT 357
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
L +LSAC LE+G + + Y + ++YA CG ++A
Sbjct: 358 LAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 223/357 (62%), Gaps = 3/357 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++ YA+ G + SA+ +FD++P + +VS ++I Y G +E A +F +M +++++W
Sbjct: 165 LVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSW 224
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N M+ GY + + + LF ++ A G KPD +TV + LSAC+ +G+LETG IHV+
Sbjct: 225 NVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVN 284
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ + N TALIDMY+KCGS+E+++ VF + KD+ WNAMI G A+HGY AL+
Sbjct: 285 SSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALR 344
Query: 292 LLGEMND-SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L EM + ++ DITFIG L AC+HAGLV EG ++F M +++G+ K+EHYGC+V L
Sbjct: 345 LFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSL 404
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L RA E+I+ M E + ++L +C +H + +G +A+ + + N + G
Sbjct: 405 LGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQ-NISNSGI 463
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
++ +N+YA G +E + RN+M + GIVK G S IE++ H+F AG HL +
Sbjct: 464 YVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKS 520
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 146/322 (45%), Gaps = 47/322 (14%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
++ + ++F +LK+ S G ++H +K G YV T L+ +Y + A
Sbjct: 124 INPNEFTFSSILKSCSTKS----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQ 179
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
KVF++MPE+ +++ +M+ +A G ++ A L D M +D+ S+N+MI GY++ G
Sbjct: 180 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSD 239
Query: 126 ARYIFDKV-----PAKDVVS------------------W-----------------NSLI 145
A +F K+ P D ++ W +LI
Sbjct: 240 ALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALI 299
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDY 204
Y+ G +E+A +F K+++ WN M+TGY + + LFDEM+ ++P
Sbjct: 300 DMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTD 359
Query: 205 LTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T L ACA+ G + G +I + G+ L+ + + G ++++ E+
Sbjct: 360 ITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIK 419
Query: 264 KSQVK-DVFCWNAMILGLALHG 284
++ D W++++ LHG
Sbjct: 420 NMNMEADSVLWSSVLGSCKLHG 441
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 44/214 (20%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITW----NTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
AY + G++ + +F + + ++ + NT L+ Q ++ L+ ++ + + P
Sbjct: 71 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFL----LYVQLLSSQINP 126
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+ T +S+L +C S ++G IH + GL +P+ T L+D+YAK G + + +VF
Sbjct: 127 NEFTFSSILKSC----STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVF 182
Query: 263 -----------------YKSQ--------------VKDVFCWNAMILGLALHGYGYAALK 291
Y Q +D+ WN MI G + HG+ AL
Sbjct: 183 DRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALM 242
Query: 292 LLGE-MNDSCVKADDITFIGLLSACSHAGLVQEG 324
L + + D K D+IT + LSACS G ++ G
Sbjct: 243 LFQKLLADGKPKPDEITVVAALSACSQIGALETG 276
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 253/458 (55%), Gaps = 47/458 (10%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PL 104
AL+ MY ID A ++F++ +++++ +N++L +A G A+ ++D M P
Sbjct: 271 NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR 330
Query: 105 KDVTSF-----------------------------------NIMISGYARIGKIHSARYI 129
D + N++I Y + GK A +
Sbjct: 331 PDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRV 390
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FD + K VVSWNSL + G++E A E+F ++ +N + WNTM++G ++ L+ + +
Sbjct: 391 FDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAI 450
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
+LF EM+ +K D +T+ + SAC LG+ E +H Y NG+ + TAL+DM+
Sbjct: 451 ELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMF 510
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
A+CG + +++VF K +DV W A I +A+ G G A L +M VK D + F+
Sbjct: 511 ARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFV 570
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF 369
+L+ACSH G V++G +FS ME D G++ ++EHYGCMVDLLGRA LL A +LI++MP
Sbjct: 571 QVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPM 629
Query: 370 EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD---GELMMFANLYASCGQWEE 426
EP + + G+LL+AC +H+++E+ A+ + N L+ G ++ +N+YAS G+W +
Sbjct: 630 EPNDVVWGSLLAACRVHKNVEMATYAAERI----NELAPQRAGVHVLLSNIYASAGKWTD 685
Query: 427 ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R R + + G+ K GSS ++VNG H+F +G H
Sbjct: 686 VARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESH 723
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 183/403 (45%), Gaps = 40/403 (9%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
LGV ++Y+FP +L +++ C G+ +HG +K G V++Q L+ Y +D
Sbjct: 125 LGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDH 184
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYAR 119
KVFE M E+++++W S++ +A + A+ L M + ++ +IS A+
Sbjct: 185 GHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAK 244
Query: 120 IGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ + YI + + V N+L+ Y G ++ A +F + + +N++ +NT+
Sbjct: 245 LRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTI 304
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
++ Y R L E + + DEM +PD +T+ S +SA A L L G H Y NGL
Sbjct: 305 LSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGL 364
Query: 236 ASNPHATTALIDMYAKCGS-------------------------------IEQSLEVFYK 264
+IDMY KCG +E + EVF +
Sbjct: 365 EGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQ 424
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
++ WN MI GL A++L EM +KAD +T +G+ SAC + G +
Sbjct: 425 IPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELA 484
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ + +EK+ G+ + +VD+ R A+++ M
Sbjct: 485 KWVHTYIEKN-GIPCDMRLNTALVDMFARCGDPQSAMQVFNKM 526
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 138/302 (45%), Gaps = 16/302 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKM---YGSLRCIDDAFKVFEKMPEK-----DIIAWNSML 83
LH Q K G T L+ S +D A K FE E + NS++
Sbjct: 44 LHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLI 103
Query: 84 DAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARIGKIHSARYIFDKVPA---- 135
++S G A+ L M + VT +F ++SG +I + V
Sbjct: 104 RGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLE 163
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+DV N LI Y G M+ ++F+ M +NV++W +++ GY R E V LF EM
Sbjct: 164 EDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM 223
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
++P +T+ V+SACA L L+ G R+ Y + GL N AL+DMY KCG+I
Sbjct: 224 VEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAI 283
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+ + +F + +++ +N ++ A G AL +L EM + D +T + +SA
Sbjct: 284 DAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISAS 343
Query: 316 SH 317
+
Sbjct: 344 AQ 345
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 131/324 (40%), Gaps = 42/324 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G D + + A+ L G + HG I+ G G + ++ MY
Sbjct: 324 MLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGK 383
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +VF+ M K +++WNS+ F G ++ A ++ + +P ++ +N MISG +
Sbjct: 384 PEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQK 443
Query: 121 GKIHSARYIF----------DKVP------------AKDVVSW----------------- 141
A +F D+V A ++ W
Sbjct: 444 SLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLN 503
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+L+ + G+ + A ++F KM ++V W + LF++M VK
Sbjct: 504 TALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVK 563
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD + VL+AC++ G +E G I D+G++ ++D+ + G + ++ ++
Sbjct: 564 PDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDL 623
Query: 262 F--YKSQVKDVFCWNAMILGLALH 283
+ DV W +++ +H
Sbjct: 624 IKSMPMEPNDVV-WGSLLAACRVH 646
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 104/272 (38%), Gaps = 46/272 (16%)
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE------QSLEVFYK 264
L C L L+ ++H T NGL P T L++ A+ S E ++ E+F +
Sbjct: 32 LRCCKTLNQLK---QLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE 88
Query: 265 SQVKD--VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
D +F N++I G + G G A+ L M V + TF +LS C+
Sbjct: 89 DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFC 148
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--------------- 367
EG ++ + K G+ + C++ +D ++ E M
Sbjct: 149 EGIQVHGSVVK-MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207
Query: 368 -----PFE--------------PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
P E P+ + ++SAC +DL++G+RV + L+
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK 267
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+ ++Y CG + A R + D +V
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLV 299
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 259/463 (55%), Gaps = 49/463 (10%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TA++ Y ++ ++ A + F+ MPE+ +++WN+ML +A G + ++L D M
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMV 252
Query: 104 ----LKDVTSFNIMISG-----------------------------------YARIGKIH 124
D T++ +IS YA+ G I
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIG 312
Query: 125 SARYIFDKVPA-KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
+AR IFD++ A ++ V+WN++I AYT G ++ A E+F M +NV+TWN+M+ GY ++
Sbjct: 313 AARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNG 372
Query: 184 LYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
++LF EM A + PD +T+ SV+SAC +LG+LE G + + T+N + +
Sbjct: 373 QSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH 432
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
A+I MY++CGS+E + VF + +DV +N +I G A HG+G A+ L+ M + ++
Sbjct: 433 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 492
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
D +TFIG+L+ACSHAGL++EG ++F ++ ++HY CMVDLLGR L+ A
Sbjct: 493 PDRVTFIGVLTACSHAGLLEEGRKVFESIKDP-----AIDHYACMVDLLGRVGELEDAKR 547
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASC 421
+E MP EP + G+LL+A IH+ +E+G+ A K+ + + + G ++ +N+YAS
Sbjct: 548 TMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPD--NSGNFILLSNIYASA 605
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+W++ R R M G+ KT G S +E G HKF+ H
Sbjct: 606 GRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSH 648
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 167/359 (46%), Gaps = 71/359 (19%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + +P+L+K+AG G+ H +K G +V+ A++ MY L
Sbjct: 91 MQGCGVRPDAFVYPILIKSAG-----NGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGP 145
Query: 61 IDDAFKVFEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
I A KVF+++P E+ + WN+M+ + A L D+MP ++V ++ M++GYA
Sbjct: 146 IGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYA 205
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
++ + +AR FD +P + VVSWN+++ Y G E
Sbjct: 206 KVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE----------------------- 242
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
EV+ LFDEM ++PD T +V+SAC++ G A + + N
Sbjct: 243 --------EVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLN 294
Query: 239 PHATTALIDMYAKCGSIEQSLEVF-----YKSQV-------------------------- 267
TAL+DMYAKCGSI + +F Y++ V
Sbjct: 295 CFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMP 354
Query: 268 -KDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEG 324
++V WN+MI G A +G A++L EM + D++T + ++SAC H G ++ G
Sbjct: 355 GRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/468 (33%), Positives = 252/468 (53%), Gaps = 11/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ D +++ + A L +G +H K G V++ +L+ MY
Sbjct: 123 MKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQ 182
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+ A K+F+++ E+D ++WNSM+ ++ G AM L M + D + M+
Sbjct: 183 VGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGA 242
Query: 117 YARIGKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ +G + + R + + K + + LI Y G+++ A +F +M+ K+ + W
Sbjct: 243 CSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAW 302
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+T Y ++ E LF EM+ V PD T+++VLSAC ++G+LE G +I +A++
Sbjct: 303 TAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASE 362
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L N + T L+DMY KCG +E++L VF VK+ WNAMI A G+ AL L
Sbjct: 363 LSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLL 422
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M+ V DITFIG+LSAC HAGLV +GC F M FG+ K+EHY ++DLL
Sbjct: 423 FDRMS---VPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLS 479
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA +LD A E +E P +P E +L A+L AC +D+ I ++ +M+ + G +
Sbjct: 480 RAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYV 539
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ +N+ A W+E+ + R +M D G+VKT G S IE+ G +FLAG
Sbjct: 540 ISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLAG 587
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 152/383 (39%), Gaps = 81/383 (21%)
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
C ++ ++ M L V N +I +G + + ++F + S+N +I
Sbjct: 47 CISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGL 106
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
TN TWN + + L+ MK +KPD T
Sbjct: 107 TN--------------------TWND----------HEAALSLYRRMKFSGLKPDKFTYN 136
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
V ACA L + G +H GL + H +LI MYAKCG + + ++F + +
Sbjct: 137 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITER 196
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
D WN+MI G + GY A+ L +M + + D+ T + +L ACSH G ++ G
Sbjct: 197 DTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTG---- 252
Query: 329 SRMEKDFGVTRK-----------LEHYGCMVDLLGRARLLDRAIEL-------------- 363
R+ ++ +T+K + YG DL R+ ++ I+
Sbjct: 253 -RLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQ 311
Query: 364 -------------IEAMPFEPTESILGALLSACVIHQDLEIGDRV----AKMVCAKSNYL 406
+E P L +LSAC LE+G ++ +++ + Y+
Sbjct: 312 NGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYV 371
Query: 407 SDGELMMFANLYASCGQWEEANR 429
+ G ++Y CG+ EEA R
Sbjct: 372 ATG----LVDMYGKCGRVEEALR 390
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 173/505 (34%), Positives = 271/505 (53%), Gaps = 47/505 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D ++FP LLK+ LS +GL +H K+GF +V+V ALL++Y +A
Sbjct: 76 IFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNAC 135
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSF----------- 110
+VF++ P +D +++N++++ G+ +M++ M D +F
Sbjct: 136 RVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLE 195
Query: 111 --------------------------NIMISGYARIGKIHSARYIFDKVPAKD-VVSWNS 143
N ++ YA+ G + A + K V +W S
Sbjct: 196 DRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTS 255
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ AY GE+E A +F +M ++V++W M++GY + + E ++LF E++ ++PD
Sbjct: 256 LVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPD 315
Query: 204 YLTVTSVLSACANLGSLETGARIH-VYATDN-GLASNPHATTALIDMYAKCGSIEQSLEV 261
+ V + LSACA LG+LE G RIH Y D+ N T A++DMYAKCGSIE +L+V
Sbjct: 316 EVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDV 375
Query: 262 FYKSQ--VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
F K+ +K F +N+++ GLA HG G A+ L EM ++ D++T++ LL AC H+G
Sbjct: 376 FLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSG 435
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
LV G LF M ++GV ++EHYGCMVDLLGRA L+ A LI+ MPF+ I AL
Sbjct: 436 LVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFKANAVIWRAL 495
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
LSAC + D+E+ ++ + A N +M +N+ + +EA R +++ GI
Sbjct: 496 LSACKVDGDVELARLASQELLAMEND-HGARYVMLSNMLTLMDKHDEAASVRRAIDNVGI 554
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGH 464
K G S +E+NG+ HKFLAG H
Sbjct: 555 QKPPGWSHVEMNGTLHKFLAGDKSH 579
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 155/389 (39%), Gaps = 83/389 (21%)
Query: 85 AFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV----PA----- 135
A A+ + H+ L +P D+ FN++I ++ H+A ++ K+ P
Sbjct: 21 AAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSSSPPIFPDT 80
Query: 136 --------------------------------KDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+V N+L+ Y G+ A +F +
Sbjct: 81 FTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDE 140
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
V++ +++NT++ G +R+ + +F EM+ G V+PD T ++LSAC+ L G
Sbjct: 141 SPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIG 200
Query: 224 ARIH--VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILGL 280
+H VY N AL+DMYAKCG +E + V K V W +++
Sbjct: 201 RVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAY 260
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
AL G A +L +M + D +++ ++S HAG QE ELF +E D G+
Sbjct: 261 ALRGEVEVARRLFDQMGER----DVVSWTAMISGYCHAGCFQEALELFVELE-DLGM--- 312
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC 400
EP E ++ A LSAC LE+G R+
Sbjct: 313 -----------------------------EPDEVVVVAALSACARLGALELGRRIHHKYD 343
Query: 401 AKSNYL--SDGELMMFANLYASCGQWEEA 427
S + G ++YA CG E A
Sbjct: 344 RDSWQCGHNRGFTCAVVDMYAKCGSIEAA 372
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 170/504 (33%), Positives = 261/504 (51%), Gaps = 41/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D+ ++ L A LSS G LH Q I+ C YV +AL+++Y C
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGC 320
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------------------ 102
+A VF + +++ +AW ++ F G +++L + M
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISG 380
Query: 103 ---------------------PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
++ V N +IS YA+ + SA IF + KD+VSW
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSW 440
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNV 200
S+I A++ G + KA E F M KNVITWN M+ Y++ + + +++ M +V
Sbjct: 441 TSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDV 500
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD++T ++ CA+LG+ + G +I GL + A+I MY+KCG I ++ +
Sbjct: 501 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARK 560
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF VKD+ WNAMI G + HG G A+++ ++ K D I+++ +LS CSH+GL
Sbjct: 561 VFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 620
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
VQEG F M++ ++ LEH+ CMVDLLGRA L A +LI+ MP +PT + GALL
Sbjct: 621 VQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALL 680
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC IH + E+ + AK V + + G M+ A +YA G+ +++ + R +M D GI
Sbjct: 681 SACKIHGNNELAELAAKHV-FELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIK 739
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S +EVN H F A + H
Sbjct: 740 KNPGYSWMEVNNKVHVFKADDVSH 763
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/394 (23%), Positives = 165/394 (41%), Gaps = 71/394 (18%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
++F +K+ G L + L L G K G V AL+ M+ +D A ++F +
Sbjct: 139 FTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVR 198
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA---- 126
+ E I NSML + +DHA++L D MP +DV S+N+M+S ++ G++ A
Sbjct: 199 IKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 258
Query: 127 ----------------------------RY-------IFDKVPAKDVVSWNSLILAYTNA 151
R+ + +P D ++L+ Y
Sbjct: 259 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKC 318
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G ++A +F + +N + W ++ G+L+ + E V+LF++M+A + D + +++
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLI 378
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC------------------- 252
S C + L G ++H +G + +LI MYAKC
Sbjct: 379 SGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIV 438
Query: 253 ------------GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDS 299
G+I ++ E F K+V WNAM+ HG L++ M ++
Sbjct: 439 SWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEK 498
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
V+ D +T++ L C+ G + G ++ R K
Sbjct: 499 DVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVK 532
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 140/312 (44%), Gaps = 40/312 (12%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLD------------------- 84
+V +L Y L + DA ++F +MP +D+ +WN+++
Sbjct: 70 NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129
Query: 85 --------------AFASCGQMDH---AMKLIDLM----PLKDVTSFNIMISGYARIGKI 123
A SCG + A++L+ ++ D ++ + R G +
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
A +F ++ + NS+++ Y ++ A E+F M ++V++WN MV+ +S
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E +D+ +M++ V+ D T TS L+ACA L SL G ++H N +P+ +
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVAS 309
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
AL+++YAKCG +++ VF ++ W +I G HG +++L +M +
Sbjct: 310 ALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTL 369
Query: 304 DDITFIGLLSAC 315
D L+S C
Sbjct: 370 DQFALATLISGC 381
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 128/256 (50%), Gaps = 39/256 (15%)
Query: 80 NSMLDAFASCGQMDHAMKLI-DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDV 138
N++L A+ SCG + A +L+ + +V + N+M++GY ++G++ A +F ++PA+DV
Sbjct: 43 NTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDV 102
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KA 197
SW NT+++GY +SQ Y+ ++ F M ++
Sbjct: 103 ASW-------------------------------NTLMSGYFQSQQYLASLESFVSMHRS 131
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
G+ P+ T + +C LG ++ G + AL+DM+ +CG+++
Sbjct: 132 GDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDL 191
Query: 258 SLEVFYKSQVKDVFCWNAMILG-LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ +F + + +FC N+M++G + +G +A E+ DS + D +++ ++SA S
Sbjct: 192 ASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHAL-----ELFDSMPERDVVSWNMMVSALS 246
Query: 317 HAGLVQEGCELFSRME 332
+G V+E ++ M+
Sbjct: 247 QSGRVREALDMVVDMQ 262
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/468 (33%), Positives = 252/468 (53%), Gaps = 11/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ D +++ + A L +G +H K G V++ +L+ MY
Sbjct: 119 MKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQ 178
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+ A K+F+++ E+D ++WNSM+ ++ G AM L M + D + M+
Sbjct: 179 VGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGA 238
Query: 117 YARIGKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ +G + + R + + K + + LI Y G+++ A +F +M+ K+ + W
Sbjct: 239 CSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAW 298
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+T Y ++ E LF EM+ V PD T+++VLSAC ++G+LE G +I +A++
Sbjct: 299 TAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASE 358
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L N + T L+DMY KCG +E++L VF VK+ WNAMI A G+ AL L
Sbjct: 359 LSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLL 418
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M+ V DITFIG+LSAC HAGLV +GC F M FG+ K+EHY ++DLL
Sbjct: 419 FDRMS---VPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLS 475
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA +LD A E +E P +P E +L A+L AC +D+ I ++ +M+ + G +
Sbjct: 476 RAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYV 535
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ +N+ A W+E+ + R +M D G+VKT G S IE+ G +FLAG
Sbjct: 536 ISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLAG 583
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 152/383 (39%), Gaps = 81/383 (21%)
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
C ++ ++ M L V N +I +G + + ++F + S+N +I
Sbjct: 43 CISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGL 102
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
TN TWN + + L+ MK +KPD T
Sbjct: 103 TN--------------------TWND----------HEAALSLYRRMKFSGLKPDKFTYN 132
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
V ACA L + G +H GL + H +LI MYAKCG + + ++F + +
Sbjct: 133 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITER 192
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
D WN+MI G + GY A+ L +M + + D+ T + +L ACSH G ++ G
Sbjct: 193 DTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTG---- 248
Query: 329 SRMEKDFGVTRK-----------LEHYGCMVDLLGRARLLDRAIEL-------------- 363
R+ ++ +T+K + YG DL R+ ++ I+
Sbjct: 249 -RLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQ 307
Query: 364 -------------IEAMPFEPTESILGALLSACVIHQDLEIGDRV----AKMVCAKSNYL 406
+E P L +LSAC LE+G ++ +++ + Y+
Sbjct: 308 NGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYV 367
Query: 407 SDGELMMFANLYASCGQWEEANR 429
+ G ++Y CG+ EEA R
Sbjct: 368 ATG----LVDMYGKCGRVEEALR 386
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 172/542 (31%), Positives = 270/542 (49%), Gaps = 83/542 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D ++FPLLL+A+ L + + LH ++ GF H++V L+ MY L
Sbjct: 130 MRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLER 189
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAF---------------------------------- 86
+DDA KVF+KM K +++WN+M+ +
Sbjct: 190 MDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSS 249
Query: 87 -ASCGQMDHAMKLIDLMPLKDVT------------------------------------- 108
A CG ++ M L M +K V
Sbjct: 250 HARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDY 309
Query: 109 --SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-- 164
+ N +I+ Y + G + A +F ++ K++VSWN+LI ++ +G +KA E+ ++
Sbjct: 310 LFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEK 369
Query: 165 ------LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+ NVITW+ ++ G+ L E +++F +M+ NVK + +T+ SVLS CA L
Sbjct: 370 MEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLA 429
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+L G +H + + N LI+MY KCGS + VF K + +D WN+MI
Sbjct: 430 ALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIA 489
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
G HG G AL M S + D +TFI LSACSHAGLV EG LFS+M ++F +
Sbjct: 490 GYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIE 549
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
++EHY CMVDLLGRA L++ A +I+ MP EP I +LL++C +H+D ++ + A
Sbjct: 550 PEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAK 609
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ ++ ++ G M+ +N++A+ +WE++ R R G+ K G S IEV + F
Sbjct: 610 ISNLNSKIT-GSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVYMFK 668
Query: 459 AG 460
AG
Sbjct: 669 AG 670
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 29/230 (12%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++S Y+R G + AR +F P + N + W
Sbjct: 76 LVSIYSRYGLVSDARKVFGSAPFE----------------------------CYSNFLLW 107
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N+++ + IE + L+ +M+ V D T +L A +NLG+ +H +
Sbjct: 108 NSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQ 167
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G ++ H LI MYAK ++ + +VF K ++K V WN M+ G A + A ++
Sbjct: 168 FGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRM 227
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME-KDFGVTRKL 341
+M V+ + +T+ LLS+ + G ++E LF +M K G T ++
Sbjct: 228 FHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEM 277
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 262/474 (55%), Gaps = 12/474 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D+ + ++ + L G +H + +++GF +V +AL+ MYG C
Sbjct: 390 MKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGC 449
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
++ A +VFE++ K++++WNSM+ ++ G ++L M + + T+ + ++
Sbjct: 450 LEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMA 509
Query: 117 YAR-----IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+R +GK I ++V A D+ +SLI Y G + A +F+ M NV++
Sbjct: 510 CSRSVNLQLGKFIHGYIIRNRVEA-DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVS 568
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN M++GY++ Y+E + +F +M+ VKPD +T TSVL AC+ L LE G IH +
Sbjct: 569 WNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFII 628
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
++ L N AL+DMYAKCG+++++L +F + +D W +MI HG + ALK
Sbjct: 629 ESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALK 688
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M S K D +TF+ +LSACSHAGLV EGC F++M ++G +EHY C++DLL
Sbjct: 689 LFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLL 748
Query: 352 GRARLLDRAIELIEAMP-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
GR L A E+++ P +L L SAC +H+ L++G+++ +++ K +
Sbjct: 749 GRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEK-DPDDPST 807
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YAS +W+E + R + + G+ K G S IEV H F+ H
Sbjct: 808 YIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSH 861
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 194/375 (51%), Gaps = 17/375 (4%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D +++P +LKA L G M+H IK+GF V V ++ + MY +DA
Sbjct: 294 LKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI 353
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIG 121
K+F++MPE+D+ +WN+++ + GQ + A++L + M + D + +IS AR+
Sbjct: 354 KLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLL 413
Query: 122 KIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ + I ++ A D ++L+ Y G +E A E+F+++ KNV++WN+M+
Sbjct: 414 DLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIA 473
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY ++LF M ++P T++S+L AC+ +L+ G IH Y N + +
Sbjct: 474 GYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEA 533
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ ++LID+Y KCG+I + VF +V WN MI G G AL + +M
Sbjct: 534 DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR 593
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE----HYGCMVDLLGR 353
+ VK D ITF +L ACS ++++G E+ +F + KLE G ++D+ +
Sbjct: 594 KAGVKPDAITFTSVLPACSQLAVLEKGKEI-----HNFIIESKLEINEVVMGALLDMYAK 648
Query: 354 ARLLDRAIELIEAMP 368
+D A+ + +P
Sbjct: 649 CGAVDEALHIFNQLP 663
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 119/485 (24%), Positives = 217/485 (44%), Gaps = 57/485 (11%)
Query: 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK-DII 77
AG +G ++H + + G ++ + +L+ +Y S A VF+ + DI
Sbjct: 204 TAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDIT 263
Query: 78 AWNSMLDA----FASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKIHSARYIFDK 132
WN ++ A F ++ +L+ LK D ++ ++ + +G++ + +
Sbjct: 264 LWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTH 323
Query: 133 VP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
V A DVV +S + Y E A ++F +M ++V +WN +++ Y + +
Sbjct: 324 VIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKA 383
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
++LF+EMK KPD +T+T+V+S+CA L LE G IH+ +G A + ++AL+DM
Sbjct: 384 LELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDM 443
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
Y KCG +E + EVF + Q K+V WN+MI G +L G + ++L M++ ++ T
Sbjct: 444 YGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTL 503
Query: 309 IGLLSACSHAGLVQ-----EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+L ACS + +Q G + +R+E D V L +DL + + A +
Sbjct: 504 SSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSL------IDLYFKCGNIGSAENV 557
Query: 364 IEAMP----------------------------------FEPTESILGALLSACVIHQDL 389
+ MP +P ++L AC L
Sbjct: 558 FQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVL 617
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E G + + +++ + ++YA CG +EA N + + V + +S+I
Sbjct: 618 EKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFV--SWTSMIA 675
Query: 450 VNGSY 454
GS+
Sbjct: 676 AYGSH 680
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/493 (34%), Positives = 260/493 (52%), Gaps = 46/493 (9%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF-CG-HVYVQTALLKMYGSLRCIDDAFK 66
+ +F LL+ G L +HG+ + G C ++ LL Y L DA K
Sbjct: 2 NTQTFYFLLQKCGSLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQK 58
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID------LMP--------------LKD 106
VF + DI++W ++ + Q A + L P KD
Sbjct: 59 VFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKD 118
Query: 107 VTSF-------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
+++ N +I Y+R G I A +F + KDV SW SL+
Sbjct: 119 LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNG 178
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLT 206
+ ++E A +F +M ++N ++W M+TGY++ ++ I ++LF EM+A G P +T
Sbjct: 179 FIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVIT 238
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ +VLS CA++G+ + G+ +H Y L + AL+DMYAK G++ +L++F +
Sbjct: 239 IVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP 298
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+DVF W MI GLALHG G AL+ +M+ S V +++T + +LSACSHAGLV EG
Sbjct: 299 KRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRS 358
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
LF +M + G+ K++HYGCMVDLLGRA LL A ELIE MP +P I +LLSAC++H
Sbjct: 359 LFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVH 418
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
+L + + KM+ + DG ++ N+Y S +WE+A + R M D + K G S
Sbjct: 419 GNLALAEMAGKMI-IELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCS 477
Query: 447 VIEVNGSYHKFLA 459
+EVNG H+FLA
Sbjct: 478 WVEVNGVVHEFLA 490
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 148/349 (42%), Gaps = 43/349 (12%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D++ + A G G ++HG + V AL+ MY I+ A
Sbjct: 98 GLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVA 157
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF+ M KD+ +W S+L+ F C ++ A ++ D MP+++ S+ MI+GY +
Sbjct: 158 CSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPI 217
Query: 125 SARYIFDKVPAK----------------------------------------DVVSWNSL 144
+F ++ A+ DV N+L
Sbjct: 218 PGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNAL 277
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+ Y +G + A ++F++M ++V +W TM++G ++ F +M V P+
Sbjct: 278 MDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNE 337
Query: 205 LTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T+ SVLSAC++ G + G + +G+ ++D+ + G + ++ E+
Sbjct: 338 VTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIE 397
Query: 264 KSQVK-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
+K D W +++ +HG A ++ G+M DD +I L
Sbjct: 398 HMPIKPDSVIWRSLLSACLVHG-NLALAEMAGKMIIELEPDDDGVYILL 445
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 165/471 (35%), Positives = 255/471 (54%), Gaps = 20/471 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G D+++FP +LKA + G +H +K+GF +VYV T LL MY +
Sbjct: 98 MLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKN 157
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
++ KVF+K+P+ +++AW +++ + Q A+++ M +VT N +I+
Sbjct: 158 MESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIA 217
Query: 116 GYARIGKIHSARYIFDKV-----------PAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
AR + + R++ ++V +V+ +++ Y G + A E+F KM
Sbjct: 218 C-ARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKM 276
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+N++ WN M+ Y + + Y E + LF M A PD T SVLS CA L G
Sbjct: 277 PERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGE 336
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS-QVKDVFCWNAMILGLALH 283
+H Y + +A + TAL+DMYAK G + + ++F S + KDV W +MI LA+H
Sbjct: 337 TVHAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIH 396
Query: 284 GYGYAALKLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
G+G AL L M DS + D IT+IG+L ACSH GLV+E + F+ M K +G+ + E
Sbjct: 397 GHGNEALSLFQIMQEDSSLVPDHITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKE 456
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK 402
HY CMVDLL RA A +L+E M P +I GALL+ C IH+++ + +V K+ A+
Sbjct: 457 HYSCMVDLLSRAGHFREAEKLMETMSIRPNIAIWGALLNGCQIHENIPVASQV-KVRLAE 515
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGS 453
+ G + +N+YA+ G+WEE NR R MM I KT G S +E+ S
Sbjct: 516 LEPIQSGIYALLSNIYANSGKWEEVNRTRKMMKHKRIAKTIGHSSVEMKVS 566
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 6/218 (2%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F+++ NV +N+M+ GY +S + L+ +M PD+ T VL AC+
Sbjct: 60 ANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSF 119
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
+ +G +H +G +N + T L++MY +C ++E L+VF K +V W +
Sbjct: 120 IYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCL 179
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-- 334
I G ++ AL++ EM V+A+++T + L AC+ V G + R+ K
Sbjct: 180 INGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGY 239
Query: 335 ----FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
F + +V++ + L+ A EL MP
Sbjct: 240 DPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMP 277
>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
Length = 563
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 239/416 (57%), Gaps = 1/416 (0%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A+L L ++DA +F++MPE++++++ +M+D A CG++ A +L D MP +++
Sbjct: 114 NAMLAGLVRLGSMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLV 173
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+ MISGY + AR +F+ +P K+VV+ ++I Y G+++ A +F + K+
Sbjct: 174 SWAAMISGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKD 233
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
VI+WN +++GY+ + L E L+ M +KPD T+ ++L+AC++L L G H
Sbjct: 234 VISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHA 293
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
L S+ AL+ MY+KCG++++S VF + +D+ WN +I A HG
Sbjct: 294 VVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQK 353
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
+ L EM + +DITF+ +LSAC HAG V E +LF M + ++ + EHY C+V
Sbjct: 354 VIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIV 413
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
D+L RA L++A I+ MP E +++ G LL A H ++++G+ AKM+ S++ S
Sbjct: 414 DILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVL-SDFESS 472
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G +M +N+YA+ G W E NR R+ M + G+ K G S E+ H F+ G H
Sbjct: 473 GAYVMLSNIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWTEIADKVHMFVGGDASH 528
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 116/270 (42%), Gaps = 57/270 (21%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG-EMEKAGEMFKKMLVKNV 169
N I+ AR G + +AR +FD +P +D VSWN+L+ A AG ++ A +F M +NV
Sbjct: 20 NQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNV 79
Query: 170 ITWNT-------------------------------MVTGYLRSQLYIEVVDLFDEMKAG 198
I+WN+ M+ G +R + LFD+M
Sbjct: 80 ISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMPER 139
Query: 199 NVKPDYLTVTSVLSACANLGS-------------LETGARIHVYATDNGLAS-------- 237
NV Y T+ L+ C + S + A I Y +N L
Sbjct: 140 NV-VSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAM 198
Query: 238 ---NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
N A TA+I Y K G ++ + +F + KDV WNA+I G +G G A KL
Sbjct: 199 PEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYI 258
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEG 324
M +K D T I LL+ACS L+++G
Sbjct: 259 IMLREGIKPDQATLIALLTACSSLALLRQG 288
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 113/224 (50%), Gaps = 9/224 (4%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TA++ Y + +A ++F+ + KD+I+WN+++ + G + A KL +M
Sbjct: 202 NVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIML 261
Query: 104 LK----DVTSFNIMISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEME 155
+ D + +++ + + + R + + + N+L+ Y+ G ++
Sbjct: 262 REGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVD 321
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
++ +F + +++++WNT++ Y + Y +V+ LF EM+ + P+ +T S+LSAC
Sbjct: 322 ESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACG 381
Query: 216 NLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+ G ++ ++ + + ++ ++D+ ++ G +E++
Sbjct: 382 HAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKA 425
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D + LL A L+ G H IK + + AL+ MY +D++
Sbjct: 264 GIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDES 323
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMD------HAMKLIDLMPLKDVTSFNIMISGYA 118
VF + +DI++WN+++ A+A G+ H M+L L+P D+T F M+S
Sbjct: 324 ELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIP-NDIT-FLSMLSACG 381
Query: 119 RIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLV---KNVI 170
G++ + +FD + +K +S + ++ + AG++EKA K+M KNV
Sbjct: 382 HAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEKNV- 440
Query: 171 TWNTMV 176
W T++
Sbjct: 441 -WGTLL 445
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/457 (35%), Positives = 258/457 (56%), Gaps = 17/457 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D ++FP + KA G S G +HG K GF +YVQ +L+ YG +A
Sbjct: 101 GFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNA 160
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKI 123
KVF +MP +D+++W ++ F G A+ M ++ ++ ++ ++ R+G +
Sbjct: 161 CKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCL 220
Query: 124 HSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ I + + + N+LI Y ++ A +F ++ K+ ++WN+M++G
Sbjct: 221 SLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGL 280
Query: 180 LRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+ + E +DLF M+ + +KPD +TSVLSACA+LG+++ G +H Y G+ +
Sbjct: 281 VHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWD 340
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
H TA++DMYAKCG IE +LE+F + K+VF WNA++ GLA+HG+G +L+ EM
Sbjct: 341 THIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVK 400
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRME-KDFGVTRKLEHYGCMVDLLGRARLL 357
K + +TF+ L+AC H GLV EG F +M+ +++ + KLEHYGCM+DLL RA LL
Sbjct: 401 LGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLL 460
Query: 358 DRAIELIEAMPFEPTESILGALLSAC-----VIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
D A+EL++AMP +P I GA+LSAC ++ EI D + + G +
Sbjct: 461 DEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILDSFLDI-----EFEDSGVYV 515
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+ +N++A+ +W++ R R +M GI K GSS IE
Sbjct: 516 LLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 129/280 (46%), Gaps = 13/280 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ V + ++ +L ++G + +G +HG +K + AL+ MY
Sbjct: 195 FSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQ 254
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-----KDVTSFNIMIS 115
+ DA +VF ++ +KD ++WNSM+ C + A+ L LM D ++S
Sbjct: 255 LSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLS 314
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVKNVI 170
A +G + R++ + + + W++ ++ Y G +E A E+F + KNV
Sbjct: 315 ACASLGAVDHGRWVHEYILTAG-IKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVF 373
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI--HV 228
TWN ++ G +E + F+EM KP+ +T + L+AC + G ++ G R +
Sbjct: 374 TWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKM 433
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
+ + L +ID+ + G ++++LE+ VK
Sbjct: 434 KSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVK 473
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/388 (37%), Positives = 230/388 (59%), Gaps = 3/388 (0%)
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
++F ++D NS++ ++ CG +D A + D M K +TS+N+MIS Y +I S
Sbjct: 250 RLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFDS 309
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
A + +P K+VVSWN LI Y G++E A +F++M ++ ++WN+M+ GY++ + Y
Sbjct: 310 ADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDY 369
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ LF EM+ NV+ +T+ SVL ACA G+LE G +IH+ + + AL
Sbjct: 370 ARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNAL 429
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG--EMNDSCVKA 303
+DMYAKCG + + EVF + ++K + CWNAMI+ LA+HGY AL+L EM+ +
Sbjct: 430 VDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARP 489
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+ +TFIG+L ACSH GLV EG F+RM ++ + ++HYGCMVDLL R LL A +
Sbjct: 490 NRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHM 549
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I+ MPFE + LL AC +H +++ + + + K L DG+ ++ +N+YA +
Sbjct: 550 IKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQL-GKMEPLRDGDYVLLSNIYAEAQR 608
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVN 451
W + R R+ M +G+ K GSS I +
Sbjct: 609 WNDVERVRSEMIGSGVPKKPGSSHIGIR 636
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 152/362 (41%), Gaps = 39/362 (10%)
Query: 86 FASCGQMDHAMKLIDLM-PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
F CGQ +++ DL+ L+ ++S + I K + F V+S
Sbjct: 100 FGLCGQKMLTIRVPDLLSKLQQLSSVKEVEQTQCLITKSGLFNHPF-------VISKIIS 152
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
L+ + G + A +F+ + N NTM+ Y +S I+ + L++ M ++K D+
Sbjct: 153 FLSLSPLGSLVYAQAIFEDTAMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDH 212
Query: 205 LTVTSVLSACA-----NLGSLE--------TGARIHVYATDNGLASNPHATTALIDMYAK 251
T L ACA N G ++ GA IH GL + +L+ +Y++
Sbjct: 213 FTYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQ 272
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
CG ++ + VF + K + WN MI +A L+G M V +++ L
Sbjct: 273 CGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNV----VSWNML 328
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF-- 369
++ G +++ +F M + V+ + M+ + + RA+ L M
Sbjct: 329 IARYIRLGKIEDAKVVFQEMPERDAVS-----WNSMIAGYVQIKDYARALALFREMEIAN 383
Query: 370 -EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQ---- 423
E T+ L ++L AC LEIG ++ + + Y +G L ++YA CG
Sbjct: 384 VEATDITLISVLGACAETGALEIGRKI-HLSLKQREYKIEGYLSNALVDMYAKCGHLNLA 442
Query: 424 WE 425
WE
Sbjct: 443 WE 444
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 116/261 (44%), Gaps = 27/261 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V A + + +L A + IG +H + + Y+ AL+ MY
Sbjct: 379 MEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGH 438
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-------KDVTSFNIM 113
++ A++VF ++ K I WN+M+ + A G + A++L M + VT ++
Sbjct: 439 LNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVL 498
Query: 114 ISGYARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK- 167
I+ + G + R F+++ + D+ + ++ + G +++A M K M +
Sbjct: 499 IACSHK-GLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEA 557
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDE--MKAGNVKP----DYLTVTSVLSACANLGSLE 221
N + W T++ G R + VDL +E + G ++P DY+ ++++ + +E
Sbjct: 558 NSVLWRTLL-GACRVHHH---VDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVE 613
Query: 222 TGARIHVYATDNGLASNPHAT 242
R+ +G+ P ++
Sbjct: 614 ---RVRSEMIGSGVPKKPGSS 631
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 262/474 (55%), Gaps = 12/474 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D+ + ++ + L G +H + +++GF +V +AL+ MYG C
Sbjct: 198 MKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGC 257
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
++ A +VFE++ K++++WNSM+ ++ G ++L M + + T+ + ++
Sbjct: 258 LEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMA 317
Query: 117 YAR-----IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+R +GK I ++V A D+ +SLI Y G + A +F+ M NV++
Sbjct: 318 CSRSVNLQLGKFIHGYIIRNRVEA-DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVS 376
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN M++GY++ Y+E + +F +M+ VKPD +T TSVL AC+ L LE G IH +
Sbjct: 377 WNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFII 436
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
++ L N AL+DMYAKCG+++++L +F + +D W +MI HG + ALK
Sbjct: 437 ESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALK 496
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M S K D +TF+ +LSACSHAGLV EGC F++M ++G +EHY C++DLL
Sbjct: 497 LFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLL 556
Query: 352 GRARLLDRAIELIEAMP-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
GR L A E+++ P +L L SAC +H+ L++G+++ +++ K +
Sbjct: 557 GRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEK-DPDDPST 615
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YAS +W+E + R + + G+ K G S IEV H F+ H
Sbjct: 616 YIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSH 669
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 194/375 (51%), Gaps = 17/375 (4%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D +++P +LKA L G M+H IK+GF V V ++ + MY +DA
Sbjct: 102 LKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI 161
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIG 121
K+F++MPE+D+ +WN+++ + GQ + A++L + M + D + +IS AR+
Sbjct: 162 KLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLL 221
Query: 122 KIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ + I ++ A D ++L+ Y G +E A E+F+++ KNV++WN+M+
Sbjct: 222 DLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIA 281
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY ++LF M ++P T++S+L AC+ +L+ G IH Y N + +
Sbjct: 282 GYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEA 341
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ ++LID+Y KCG+I + VF +V WN MI G G AL + +M
Sbjct: 342 DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR 401
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE----HYGCMVDLLGR 353
+ VK D ITF +L ACS ++++G E+ +F + KLE G ++D+ +
Sbjct: 402 KAGVKPDAITFTSVLPACSQLAVLEKGKEI-----HNFIIESKLEINEVVMGALLDMYAK 456
Query: 354 ARLLDRAIELIEAMP 368
+D A+ + +P
Sbjct: 457 CGAVDEALHIFNQLP 471
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 117/475 (24%), Positives = 214/475 (45%), Gaps = 57/475 (12%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK-DIIAWNSMLDA-- 85
G ++H + + G ++ + +L+ +Y S A VF+ + DI WN ++ A
Sbjct: 22 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 81
Query: 86 --FASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKIHSARYIFDKVP----AKDV 138
F ++ +L+ LK D ++ ++ + +G++ + + V A DV
Sbjct: 82 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDV 141
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
V +S + Y E A ++F +M ++V +WN +++ Y + + ++LF+EMK
Sbjct: 142 VVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVS 201
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
KPD +T+T+V+S+CA L LE G IH+ +G A + ++AL+DMY KCG +E +
Sbjct: 202 GFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMA 261
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
EVF + Q K+V WN+MI G +L G + ++L M++ ++ T +L ACS +
Sbjct: 262 KEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRS 321
Query: 319 GLVQ-----EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP----- 368
+Q G + +R+E D V L +DL + + A + + MP
Sbjct: 322 VNLQLGKFIHGYIIRNRVEADIFVNSSL------IDLYFKCGNIGSAENVFQNMPKTNVV 375
Query: 369 -----------------------------FEPTESILGALLSACVIHQDLEIGDRVAKMV 399
+P ++L AC LE G + +
Sbjct: 376 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFI 435
Query: 400 CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSY 454
+++ + ++YA CG +EA N + + V + +S+I GS+
Sbjct: 436 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFV--SWTSMIAAYGSH 488
>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/444 (31%), Positives = 260/444 (58%), Gaps = 4/444 (0%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D Y+FPL++K + +G +HG ++ GF V + T+ + YG + + A K
Sbjct: 104 RPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARK 163
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF +MPE+++++W +++ A+ G+++ A ++ DLMP +++ ++N ++ G + G + +A
Sbjct: 164 VFGEMPERNVVSWTALIVAYVKSGELEEAKRMFDLMPERNLGTWNALVDGLVKSGDLVNA 223
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
R +FD++P +D++S+ S+I Y G+M A ++F+ +V W+ ++ GY ++
Sbjct: 224 RKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFENARGVDVRAWSALILGYAQNGQPN 283
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI--HVYATDNGLASNPHATTA 244
E +F EM A NVKPD + ++SAC+ +G E ++ +++ + N +S+ + A
Sbjct: 284 EAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQSMNKFSSH-YVIPA 342
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LIDM AKCG ++++ ++F + +D+ + +M+ G+A+HG G A++L +M D + D
Sbjct: 343 LIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAVRLFEKMVDEGIVPD 402
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
++ F +L CS + LV+EG F M K++ + +HY C+V+LL R L A ELI
Sbjct: 403 EVAFTVILKVCSQSRLVEEGLRYFELMRKEYSILASPDHYSCIVNLLSRTGKLKEAYELI 462
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
++MPFE S G+LL C +H + EI + VA+ + + S G ++ +N+YA+ +W
Sbjct: 463 KSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARQL-FELEPQSAGSYVLLSNIYAALDRW 521
Query: 425 EEANRWRNMMNDTGIVKTAGSSVI 448
+ R+ MN+ GI K G S I
Sbjct: 522 ADLAHLRDKMNENGIKKICGRSWI 545
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 148/344 (43%), Gaps = 83/344 (24%)
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-------------PL--------- 104
VFE++P WN ++ +++ + L+ M PL
Sbjct: 62 VFERVPYPGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNA 121
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KDV + Y + + SAR +F ++P ++VVSW +LI+
Sbjct: 122 EFRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIV 181
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
AY +GE+E+A MF M +N+ TWN +V G ++S + LFDEM K D ++
Sbjct: 182 AYVKSGELEEAKRMFDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMP----KRDIIS 237
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
TS +ID YAK G + + ++F ++
Sbjct: 238 YTS-----------------------------------MIDGYAKGGDMVSARDLFENAR 262
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
DV W+A+ILG A +G A K+ EM VK D+ +GL+SACS G + +
Sbjct: 263 GVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEK 322
Query: 327 LFSRMEKDFGVTRKLEHY--GCMVDLLGRARLLDRAIELIEAMP 368
+ S + + + + HY ++D+ + +DRA +L E MP
Sbjct: 323 VDSYLHQ--SMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMP 364
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 122/312 (39%), Gaps = 35/312 (11%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLG 218
+F+++ WN ++ GY L+ E V L M + G +PD T V+ C+N
Sbjct: 62 VFERVPYPGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNA 121
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
G+ +H G + T+ +D Y KC + + +VF + ++V W A+I+
Sbjct: 122 EFRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIV 181
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD--FG 336
G A ++ M + + T+ L+ +G + +LF M K
Sbjct: 182 AYVKSGELEEAKRMFDLMPERNLG----TWNALVDGLVKSGDLVNARKLFDEMPKRDIIS 237
Query: 337 VTRKLEHY---GCMV---DLLGRARLLD------------------RAIELIEAM---PF 369
T ++ Y G MV DL AR +D A ++ M
Sbjct: 238 YTSMIDGYAKGGDMVSARDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNV 297
Query: 370 EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEAN 428
+P E I+ L+SAC E+ ++V + N S ++ ++ A CG + A
Sbjct: 298 KPDEFIMVGLMSACSQMGCFELCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAA 357
Query: 429 RWRNMMNDTGIV 440
+ M +V
Sbjct: 358 KLFEEMPQRDLV 369
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 171/507 (33%), Positives = 260/507 (51%), Gaps = 77/507 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ LG+ +N ++P L A L + G M H I+ G +V +L+ MY
Sbjct: 118 MKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMY----- 172
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A CG+M A K+ D + KD+ S+N MISGY+++
Sbjct: 173 --------------------------ARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM 206
Query: 121 GKIHSARYIFDKV------PAK----------------DVVSW----------------- 141
A +F ++ P + + +W
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMG 266
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
++LI Y G++ A +F M K+ +TWN M+TGY ++ + E + LF +M+ +
Sbjct: 267 SALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTA 326
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +T+ +LSACA++G+L+ G ++ +YA++ G + + TAL+DMYAKCGS++ + V
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS--CVKADDITFIGLLSACSHAG 319
FY K+ WNAMI LA HG AL L M + V +DITF+G+LSAC HAG
Sbjct: 387 FYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
LV EG LF M FG+ K+EHY CMVDL RA L+ A + + MP +P E ILGAL
Sbjct: 447 LVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGAL 506
Query: 380 LSACVIHQDLEIGDRVAKMV--CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
L AC ++++I +RV K++ SN G ++ + LYA+ +W+++ R R +M
Sbjct: 507 LGACQKRKNIDISERVMKLLLELEPSN---SGNYVISSKLYANLRRWDDSARMRMLMKQK 563
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ KT G S I++N H+F AG + H
Sbjct: 564 GVSKTPGCSWIDINSQLHEFHAGDVLH 590
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 147/326 (45%), Gaps = 42/326 (12%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG----YLRSQLYIEVVDLFDEMKA 197
NS + + + A F +L ++N M+ G + +S L +E + MK
Sbjct: 64 NSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALE---FYSRMKF 120
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+KP+ LT + AC+NL ++E G H GL + H + +LI MYA+CG +
Sbjct: 121 LGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGD 180
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +VF + KD+ WN+MI G + + A+ L EM ++ + ++++ + +L AC
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGE 240
Query: 318 AGLVQEGC--ELF---SRMEKDFGVTRKLEH-YGCMVDLLGRARLLD------------- 358
G ++ G E F ++M ++ + L H YG DL+ R+ D
Sbjct: 241 LGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAM 300
Query: 359 -----------RAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
AI+L + M P + L +LSAC L++G +V ++ ++
Sbjct: 301 ITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV-EIYASERG 359
Query: 405 YLSDGEL-MMFANLYASCGQWEEANR 429
+ D + ++YA CG + A R
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFR 385
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 250/463 (53%), Gaps = 12/463 (2%)
Query: 12 SFPLLLKAAGILSSSC-IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
+FP+ LK+A L G LH +++K + +V T+LL +Y + A +VF++
Sbjct: 119 TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 178
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIMISGYARIGKIHS 125
MP ++W +++ A+ G + A+ + + M T+ ++ + AR+ + +
Sbjct: 179 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL-TACARVADLAT 237
Query: 126 ARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
++ A+ V + + Y GEM KA E+F KM K+ + W MV GY
Sbjct: 238 GETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYAS 297
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ E +DLF M+A V+PD V LSAC LG+L+ G + + NP
Sbjct: 298 NGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 357
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
TALIDMYAKCGS ++ VF + + KD+ WNAMILGL + G+ A L+G+M S V
Sbjct: 358 GTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGV 417
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
K +D TFIGLL +C+H GL+Q+G F M K + ++ ++EHYGC+VDLL RA LL A
Sbjct: 418 KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAH 477
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
+LI+ MP ILGALL C IH++ E+ + V + + S G +M +N+Y++
Sbjct: 478 QLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNS-GNYVMLSNIYSNR 536
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+WE+A + R M + G+ K S +E G H+F G H
Sbjct: 537 GRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSH 579
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 128/295 (43%), Gaps = 25/295 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+++ +L A ++ G + + G V+V TA + +Y + A
Sbjct: 214 GMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKA 273
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----ARI 120
+VF+KM +KD +AW +M+ +AS G A+ L M + V ++G R+
Sbjct: 274 REVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRL 333
Query: 121 GKIHSARYIFDKVPAKDVVSWN----------SLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G + R A +V W+ +LI Y G +A +F++M K++I
Sbjct: 334 GALDLGRQ------AIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDII 387
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVY 229
WN M+ G + L +M+ VK + T +L +C + G ++ G R H
Sbjct: 388 VWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNM 447
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
++ ++D+ ++ G ++++ ++ + NA+ILG L G
Sbjct: 448 TKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPA----NAVILGALLGG 498
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 250/463 (53%), Gaps = 12/463 (2%)
Query: 12 SFPLLLKAAGILSSSC-IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
+FP+ LK+A L G LH +++K + +V T+LL +Y + A +VF++
Sbjct: 72 TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 131
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIMISGYARIGKIHS 125
MP ++W +++ A+ G + A+ + + M T+ ++ + AR+ + +
Sbjct: 132 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL-TACARVADLAT 190
Query: 126 ARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
++ A+ V + + Y GEM KA E+F KM K+ + W MV GY
Sbjct: 191 GETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYAS 250
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ E +DLF M+A V+PD V LSAC LG+L+ G + + NP
Sbjct: 251 NGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 310
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
TALIDMYAKCGS ++ VF + + KD+ WNAMILGL + G+ A L+G+M S V
Sbjct: 311 GTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGV 370
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
K +D TFIGLL +C+H GL+Q+G F M K + ++ ++EHYGC+VDLL RA LL A
Sbjct: 371 KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAH 430
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
+LI+ MP ILGALL C IH++ E+ + V + + S G +M +N+Y++
Sbjct: 431 QLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNS-GNYVMLSNIYSNR 489
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+WE+A + R M + G+ K S +E G H+F G H
Sbjct: 490 GRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSH 532
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 128/295 (43%), Gaps = 25/295 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+++ +L A ++ G + + G V+V TA + +Y + A
Sbjct: 167 GMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKA 226
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----ARI 120
+VF+KM +KD +AW +M+ +AS G A+ L M + V ++G R+
Sbjct: 227 REVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRL 286
Query: 121 GKIHSARYIFDKVPAKDVVSWN----------SLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G + R A +V W+ +LI Y G +A +F++M K++I
Sbjct: 287 GALDLGRQ------AIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDII 340
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVY 229
WN M+ G + L +M+ VK + T +L +C + G ++ G R H
Sbjct: 341 VWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNM 400
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
++ ++D+ ++ G ++++ ++ + NA+ILG L G
Sbjct: 401 TKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPA----NAVILGALLGG 451
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/413 (37%), Positives = 239/413 (57%), Gaps = 17/413 (4%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYAR 119
A ++F ++ +I WN+M+ +A A++L M + D ++ ++ A+
Sbjct: 93 AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152
Query: 120 I------GKIHSA--RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ K+HS R F+ + V N+L+ Y G E A ++F+ M +N++T
Sbjct: 153 LMDVREGEKVHSIAIRNGFESL----VFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 208
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN+++ GY + E + LF EM V+PD T+ S+LSACA LG+L G R HVY
Sbjct: 209 WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 268
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
GL N HA AL+D+YAKCGSI Q+ +VF + + K V W ++I+GLA++G+G AL+
Sbjct: 269 KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALE 328
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L E+ + +ITF+G+L ACSH G+V EG + F RM++++G+ K+EHYGCMVDLL
Sbjct: 329 LFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLL 388
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GRA L+ +A E I+ MP +P + LL AC IH L +G+ VA+ + G+
Sbjct: 389 GRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGE-VARAQLLQLEPKHSGDY 447
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +NLYAS +W + ++ R M G+ KT G S++E+ H+F+ G H
Sbjct: 448 VLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSH 500
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 143/290 (49%), Gaps = 10/290 (3%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D +++P LLKA L G +H I+ GF V+VQ L+ MY + + A
Sbjct: 136 IEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAH 195
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS--FNI--MISGYARIG 121
K+FE M E++++ WNS+++ +A G+ + A+ L M L+ V F + ++S A +G
Sbjct: 196 KLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELG 255
Query: 122 KIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ R Y+ ++ + N+L+ Y G + +A ++F +M K+V++W +++
Sbjct: 256 ALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIV 315
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG-ARIHVYATDNGLA 236
G + E ++LF E++ + P +T VL AC++ G ++ G + G+
Sbjct: 316 GLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIV 375
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHGY 285
++D+ + G ++Q+ E ++ + W ++ +HG+
Sbjct: 376 PKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH 425
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 1/214 (0%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
M A ++F ++ N+ TWNTM+ GY S+ + ++L+ +M ++PD T +L A
Sbjct: 90 MSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKA 149
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
A L + G ++H A NG S L+ MYA CG E + ++F +++ W
Sbjct: 150 IAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTW 209
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
N++I G AL+G AL L EM V+ D T + LLSAC+ G + G M K
Sbjct: 210 NSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK 269
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
G+ L ++DL + + +A ++ + M
Sbjct: 270 -VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEM 302
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 10/182 (5%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D ++ LL A L + +G H +K G G+++ ALL +Y I A
Sbjct: 236 GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQA 295
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG--YA--RI 120
KVF++M EK +++W S++ A G A++L + K + I G YA
Sbjct: 296 HKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHC 355
Query: 121 GKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
G + F ++ + + + ++ AG +++A E + M ++ N + W T
Sbjct: 356 GMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRT 415
Query: 175 MV 176
++
Sbjct: 416 LL 417
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 107/254 (42%), Gaps = 41/254 (16%)
Query: 225 RIHVYATDNGLA-SNPHATTALI-DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
+IH ++ +G+ +NP LI + + C + + ++F + Q ++F WN MI G A
Sbjct: 58 QIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAE 117
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS-----RMEKDFGV 337
AL+L +M+ SC++ D T+ LL A + V+EG ++ S E V
Sbjct: 118 SENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFV 177
Query: 338 TRKLEHY--GC--------MVDLLGRARLL---------------DRAIELIEAMPF--- 369
L H C + +L+ L+ + A+ L M
Sbjct: 178 QNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGV 237
Query: 370 EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM---MFANLYASCGQWEE 426
EP + +LLSAC L +G R A + K DG L +LYA CG +
Sbjct: 238 EPDGFTMVSLLSACAELGALALGRR-AHVYMVKVGL--DGNLHAGNALLDLYAKCGSIRQ 294
Query: 427 ANRWRNMMNDTGIV 440
A++ + M + +V
Sbjct: 295 AHKVFDEMEEKSVV 308
>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
Length = 702
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/433 (35%), Positives = 238/433 (54%), Gaps = 33/433 (7%)
Query: 59 RC-IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
RC ID+A ++FE+MPE+D ++W +M++ + G++D A +L++ MP +++ + MISGY
Sbjct: 239 RCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGY 298
Query: 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ K+ AR FD++ DVV WN++I Y + G + +A + K+M+ K+++TWNTM++
Sbjct: 299 IQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMIS 358
Query: 178 GYLRSQLYIEVVDLFDEMKAGNV-------------------------------KPDYLT 206
Y + V +F+EM ++ KPD L+
Sbjct: 359 CYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLS 418
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
LS+CA + +L+ G ++H G + ALI MYAKCG I ++ VF
Sbjct: 419 FACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGIC 478
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
DV WN++I G A++GYG ALKL EM + D++TFIG+LSAC+HAG+V G +
Sbjct: 479 HADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLK 538
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
LF M K + + EHY CMVDLLGR LD A E++ M + T + GALL AC H
Sbjct: 539 LFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAH 598
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
+LE+G R+A ++ ++ +N++A +W E R +MN + VK G S
Sbjct: 599 GNLELG-RLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCS 657
Query: 447 VIEVNGSYHKFLA 459
+EV H FL+
Sbjct: 658 WVEVRNQVHGFLS 670
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 55/384 (14%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
++L Y R + + F +M E+D+++WN M+D F G +D A K +V
Sbjct: 137 NSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVV 196
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+ M+SG+AR G I +R +FD++P++++VSWN++I AY E+++A +F++M ++
Sbjct: 197 SWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERD 256
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++W TM+ GY+R E +L +EM N+
Sbjct: 257 SVSWTTMINGYVRIGKLDEARELLNEMPYRNIG--------------------------- 289
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
A TA+I Y +C ++++ F + DV CWNAMI G A HG
Sbjct: 290 ------------AQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINE 337
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCM 347
AL L M V D +T+ ++S + G + ++F M E+D L +
Sbjct: 338 ALCLSKRM----VNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSL-----I 388
Query: 348 VDLLGRARLLD--RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS-- 403
+ + LD ++ L+ +P + LS+C L++G+++ ++V
Sbjct: 389 AGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYL 448
Query: 404 NYLSDGELMMFANLYASCGQWEEA 427
NYL ++ +YA CG+ EA
Sbjct: 449 NYLVVNNALI--TMYAKCGRILEA 470
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 172/376 (45%), Gaps = 66/376 (17%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
+++ +Y I+ A +F+KMP +++++WN+M+ + G+ D A KL +MP +D+
Sbjct: 10 NSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDLF 69
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
S+ +MI+ Y R G++ AR +FD +P K V WN++I Y G + +A +F +M
Sbjct: 70 SWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMP 129
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV------------------------- 200
VKN+I+WN+M+ GY +++ ++ F+EM +V
Sbjct: 130 VKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQE 189
Query: 201 --KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
KP+ ++ ++LS A G++ R+ D + N + A+I Y + I+++
Sbjct: 190 TQKPNVVSWVTMLSGFARNGNILESRRLF----DQMPSRNIVSWNAMISAYVQRCEIDEA 245
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND--------------SCVKAD 304
+F + +D W MI G G A +LL EM C K D
Sbjct: 246 SRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVD 305
Query: 305 D-------------ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+ + + +++ +H G + E L RM V + + + M+
Sbjct: 306 EARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRM-----VNKDMVTWNTMISCY 360
Query: 352 GRARLLDRAIELIEAM 367
+ +DRA+++ E M
Sbjct: 361 AQVGQMDRAVKIFEEM 376
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 146/303 (48%), Gaps = 20/303 (6%)
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
M EK+ + +NSM+ +A G+++ A L D MP +++ S+N M+SGY GK A +F
Sbjct: 1 MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM---LVKNVITWNTMVTGYLRSQLYIE 187
+P +D+ SW +I YT GE+EKA E+F + K V WN M++GY++ E
Sbjct: 61 VIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNE 120
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
LFDEM N+ ++ S+L+ + G + + S ++D
Sbjct: 121 AKRLFDEMPVKNL----ISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVS----WNLMVD 172
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
+ + G ++ + + F ++Q +V W M+ G A +G + +L +M + ++
Sbjct: 173 GFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNI----VS 228
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ ++SA + E LF M + V+ + M++ R LD A EL+ M
Sbjct: 229 WNAMISAYVQRCEIDEASRLFEEMPERDSVS-----WTTMINGYVRIGKLDEARELLNEM 283
Query: 368 PFE 370
P+
Sbjct: 284 PYR 286
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G D SF L + +++ +G LH +K G+ ++ V AL+ MY
Sbjct: 407 MGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGR 466
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
I +A VF + D+I+WNS++ +A G A+KL + M
Sbjct: 467 ILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEM 508
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/491 (33%), Positives = 258/491 (52%), Gaps = 55/491 (11%)
Query: 23 LSSSCIGLMLHGQTIKTGFCGHV--YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80
LS+S I +L +K G HV ++ TALL Y +L D A ++F++MPE+ ++
Sbjct: 26 LSASSIHCLL----LKAGLL-HVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRT 80
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI---------------------------- 112
+M A + GQ A+ + M V N+
Sbjct: 81 AMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHAL 140
Query: 113 ---------------MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
+I Y G++ +R +FD +P++ ++WN+++ Y G+++ A
Sbjct: 141 VVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTA 200
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN---VKPDYLTVTSVLSAC 214
EMF M ++V++WNT++ GY + E + LF +M + + V P+ T++++L AC
Sbjct: 201 YEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGAC 260
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS-QVKDVFCW 273
A G LETG +H Y N + + + LIDMY KCGSI+ +L+VF K+ + KD+F W
Sbjct: 261 AGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSW 320
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+I GLA+HG AL++ M D+ + DD+T +G+L+AC+H GLV EG F ME
Sbjct: 321 TTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEA 380
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD 393
F +T K+EHYGCM+DLLGR L A +I MP +P I GA LSAC +H ++E+G
Sbjct: 381 KFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELG- 439
Query: 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGS 453
++A + + +M +++YA W R R MN + KT G S IE+ G
Sbjct: 440 KIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGE 499
Query: 454 YHKFLAGGIGH 464
H+F+AGG H
Sbjct: 500 VHEFVAGGSQH 510
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 51/330 (15%)
Query: 5 GVHADNYSFPLLLKA---AGILSSS-CIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
GV DN + + L A AG ++ G M+H + +G V+V T L+++YG
Sbjct: 106 GVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGE 165
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ + +VF+ MP + I WN+ML +A G++D A ++ MP +DV S+N +++GY
Sbjct: 166 LPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVA 225
Query: 121 GKIHSARYIFDKV--PAKDVVSWN------------------------------------ 142
G+ A +F ++ P+ V N
Sbjct: 226 GRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDG 285
Query: 143 ----SLILAYTNAGEMEKAGEMFKKMLV-KNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
LI Y G ++ A ++F+K K++ +W T++ G + + +FD M+
Sbjct: 286 YLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQD 345
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSI 255
+ PD +T+ VL+ACA+ G ++ G + Y+ + P +ID+ + G +
Sbjct: 346 NGICPDDVTLVGVLNACAHGGLVDEGLG-YFYSMEAKFRITPKIEHYGCMIDLLGRVGRL 404
Query: 256 EQSLEVFYKSQV-KDVFCWNAMILGLALHG 284
+++ + + + W A + +HG
Sbjct: 405 QEAYSMIRTMPMDPNTVIWGAFLSACKVHG 434
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 256/458 (55%), Gaps = 13/458 (2%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP-EK 74
+L A ++S G +HG ++ GF G V V T +L +YG +CID A ++F+ M K
Sbjct: 226 VLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVK 285
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLI-DLMPLKD------VTSFNIMISGYARIGKIHSAR 127
+ + W++M+ A+ C M A++L L+ LKD + +I A + + +
Sbjct: 286 NEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGT 345
Query: 128 ----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
Y D++ N+L+ Y G + A F +M +++ +++ +++GY+++
Sbjct: 346 CLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNG 405
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E + +F EM+ + P+ T+ SVL ACA+L L G+ H YA G ++
Sbjct: 406 NSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICN 465
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
ALIDMYAKCG I+ + +VF + + + WN MI+ +HG G AL L M +K
Sbjct: 466 ALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKP 525
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
DD+TFI L+SACSH+GLV EG F+ M +DFG+ ++EHY CMVDLL RA L
Sbjct: 526 DDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSF 585
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
IE MP EP + GALLSAC +++++E+G+ V+K + K S G ++ +N+Y++ G+
Sbjct: 586 IEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKI-QKLGPESTGNFVLLSNMYSAVGR 644
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
W++A + R + G K+ G S IE++G H FL GG
Sbjct: 645 WDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGG 682
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 165/335 (49%), Gaps = 15/335 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + ++FP +LKA L + G +H + +VYV TAL+ Y C+DDA
Sbjct: 114 GITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDA 173
Query: 65 FKVFEKMPEKDIIAWNSMLDAFA-SCGQMDHAMKLIDLMPLKDVTSFNIMISGY-ARIGK 122
+VF+KM ++D++AWNSM+ F+ G D +L+ M DV+ + I G + +
Sbjct: 174 KEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPAVAQ 232
Query: 123 IHSAR-------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVITWNT 174
++S R + + DVV ++ Y ++ A +F M +VKN +TW+
Sbjct: 233 VNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSA 292
Query: 175 MVTGYLRSQLYIEVVDLFDE---MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
MV Y+ E ++LF + +K + +T+ +V+ CANL L TG +H YA
Sbjct: 293 MVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAI 352
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+G + L+ MYAKCG I ++ F + ++D + A+I G +G L+
Sbjct: 353 KSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLR 412
Query: 292 LLGEMNDSCVKADDITFIGLLSACSH-AGLVQEGC 325
+ EM S + + T +L AC+H AGL C
Sbjct: 413 MFLEMQLSGINPEKATLASVLPACAHLAGLHYGSC 447
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 124/250 (49%), Gaps = 5/250 (2%)
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKM--LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
V + L+ Y E++ A +F KM KNV+ WN ++ Y + Y E +DL+ +M
Sbjct: 52 VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKML 111
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+ P+ T VL AC+ L G IH L SN + +TAL+D YAKCG ++
Sbjct: 112 GYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLD 171
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL-KLLGEMNDSCVKADDITFIGLLSAC 315
+ EVF K +DV WN+MI G +LH Y + +LL +M + V + T +G+L A
Sbjct: 172 DAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAV 230
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
+ ++ G E+ + V + G ++D+ G+ + +D A + + M E
Sbjct: 231 AQVNSLRHGKEIHGFCVRRGFVGDVVVGTG-ILDVYGKCQCIDYARRIFDMMGIVKNEVT 289
Query: 376 LGALLSACVI 385
A++ A V+
Sbjct: 290 WSAMVGAYVV 299
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 152/335 (45%), Gaps = 36/335 (10%)
Query: 15 LLLKAAGILSSSCI-------GLMLHGQTIKTGFCGHVYVQT----------ALLKMYGS 57
L L+ +L SCI G ++H +K C H +T L+ +Y +
Sbjct: 7 LSLEYCTVLLESCIQSKSLFRGKLIHQHLLK---CLHRTHETNLTNFDVPFEKLVDLYIA 63
Query: 58 LRCIDDAFKVFEKMPE--KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFN 111
+ A VF+KMP K+++ WN ++ A+A G + A+ L M +T +F
Sbjct: 64 CSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFP 123
Query: 112 IMISGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
++ + + + R I + +V +L+ Y G ++ A E+F KM +
Sbjct: 124 FVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKR 183
Query: 168 NVITWNTMVTGY-LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
+V+ WN+M++G+ L Y EV L +M+ +V P+ T+ VL A A + SL G I
Sbjct: 184 DVVAWNSMISGFSLHEGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKEI 242
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF-YKSQVKDVFCWNAMILGLALHGY 285
H + G + T ++D+Y KC I+ + +F VK+ W+AM+ + +
Sbjct: 243 HGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDF 302
Query: 286 GYAALKLLGE---MNDSCVKADDITFIGLLSACSH 317
AL+L + + D + +T ++ C++
Sbjct: 303 MREALELFCQLLMLKDDVIVLSAVTLATVIRVCAN 337
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 40/273 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G++ + + +L A L+ G H I GF + AL+ MY
Sbjct: 417 MQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGK 476
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
ID A KVF++M ++ I++WN+M+ A+ G A+ L D M + D +F +IS
Sbjct: 477 IDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISA 536
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ G + +Y F N++ + ME + MV
Sbjct: 537 CSHSGLVAEGKYWF-----------NAMTQDFGIIPRMEH---------------YACMV 570
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
R+ L+ EV ++M ++PD ++LSAC ++E G + G
Sbjct: 571 DLLSRAGLFKEVHSFIEKMP---LEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLG-- 625
Query: 237 SNPHATTALI---DMYAKCGSIEQSLEVFYKSQ 266
P +T + +MY+ G + + +V + +
Sbjct: 626 --PESTGNFVLLSNMYSAVGRWDDAAQVRFTQK 656
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 239/430 (55%), Gaps = 34/430 (7%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D YSF +LKA G +HG IK+G V+V+ L+ +YG
Sbjct: 136 VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGR-------- 187
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
G + A K++D MP++D S+N ++S Y G +
Sbjct: 188 -----------------------SGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDE 224
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD++ ++V SWN +I Y AG +++A E+F M V++V++WN MVT Y Y
Sbjct: 225 ARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCY 284
Query: 186 IEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
EV+++F++M KPD T+ SVLSACA+LGSL G +HVY +G+ TA
Sbjct: 285 NEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATA 344
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMY+KCG I+++LEVF + +DV WN++I L++HG G AL++ EM K +
Sbjct: 345 LVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPN 404
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITFIG+LSAC+H G++ + +LF M + V +EHYGCMVDLLGR ++ A EL+
Sbjct: 405 GITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELV 464
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
+P + +L +LL AC LE +R+A + + S G M +NLYAS G+W
Sbjct: 465 NEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQM-SNLYASDGRW 523
Query: 425 EEA-NRWRNM 433
E+ + RNM
Sbjct: 524 EKVIDGRRNM 533
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 134/324 (41%), Gaps = 28/324 (8%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A + ++ N T N+++ Y S + +F EM G V PD + T VL ACA
Sbjct: 93 AHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAA 152
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
E G +IH +GL ++ L+++Y + G E + +V + V+D WN++
Sbjct: 153 FCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSL 212
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
+ G A L EM + V++ + ++S + AGLV+E E+F M
Sbjct: 213 LSAYLEKGLVDEARALFDEMEERNVESWNF----MISGYAAAGLVKEAKEVFDSMP---- 264
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG----ALLSACVIHQDLEIG 392
R + + MV + +E+ M + TE G ++LSAC L G
Sbjct: 265 -VRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQG 323
Query: 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA------------NRWRNMMNDTGIV 440
+ V + + ++Y+ CG+ ++A + W ++++D V
Sbjct: 324 EWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLS-V 382
Query: 441 KTAGSSVIEVNGS--YHKFLAGGI 462
G +E+ Y F GI
Sbjct: 383 HGLGKDALEIFSEMVYEGFKPNGI 406
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 159/504 (31%), Positives = 267/504 (52%), Gaps = 46/504 (9%)
Query: 5 GVHADNYSFPLLLKA-AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
G D Y+FP LLKA +G +H +K G + +V ++L+ MY +
Sbjct: 13 GARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAV 72
Query: 64 AFKVFEKMPEK---DIIAWNSMLDA--------FASCGQMDHAMKLIDLMP--------- 103
A + + P + + WN+++ + C +D + P
Sbjct: 73 ARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSA 132
Query: 104 ----------------------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
L D+ N +I YA ++ +A +F+ + ++ VSW
Sbjct: 133 CGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSW 192
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S+I + G++++A +F M ++ ++W M+ GY+++ + E +++F EM+ V+
Sbjct: 193 TSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVR 252
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D T+ SV++ACA LG+LETG +Y + +G+ + AL+DMY+KCGSI+Q+L V
Sbjct: 253 ADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGV 312
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + ++D F W A+ILGLA++G+G A+ + M D++TFIG+L+AC+HAGLV
Sbjct: 313 FKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLV 372
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+G + F M +G+ + H+GC++DLLGRA L A+E I MP P +I G LL+
Sbjct: 373 DKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLA 432
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDTGIV 440
AC +H + EIG A+ + +G + ++ +NLYA +WE+ R R ++ + GI
Sbjct: 433 ACRVHGNSEIGQLAAEHLLELDT--ENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIK 490
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S+IE+NG+ H+F+AG H
Sbjct: 491 KEPGCSLIEMNGTIHEFIAGDRSH 514
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 143/325 (44%), Gaps = 41/325 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV ++ +L A G +G+ +H + +G + V AL+ MY
Sbjct: 114 MVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSE 173
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A+++FE M ++ ++W S++ F GQ+D A L D MP +D S+ MI GY +
Sbjct: 174 MDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQA 233
Query: 121 GKIHSARYI-----FDKVPAKDVV-----------------SW----------------- 141
G+ A + F KV A + W
Sbjct: 234 GQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVG 293
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+L+ Y+ G +++A +FK+M +++ TW ++ G + E +++F M
Sbjct: 294 NALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEA 353
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLE 260
PD +T VL+AC + G ++ G + T + G+A N LID+ + G ++++LE
Sbjct: 354 PDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALE 413
Query: 261 VFYKSQVK-DVFCWNAMILGLALHG 284
++ + W ++ +HG
Sbjct: 414 TIGNMPMRPNSAIWGTLLAACRVHG 438
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 20/242 (8%)
Query: 195 MKAGNVKPDYLTVTSVL---SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
M A +PD T +L +A A G++ G +H + G+ N H ++L+ MYA
Sbjct: 9 MLARGARPDAYTFPPLLKAVTAAAERGAV--GDAVHAHVVKFGMELNAHVASSLVLMYAA 66
Query: 252 C--GSIEQSLEVFYKSQVKDV-FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
G++ ++L + ++ D WNA+I G + +M + V +T+
Sbjct: 67 RGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTY 126
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
I +LSAC + G ++ + GV L+ ++D+ +D A EL E M
Sbjct: 127 ITVLSACGKDKYIWLGMQVHKCVVAS-GVLPDLKVGNALIDMYAECSEMDAAWELFEGME 185
Query: 369 FEPT---ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
T S++ L + Q + D + + + DG Y GQ+
Sbjct: 186 VRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDG--------YVQAGQFR 237
Query: 426 EA 427
EA
Sbjct: 238 EA 239
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 171/507 (33%), Positives = 260/507 (51%), Gaps = 77/507 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ LG+ +N ++P L A L + G M H I+ G +V +L+ MY
Sbjct: 118 MKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMY----- 172
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A CG+M A K+ D + KD+ S+N MISGY+++
Sbjct: 173 --------------------------ARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM 206
Query: 121 GKIHSARYIFDKV------PAK----------------DVVSW----------------- 141
A +F ++ P + + +W
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMG 266
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
++LI Y G++ A +F M K+ +TWN M+TGY ++ + E + LF +M+ +
Sbjct: 267 SALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTA 326
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +T+ +LSACA++G+L+ G ++ +YA++ G + + TAL+DMYAKCGS++ + V
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS--CVKADDITFIGLLSACSHAG 319
FY K+ WNAMI LA HG AL L M + V +DITF+G+LSAC HAG
Sbjct: 387 FYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
LV EG LF M FG+ K+EHY CMVDL RA L+ A + + MP +P E ILGAL
Sbjct: 447 LVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGAL 506
Query: 380 LSACVIHQDLEIGDRVAKMV--CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
L AC ++++I +RV K++ SN G ++ + LYA+ +W+++ R R +M
Sbjct: 507 LGACQKRKNIDISERVMKLLLELEPSN---SGNYVISSKLYANLRRWDDSARMRMLMKQK 563
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ KT G S I++N H+F AG + H
Sbjct: 564 GVSKTPGCSWIDINSQLHEFHAGDVLH 590
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 159/357 (44%), Gaps = 43/357 (12%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG----YLRSQLYIEVVDLFDEMKA 197
NS + + + A F +L ++N M+ G + +S L +E + MK
Sbjct: 64 NSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALE---FYSRMKF 120
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+KP+ LT + AC+NL ++E G H GL + H + +LI MYA+CG +
Sbjct: 121 LGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGD 180
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +VF + KD+ WN+MI G + + A+ L EM ++ + ++++ + +L AC
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGE 240
Query: 318 AGLVQEGC--ELF---SRMEKDFGVTRKLEH-YGCMVDLLGRARLLD------------- 358
G ++ G E F ++M ++ + L H YG DL+ R+ D
Sbjct: 241 LGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAM 300
Query: 359 -----------RAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
AI+L + M P + L +LSAC L++G +V ++ ++
Sbjct: 301 ITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV-EIYASERG 359
Query: 405 YLSDGEL-MMFANLYASCGQWEEANR-WRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ D + ++YA CG + A R + M N + A S + +G + LA
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALA 416
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 166/491 (33%), Positives = 257/491 (52%), Gaps = 55/491 (11%)
Query: 23 LSSSCIGLMLHGQTIKTGFCGHV--YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80
LS+S I +L +K G HV ++ TALL Y +L D A ++F++MPE+ ++
Sbjct: 27 LSASSIHCLL----LKAGLL-HVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRT 81
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI---------------------------- 112
+M A + GQ A+ + M V N+
Sbjct: 82 AMARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHAL 141
Query: 113 ---------------MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
+I Y GK+ +R +FD +P++ ++WN+++ Y G+++ A
Sbjct: 142 IVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTA 201
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN---VKPDYLTVTSVLSAC 214
E+F M ++V++WNT++ GY + E + LF +M + + V P+ T++++L AC
Sbjct: 202 YELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGAC 261
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCW 273
A G LETG +H Y N + + + LIDMY KCGSI+ +L+VF K+ K D+F W
Sbjct: 262 AGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSW 321
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+I GLA+HG AL++ M D+ + DD+T +G+L+AC+H GLV EG F ME
Sbjct: 322 TTVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEA 381
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD 393
F +T K+EHYGCM+DLLGR L A +I MP +P I GA LSAC +H ++E+G
Sbjct: 382 KFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELG- 440
Query: 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGS 453
++A + + +M +++YA W R R MN + KT G S IE+ G
Sbjct: 441 KIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGE 500
Query: 454 YHKFLAGGIGH 464
H+F+AGG H
Sbjct: 501 VHEFVAGGSQH 511
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 145/330 (43%), Gaps = 51/330 (15%)
Query: 5 GVHADNYSFPLLLKA---AGILSSS-CIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
GV DN + + L A AG ++ G +H + +G V+V T L+++YG
Sbjct: 107 GVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGK 166
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ + +VF+ MP + I WN+ML +A G++D A +L MP +DV S+N +++GY
Sbjct: 167 LAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVA 226
Query: 121 GKIHSARYIFDKV--PAKDVVSWN------------------------------------ 142
G+ A +F ++ P+ V N
Sbjct: 227 GRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDG 286
Query: 143 ----SLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
LI Y G ++ A ++F+K K ++ +W T++ G + + +FD M+
Sbjct: 287 YLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQD 346
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSI 255
+ PD +T+ VL+ACA+ G ++ G + Y+ + P +ID+ + G +
Sbjct: 347 NGICPDDVTLVGVLNACAHGGLVDEGLG-YFYSMEAKFRITPKIEHYGCMIDLLGRVGRL 405
Query: 256 EQSLEVFYKSQV-KDVFCWNAMILGLALHG 284
+++ + + + W A + +HG
Sbjct: 406 QEAYSMIRTMPMDPNTVIWGAFLSACKVHG 435
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 252/462 (54%), Gaps = 37/462 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
V +Y++ L+KA+ +S G L K GF HV +QT L+
Sbjct: 121 SVSPSSYTYSSLVKASSF--ASRFGESLQAHIWKFGFGFHVKIQTTLI------------ 166
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
D +++ G++ A K+ D MP +D ++ M+S Y R+ +
Sbjct: 167 -------------------DFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMD 207
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SA + +++ K+ + N LI Y G +E+A +F +M VK++I+W TM+ GY +++
Sbjct: 208 SANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKR 267
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
Y E + +F +M + PD +T+++V+SACA+LG LE G +H+Y NG + + +A
Sbjct: 268 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSA 327
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMY+KCGS+E++L VF+ K++FCWN++I GLA HG+ ALK+ +M VK +
Sbjct: 328 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 387
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+TF+ + +AC+HAGLV EG ++ M D+ + +EHYG MV L +A L+ A+ELI
Sbjct: 388 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 447
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
M FEP I GALL C IH++L I + K++ + ++ G + ++YA +
Sbjct: 448 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEP--MNSGYYFLLVSMYAEQNR 505
Query: 424 WEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLAGGIGH 464
W + R M + GI K G+S I ++ H F A H
Sbjct: 506 WRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSH 547
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ D + ++ A L IG +H T++ GF VY+ +AL+ MY
Sbjct: 278 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGS 337
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
++ A VF +P+K++ WNS+++ A+ G A+K+ M ++ V +F + +
Sbjct: 338 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTA 397
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVI 170
G + R I+ D +V + ++ ++ AG + +A E+ M N +
Sbjct: 398 CTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAV 457
Query: 171 TWNTMVTG 178
W ++ G
Sbjct: 458 IWGALLDG 465
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 16/290 (5%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N I A T+ ++ A +M NV +N + G++ I ++L+ M +V
Sbjct: 64 NQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVS 123
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P T +S++ A + + H++ G + T LID Y+ G I ++ +V
Sbjct: 124 PSSYTYSSLVKASSFASRFGESLQAHIWKF--GFGFHVKIQTTLIDFYSATGRIREARKV 181
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + +D W M+ +A L +M++ ++ T L++ G +
Sbjct: 182 FDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEK----NEATSNCLINGYMGLGNL 237
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGA 378
++ LF++M + + + M+ + + AI + M E P E +
Sbjct: 238 EQAESLFNQMP-----VKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMST 292
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEA 427
++SAC LEIG V M ++ ++ D + ++Y+ CG E A
Sbjct: 293 VISACAHLGVLEIGKEV-HMYTLQNGFVLDVYIGSALVDMYSKCGSLERA 341
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 262/475 (55%), Gaps = 12/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G ++ + + + L G+ +H + I +GF ++ +AL+ MYG
Sbjct: 198 MRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGH 257
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFA------SCGQMDHAMKLIDLMP-LKDVTSFNIM 113
++ A +VFE+MP+K ++AWNSM+ + SC Q+ M + P L ++S ++
Sbjct: 258 LEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMV 317
Query: 114 ISGYARI--GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
S AR+ GK I +++ + DV +SL+ Y G++E A +FK + V++
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQS-DVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVS 376
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN M++GY+ E + LF EM+ V+PD +T TSVL+AC+ L +LE G IH
Sbjct: 377 WNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLII 436
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ L +N AL+DMYAKCG+++++ VF +D+ W +MI HG Y AL+
Sbjct: 437 EKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALE 496
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L EM S +K D +TF+ +LSAC HAGLV EGC F++M +G+ ++EHY C++DLL
Sbjct: 497 LFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLL 556
Query: 352 GRARLLDRAIELIEAMP-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
GRA L A E+++ P +L L SAC +H+++++G +A+ + K S
Sbjct: 557 GRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTY 616
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
+++ +N+YAS +W+E R+ M + G+ K G S IE+N F HL
Sbjct: 617 ILL-SNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHL 670
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 186/375 (49%), Gaps = 17/375 (4%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D+Y++P +LKA G L +G M+H +KTG + V ++L+ MY + A
Sbjct: 102 LKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAI 161
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIG 121
+F +MPEKD+ WN+++ + G A++ LM + + IS AR+
Sbjct: 162 WLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLL 221
Query: 122 KIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
++ I +++ D ++L+ Y G +E A E+F++M K V+ WN+M++
Sbjct: 222 DLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMIS 281
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY I + LF M VKP T++S++ C+ L G +H Y N + S
Sbjct: 282 GYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQS 341
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ ++L+D+Y KCG +E + +F V WN MI G G + AL L EM
Sbjct: 342 DVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMR 401
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH----YGCMVDLLGR 353
S V+ D ITF +L+ACS +++G E+ + + + +KL++ G ++D+ +
Sbjct: 402 KSYVEPDAITFTSVLTACSQLAALEKGEEIHNLI-----IEKKLDNNEVVMGALLDMYAK 456
Query: 354 ARLLDRAIELIEAMP 368
+D A + + +P
Sbjct: 457 CGAVDEAFSVFKCLP 471
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 112/449 (24%), Positives = 204/449 (45%), Gaps = 57/449 (12%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK-DIIAWNSMLDAFA 87
G ++H + + G +++ L+ +Y S D A VF+ M +I WN ++ +
Sbjct: 22 GKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYT 81
Query: 88 SCGQMDHAMKLIDLM---PLKDVTSFNIMISGYARIGKIHSA--RYIFDKVPAK------ 136
A++L + + P S+ Y + K +Y+ K+
Sbjct: 82 KNYMYVEALELFEKLLHYPYLKPDSYT-----YPSVLKACGGLYKYVLGKMIHTCLVKTG 136
Query: 137 ---DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD 193
D+V +SL+ Y EKA +F +M K+V WNT+++ Y +S + E ++ F
Sbjct: 137 LMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFG 196
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
M+ +P+ +T+T+ +S+CA L L G IH ++G + ++AL+DMY KCG
Sbjct: 197 LMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCG 256
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+E ++EVF + K V WN+MI G L G + ++L M + VK T L+
Sbjct: 257 HLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIM 316
Query: 314 ACSHAGLVQE-----GCELFSRMEKDFGVTRKLE--HYGC--------MVDLLGRARLLD 358
CS + + E G + +R++ D + L ++ C + L+ +++++
Sbjct: 317 VCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVS 376
Query: 359 RAI---------ELIEAMPF---------EPTESILGALLSACVIHQDLEIGDRVAKMVC 400
+ +L EA+ EP ++L+AC LE G+ + ++
Sbjct: 377 WNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLII 436
Query: 401 AKSNYLSDGELMMFA--NLYASCGQWEEA 427
K L + E++M A ++YA CG +EA
Sbjct: 437 EKK--LDNNEVVMGALLDMYAKCGAVDEA 463
>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
Length = 599
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 163/498 (32%), Positives = 248/498 (49%), Gaps = 77/498 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI--- 61
GV + ++F LL+A +L +HGQ ++ GF G V+VQ AL+ +Y RC
Sbjct: 104 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGGDVFVQNALMDVY--YRCGGAG 161
Query: 62 ---------------------------------DDAFKVFEKMPEKDIIAWNSMLDAFAS 88
A +FE MPE+++++WN+++ FA
Sbjct: 162 GVGAARQVFDQMVEKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFAR 221
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
G M A + D MP ++ S+N+MISGYA G + +A +FD++ KDVVSW +++ AY
Sbjct: 222 AGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAAHSVFDRMDQKDVVSWTAMVSAY 281
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTV 207
G+++ A ++F M VKN+++WN M+TGY + Y E + F M G +PD T+
Sbjct: 282 AKIGDLDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATL 341
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
SV+SACA LGS+E I + + + ALIDM+AKCG + ++ FY+ +
Sbjct: 342 VSVVSACAQLGSVEYCNWIGSFIGKSKIHLTVALGNALIDMFAKCGDVGRAQSFFYEMKT 401
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+ + W MI G A +G+ AL + M ++ DD FI L+AC+H GL+QEG +
Sbjct: 402 RCIITWTTMISGFAFNGFCREALLVYNNMCREGIELDDTVFIAALAACAHGGLLQEGWSI 461
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESILGALLSACVIH 386
F+ M K + + ++EHYGCMVDLLGRA L++ I + PF P+ +L
Sbjct: 462 FNEMVKQYNIQPRMEHYGCMVDLLGRAELIEYVSNKITKLEPFNPSYQVL---------- 511
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
+N A G+W+ R M + GI K GSS
Sbjct: 512 ---------------------------VSNCSALEGRWDGVIGARTSMRNWGIEKVPGSS 544
Query: 447 VIEVNGSYHKFLAGGIGH 464
+I+V H+FLA H
Sbjct: 545 LIQVGSEVHEFLAKDTRH 562
>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 163/481 (33%), Positives = 264/481 (54%), Gaps = 30/481 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ DN++FP ++KA L G+ +H +K G+ V++ +L+ MYG
Sbjct: 1 MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ + +VF++MP+K+ ++W++++ A C Q D + L F M+S +R
Sbjct: 61 YELSRQVFDEMPDKNAVSWSAIIGA---CLQDDRCKEGFSL--------FRQMLSEGSRP 109
Query: 121 GK---IHSARYIFDKVPAKDV---VSWNSLIL----------AYTNAGEMEKAGEMFKKM 164
+ +++ + A DV V N L + G +E A ++F +
Sbjct: 110 SRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGI 169
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+ K+++TW T + Y+++ + +E + L +M + PD +T+ V+ AC+ L S +
Sbjct: 170 MSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAH 229
Query: 225 RIHVYATDNGLASNPHAT-TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+H T + A TALID+Y KCGS+ + +VF Q +++ W+AMI G +H
Sbjct: 230 IVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMH 289
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G+G AL L +M S VK D ITF+ +LSACSH+GLV EG E F+ M +DFGVT + EH
Sbjct: 290 GWGREALNLFDQMKAS-VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEH 348
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
Y CMVD+LGRA LD A + IE MP P ++ GALL AC IH ++++ + VA+ +
Sbjct: 349 YACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLD 408
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIG 463
+ + G ++ N+Y G+ +EA+ R +M + G+ K AG SVIE+ + F+AG
Sbjct: 409 PH-NAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRS 467
Query: 464 H 464
H
Sbjct: 468 H 468
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 153/454 (33%), Positives = 245/454 (53%), Gaps = 33/454 (7%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+++F LKA G+ LH Q + GF H++V T L+ MY
Sbjct: 101 PDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMY------------ 148
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
A CG A ++ D M +V ++N +++ R G + A+
Sbjct: 149 -------------------AECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQ 189
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+F +P +++ SWN ++ Y AGE+ A +F +M +++ ++W+TM+ G+ + + E
Sbjct: 190 DVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDE 249
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
F E+ ++ + +++T VLSACA G+ E G +H + G ALID
Sbjct: 250 AFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALID 309
Query: 248 MYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
Y+KCG++ + VF V + + W ++I GLA+HG G A++L EM +S V+ D I
Sbjct: 310 TYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGI 369
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
TFI LL ACSH+GLV+EGC LFS+M+ +G+ +EHYGCMVDL GRA L +A E I
Sbjct: 370 TFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICE 429
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426
MP P I LL AC IH ++E+ + V K A+ + + G+ ++ +N+YA G+W++
Sbjct: 430 MPVSPNAIIWRTLLGACSIHGNIEMAELV-KARLAEMDPDNSGDHVLLSNVYAVAGKWKD 488
Query: 427 ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ R M + + KT G S+IE++ + F+AG
Sbjct: 489 VSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAG 522
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 117/297 (39%), Gaps = 23/297 (7%)
Query: 137 DVVSWNSLIL--AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
D + + L+L A T + + A +F + NT++ SQ + + F +
Sbjct: 33 DPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQ 92
Query: 195 MK-AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
++ + PD T L A AN L G ++H A +G ++ T LI MYA+CG
Sbjct: 93 LRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECG 152
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT-FIGLL 312
+ VF + +V WNA++ G A + G C+ ++T + G+L
Sbjct: 153 DSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFG-----CMPVRNLTSWNGML 207
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRK-----LEHYGCMVDLLGRARLLDRAIELIEAM 367
+ + AG + +F M V+ H GC + G R L R
Sbjct: 208 AGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLRE------- 260
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQ 423
E L +LSAC E G ++ K+ +L G + + Y+ CG
Sbjct: 261 EIRTNEVSLTGVLSACAQAGAFEFG-KILHGFVEKAGFLYVGSVNNALIDTYSKCGN 316
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 248/461 (53%), Gaps = 41/461 (8%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMK------ 97
++Y +L Y L I A K+F+KMPEKD+++WN+M+ A A CG D A++
Sbjct: 125 NLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFR 184
Query: 98 --------------LIDLMPLKDV-----TSFNIMISG--------------YARIGKIH 124
L + LK+V I+++G Y + G +
Sbjct: 185 QLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMG 244
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
AR +FD++ A+DV++W +++ Y G+M+ A E+F +M KN ++W +++GY R+ +
Sbjct: 245 DARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGM 304
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
+ ++LF +M +V+PD T +S L ACA++ SL+ G +IH Y N +A
Sbjct: 305 GHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSA 364
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
LIDMY+KCGS+ +VF K DV WN +I LA HG G A+++L +M S K
Sbjct: 365 LIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKP 424
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D ITF+ +L+ACSH+GLVQ+G F M D+G+ EHY C++DLLGRA + ++
Sbjct: 425 DKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQ 484
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
+E MP++P + + ALL C IH +E+G + A+ + S ++ +++YA G+
Sbjct: 485 LEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQ-SSTAYVLLSSIYAVLGR 543
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
WE + R +MN+ + K S +E+ H F H
Sbjct: 544 WESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSH 584
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 148/328 (45%), Gaps = 46/328 (14%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
++LG+ + +SF +L L + +HGQ + GF +V + +++L Y +
Sbjct: 184 RQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLM 243
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
DA K+F++M +D++AW +M+ +A G M A +L MP K+ S+ +ISGYAR G
Sbjct: 244 GDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNG 303
Query: 122 KIHSARYIFDKV-----------------------------------------PAKDVVS 140
H A +F K+ P VVS
Sbjct: 304 MGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVS 363
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+LI Y+ G + ++F M K +V+ WNT+++ + E + + D+M
Sbjct: 364 --ALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSG 421
Query: 200 VKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
KPD +T +L+AC++ G ++ G + D G+ + LID+ + G E+
Sbjct: 422 AKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEV 481
Query: 259 LEVFYKSQVK-DVFCWNAMILGLALHGY 285
++ K K D WNA++ +HG+
Sbjct: 482 MDQLEKMPYKPDDRVWNALLGVCRIHGH 509
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 125/235 (53%), Gaps = 6/235 (2%)
Query: 99 IDLMPLKDVTSF--NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
+ L LK +F N +I+ YA+ GK AR +FDK+ A+++ SWN+++ Y G ++
Sbjct: 85 LKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKP 144
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A ++F KM K+V++WNTMV + + + E + + E + ++ + + VL+ C
Sbjct: 145 ARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVK 204
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L + ++H G SN +++++D Y KCG + + ++F + +DV W M
Sbjct: 205 LKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTM 264
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
+ G A G +A +L EM + + +++ L+S + G+ + ELF++M
Sbjct: 265 VSGYAKWGDMKSANELFVEMPEK----NPVSWTALISGYARNGMGHKALELFTKM 315
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA-SNPHATTAL 245
E V + + ++ D T+ S+L CA+ +L G R+H++ GL + L
Sbjct: 42 EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHL 101
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
I+MYAKCG ++ +VF K ++++ WN M+ G A G A KL +M + D
Sbjct: 102 INMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK----DV 157
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEK 333
+++ ++ A + G E +S +
Sbjct: 158 VSWNTMVIAHAQCGYWDEALRFYSEFRQ 185
>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
Length = 548
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/490 (32%), Positives = 259/490 (52%), Gaps = 38/490 (7%)
Query: 15 LLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK 74
+LLKA + +G LH + +K+ V T L+ +Y + DA +VF+ M ++
Sbjct: 60 VLLKATASRADPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDR 119
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLI-------------------------------DLMP 103
+ + N+ML +A+ G M A L + MP
Sbjct: 120 NAVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMP 179
Query: 104 L--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
L ++V ++ + + Y G + +AR +F+K+PA++ W+S++ AG ++A +F
Sbjct: 180 LGMQNVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVF 239
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
K+ V+N++ WN ++ GY + + ++ F M +KPD T+ VLSACA LGSLE
Sbjct: 240 DKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLE 299
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
++H + + + N L+DM+AKCG + + +F Q ++ CWN+MI L+
Sbjct: 300 QARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALS 359
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
HG A++L +M S K ++IT + +L AC+H G V EG +FS+ + +GV +
Sbjct: 360 SHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDI-YGVAAAV 418
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV-- 399
EHYGC+VDLLGRA L A E+++ M EP E I G+LL AC +H D E+ + V+ +
Sbjct: 419 EHYGCLVDLLGRAGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQ 478
Query: 400 -CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
++ +D E ++ +N+ AS +WE+A R R M G+ KT G S +E+ + H+
Sbjct: 479 LHSRRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELEITEHQVC 538
Query: 459 AGGIGHLSNL 468
AG G LS L
Sbjct: 539 AGS-GTLSQL 547
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D ++ +L A L S +H I+ + +V L+ M+ +C D AF
Sbjct: 278 IKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQFVMNGLVDMFA--KCGDLAF 335
Query: 66 --KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYAR 119
+F+ M ++ WNSM+ A +S GQ A++L M + I ++
Sbjct: 336 ARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTH 395
Query: 120 IGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
G + IF K A V + L+ AG + +A E+ K MLV+ N + W +
Sbjct: 396 GGFVDEGLRIFSKFDIYGVAAAVEHYGCLVDLLGRAGRLREAYEIVKNMLVEPNEVIWGS 455
Query: 175 MV 176
++
Sbjct: 456 LL 457
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 166/491 (33%), Positives = 258/491 (52%), Gaps = 55/491 (11%)
Query: 23 LSSSCIGLMLHGQTIKTGFCGHV--YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80
LS+S I +L +K G HV ++ TALL Y +L D A ++F++MPE+ ++
Sbjct: 26 LSASSIHCLL----LKAGLL-HVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRT 80
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI---------------------------- 112
+M A + GQ A+ + M V N+
Sbjct: 81 AMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHAL 140
Query: 113 ---------------MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
+I Y G++ +R +FD +P++ ++WN+++ Y G+++ A
Sbjct: 141 VVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTA 200
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN---VKPDYLTVTSVLSAC 214
EMF M ++V++WNT++ GY + E + LF +M + + V P+ T++++L AC
Sbjct: 201 YEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGAC 260
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS-QVKDVFCW 273
A G LETG +H Y N + + + LIDMY KCGSI+ +L+VF K+ + KD+F W
Sbjct: 261 AGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSW 320
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+I GLA+HG AL++ M D+ + DD+T +G+L+AC+H GLV EG F ME
Sbjct: 321 TTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEA 380
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD 393
F +T K+EHYGCM+DLLGR L A +I MP +P I GA LSAC +H ++E+G
Sbjct: 381 KFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELG- 439
Query: 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGS 453
++A + + +M +++YA W R R MN + KT G S IE+ G
Sbjct: 440 KIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGE 499
Query: 454 YHKFLAGGIGH 464
H+F+AGG H
Sbjct: 500 VHEFVAGGSQH 510
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 51/330 (15%)
Query: 5 GVHADNYSFPLLLKA---AGILSSS-CIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
GV DN + + L A AG ++ G M+H + +G V+V T L+++YG
Sbjct: 106 GVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGE 165
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ + +VF+ MP + I WN+ML +A G++D A ++ MP +DV S+N +++GY
Sbjct: 166 LPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVA 225
Query: 121 GKIHSARYIFDKV--PAKDVVSWN------------------------------------ 142
G+ A +F ++ P+ V N
Sbjct: 226 GRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDG 285
Query: 143 ----SLILAYTNAGEMEKAGEMFKKMLV-KNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
LI Y G ++ A ++F+K K++ +W T++ G + + +FD M+
Sbjct: 286 YLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQD 345
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSI 255
+ PD +T+ VL+ACA+ G ++ G + Y+ + P +ID+ + G +
Sbjct: 346 NGICPDDVTLVGVLNACAHGGLVDEGLG-YFYSMEAKFRITPKIEHYGCMIDLLGRIGRL 404
Query: 256 EQSLEVFYKSQV-KDVFCWNAMILGLALHG 284
+++ + + + W A + +HG
Sbjct: 405 QEAYSMIRTMPMDPNTVIWGAFLSACKVHG 434
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/441 (35%), Positives = 244/441 (55%), Gaps = 32/441 (7%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+++F LL+A L SC G +HG +K G+ +V+ AL+ M+
Sbjct: 96 DSFTFCYLLRACAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMH------------- 142
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
A CG + A L+D +DV + + +I+G+A G++ AR
Sbjct: 143 ------------------AKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQ 184
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD+ KD+V WN ++ AY GEMEKA + + K+V++WNT++TGY L E
Sbjct: 185 LFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEA 244
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+++ DEM+ + PD T+ S+LS CANLGSL TG IH + + AL+ M
Sbjct: 245 LEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVSM 304
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YAKCG ++ ++EVF + + +DV+ WN++I GLA HG +++ +M D + ++I+F
Sbjct: 305 YAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNEISF 364
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ +L ACSHAGLV++G FS M + + HY C+VD+LGR+ LLD A ++ +M
Sbjct: 365 LCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFAIVSSMR 424
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
EP I LL AC IH D+ +G ++A+ K N + G+ ++ + +YASC +W
Sbjct: 425 CEPAVVIWRTLLGACRIHGDVALG-KLARERLLKMNEDASGDYVLLSGIYASCDEWFGVE 483
Query: 429 RWRNMMNDTGIVKTAGSSVIE 449
R M++ GI K AG + +E
Sbjct: 484 TVRGSMDERGIRKVAGYAQVE 504
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 14/280 (5%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G M+ A ++F + ++ N MV GY S L+ ++A +KPD T +L
Sbjct: 45 GGMDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLL 104
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
ACA L G ++H G + ALI+M+AKCG + + + ++ +DV
Sbjct: 105 RACAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVV 164
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
+A+I G A G L + ++ D C D + + +++A + G +++ L R
Sbjct: 165 ARSAVIAGHAAKG----ELDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRA 220
Query: 332 -EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQ 387
EKD + + ++ LL A+E+++ M P E+ + +LLS C
Sbjct: 221 PEKD------VVSWNTIITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLG 274
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
L G + + +S ++YA CG + A
Sbjct: 275 SLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCGDVQAA 314
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 104/260 (40%), Gaps = 42/260 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ +G+ D + LL L S G M+H ++ C + AL+ MY
Sbjct: 251 MRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCGD 310
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +VF +M E+D+ WNS++ A GQ + +++ FN M+
Sbjct: 311 VQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQF-----------FNKML------ 353
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-----NVITWNTM 175
D+ + +S+ ++ A ++AG +E F M+ + N ++ +
Sbjct: 354 ----------DEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCI 403
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V RS L E + M+ +P + ++L AC G + G A + L
Sbjct: 404 VDMLGRSGLLDEAFAIVSSMRC---EPAVVIWRTLLGACRIHGDVALGK----LARERLL 456
Query: 236 ASNPHAT---TALIDMYAKC 252
N A+ L +YA C
Sbjct: 457 KMNEDASGDYVLLSGIYASC 476
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 154/470 (32%), Positives = 250/470 (53%), Gaps = 43/470 (9%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA---- 87
+H +K ++ T +L + +L +D A +F+++ ++ ++N+++ +
Sbjct: 26 IHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHK 85
Query: 88 -----------------------------SC--------GQMDHAMKLIDLMPLKDVTSF 110
SC GQ HA + P +
Sbjct: 86 HPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHA-HVCKFGPKTHAITE 144
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y + G + A +++++ +D VSWNSLI + G+M+ A E+F +M + ++
Sbjct: 145 NALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIV 204
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W TM+ GY R Y + + +F EM+ ++PD ++V SVL ACA LG+LE G IH Y+
Sbjct: 205 SWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYS 264
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G N AL++MYAKCG I+++ +F + KDV W+ MI GLA HG GYAA+
Sbjct: 265 EKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAI 324
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
++ +M + V + +TF+G+LSAC+HAGL EG F M D+ + ++EHYGC+VDL
Sbjct: 325 RVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDL 384
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGR+ +++A++ I MP +P +LLS+C IH +LEI VA K G
Sbjct: 385 LGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIA-VVAMEQLLKLEPEESGN 443
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
++ AN+YA +WE + R ++ I KT G S+IEVN +F++G
Sbjct: 444 YVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSG 493
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 41/317 (12%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D ++FP ++K+ L +G +H K G H + AL+ MY + A++V
Sbjct: 104 PDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQV 163
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
+E+M E+D ++WNS++ GQM A ++ D MP + + S+ MI+GYAR G A
Sbjct: 164 YEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADAL 223
Query: 128 YIFDK----------------VPA-----------------------KDVVSWNSLILAY 148
IF + +PA K+ +N+L+ Y
Sbjct: 224 GIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMY 283
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G +++A +F +M+ K+VI+W+TM+ G + +F++M+ V P+ +T
Sbjct: 284 AKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFV 343
Query: 209 SVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
VLSACA+ G G R V D L L+D+ + G +EQ+L+ K +
Sbjct: 344 GVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPM 403
Query: 268 K-DVFCWNAMILGLALH 283
+ D WN+++ +H
Sbjct: 404 QPDSRTWNSLLSSCRIH 420
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 11/207 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ +G+ D S +L A L + +G +H + K+GF + V AL++MY C
Sbjct: 229 MQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGC 288
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
ID+A+ +F +M EKD+I+W++M+ A+ G+ A+++ + M VT +F ++S
Sbjct: 289 IDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSA 348
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
A G + FD + + + L+ +G++E+A + KM ++ +
Sbjct: 349 CAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSR 408
Query: 171 TWNTMVTG-YLRSQLYIEVVDLFDEMK 196
TWN++++ + L I VV + +K
Sbjct: 409 TWNSLLSSCRIHHNLEIAVVAMEQLLK 435
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 266/472 (56%), Gaps = 11/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+EL V D + + A +L + +G +HG +K+ F G + + +L++MY SL
Sbjct: 290 MRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGR 349
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+++A VF +M KD+++W +M+ + S A++ +M L+ + I ++S
Sbjct: 350 LEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSA 409
Query: 117 YARIGKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A IG + + + +VS NSLI Y+ ++ A E+F+ + KNV++W
Sbjct: 410 CACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSW 469
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ G + E + F +MK ++KP+ +T+ SVLSACA +G+L G IH +A
Sbjct: 470 TSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHALR 528
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G+ + A++DMY +CG +L F SQ KDV WN ++ G A G A++L
Sbjct: 529 TGVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVEL 587
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M + + D+ITFI LL ACS +G+V EG E F+ M+ + +T L+HY C+VD+LG
Sbjct: 588 FDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILG 647
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LD A + I+ MP P +I GALL+AC IH+++E+G+ AK V K N S G +
Sbjct: 648 RAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNK-SVGYYI 706
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ NLYA CG W++ ++ R++M + G+ G S +E+ G H FL+G H
Sbjct: 707 LLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSH 758
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 182/377 (48%), Gaps = 17/377 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M EL + + ++ LL+ + G ++ + C V + ALL M+
Sbjct: 88 MLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGN 147
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIM--- 113
+ DA+ VF KM E+D+ +WN ++ +A G D A+ L M +V +F +
Sbjct: 148 LLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKT 207
Query: 114 ---ISGYARIGKIHS--ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+S AR +IH+ R+ F+ DV N+LI Y G++ A +F KM ++
Sbjct: 208 CAGVSDIARGKEIHAHVIRFGFES----DVDVGNALITMYVKCGDISNARMLFDKMPKRD 263
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
I+WN M++GY + +E ++LF M+ +V PD +T+T+V SAC L + G +H
Sbjct: 264 RISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHG 323
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y + + +LI MY+ G +E++ VF + + KDV W AMI L H +
Sbjct: 324 YVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFK 383
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A++ M + D+IT + +LSAC+ G + G L K G+ + ++
Sbjct: 384 AVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT-GLVSHVIVSNSLI 442
Query: 349 DLLGRARLLDRAIELIE 365
D+ + + +D A+E+
Sbjct: 443 DMYSKCKCVDNALEVFR 459
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 266/472 (56%), Gaps = 11/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+EL V D + + A +L + +G +HG +K+ F G + + +L++MY SL
Sbjct: 290 MRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGR 349
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+++A VF +M KD+++W +M+ + S A++ +M L+ + I ++S
Sbjct: 350 LEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSA 409
Query: 117 YARIGKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A IG + + + +VS NSLI Y+ ++ A E+F+ + KNV++W
Sbjct: 410 CACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSW 469
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ G + E + F +MK ++KP+ +T+ SVLSACA +G+L G IH +A
Sbjct: 470 TSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHALR 528
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G+ + A++DMY +CG +L F SQ KDV WN ++ G A G A++L
Sbjct: 529 TGVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVEL 587
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M + + D+ITFI LL ACS +G+V EG E F+ M+ + +T L+HY C+VD+LG
Sbjct: 588 FDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILG 647
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LD A + I+ MP P +I GALL+AC IH+++E+G+ AK V K N S G +
Sbjct: 648 RAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNK-SVGYYI 706
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ NLYA CG W++ ++ R++M + G+ G S +E+ G H FL+G H
Sbjct: 707 LLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSH 758
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 182/377 (48%), Gaps = 17/377 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M EL + + ++ LL+ + G ++ + C V + ALL M+
Sbjct: 88 MLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGN 147
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIM--- 113
+ DA+ VF KM E+D+ +WN ++ +A G D A+ L M +V +F +
Sbjct: 148 LLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKT 207
Query: 114 ---ISGYARIGKIHS--ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+S AR +IH+ R+ F+ DV N+LI Y G++ A +F KM ++
Sbjct: 208 CAGVSDIARGKEIHAHVIRFGFES----DVDVGNALITMYVKCGDISNARMLFDKMPKRD 263
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
I+WN M++GY + +E ++LF M+ +V PD +T+T+V SAC L + G +H
Sbjct: 264 RISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHG 323
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y + + +LI MY+ G +E++ VF + + KDV W AMI L H +
Sbjct: 324 YVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFK 383
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A++ M + D+IT + +LSAC+ G + G L K G+ + ++
Sbjct: 384 AVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT-GLVSHVIVSNSLI 442
Query: 349 DLLGRARLLDRAIELIE 365
D+ + + +D A+E+
Sbjct: 443 DMYSKCKCVDNALEVFR 459
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 256/465 (55%), Gaps = 42/465 (9%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
HG ++ G +V TAL+ Y + + + +A +VF+ MPE+D++AW MLD++ +
Sbjct: 16 HGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNY 75
Query: 93 DHAMKLIDLMPLKDVTSFNIMI---------SGYARIGK-IHS----------------- 125
+ L++ M V +++ + + R GK IHS
Sbjct: 76 RETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSAL 135
Query: 126 ------------ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
A I+ + KD+VS +++ Y G++E A +F M K+V++W+
Sbjct: 136 INMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWS 195
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
M++ Y + EV++LF++M+ V PD +T+ SV+SACAN+GSL+ IH ++
Sbjct: 196 AMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNH 255
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
G ALIDM++KCGS+ +L +F K+V W +MI A+HG G +AL L
Sbjct: 256 GFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLF 315
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
G+M V+ + +TF+ LL AC HAGLV EG LF M +++ + K EHYGCMVDL+GR
Sbjct: 316 GQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGR 375
Query: 354 ARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA-KSNYLSDGELM 412
A+L+ A++LIE+M P +I G+LL+AC +H D+E+G+ AK + N+ DG +
Sbjct: 376 AKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNH--DGAYV 433
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+ +N++A G W A + R MM G+ K G S +E+N + H F
Sbjct: 434 LLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLELNCTVHGF 478
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 119/295 (40%), Gaps = 43/295 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + ++ A + S +H GF + + AL+ M+
Sbjct: 217 MQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGS 276
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
+ A +F MP K++I W SM+ AFA G A+ L M + V +F +++
Sbjct: 277 LTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYA 336
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
G ++ R +F+ ++ Y + E G M M
Sbjct: 337 CCHAGLVYEGRSLFE-----------CMLQEYRIEPKHEHYGCMVDLM------------ 373
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
R++L E VDL + M +++P+ S+L+AC G +E G +A L
Sbjct: 374 ---GRAKLMQEAVDLIESM---HIRPNVAIWGSLLAACWMHGDIELGE----FAAKKILE 423
Query: 237 SNPH---ATTALIDMYAKCGSIE--QSLEVFYKSQ-VKDVFCWNAMILGLALHGY 285
+P+ A L +++AK G+ Q L V K V ++ + L +HG+
Sbjct: 424 LDPNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLELNCTVHGF 478
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 166/465 (35%), Positives = 253/465 (54%), Gaps = 51/465 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V + ++FP +LKA G +HG +K GF G +V + L++MY
Sbjct: 119 MSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGF 178
Query: 61 IDDAFKVFEK-MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ DA +F K + EKD++ M D G+ + +N+MI GY R
Sbjct: 179 MKDARVLFYKNIIEKDMVV---MTDRRKRDGE---------------IVLWNVMIDGYMR 220
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+G +AR +FDK+ + VVSWN++I Y+ G
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG--------------------------- 253
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ + V++F EMK G+++P+Y+T+ SVL A + LGSLE G +H+YA D+G+ +
Sbjct: 254 ----FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDD 309
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ALIDMY+KCG IE+++ VF + ++V W+AMI G A+HG A+ +M +
Sbjct: 310 VLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQA 369
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V+ D+ +I LL+ACSH GLV+EG FS+M G+ ++EHYGCMVDLLGR+ LLD
Sbjct: 370 GVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDE 429
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A E I MP +P + I ALL AC + ++E+G RVA ++ + S G + +N+YA
Sbjct: 430 AEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDS-GAYVALSNMYA 488
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G W E + R M + I K G S+I+++G H+F+ H
Sbjct: 489 SQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSH 533
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 141/357 (39%), Positives = 219/357 (61%), Gaps = 3/357 (0%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D+ N +I Y+ +H A +F++ KDVVS+N+LI + G+ ++A +F KM
Sbjct: 163 DLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMP 222
Query: 166 VKNVITWNTMVTGYLRS-QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+++ ++W T++ GY +S L ++ + LF+ M V+PD + + S LSACA LG LE G
Sbjct: 223 IRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGK 282
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
IHVY N + N +T L+D+YAKCG IE + E+F S K++F WNA+++GL +HG
Sbjct: 283 SIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHG 342
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
G+ +L M ++ +K D ++F+G+L C HAGLV E F ME + V R+L+HY
Sbjct: 343 RGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLVCEARNFFQEMEVVYRVPRELKHY 402
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
GCM DLLGRA L+ A+E+IE MP + G +L C IH ++EI ++ A+ V A N
Sbjct: 403 GCMADLLGRAGLIREAMEMIERMPMGGDVFVWGGVLGGCRIHGNVEIAEKAAENVMAL-N 461
Query: 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV-NGSYHKFLAG 460
DG + A++YA+ G+WE+ R R +M+ + K G S++++ NG +H F+AG
Sbjct: 462 PEDDGVYSIMADIYANAGRWEDVARIRRLMHSRQVKKNPGCSLVQLNNGVFHGFVAG 518
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 145/335 (43%), Gaps = 60/335 (17%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ L V D ++FP LKA +L + + LH Q K GF ++V L+ +Y +
Sbjct: 120 MRRLSVPPDTHTFPFCLKACSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKH 179
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
+ A +VF + KD++++N+++ F G D A +L D MP++D S+ +++GY
Sbjct: 180 LHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQS 239
Query: 118 ---------------------------------ARIGKIHSARYIF-----DKVPAKDVV 139
A++G++ + I +++P +
Sbjct: 240 GDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFL 299
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG---YLRSQLYIEVVDLFDEMK 196
S L+ Y G +E A E+F+ KN+ TWN ++ G + R L + F M
Sbjct: 300 S-TGLVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLH---YFSRMI 355
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIH------VYATDNGLASNPHATTALIDMYA 250
+KPD ++ +L C + G L AR VY L + D+
Sbjct: 356 EAGIKPDGVSFLGILVGCGHAG-LVCEARNFFQEMEVVYRVPRELKH----YGCMADLLG 410
Query: 251 KCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHG 284
+ G I +++E+ + + DVF W ++ G +HG
Sbjct: 411 RAGLIREAMEMIERMPMGGDVFVWGGVLGGCRIHG 445
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 113/270 (41%), Gaps = 39/270 (14%)
Query: 137 DVVSWNSLILAYTNAGEMEKAG------EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
++++ + +L TNA A +F ++ + +NTM+ + + +
Sbjct: 56 NILTAFTALLPTTNASPTTPAALTGYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALV 115
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
+F M+ +V PD T L AC+ L +L +H A G ++ LI +Y+
Sbjct: 116 IFVRMRRLSVPPDTHTFPFCLKACSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYS 175
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG------------------------YG 286
+ + +VF ++ +KDV +NA+I G G G
Sbjct: 176 VNKHLHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAG 235
Query: 287 YA--------ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
YA A++L M S V+ D+I + LSAC+ G +++G + ++++
Sbjct: 236 YAQSGDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPI 295
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G +VDL + ++ A E+ E+ P
Sbjct: 296 NAFLSTG-LVDLYAKCGCIETAREIFESSP 324
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 164/474 (34%), Positives = 258/474 (54%), Gaps = 17/474 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G DNYSFP +LKA LS G +H T+K G V+VQ AL+ + S ++ A
Sbjct: 122 GTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAA 181
Query: 65 FKVFEKMPE--KDIIAWNSMLDAFASCGQMDHAMKLI-------DLMPLKDVTSFNIMIS 115
VF+ +P +D+++WNSM+ + + + A+K+ L P D + +S
Sbjct: 182 RAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSP--DEVTLVSALS 239
Query: 116 GYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
R+G + + I DV +SLI Y+ G++E A ++F ++ +N +
Sbjct: 240 VCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVC 299
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W +M+ GY +S L+ E ++LF EM+ G D T+ VLSAC + G+L G IH+Y
Sbjct: 300 WTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCE 359
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N + + +A ALI MY+KCG I+++LE+F+ D+F W+A+I GLA++G AL
Sbjct: 360 RNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALH 419
Query: 292 LLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M S ++ ++ITF+G+L AC+H G V +G F+ M + + +T +EHYGCMVDL
Sbjct: 420 LFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDL 479
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA LL A + I +P +P I +LL AC H ++E+ + AK + + G
Sbjct: 480 LGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQI-EELEPRRCGA 538
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YAS +W + R R M I K G S +E++G H+ H
Sbjct: 539 RVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSH 592
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 153/375 (40%), Gaps = 51/375 (13%)
Query: 91 QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN 150
Q H L L L SFN ++S H+ I V VVS L + ++
Sbjct: 25 QSYHNFSLSLLQNLSHPRSFNQILS--------HA---IASGVFRDPVVSSKLLYYSLSH 73
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
+ + +F ++ NV +WN M Y RS E + L++ M PD + V
Sbjct: 74 DHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFV 133
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF--YKSQVK 268
L ACA L L G IH G+ + ALI ++ CG++E + VF + V+
Sbjct: 134 LKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVR 193
Query: 269 DVFCWNAMILG-LALHGYGYAALKLLGE-MNDSCVKADDITFIGLLSACSHAGLVQEG-- 324
DV WN+MI G L H Y ALK+ E + D + D++T + LS C GL+ G
Sbjct: 194 DVVSWNSMISGYLQSHRYEL-ALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKK 252
Query: 325 --------------------CELFSR---MEKDFGVTRKLEH-----YGCMVDLLGRARL 356
+++S+ +E V ++ H + M+ ++ L
Sbjct: 253 IHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDL 312
Query: 357 LDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD-GELM 412
AIEL M F + + +LSAC L G R + C +++ D
Sbjct: 313 FKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG-RWIHLYCERNSIEMDLNARN 371
Query: 413 MFANLYASCGQWEEA 427
+Y+ CG ++A
Sbjct: 372 ALIGMYSKCGDIQKA 386
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 162/464 (34%), Positives = 253/464 (54%), Gaps = 42/464 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------- 96
+V +++ ++G +++A K+F +M +KD+++W++++ + + A+
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMN 281
Query: 97 -------KLIDLMPLKDVTSFNIMISG-------------------------YARIGKIH 124
+++ L L + ++I+G Y+ ++
Sbjct: 282 ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+A+ +F + D +SWNS+I Y GE+EKA +F M K+ ++W+ M++GY +
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDR 401
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
+ E + LF EM+ KPD + SV+SAC +L +L+ G IH Y NGL N T
Sbjct: 402 FTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTT 461
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LI+MY K G +E +LEVF + K V WNA+ILGLA++G +LK EM + V +
Sbjct: 462 LINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPN 521
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+ITF+ +L AC H GLV EG F+ M ++ + ++HYGCMVDLLGRA +L A ELI
Sbjct: 522 EITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELI 581
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQ 423
E+MP P S GALL AC + D E G+R+ K+V ++ DG ++ +N+YAS G
Sbjct: 582 ESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDH--DGFNVLLSNIYASKGN 639
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
W + R MM G+VKT G S+IE +G H+FLAG H N
Sbjct: 640 WVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQN 683
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 174/365 (47%), Gaps = 62/365 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E V ADNY++P+L ++ I + G + +K GF VY+Q
Sbjct: 117 MLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQ------------ 164
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
N++++ +A CG + A K+ D + D+ S+N M++GY +
Sbjct: 165 -------------------NTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLV 205
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A+ ++D++P ++V++ NS+I+ + G +E+A ++F +M K++++W+ +++ Y
Sbjct: 206 GNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYE 265
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++++Y E + LF EM A + D + V SVLSAC+ L + TG +H G+ + +
Sbjct: 266 QNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVN 325
Query: 241 ATTALIDMYA-------------------------------KCGSIEQSLEVFYKSQVKD 269
ALI MY+ KCG IE++ +F KD
Sbjct: 326 LQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKD 385
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
W+AMI G A L L EM K D+ + ++SAC+H + +G + +
Sbjct: 386 NVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHA 445
Query: 330 RMEKD 334
+ K+
Sbjct: 446 YIRKN 450
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 12/233 (5%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+ ++ ++F + N NTM+ GY++ + + ++ M NV D T + +
Sbjct: 76 INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQS 135
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
C+ + G I + G S+ + LI+MYA CG++ + +VF S V D+ W
Sbjct: 136 CSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSW 195
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
N+M+ G L G A + M + V A + ++ G V+E C+LF+ M++
Sbjct: 196 NSMLAGYVLVGNVEEAKDVYDRMPERNVIASN----SMIVLFGKKGNVEEACKLFNEMKQ 251
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT---ESILGALLSAC 383
+ L + ++ + + + A+ L + M E ++ ++LSAC
Sbjct: 252 -----KDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSAC 299
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D ++ A L++ G +H K G ++ + T L+ MY L C
Sbjct: 412 MQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGC 471
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA +VF+ + EK + WN+++ A G +D ++K M VT
Sbjct: 472 VEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTP----------- 520
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-----NVITWNTM 175
+ +++ +++ A + G +++ F M+ + N+ + M
Sbjct: 521 ----------------NEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCM 564
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
V R+ + E +L + M + PD T ++L AC G ETG RI
Sbjct: 565 VDLLGRAGMLKEAEELIESMP---MAPDVSTWGALLGACKKYGDNETGERI 612
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 158/469 (33%), Positives = 258/469 (55%), Gaps = 46/469 (9%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
LGV ++Y+FP +L +++ C G+ +HG +K G
Sbjct: 125 LGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGL---------------------- 162
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
E+D+ N ++ +A CG MDH K+ + M ++V S+ +I GYAR +
Sbjct: 163 ---------EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRP 213
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
A +F ++ K +V N+L+ Y G ++ A +F + + +N++ +NT+++ Y R
Sbjct: 214 KEAVSLFFEMLNKVMV--NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQG 271
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL-----GSLETGARIHVYATDNGLASN 238
L E + + DEM +PD +T+ S +SA A L G + G +H Y NG+ +
Sbjct: 272 LAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCD 331
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
TAL+DM+A+CG + +++VF K +DV W A I +A+ G G A L +M
Sbjct: 332 MRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLI 391
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
VK D + F+ +L+ACSH G V++G +FS ME D G++ ++EHYGCMVDLLGRA LL
Sbjct: 392 QGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHYGCMVDLLGRAGLLR 450
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD---GELMMFA 415
A +LI++MP EP + + G+LL+AC +H+++E+ A+ + N L+ G ++ +
Sbjct: 451 EAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERI----NELAPQRAGVHVLLS 506
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YAS G+W + R R + + G+ K GSS ++VNG H+F +G H
Sbjct: 507 NIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESH 555
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 32/341 (9%)
Query: 130 FDKVPAK--DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN--VITWNTMVTGYLRSQLY 185
D++P+ +V+ + I + + KA E+FK+ + + + N+++ GY + L
Sbjct: 53 LDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLG 112
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
E + L+ M V P++ T VLS C + + G ++H GL + L
Sbjct: 113 REAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCL 172
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKAD 304
I YA+CG ++ +VF ++V W ++I G A A+ L EM N V A
Sbjct: 173 IHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVNA- 231
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+ + C G + LF D V R L Y ++ R L A+ ++
Sbjct: 232 ---LVDMYMKC---GAIDAAKRLF-----DECVDRNLVLYNTILSNYARQGLAREALAIL 280
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC---------AKSNYLSDGEL-MMF 414
+ M + +LSA I ++ D VC K+ D L
Sbjct: 281 DEMLQQGPRPDRVTMLSA--ISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTAL 338
Query: 415 ANLYASCGQWEEANRWRNMMNDTGI---VKTAGSSVIEVNG 452
+++A CG + A + N M + + G+ +E NG
Sbjct: 339 VDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNG 379
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 19/238 (7%)
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE------QSLEVFYK 264
L C L L+ ++H T NGL P T L++ A+ S E ++ E+F +
Sbjct: 32 LRCCKTLNQLK---QLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE 88
Query: 265 SQVKD--VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
D +F N++I G + G G A+ L M V + TF +LS C+
Sbjct: 89 DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFC 148
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EG ++ + K G+ + C++ +D ++ E M S +
Sbjct: 149 EGIQVHGSVVK-MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICG- 206
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
GDR + V L+ + ++Y CG + A R + D +V
Sbjct: 207 ------YARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLV 258
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 147/435 (33%), Positives = 252/435 (57%), Gaps = 38/435 (8%)
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFNIMISG 116
R + DA +F+++P D +++N++L + G + A L MP ++VTS+N M+SG
Sbjct: 65 RLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSG 124
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEM---------------------- 154
+R G + AR +F +PA++ +SWN+++ + +AG+M
Sbjct: 125 LSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAM 184
Query: 155 ----------EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPD 203
EKA + F+ M V+++++WN +V GY+++ + + +F M + +V+P+
Sbjct: 185 VSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPN 244
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T++SVL C+NL +L G ++H + T L+ A T+L+ MY KCG ++ + ++F
Sbjct: 245 ESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFS 304
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ +++DV WNAMI G A HG G A++L +M V+ + ITF+ +L+AC H G+
Sbjct: 305 EMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDF 364
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G + F RM++ +G+ +++HY CMVDLL RA L+RA+ LI +MPF+P S G LL+A
Sbjct: 365 GMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNAS 424
Query: 384 VIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
+++++E + A K++ + N + G + AN+YA QW + +R R M D +VKT
Sbjct: 425 RVYKNMEFAEFAAGKLI--EQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKT 482
Query: 443 AGSSVIEVNGSYHKF 457
G S +E+NG H F
Sbjct: 483 PGYSWVEINGVIHVF 497
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 130/274 (47%), Gaps = 19/274 (6%)
Query: 105 KDVTSFNIMISGYARIGK--------IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
K +N +++GYAR + + AR++FD++P D VS+N+L+ + AG++
Sbjct: 41 KTTADYNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRG 100
Query: 157 AGEMFKKM--LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
A ++F M +NV +WNTM++G RS E +F M A N ++ +++S
Sbjct: 101 ARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARN----SISWNAMVSCF 156
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
A+ G + A D N TA++ Y G +E++++ F V+ + WN
Sbjct: 157 AHAGDMCAAEECFEDAPDK---ENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWN 213
Query: 275 AMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
A++ G + AL + M D+ V+ ++ T +L CS+ + G ++ K
Sbjct: 214 AVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTK 273
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
++R++ +V + + LD A +L M
Sbjct: 274 -LPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEM 306
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 122/224 (54%), Gaps = 12/224 (5%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV- 107
TA++ Y ++ A + FE MP + +++WN+++ + + + A+ + M ++D
Sbjct: 182 TAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTM-VRDAD 240
Query: 108 -----TSFNIMISGYARIGKIHSARYIFD---KVP-AKDVVSWNSLILAYTNAGEMEKAG 158
++ + ++ G + + + R + K+P ++ V + SL+ Y G+++ A
Sbjct: 241 VRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGAC 300
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
++F +M +++VI WN M++GY E ++LF++MK+ V+P+++T +VL+AC + G
Sbjct: 301 KLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTG 360
Query: 219 SLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEV 261
+ G + + G+ + + ++D+ + GS+E+++ +
Sbjct: 361 MCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSL 404
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ V + + +L LS+ G +H K V T+L+ MY
Sbjct: 236 VRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGD 295
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV 107
+D A K+F +M +D+IAWN+M+ +A G A++L + M + V
Sbjct: 296 LDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGV 342
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 246/454 (54%), Gaps = 10/454 (2%)
Query: 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIA 78
A + S +G LHGQ +K F V LL MY ++DA + FEKM +K +++
Sbjct: 663 ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS 722
Query: 79 WNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSARYIFDKVP 134
W S++ A+ G D A++L M K DV S ++ A + R + + +
Sbjct: 723 WTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR 782
Query: 135 AKDVV----SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
++ N+L+ Y G ME+A +F ++ VK++++WNTM+ GY ++ L E +
Sbjct: 783 KNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALK 842
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
LF EM+ + +PD +T+ +L AC +L +LE G IH NG +S H ALIDMY
Sbjct: 843 LFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYV 901
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
KCGS+ + +F KD+ W MI G +HG G A+ +M + +K D+ITF
Sbjct: 902 KCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTS 961
Query: 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
+L ACSH+GL+ EG F+ M + + KLEHY CMVDLL R L +A LIE MP +
Sbjct: 962 ILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIK 1021
Query: 371 PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRW 430
P +I GALL C IH D+E+ ++VA+ V + + G ++ AN+YA +WEE +
Sbjct: 1022 PDATIWGALLCGCRIHHDVELAEKVAEHV-FELEPDNAGYYVLLANIYAEAEKWEEVKKL 1080
Query: 431 RNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R + G+ K+ G S IEV G + F++ H
Sbjct: 1081 RERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAH 1114
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 203/394 (51%), Gaps = 11/394 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+LG+ ++Y+F +LK L +HG K GF + V +L+ Y
Sbjct: 544 MQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGE 603
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMK-LIDLMPLK---DVTSFNIMISG 116
+D A K+F+++ ++D+++WNSM+ G A++ + ++ L+ D+ + ++
Sbjct: 604 VDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAA 663
Query: 117 YARIGKIHSARYIFDK----VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + R + + +++V+ N+L+ Y+ G + A + F+KM K V++W
Sbjct: 664 CANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSW 723
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ Y+R LY + + LF EM++ V PD ++TSVL ACA SL+ G +H Y
Sbjct: 724 TSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRK 783
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N +A + AL+DMYAKCGS+E++ VF + VKD+ WN MI G + + ALKL
Sbjct: 784 NNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKL 843
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM + D IT LL AC ++ G + + ++ G + +L ++D+
Sbjct: 844 FAEMQKE-SRPDGITMACLLPACGSLAALEIGRGIHGCILRN-GYSSELHVANALIDMYV 901
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+ L A L + +P E ++S C +H
Sbjct: 902 KCGSLVHARLLFDMIP-EKDLITWTVMISGCGMH 934
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 2/225 (0%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKN-VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
L+ Y + G + + +F +L N V WN M++ Y + Y E + LF +M+ +
Sbjct: 492 LVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITG 551
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+ T + +L A LG + RIH G S +LI Y K G ++ + ++F
Sbjct: 552 NSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLF 611
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ +DV WN+MI G ++G+ ++AL+ +M V D T + ++AC++ G +
Sbjct: 612 DELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLS 671
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
G L + K +R++ ++D+ + L+ AI+ E M
Sbjct: 672 LGRALHGQGVKAC-FSREVMFNNTLLDMYSKCGNLNDAIQAFEKM 715
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 10/182 (5%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D + LL A G L++ IG +HG ++ G+ ++V AL+ MY + A
Sbjct: 852 RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARL 911
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGK 122
+F+ +PEKD+I W M+ G + A+ M + D +F ++ + G
Sbjct: 912 LFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGL 971
Query: 123 IHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMV 176
++ F+ + ++ + + ++ G + KA + + M +K + W ++
Sbjct: 972 LNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALL 1031
Query: 177 TG 178
G
Sbjct: 1032 CG 1033
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 252/462 (54%), Gaps = 37/462 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
V +Y++ L+KA+ +S G L K GF HV +QT L+
Sbjct: 866 SVSPSSYTYSSLVKASSF--ASRFGESLQAHIWKFGFGFHVKIQTTLI------------ 911
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
D +++ G++ A K+ D MP +D ++ M+S Y R+ +
Sbjct: 912 -------------------DFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMD 952
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SA + +++ K+ + N LI Y G +E+A +F +M VK++I+W TM+ GY +++
Sbjct: 953 SANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKR 1012
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
Y E + +F +M + PD +T+++V+SACA+LG LE G +H+Y NG + + +A
Sbjct: 1013 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSA 1072
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMY+KCGS+E++L VF+ K++FCWN++I GLA HG+ ALK+ +M VK +
Sbjct: 1073 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 1132
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+TF+ + +AC+HAGLV EG ++ M D+ + +EHYG MV L +A L+ A+ELI
Sbjct: 1133 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 1192
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
M FEP I GALL C IH++L I + K++ + ++ G + ++YA +
Sbjct: 1193 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEP--MNSGYYFLLVSMYAEQNR 1250
Query: 424 WEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLAGGIGH 464
W + R M + GI K G+S I ++ H F A H
Sbjct: 1251 WRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSH 1292
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ D + ++ A L IG +H T++ GF VY+ +AL+ MY
Sbjct: 1023 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGS 1082
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
++ A VF +P+K++ WNS+++ A+ G A+K+ M ++ V +F + +
Sbjct: 1083 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTA 1142
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVI 170
G + R I+ D +V + ++ ++ AG + +A E+ M N +
Sbjct: 1143 CTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAV 1202
Query: 171 TWNTMVTG 178
W ++ G
Sbjct: 1203 IWGALLDG 1210
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 16/290 (5%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N I A T+ ++ A +M NV +N + G++ I ++L+ M +V
Sbjct: 809 NQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVS 868
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P T +S++ A + + H++ G + T LID Y+ G I ++ +V
Sbjct: 869 PSSYTYSSLVKASSFASRFGESLQAHIWKF--GFGFHVKIQTTLIDFYSATGRIREARKV 926
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + +D W M+ +A L +M++ ++ T L++ G +
Sbjct: 927 FDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEK----NEATSNCLINGYMGLGNL 982
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGA 378
++ LF++M + + + M+ + + AI + M E P E +
Sbjct: 983 EQAESLFNQMP-----VKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMST 1037
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEA 427
++SAC LEIG V M ++ ++ D + ++Y+ CG E A
Sbjct: 1038 VISACAHLGVLEIGKEV-HMYTLQNGFVLDVYIGSALVDMYSKCGSLERA 1086
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/448 (34%), Positives = 239/448 (53%), Gaps = 2/448 (0%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVY-VQTALLKMYGSLRCIDDAFKV 67
D+++ P L AA L +G LH + G V AL+ +Y A
Sbjct: 81 DHFTLPFALNAAASLRLLPLGASLHAVAFRLGLLPLRLPVANALVDLYAKCEEFSAAHAA 140
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
+P D +++NS+L A A + A L M + S+N M+ Y G + SAR
Sbjct: 141 LADIPAPDAVSFNSLLCAHARNASVRPAESLFAAMRSRTQVSWNAMVVLYVSAGDLVSAR 200
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD++P +D SW+ LI Y G ++ A E+F KM KN++ M+ GY ++
Sbjct: 201 RVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQTGQPKA 260
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ LF +++A ++PD T+ V+SA + +GS E + Y + N TAL+D
Sbjct: 261 ALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNVKVLTALVD 320
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
M+AKCG+IEQ+L F + D + + A+I GLA HG+ AL + M VK D IT
Sbjct: 321 MHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERMQVQAVKPDPIT 380
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
F+G+L+ACSH GLV +G E + M +D+G+ R+ +HY C++D+LGRA ++ A E+++ M
Sbjct: 381 FVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVIDMLGRAGRIEEAFEMVQTM 440
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P P LGALLSAC ++++EI + VA + + + G ++ +N+YA WEEA
Sbjct: 441 PMGPHPGALGALLSACKTYENVEIAEIVANKLFELEPW-NTGNYILLSNIYAGKELWEEA 499
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYH 455
R R++M K GS+ E H
Sbjct: 500 ERVRSLMRTKLPFKNPGSTWFEDRQREH 527
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 172/492 (34%), Positives = 257/492 (52%), Gaps = 51/492 (10%)
Query: 22 ILSSSCIGL----MLHGQTIKTGFCGHVYVQTALLKMYGSLRC-IDDAFKVFEKMPEKDI 76
L SSC +H + I TG H LLK S+ I A VF+ P+ D+
Sbjct: 6 FLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDL 65
Query: 77 IAWNSMLD--AFASCGQMDHAMKLIDLM------PLKDVTSF------------------ 110
+N+++ AF++ D K L+ P + +F
Sbjct: 66 FLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVR 125
Query: 111 ---------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEME 155
N +I Y + + AR +FD P +D+ SWN ++ Y G+M+
Sbjct: 126 VHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMD 185
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
+A ++F +M K+V++W TM++G L+ ++E +D+F M A + P+ T+ S L+ACA
Sbjct: 186 EARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACA 245
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCW 273
NL +L+ G +HVY N + N LIDMYAKCG +E + ++F + + V+ W
Sbjct: 246 NLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPW 305
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
NAMI G A+HG A+++ +M V + +TF+ LL+ACSH V+EG F M
Sbjct: 306 NAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMAS 365
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD 393
+ V +LEHYGC+VDLLGRA L A E+I +M P +I GALLSAC IH+D E+G+
Sbjct: 366 HYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGE 425
Query: 394 RVAKMVCA-KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
RV K+V N+L G ++ AN+Y+ G W EA R + ++G KT G S IE+NG
Sbjct: 426 RVGKIVKELDPNHL--GCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNG 483
Query: 453 SYHKFLAGGIGH 464
+H+FL G H
Sbjct: 484 MFHQFLVGDRSH 495
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 147/327 (44%), Gaps = 45/327 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E + + YSF K G G + IK G +++V AL+ MY +L
Sbjct: 93 IREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDF 152
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA KVF+ P +D+ +WN ML +A G+MD A +L D MP KDV S+ MISG ++
Sbjct: 153 VVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQV 212
Query: 121 GKIHSARYIFDKVPAK----------------------DVVSW------------NSLIL 146
G A IF + AK D W N +L
Sbjct: 213 GYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLL 272
Query: 147 A-----YTNAGEMEKAGEMF--KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
A Y GE+E A ++F L + V WN M+ G+ E +++F++MK
Sbjct: 273 AGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEK 332
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT--ALIDMYAKCGSIEQ 257
V P+ +T ++L+AC++ +E G R + + + P L+D+ + G +++
Sbjct: 333 VSPNKVTFVALLNACSHGNRVEEG-RYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKE 391
Query: 258 SLEVFYKSQV-KDVFCWNAMILGLALH 283
+ E+ + DV W A++ +H
Sbjct: 392 AEEIISSMHLTPDVAIWGALLSACKIH 418
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 167/492 (33%), Positives = 257/492 (52%), Gaps = 42/492 (8%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
PL+LK+ + ++SC G H + G G V+VQTAL+ Y +D A FE+MP
Sbjct: 81 IPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMP 140
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
KD I N ++ ++ G ++ A +L D MP K S+N MI+ YA G+ A +FD+
Sbjct: 141 IKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQ 200
Query: 133 V--------------------------------------PAKDVVSWNSLILAYTNAGEM 154
+ ++V+ +L+ Y +
Sbjct: 201 MLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAI 260
Query: 155 EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
++A F +M ++V+ W+TM+ GY + E ++LF+ MKA N KP+ +T+ VLSAC
Sbjct: 261 DEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 320
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
A LGS E G +I Y L + +ALIDMY KCG + ++ +VF++ + K V WN
Sbjct: 321 AQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWN 380
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+MI GLAL+G+ A+ L GEM V+ ++ITF+ LL+AC+HAGLV +G F M+K+
Sbjct: 381 SMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKN 440
Query: 335 FG-VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD 393
+ ++EH C+VDLL ++ L A + I M EP I LLSAC H D+E+
Sbjct: 441 KQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAK 500
Query: 394 RVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
A K+V + N S ++ +N+YA G W + R++M + K + S IE++G
Sbjct: 501 LAAGKLVVLEPN--SSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDG 558
Query: 453 SYHKFLAGGIGH 464
H+FL H
Sbjct: 559 EVHRFLVQDTYH 570
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 250/460 (54%), Gaps = 13/460 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + + LL A G + G ++ Q K G V ++ AL+ MY C
Sbjct: 213 MQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+ DA + F+ MP + +WN+++D F + A+++ + M L VT I ++S
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332
Query: 117 YARIGKI----HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A++G++ H YI D D + NSLI Y G+M A +F+ M K+V++W
Sbjct: 333 CAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSW 392
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
MV GY++ + +LF+EMK V + + S+LSAC+ LG+L+ G IH Y +
Sbjct: 393 TVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEE 452
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+A + +AL+DMYAKCG I+ + E+F K Q K WNAMI GLA +GYG A++L
Sbjct: 453 MNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVEL 512
Query: 293 LGEMND-SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+M + K D IT +L AC+H G+V EG F M GV EHYGC+VDLL
Sbjct: 513 FDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSS-LGVVPDTEHYGCIVDLL 571
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSDGE 410
GRA +LD A I+ MP EP I G+LL+AC +H +++G + + +V N + G
Sbjct: 572 GRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDV--GV 629
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
++ +NL+A QW++ R +M GI KT G S ++V
Sbjct: 630 HVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 232/455 (50%), Gaps = 20/455 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGI---LSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS 57
M+ GV DNY+ ++ A+ L G +H + GF V+V + L+ YG+
Sbjct: 109 MRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGA 168
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI--- 114
R + +A KVFE+M E+D+++W SM+ A A CG D +K++ M + + + I
Sbjct: 169 FRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISL 228
Query: 115 -SGYARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
S + + R+++++V DV N+LI YT G + A E F+ M +
Sbjct: 229 LSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYT 288
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+WNT++ G++++ + E + +F+EM V PD +T+ SVLSACA LG L G +H Y
Sbjct: 289 KSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSY 348
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA- 288
DNG+ + T +LI+MYAKCG + + VF KDV W M+ G + G+ +
Sbjct: 349 IKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGY-VKGHQFTM 407
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A L EM + V A ++ + LLSACS G + +G E+ S +E + V + L +V
Sbjct: 408 AFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIE-EMNVAKDLCLESALV 466
Query: 349 DLLGRARLLDRAIELIEAMPFEPT---ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
D+ + +D A E+ M + T +++G L S + +E+ D++ ++ K +
Sbjct: 467 DMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDG 526
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
++ L A G +E R+ +M+ G+V
Sbjct: 527 IT---LKAVLGACAHVGMVDEGLRYFYLMSSLGVV 558
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 151/320 (47%), Gaps = 15/320 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD---AFKVFEKMPEKDIIAWNSMLDAFAS 88
LHG+ ++ +V L+ + S D A KVF+ M + + WN M+ ++S
Sbjct: 36 LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSS 95
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA---RYIFDKVPA--------KD 137
C A+ + M + V+ N ++ + R D + A D
Sbjct: 96 CEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSD 155
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V + L+ Y +++A ++F++M ++V++W +M++ + + +V+ + EM+A
Sbjct: 156 VFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQA 215
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ P+ +T+ S+LSAC +++ G ++ G+ ++ ALI MY KCG +
Sbjct: 216 EGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSD 275
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+LE F + WN +I G + AL++ EM V D IT + +LSAC+
Sbjct: 276 ALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQ 335
Query: 318 AGLVQEGCELFSRMEKDFGV 337
G +++G + S + KD G+
Sbjct: 336 LGELRKGMHVHSYI-KDNGI 354
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 4/225 (1%)
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+M A ++F M N WN M+ GY + + + +F EM+ V PD T+ +V+S
Sbjct: 67 DMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVS 126
Query: 213 ACANLGSLE---TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
A A L+ G IH G S+ + L++ Y S++++ +VF + +D
Sbjct: 127 ASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERD 186
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V W +MI A G+ LK+L EM + + +T I LLSAC V EG +++
Sbjct: 187 VVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYN 246
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
++ K FG+ ++ ++ + + L A+E +AMP T+S
Sbjct: 247 QVGK-FGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKS 290
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 151/358 (42%), Positives = 218/358 (60%), Gaps = 7/358 (1%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N MI YA G + AR +FD +D+ SWN +I Y +GE+ +A EMF +M ++V+
Sbjct: 71 NAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVV 130
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W T++ GY++ + E +DLF EM P+ T+ S L+ACANL +L+ G IHVY
Sbjct: 131 SWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYI 190
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVF---YKSQVKDVFCWNAMILGLALHGYGY 287
+ + N +L+DMYAKCG I+ + +VF Y ++K V+ WNAMI G A+HG
Sbjct: 191 DKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSK 249
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
A+ L +M V + +TF+ LL+ACSH LV+EG F M +G+ ++EHYGCM
Sbjct: 250 EAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCM 309
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA-KSNYL 406
VDLLGR+ LL A E + MP P +I GALL AC IH+D+E G R+ K++ S+++
Sbjct: 310 VDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHI 369
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ ANLY++ GQW+EA R + +G KT G S IE+NG +H+FL G H
Sbjct: 370 --GCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSH 425
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 43/322 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + Y+F + KA G G + IK G +++V A+++MY + +D+A
Sbjct: 27 GFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEA 86
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+VF+ ++D+ +WN M+ + G++ A ++ D M +DV S+ +I+GY ++G
Sbjct: 87 RRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFK 146
Query: 125 SARYIFDKV----PA------------------------------KDVVSWNSLILA--- 147
A +F ++ P K + N +LA
Sbjct: 147 EALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLL 206
Query: 148 --YTNAGEMEKAGEMFKKM--LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
Y GE++ A ++F L V WN M+ GY E +DLF++MK V P+
Sbjct: 207 DMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPN 266
Query: 204 YLTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE-V 261
+T ++L+AC++ +E G A+ G+ ++D+ + G ++++ E V
Sbjct: 267 KVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETV 326
Query: 262 FYKSQVKDVFCWNAMILGLALH 283
F D W A++ +H
Sbjct: 327 FNMPMAPDATIWGALLGACRIH 348
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 39/223 (17%)
Query: 202 PDYLTVTSVLSACAN-LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ T V AC N LG LE G +I V+A GL SN T A+I MYA G ++++
Sbjct: 30 PNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARR 88
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF S +D++ WN MI G G + EM D + D +++ +++ G
Sbjct: 89 VFDWSLDQDLYSWNIMIGGYV----GSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGC 144
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
+E +LF E+++ P P E L + L
Sbjct: 145 FKEALDLFH--------------------------------EMLQTGP-PPNEFTLASAL 171
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
+AC L+ G + + +++ L ++YA CG+
Sbjct: 172 AACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGE 214
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 160/469 (34%), Positives = 245/469 (52%), Gaps = 46/469 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D+Y+FP +LKA + IG +HG K G ++V L+ MYG
Sbjct: 137 VKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGK-------- 188
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
CG + A ++D M +DV S+N +++GYA+ +
Sbjct: 189 -----------------------CGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDD 225
Query: 126 ARYIFDKVPA----KDVVSWNSLILAYTNAG--EMEKAGEMFKKMLVKNVITWNTMVTGY 179
A + ++ + D + SL+ A +N + +MF KM K++++WN M+ Y
Sbjct: 226 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 285
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+++ + +E V+L+ M+A +PD +++TSVL AC + +L G +IH Y L N
Sbjct: 286 MKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 345
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMYAKCG ++++ +VF + +DV W AMI G G A+ L +M DS
Sbjct: 346 LLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDS 405
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ D I F+ L+ACSHAGL++EG F M + +T +LEH CMVDLLGRA +
Sbjct: 406 GLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKE 465
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMFA 415
A + I+ MP EP E + GALL AC +H + +IG D++ ++ +S Y ++ +
Sbjct: 466 AYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGY-----YVLLS 520
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA G+WEE RN+M G+ K G+S +EVN H FL G H
Sbjct: 521 NIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 569
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 154/313 (49%), Gaps = 22/313 (7%)
Query: 123 IHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ + R + ++ ++D+ +NS L+ AY + ++ A ++F ++ +NVI N M+
Sbjct: 56 LKTLRTVHSRIISEDL-RYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIR 114
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
Y+ + Y E + +F M + +VKPD+ T VL AC+ G++ G +IH AT GL+S
Sbjct: 115 SYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSS 174
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
L+ MY KCG + ++ V + +DV WN+++ G A + AL++ EM
Sbjct: 175 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREME 234
Query: 298 DSCVKADDITFIGLLSACSHAGL--VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+ D T LL A S+ V ++F +M K + L + M+ + +
Sbjct: 235 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGK-----KSLVSWNVMIGVYMKNA 289
Query: 356 LLDRAIEL---IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK---SNYLSDG 409
+ A+EL +EA FEP + ++L AC L +G ++ + K N L +
Sbjct: 290 MPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLEN 349
Query: 410 ELMMFANLYASCG 422
L+ ++YA CG
Sbjct: 350 ALI---DMYAKCG 359
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D S +L A G S+ +G +HG + ++ ++ AL+ MY C
Sbjct: 301 MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC 360
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
+D A VFE M +D+++W +M+ A+ G+ A+ L M + D +F ++
Sbjct: 361 LDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAA 420
Query: 117 YARIGKIHSARYIF 130
+ G + R F
Sbjct: 421 CSHAGLLEEGRSCF 434
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 250/460 (54%), Gaps = 13/460 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + + LL A G + G ++ Q K G V ++ AL+ MY C
Sbjct: 213 MQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+ DA + F+ MP + +WN+++D F + A+++ + M L VT I ++S
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332
Query: 117 YARIGKI----HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A++G++ H YI D D + NSLI Y G+M A +F+ M K+V++W
Sbjct: 333 CAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSW 392
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
MV GY++ + +LF+EMK V + + S+LSAC+ LG+L+ G IH Y +
Sbjct: 393 TVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEE 452
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+A + +AL+DMYAKCG I+ + E+F K Q K WNAMI GLA +GYG A++L
Sbjct: 453 MNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVEL 512
Query: 293 LGEMND-SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+M + K D IT +L AC+H G+V EG F M GV EHYGC+VDLL
Sbjct: 513 FDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSS-LGVVPDTEHYGCIVDLL 571
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSDGE 410
GRA +LD A I+ MP EP I G+LL+AC +H +++G + + +V N + G
Sbjct: 572 GRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDV--GV 629
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
++ +NL+A QW++ R +M GI KT G S ++V
Sbjct: 630 HVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 233/455 (51%), Gaps = 20/455 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGI---LSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS 57
M+ GV DNY+ ++ A+ L G +H + GF V+V + L+ YG+
Sbjct: 109 MRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGA 168
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI--- 114
R +++A KVFE+M E+D+++W SM+ A A CG D +K++ M + + + I
Sbjct: 169 FRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISL 228
Query: 115 -SGYARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
S + + R+++++V DV N+LI YT G + A E F+ M +
Sbjct: 229 LSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYT 288
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+WNT++ G++++ + E + +F+EM V PD +T+ SVLSACA LG L G +H Y
Sbjct: 289 KSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSY 348
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA- 288
DNG+ + T +LI+MYAKCG + + VF KDV W M+ G + G+ +
Sbjct: 349 IKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGY-VKGHQFTM 407
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A L EM + V A ++ + LLSACS G + +G E+ S +E + V + L +V
Sbjct: 408 AFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIE-EMNVAKDLCLESALV 466
Query: 349 DLLGRARLLDRAIELIEAMPFEPT---ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
D+ + +D A E+ M + T +++G L S + +E+ D++ ++ K +
Sbjct: 467 DMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDG 526
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
++ L A G +E R+ +M+ G+V
Sbjct: 527 IT---LKAVLGACAHVGMVDEGLRYFYLMSSLGVV 558
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 151/320 (47%), Gaps = 15/320 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD---AFKVFEKMPEKDIIAWNSMLDAFAS 88
LHG+ ++ +V L+ + S D A KVF+ M + + WN M+ ++S
Sbjct: 36 LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSS 95
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA---RYIFDKVPA--------KD 137
C A+ + M + V+ N ++ + R D + A D
Sbjct: 96 CEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSD 155
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V + L+ Y +E+A ++F++M ++V++W +M++ + + +V+ + EM+A
Sbjct: 156 VFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQA 215
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ P+ +T+ S+LSAC +++ G ++ G+ ++ ALI MY KCG +
Sbjct: 216 EGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSD 275
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+LE F + WN +I G + AL++ EM V D IT + +LSAC+
Sbjct: 276 ALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQ 335
Query: 318 AGLVQEGCELFSRMEKDFGV 337
G +++G + S + KD G+
Sbjct: 336 LGELRKGMHVHSYI-KDNGI 354
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 4/225 (1%)
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+M A ++F M N WN M+ GY + + + +F EM+ V PD T+ +V+S
Sbjct: 67 DMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVS 126
Query: 213 ACANLGSLE---TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
A A L+ G IH G S+ + L++ Y S+E++ +VF + +D
Sbjct: 127 ASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERD 186
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V W +MI A G+ LK+L EM + + +T I LLSAC V EG +++
Sbjct: 187 VVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYN 246
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
++ K FG+ ++ ++ + + L A+E +AMP T+S
Sbjct: 247 QVGK-FGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKS 290
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 253/431 (58%), Gaps = 13/431 (3%)
Query: 46 YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA-FASCG---QMD-----HAM 96
++ TA+++ Y + ++ + +M + + A F +CG MD HA
Sbjct: 108 FLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQ 167
Query: 97 KLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
++ D+ N MI Y + G + AR +FD++ +DVVSW LI+AY G+ME
Sbjct: 168 TILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMES 227
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F + +K+++ W MVTGY ++ E ++ F +M+ ++ D +T+ V+SACA
Sbjct: 228 ASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQ 287
Query: 217 LGSLETGARIHVYATDNGL--ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
LG+++ I A +G + N +ALIDMY+KCGS +++ +VF + ++VF ++
Sbjct: 288 LGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYS 347
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+MILG A+HG ++AL+L +M + ++ + +TFIG+LSACSHAGLV++G +LF++MEK
Sbjct: 348 SMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKF 407
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
FGV +HY CMVDLLGRA L+ A++L++ MP EP + GALL AC IH + +I +
Sbjct: 408 FGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIA-Q 466
Query: 395 VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE-VNGS 453
+A K G ++ +N+YAS G+WEE ++ R ++ + G K G S E NG
Sbjct: 467 IAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGE 526
Query: 454 YHKFLAGGIGH 464
H F AG H
Sbjct: 527 IHDFFAGDTTH 537
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 160/328 (48%), Gaps = 44/328 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLR 59
M+ GV +++F L KA G + +G +H QTI G F +YV +++ +Y
Sbjct: 133 MRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCG 192
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ A KVF++M E+D+++W ++ A+A G M+ A L D +PLKD+ ++ M++GYA+
Sbjct: 193 FLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQ 252
Query: 120 IGKIHSARYIFDKV-----------------------------------------PAKDV 138
G+ A F K+ P+ +V
Sbjct: 253 NGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNV 312
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
V ++LI Y+ G ++A ++F+ M +NV ++++M+ GY + LF +M
Sbjct: 313 VVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT 372
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQ 257
++P+ +T +LSAC++ G +E G ++ G+A +P ++D+ + G +E+
Sbjct: 373 EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEE 432
Query: 258 SLEVFYKSQVK-DVFCWNAMILGLALHG 284
+L++ ++ + W A++ +HG
Sbjct: 433 ALDLVKTMPMEPNGGVWGALLGACRIHG 460
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 33/241 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F ++ N W M+ GY L E + + M+ V P T +++ AC +
Sbjct: 98 VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157
Query: 220 LETGARIHVYAT-DNGLASNPHATTALIDMYAKC-------------------------- 252
++ G ++H G AS+ + ++ID+Y KC
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217
Query: 253 -----GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
G +E + +F +KD+ W AM+ G A +G AL+ +M D ++ D++T
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
G++SAC+ G V+ + E+ FG + + ++D+ + D A ++ E
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337
Query: 367 M 367
M
Sbjct: 338 M 338
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 90/242 (37%), Gaps = 28/242 (11%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS--LEVFYKSQ 266
S+L C ++ ++H + NGL+ + T LI M K S L VF +
Sbjct: 47 SILHDCTLFSQIK---QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVN 103
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+ F W AMI G AL G + M V TF L AC A + G +
Sbjct: 104 YPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQ 163
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP----TESIL-----G 377
+ ++ G L M+DL + L A ++ + M TE I+ G
Sbjct: 164 VHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYG 223
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
+ SA + DL + D VA YA G+ +EA + M D
Sbjct: 224 DMESASGLFDDLPLKDMVAWTAMVTG--------------YAQNGRPKEALEYFQKMQDV 269
Query: 438 GI 439
G+
Sbjct: 270 GM 271
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 260/475 (54%), Gaps = 43/475 (9%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRC--IDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
+H +KTG H + +L + I+ A+ VF ++ ++ +WN+++ F+
Sbjct: 43 IHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGFSQS 102
Query: 90 GQMDHAMKL-IDLMPLKDVT----SFNIMISGYARIGKIH-----SARYI-----FDKVP 134
HA+ L ID++ + V ++ + YA++G H R I FD
Sbjct: 103 STPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFI 162
Query: 135 AK-------------------------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
D+V+WNS+I+ GE++++ ++F +M ++N
Sbjct: 163 RNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNT 222
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++WN+M++GY+R+ E +DLF +M+ +KP T+ S+L+A A LG+L+ G IH Y
Sbjct: 223 VSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDY 282
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
N N T ++IDMY KCGSI ++ +VF + +K + WN MILGLA++G A
Sbjct: 283 IRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEA 342
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
++L + S ++ DD+TF+G+L+AC+++GLV + E FS M K + + ++HY CMVD
Sbjct: 343 IQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVD 402
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LGRA LL+ A ELI MP P I +LLSAC H ++E+ R AK + S G
Sbjct: 403 TLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCG 462
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+++ +N+YA+ Q+EEA R M + I K G S+IEVNG H+F+AGG H
Sbjct: 463 YVLL-SNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFVAGGRLH 516
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 154/342 (45%), Gaps = 48/342 (14%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V ++P + KA L + G LHG+ IK G +++ ++ MY + + + +
Sbjct: 121 VQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMW 180
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
K F + + DI+AWNSM+ A CG++D + KL D MPL++ S+N MISGY R G++
Sbjct: 181 KAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLRE 240
Query: 126 ARYIFDKV------PAK---------------------------------DVVSWNSLIL 146
A +F ++ P++ +V+ S+I
Sbjct: 241 ALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIID 300
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G + +A ++F+ +K + +WNTM+ G + E + LF ++ N++PD +T
Sbjct: 301 MYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVT 360
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVFYK 264
VL+AC N L A+ + P + ++D + G +E++ E+
Sbjct: 361 FVGVLTAC-NYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRN 419
Query: 265 SQV-KDVFCWNAMILGLALHGYGYAALKLLGEM-----NDSC 300
V D W++++ HG A + + NDSC
Sbjct: 420 MPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSC 461
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 38/266 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE + ++ LL A+ L + G +H K F +V V +++ MY
Sbjct: 248 MQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGS 307
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I +AF+VFE P K + +WN+M+ A G + A++L + ++
Sbjct: 308 IGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRP----------- 356
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
D V++ ++ A +G ++KA E F M + ++ ++ M
Sbjct: 357 ----------------DDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCM 400
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R+ L E +L M V PD + +S+LSAC G++E R + D L
Sbjct: 401 VDTLGRAGLLEEAEELIRNMP---VNPDAIIWSSLLSACRKHGNVELAKRAAKHIVD--L 455
Query: 236 ASNPHATTALI-DMYAKCGSIEQSLE 260
N L+ ++YA E+++E
Sbjct: 456 DGNDSCGYVLLSNIYAASDQFEEAME 481
>gi|297803844|ref|XP_002869806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315642|gb|EFH46065.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 852
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 166/480 (34%), Positives = 261/480 (54%), Gaps = 38/480 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ +++ +L+A G + G +H Q +K G CG VYVQT L+ +Y
Sbjct: 356 MHYSGIPPSSHAITSVLRACGKMEDMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRFGY 415
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A KVF+ + EK+ ++WNS+L + G +D A ++ D +P KDV S+N++IS YA+
Sbjct: 416 IEMAKKVFDDIAEKNTVSWNSLLHGYLESGNLDEARRVFDKIPEKDVVSWNLIISSYAKK 475
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + +A +F +P K +WN LI Y N EM+ A F M KN ++W TM++GY
Sbjct: 476 GDMSNACSLFLTMPLKSSATWNILIGGYVNCREMKLARTYFDTMPQKNSVSWITMISGYT 535
Query: 181 R-------SQLYIEV------------------------VDLFDEMKAGN--VKPDYLTV 207
+ +L+ ++ + LF +M N ++PD +T+
Sbjct: 536 KLGDVQSAEKLFRQMSRKDKLVYDAMIACYAQNGKPKDALKLFSQMLESNSDIQPDEITL 595
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+SV+SA + LG G + Y T++G+ + +T+LID+Y K G ++ ++F
Sbjct: 596 SSVVSASSQLGDTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKLFNDLIK 655
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
KD ++AMI+G ++G A L EM + + + +TF GLLSA SH+GLVQEG +
Sbjct: 656 KDTVSYSAMIMGCGINGMATEANCLFREMIEKKIPPNLVTFTGLLSAYSHSGLVQEGYKC 715
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F+ M KD + +HYG MVD+LGRA L+ A ELI++MP +P + GALL A +H
Sbjct: 716 FNSM-KDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHN 774
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++E G+ +A C K G L AN+Y S G+W++A R+ M + K GS +
Sbjct: 775 NVEFGE-IACSHCVKLETDPTGYLSHLANIYTSVGRWDDARNVRDSMEEK---KLPGSKI 830
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 6/172 (3%)
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
FK + +W +V + + + E V ++ EM + P +TSVL AC + +
Sbjct: 322 FKSSKGMDSFSWGCLVRFLSQHRKFKETVGVYIEMHYSGIPPSSHAITSVLRACGKMEDM 381
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
G IH A NGL + T L+ +Y++ G IE + +VF K+ WN++
Sbjct: 382 VDGKPIHAQALKNGLCGCVYVQTGLVGLYSRFGYIEMAKKVFDDIAEKNTVSWNSL---- 437
Query: 281 ALHGYGYAA-LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
LHGY + L + D + D +++ ++S+ + G + C LF M
Sbjct: 438 -LHGYLESGNLDEARRVFDKIPEKDVVSWNLIISSYAKKGDMSNACSLFLTM 488
>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 891
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 150/407 (36%), Positives = 243/407 (59%), Gaps = 4/407 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
IDDA ++F +M E+D+++W +M+ + G++D A ++ D MP+++V S+N MI+GYA+
Sbjct: 186 IDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAMIAGYAQN 245
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+ A +F+++P +D+ SWN+++ + G++ +A ++F M KNVITW M+TGY+
Sbjct: 246 GRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYV 305
Query: 181 RSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ L E + LF++M+A + +KP T +VL AC++L L G +IH + +
Sbjct: 306 QHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQEST 365
Query: 240 HATTALIDMYAKCGSIEQSLEVFYK--SQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ +ALI+MY+KCG + ++F S D+ WN MI A HGYG A+ L +M
Sbjct: 366 YVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQ 425
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ +A+D+T++GLL+ACSHAGL EG + F + K+ + + +HY C++DL GRA L
Sbjct: 426 ELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCGRAGRL 485
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
D A+ +IE + E + S+ GALL+ C +H + +IG VA V +D L+ +N+
Sbjct: 486 DEALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGKLVADKVLKMEPENADTYLLA-SNM 544
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YAS G EEA R M G+ K G S I+V + F+ H
Sbjct: 545 YASVGMREEAANVRMKMKKKGLKKQPGCSWIDVGNTVQVFVVNDKSH 591
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 151/282 (53%), Gaps = 12/282 (4%)
Query: 56 GSLRC--IDDAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI 112
G ++C I++A K+F++ +K +I W +M+ + +++ A +L + MP+++V S+N
Sbjct: 85 GYIKCGLINEARKLFDRPDAQKSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNT 144
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
MI GYAR G+ A +F ++P ++VVSWN+++ A + G ++ A +F +M ++V++W
Sbjct: 145 MIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSW 204
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
TMV G ++ ++FD+M NV ++ ++++ A G + ++ +
Sbjct: 205 TTMVAGLSKNGRVDAAREVFDKMPIRNV----VSWNAMIAGYAQNGRFDEALKLFERMPE 260
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ S T I + G + ++ ++F+ K+V W AM+ G HG ALKL
Sbjct: 261 RDMPSWNTMVTGFI----QNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKL 316
Query: 293 LGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+M + +K TF+ +L ACS + EG ++ + K
Sbjct: 317 FNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISK 358
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 178/370 (48%), Gaps = 45/370 (12%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-PLKDVTSFNIMISGYAR 119
+++A KVF++M ++D W +M+ + CG ++ A KL D K V + M+SGY +
Sbjct: 61 VNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSVIVWTAMVSGYIK 120
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ +I A +F+++P ++VVSWN++I Y G ++A ++F +M +NV++WNT++T
Sbjct: 121 MNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTAL 180
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ LF+EM+ + D ++ T++++ + G ++ + D N
Sbjct: 181 AHCGRIDDAERLFNEMR----ERDVVSWTTMVAGLSKNGRVDAAREVF----DKMPIRNV 232
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ A+I YA+ G +++L++F + +D+ WN M+ G +G A +L M
Sbjct: 233 VSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQK 292
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V IT+ +++ GL +E +LF++M+ + G+ G V +LG
Sbjct: 293 NV----ITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTT---GTFVTVLGAC----- 340
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
S L L IHQ ++K V +S Y+ N+Y+
Sbjct: 341 --------------SDLAGLPEGQQIHQ------MISKTVFQESTYVVSA----LINMYS 376
Query: 420 SCGQWEEANR 429
CG + A +
Sbjct: 377 KCGDFHVAKK 386
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 28/205 (13%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDII--AWNSMLDAFASC--------GQMD 93
+V TA++ Y ++A K+F KM D + + + +C GQ
Sbjct: 293 NVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQI 352
Query: 94 HAMKLIDLMPLKDVT-SFNIMISGYARIGKIHSARYIFDKVPAK--DVVSWNSLILAYTN 150
H M I ++ T + +I+ Y++ G H A+ +FD + D+++WN +I AY +
Sbjct: 353 HQM--ISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAH 410
Query: 151 AGEMEKAGEMFKKM----LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
G +A +F KM N +T+ ++T + L+ E FDE+ +K Y+
Sbjct: 411 HGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDEL----LKNRYIQ 466
Query: 207 V-----TSVLSACANLGSLETGARI 226
V T ++ C G L+ I
Sbjct: 467 VREDHYTCLIDLCGRAGRLDEALNI 491
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ +F +L A L+ G +H KT F YV +AL+ MY +C D
Sbjct: 325 GLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYS--KCGD-- 380
Query: 65 FKVFEKMPEK------DIIAWNSMLDAFASCGQMDHAMKLIDLM 102
F V +KM + D+IAWN M+ A+A G + A+ L + M
Sbjct: 381 FHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKM 424
>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
Length = 748
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 166/495 (33%), Positives = 249/495 (50%), Gaps = 71/495 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY--------- 55
GV + ++F LL+A +L +HGQ ++ GF V+VQ AL+ +Y
Sbjct: 106 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGV 165
Query: 56 -GSLRCIDD------------------------AFKVFEKMPEKDIIAWNSMLDAFASCG 90
+ + D+ A FE MPE+++++WN+++ FA G
Sbjct: 166 GAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMG 225
Query: 91 QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN 150
M A + D MP ++ S+N+MISGYA G + +AR +FD++ KDVVSW +++ AY
Sbjct: 226 DMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAK 285
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTVTS 209
G+++ A E+F M VKN+++WN M+TGY + Y E + F M G +PD T+ S
Sbjct: 286 IGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVS 345
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
V+SACA LGS+E I + + + ALIDM+AKCG + ++ +FYK + +
Sbjct: 346 VVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRC 405
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ W MI G A +G AL + M V+ DD FI L+AC+H GL+QEG +F+
Sbjct: 406 IITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFN 465
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M + + + ++EHYGCMVDLLGRA L++ + I + EP S L+S C L
Sbjct: 466 EMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL--EPFNSSYQVLVSNC---SAL 520
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E G+W+ R M + GI K GSS I+
Sbjct: 521 E-------------------------------GRWDGVIDARTSMRNWGIEKVPGSSSIQ 549
Query: 450 VNGSYHKFLAGGIGH 464
V H+FLA H
Sbjct: 550 VGSEVHEFLAKDTRH 564
>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 548
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 259/490 (52%), Gaps = 38/490 (7%)
Query: 15 LLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK 74
+LLKA + +G LH + +K+ V T L+ +Y + DA +VF+ M ++
Sbjct: 60 VLLKATASRADPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDR 119
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLI-------------------------------DLMP 103
+ + N+ML +A+ G M A L + MP
Sbjct: 120 NAVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMP 179
Query: 104 L--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
L ++V ++ + + Y G + +AR +F+K+PA++ W+S++ AG ++A +F
Sbjct: 180 LGMQNVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVF 239
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
K+ V+N++ WN ++ GY + + ++ F M +KPD T+ VLSACA LGSLE
Sbjct: 240 DKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLE 299
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
++H + + + N L+DM+AKCG + + +F Q ++ CWN+MI L+
Sbjct: 300 QARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALS 359
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
HG A++L +M S K ++IT + +L AC+H G V EG +FS+ + +GV +
Sbjct: 360 SHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDI-YGVAAAV 418
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV-- 399
EHYGC+VDLLGR+ L A E+++ M EP E I G+LL AC +H D E+ + V+ +
Sbjct: 419 EHYGCLVDLLGRSGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQ 478
Query: 400 -CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
++ +D E ++ +N+ AS +WE+A R R M G+ KT G S +E+ + H+
Sbjct: 479 LHSRRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELEITEHQVC 538
Query: 459 AGGIGHLSNL 468
AG G LS L
Sbjct: 539 AGS-GTLSQL 547
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D ++ +L A L S +H I+ + +V L+ M+ +C D AF
Sbjct: 278 IKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQFVMNGLVDMFA--KCGDLAF 335
Query: 66 --KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYAR 119
+F+ M ++ WNSM+ A +S GQ A++L M + I ++
Sbjct: 336 ARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTH 395
Query: 120 IGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
G + IF K A V + L+ +G + +A E+ K MLV+ N + W +
Sbjct: 396 GGFVDEGLRIFSKFDIYGVAAAVEHYGCLVDLLGRSGRLREAYEIVKNMLVEPNEVIWGS 455
Query: 175 MV 176
++
Sbjct: 456 LL 457
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 156/500 (31%), Positives = 269/500 (53%), Gaps = 46/500 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
++ + +F LL+A+ LS + +H I TG + Y+Q L+K+Y + A+
Sbjct: 126 IYPNRSTFLFLLQASKFLSQV---MQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAY 182
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID------------------------- 100
+VF++M D +++N M+ +A G A+K +
Sbjct: 183 QVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLG 242
Query: 101 ----------------LMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
L+ ++ N ++ Y + ++ A+ IF+ + KD +SWN++
Sbjct: 243 DAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTM 302
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I Y G +E A F+ M +++++WN+++ GY + + V LF+ M A N+ PD+
Sbjct: 303 IAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDF 362
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+T+ +++SA A +G+L G IH + + + +A IDMY KCGSI+++ VF +
Sbjct: 363 VTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFRE 422
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
KDV W MI G A HGYG AL+L EM + V + +TF+ +L+ACSH+G V +G
Sbjct: 423 VTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAVLTACSHSGFVSQG 481
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
+F+ M++ +G+ +EHYGC+VDLLGR+ ++IE MP +P+ SI GA+LSAC
Sbjct: 482 LRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACR 541
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
+ ++EI + K + K +G ++ +N+YA+ G+W+ +++ R +M G+ KTAG
Sbjct: 542 AYGNIEIAEIAGKELL-KLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAG 600
Query: 445 SSVIEVNGSYHKFLAGGIGH 464
S + V+G H+F+A H
Sbjct: 601 CSSVVVDGIIHEFVAADKRH 620
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 136/312 (43%), Gaps = 52/312 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF--CGHVYVQTALLKMYGSL 58
M LG+ D ++ LL G L + +G +H + G ++ + ALL MY
Sbjct: 219 MVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKC 278
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
+ + A +F + KD I+WN+M+ +A G ++ A + MP +D+ S+N +I+GYA
Sbjct: 279 KELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYA 338
Query: 119 R-----------------------------------IGKIHSARYIFDKVPAK----DVV 139
+ IG +H R+I V D
Sbjct: 339 QKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAF 398
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
++ I Y G +++A +F+++ K+V W TM+TG+ + + LF EM+
Sbjct: 399 LGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQE-Y 457
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQS 258
V P+ +T +VL+AC++ G + G RI + G+ L+D+ + G
Sbjct: 458 VMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRF--- 514
Query: 259 LEVFYKSQVKDV 270
S+VKDV
Sbjct: 515 ------SEVKDV 520
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N+ +NTM++ S + ++ + + + P+ T +L A L + +IH
Sbjct: 96 NLYIYNTMISALSLS--LNQSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQV---MQIH 150
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+A G + L+ +Y + + + +VF + D +N MI G A G+
Sbjct: 151 CHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNI 210
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
ALK L EM +K D+ T +GLL C G Q G + + +E+
Sbjct: 211 EALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIER 256
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 175/538 (32%), Positives = 267/538 (49%), Gaps = 80/538 (14%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIG--LMLHGQTIKTGFCGHVYVQTALLKMY---GSLRC 60
+ D+YSF LL AAG L + + L +K+G G + V AL+ +Y +L
Sbjct: 153 LRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEA 212
Query: 61 IDDAFKVFEKMPEKDI-------------------------------IAWNSMLDAFASC 89
DA KV ++MP+KD + WN+M+ +
Sbjct: 213 TRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHS 272
Query: 90 GQMDHAMKLIDLM-----PLKDVT-----------------------------SF----- 110
G + A +L M PL + T +F
Sbjct: 273 GMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAA 332
Query: 111 ----NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
N +++ Y++ G I AR IFD + +KDVVSWN+++ Y + ++KA E+F++M
Sbjct: 333 LPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
KN ++W MV+GY+ + + LF+ M+A +VKP T +SAC LGSL+ G ++
Sbjct: 393 KNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQL 452
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H + G + A ALI MYA+CG+++++ +F D WNAMI L HG+G
Sbjct: 453 HGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHG 512
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL+L M + D I+F+ +L+AC+H+GLV EG + F M++DFG+ +HY
Sbjct: 513 REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTR 572
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
++DLLGRA + A +LI+ MPFEPT SI A+LS C D+E+G A + K
Sbjct: 573 LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLF-KMTPQ 631
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
DG ++ +N Y++ G+W +A R R +M D G+ K G S IE H F+ G H
Sbjct: 632 HDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKH 689
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 142/340 (41%), Gaps = 51/340 (15%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK--KMLVKNVI 170
+I Y G + +A +F P V+ SL+ AY AG + A F ++ +
Sbjct: 65 LIHLYTLSGDLPAAATLFRADPCP--VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTV 122
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLG--SLETGARIH 227
N +++ Y R+ V +F + A G+++PD + T++LSA +L S+ A++
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQ 182
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLE---VFYKSQVKDVFCWNAMILGLALHG 284
+G + AL+ +Y KC ++E + + V + KD W M++G G
Sbjct: 183 CSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRG 242
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
AA + E++ VK D+ + ++S H+G+V E ELF RM
Sbjct: 243 DVGAARSVFEEVD---VKF-DVVWNAMISGYVHSGMVVEAFELFRRM------------- 285
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV-AKMVCAKS 403
++E +P + E ++LSAC G V ++ +
Sbjct: 286 ------------------VLERVPLD--EFTFTSVLSACANAGFFAHGKSVHGQITRLQP 325
Query: 404 NYLSDGELMM---FANLYASCGQWEEANRWRNMMNDTGIV 440
N++ + L + LY+ CG A R + M +V
Sbjct: 326 NFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVV 365
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 160/468 (34%), Positives = 247/468 (52%), Gaps = 30/468 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ D + +L + +G +H IK+ F + LL MY
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGD 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A +VFEKM E+++++W SM+ + G D A+ L+ M + DV + ++
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHA 361
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
AR G + + + + D + A ++ S N+L+ Y G ME A +F M+VK++I+W
Sbjct: 362 CARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISW 421
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTMV G +KPD T+ +L ACA+L +LE G IH Y
Sbjct: 422 NTMV---------------------GELKPDSRTMACILPACASLSALERGKEIHGYILR 460
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NG +S+ H AL+D+Y KCG + + +F KD+ W MI G +HGYG A+
Sbjct: 461 NGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 520
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM D+ ++ D+++FI +L ACSH+GL+++G F M+ DF + KLEHY CMVDLL
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R L +A + IE +P P +I GALL C I+ D+E+ ++VA+ V + + G +
Sbjct: 581 RTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERV-FELEPENTGYYV 639
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ AN+YA + EE R R + G+ K G S IE+ G + F++G
Sbjct: 640 LLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSG 687
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 164/355 (46%), Gaps = 27/355 (7%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
++ +A+CG + ++ D M K+V +N M+S YA+IG + +F + K +
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI--- 196
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
E A E+F K+ ++VI+WN+M++GY+ + L + ++ +M +
Sbjct: 197 --------EGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D T+ SVL CAN G+L G +H A + + + L+DMY+KCG ++ +L V
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K ++V W +MI G G+ A+ LL +M VK D + +L AC+ +G +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSL 368
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-------------P 368
G ++ ++ + + L ++D+ + ++ A + M
Sbjct: 369 DNGKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE 427
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCG 422
+P + +L AC LE G + + ++ Y SD + +LY CG
Sbjct: 428 LKPDSRTMACILPACASLSALERGKEIHGYI-LRNGYSSDRHVANALVDLYVKCG 481
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T SVL CA L SL G ++H N + + L+ YA CG +++ VF
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLL----------------GEMNDSCVKADDITFI 309
+ K+V+ WN M+ A G ++ L E+ D D I++
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220
Query: 310 GLLSACSHAGLVQEGCELFSRM 331
++S GL + G ++ +M
Sbjct: 221 SMISGYVSNGLTERGLGIYKQM 242
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/443 (34%), Positives = 256/443 (57%), Gaps = 19/443 (4%)
Query: 23 LSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSM 82
+++S I +H +K GF +++V AL+ MY + A K+F+ M ++D+++WN++
Sbjct: 37 INASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTL 96
Query: 83 LDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYARIGKIHSA----RYIFDKVP 134
+ ++ + ++L D M ++ + + +I + +G A +YI +
Sbjct: 97 ICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNL 156
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
DV N+LI Y G + A ++F M ++VI+W +M+TGY ++ + + V LF E
Sbjct: 157 EIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQE 216
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M A VKPD +TV SVLSACA+LG L+ G +H Y +G+ ++ + +LIDMY KCG
Sbjct: 217 MMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGM 276
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+E++LEVF++ + KD W ++I GLA++G+ +AL L +M V+ TF+G+L A
Sbjct: 277 VEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLA 336
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
C+HAGLV +G E F ME G+ ++HYGC+VDLL R+ +D+A E I+ MP P
Sbjct: 337 CAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVV 396
Query: 375 ILGALLSACVIHQDLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEANR 429
+ LLSAC +H ++ + + K + C NY+ + +N YA +W++A +
Sbjct: 397 VWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYV------LLSNTYAGVDRWDDAMK 450
Query: 430 WRNMMNDTGIVKTAGSSVIEVNG 452
R +M D+ + K +GSS IEV+G
Sbjct: 451 MRELMEDSDVQKPSGSSSIEVDG 473
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
V++ N+ + + IHV+A G S + ALI MYA CG + + ++F +D
Sbjct: 30 VVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRD 89
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WN +I G + + L+L M + +KAD +T + ++ ACSH G E +
Sbjct: 90 LVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG-DWEFADSMV 148
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ K+ + + ++D+ GR L A +L + MP
Sbjct: 149 KYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMP 187
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 14/190 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M V D + +L A L +G +H + G +YV +L+ MY
Sbjct: 217 MMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGM 276
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
++ A +VF +M +KD ++W S++ A G + A+ L M + V +F ++
Sbjct: 277 VEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLA 336
Query: 117 YARIGKIHSARYIFDK-------VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKN 168
A G ++ F+ VPA + + ++ + +G ++KA E KKM +V +
Sbjct: 337 CAHAGLVNKGLEYFESMESVHGLVPA--MKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPD 394
Query: 169 VITWNTMVTG 178
V+ W +++
Sbjct: 395 VVVWRILLSA 404
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 164/463 (35%), Positives = 248/463 (53%), Gaps = 12/463 (2%)
Query: 12 SFPLLLKAAGILSSSC-IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
+ P+ LK+A L G LH +++K + +V T+LL +Y + A +VF++
Sbjct: 72 TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 131
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIMISGYARIGKIHS 125
MP + W +++ A+ G + A+ + + M T+ ++ + ARI + +
Sbjct: 132 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL-TACARIADLAT 190
Query: 126 ARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
++ A+ V + + Y GEM KA E+F KM K+ + W MV GY
Sbjct: 191 GETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYAS 250
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ E +DLF M+A +KPD V LSAC LG+L+ G + + NP
Sbjct: 251 NGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 310
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
TALIDMYAKCGS ++ VF + + KD+ WNAMILGL + G+ A L+G+M S V
Sbjct: 311 GTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGV 370
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
K +D TFIGLL +C+H GL+Q+G F M K + ++ ++EHYGCMVDLL RA LL A
Sbjct: 371 KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAH 430
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
+L++ MP ILGALL C IH++ E+ + V K + + S G +M +N+Y++
Sbjct: 431 QLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNS-GNYVMLSNIYSNR 489
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+WE+A + R M G+ K S +E G H+F G H
Sbjct: 490 GRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSH 532
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 129/296 (43%), Gaps = 27/296 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+++ +L A ++ G + + G V+V TA + +Y + A
Sbjct: 167 GMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKA 226
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARI 120
+VF+KM KD +AW +M+ +AS G A+ L M + D + +S R+
Sbjct: 227 REVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRL 286
Query: 121 GKIHSARYIFDKVPAKDVVSWN----------SLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G + R A +V W+ +LI Y G +A +F++M K++I
Sbjct: 287 GALDLGRQ------AIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDII 340
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVY 229
WN M+ G + L +M+ VK + T +L +C + G ++ G R H
Sbjct: 341 VWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNM 400
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV-FCWNAMILGLALHG 284
++ ++D+ ++ G ++++ ++ V D+ NA+ILG L G
Sbjct: 401 TKLYHISPRIEHYGCMVDLLSRAGLLQEAHQL-----VDDMPMPANAVILGALLGG 451
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 251/462 (54%), Gaps = 37/462 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
V +Y++ L+KA+ +S G L K GF HV +QT L+
Sbjct: 121 SVSPSSYTYSSLVKASSF--ASRFGESLQAHIWKFGFGFHVKIQTTLI------------ 166
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
D +++ G + A K+ D MP +D ++ M+S Y R+ +
Sbjct: 167 -------------------DFYSATGGIREARKVFDEMPERDDIAWTTMVSAYRRVLDMD 207
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SA + +++ K+ + N LI Y G +E+A +F +M VK++I+W TM+ GY +++
Sbjct: 208 SANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKR 267
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
Y E + +F +M + PD +T+++V+SACA+LG LE G +H+Y NG + + +A
Sbjct: 268 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSA 327
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMY+KCGS+E++L VF+ K++FCWN++I GLA HG+ ALK+ +M VK +
Sbjct: 328 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 387
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+TF+ + +AC+HAGLV EG ++ M D+ + +EHYG MV L +A L+ A+ELI
Sbjct: 388 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 447
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
M FEP I GALL C IH++L I + K++ + ++ G + ++YA +
Sbjct: 448 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEP--MNSGYYFLLVSMYAEQNR 505
Query: 424 WEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLAGGIGH 464
W + R M + GI K G+S I ++ H F A H
Sbjct: 506 WRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSH 547
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ D + ++ A L IG +H T++ GF VY+ +AL+ MY
Sbjct: 278 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGS 337
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
++ A VF +P+K++ WNS+++ A+ G A+K+ M ++ V +F + +
Sbjct: 338 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTA 397
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVI 170
G + R I+ D +V + ++ ++ AG + +A E+ M N +
Sbjct: 398 CTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAV 457
Query: 171 TWNTMVTG 178
W ++ G
Sbjct: 458 IWGALLDG 465
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 16/290 (5%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N I A T+ ++ A +M NV +N + G++ I ++L+ M +V
Sbjct: 64 NQFITACTSFKCLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVS 123
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P T +S++ A + + H++ G + T LID Y+ G I ++ +V
Sbjct: 124 PSSYTYSSLVKASSFASRFGESLQAHIWKF--GFGFHVKIQTTLIDFYSATGGIREARKV 181
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + +D W M+ +A L +M++ ++ T L++ G +
Sbjct: 182 FDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEK----NEATSNCLINGYMGLGNL 237
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGA 378
++ LF++M + + + M+ + + AI + M E P E +
Sbjct: 238 EQAESLFNQMP-----VKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMST 292
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEA 427
++SAC LEIG V M ++ ++ D + ++Y+ CG E A
Sbjct: 293 VISACAHLGVLEIGKEV-HMYTLQNGFVLDVYIGSALVDMYSKCGSLERA 341
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 167/441 (37%), Positives = 248/441 (56%), Gaps = 16/441 (3%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF--KVFEKMPEKDIIAWNSMLDAFASCG 90
H K + +L+ MY RC AF KVF+++P +D+++WNSM+ +A G
Sbjct: 139 HSLVFKLALHSDPHTTHSLITMYS--RCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAG 196
Query: 91 QMDHAMKLIDLMPLKD-----VTSFNIMISGYARIGKIHSARYIFDKVPAKDVV--SW-- 141
A+++ M +D S ++ +G + R++ V + + S+
Sbjct: 197 CAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIG 256
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
++LI Y G++ A +F M ++VITWN +++GY ++ + E + LF MK V
Sbjct: 257 SALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVT 316
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
+ +T+T+VLSACA +G+L+ G +I YA+ G + TALIDMYAKCGS+ + V
Sbjct: 317 ENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRV 376
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS--CVKADDITFIGLLSACSHAG 319
F + K+ WNAMI LA HG AL L M+D + +DITF+GLLSAC HAG
Sbjct: 377 FKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAG 436
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
LV EG LF M FG+ K+EHY CMVDLL RA L A +LIE MP +P + LGAL
Sbjct: 437 LVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGAL 496
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC ++++IG+RV +M+ + + + G ++ + +YA+ WE++ R R +M GI
Sbjct: 497 LGACRSKKNVDIGERVIRMIL-EVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGI 555
Query: 440 VKTAGSSVIEVNGSYHKFLAG 460
KT G S IEV H+F AG
Sbjct: 556 TKTPGCSWIEVENHLHEFHAG 576
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 118/279 (42%), Gaps = 34/279 (12%)
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
Y + LF M + ++ P+ T +CANL L H L S+PH T +
Sbjct: 97 YPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDPHTTHS 156
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKA 303
LI MY++CG + + +VF + +D+ WN+MI G A G A+++ GEM +
Sbjct: 157 LITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEP 216
Query: 304 DDITFIGLLSACSHAG-----------LVQEGCELFSRMEK----------DFGVTRKLE 342
D+++ + +L AC G +V+ G L S + D G R++
Sbjct: 217 DEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIF 276
Query: 343 H---------YGCMVDLLGRARLLDRAIELIEAMPFE-PTES--ILGALLSACVIHQDLE 390
+ ++ + + D AI L AM + TE+ L A+LSAC L+
Sbjct: 277 DGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALD 336
Query: 391 IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
+G ++ + + ++YA CG A R
Sbjct: 337 LGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQR 375
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/441 (35%), Positives = 243/441 (55%), Gaps = 31/441 (7%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ S L + L I +LH ++ G G VY+ A + Y + + A ++F
Sbjct: 75 DHLSISFSLHSCTRLPCHPIASLLHSFAVRLGHAGDVYIVNAAVSAYFTAADVASAERLF 134
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
KD+ DV ++ M++G+AR G + AR+
Sbjct: 135 SDT-SKDV----------------------------ADVVTWTTMVAGHARAGDVERARW 165
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
FD +P ++VVSWN+++ AY +AG + +A ++F M +N TW++MVTG ++S E
Sbjct: 166 FFDAMPERNVVSWNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLVQSDHCEEA 225
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NPHATTALID 247
+ +F +M A V P+ + SV+SACA L SLE G +H Y S + TA++D
Sbjct: 226 LRVFSDMVARGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSMSVILATAIVD 285
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY KCG I ++ VF V++++ WN+MI GLA++G AL L +M + V+ +DIT
Sbjct: 286 MYGKCGCIHNAIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDIT 345
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
FIGLL ACSH+GLV EG LF+RM DFG+ EHYG MVDLLGRA L+ A++ ++ M
Sbjct: 346 FIGLLGACSHSGLVDEGRWLFNRMVNDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNM 405
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P EP + GAL AC IH ++E+G+ +AK + + ++ +N+Y + +WE+
Sbjct: 406 PVEPHPGLWGALAGACNIHGEVELGEEIAKKLI-ELEPRHGSRYILLSNIYGTSSRWEDM 464
Query: 428 NRWRNMMNDTGIVKTAGSSVI 448
R ++ + + K G++V+
Sbjct: 465 ATVRRLIKERKVSKGTGNAVV 485
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/494 (31%), Positives = 268/494 (54%), Gaps = 46/494 (9%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY---GSL 58
QE G+ DN +FP +LKA + G +H IK GF ++V +L+ +Y G L
Sbjct: 402 QEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDL 461
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS--------- 109
C A +F++M KD+++WNS++ ++ + + L +LM ++V +
Sbjct: 462 VC---ARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVI 518
Query: 110 ------------------------------FNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N +I Y RIG++ SA +F ++ K+ V
Sbjct: 519 SACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTV 578
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+ N++I AY G + A ++F ++ K++I+W++M+ Y ++ + + ++LF +M+
Sbjct: 579 TLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAK 638
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
VKPD + + SVLSACA+LG+L+ G IH Y N + ++ +LIDM+AKCG ++++L
Sbjct: 639 VKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEAL 698
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF + + KD WN++ILGLA +G+ AL + M + +++TF+G+L AC++
Sbjct: 699 QVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKR 758
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
LVQEG + F RM+ + +++HYGC+V +L RA L++A I MP P + L
Sbjct: 759 LVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRIL 818
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC H ++ + + VA ++ + + G+ M+ +N+YAS +W +A R M DT +
Sbjct: 819 LGACKTHGNVAVAE-VATKKLSELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAV 877
Query: 440 VKTAGSSVIEVNGS 453
K+ SV++ S
Sbjct: 878 RKSPACSVVDSASS 891
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 190/317 (59%), Gaps = 2/317 (0%)
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P K+VVSWN +I + GE+E A +F +M +NV++W ++ GY R+ LY E V LF
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
M AG + P +TV +V+ A +NLG + G +H Y G+ S+ +LID+YAK
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 253 GSIEQSLEVFYKS-QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
GS++ SL+VF + +++ W ++I G A+HG AL+L EM + ++ + ITF+ +
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP 371
++ACSH GLV++G F M ++ + +++H+GC++D+LGRA L A ++IE +P E
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEV 240
Query: 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWR 431
+ LL C + ++E+G R KM+ + S G+ + +N+ G++ +A + R
Sbjct: 241 NVIVWRILLGCCSKYGEVEMGKRAIKMI-SDLERESGGDFAVLSNVLNELGRFSDAEQAR 299
Query: 432 NMMNDTGIVKTAGSSVI 448
++++ IVK G +++
Sbjct: 300 KLLDERKIVKVPGLALV 316
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 177/408 (43%), Gaps = 52/408 (12%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF--KVFEKMPEKDIIAWNSMLDAFASC 89
LH + +G Y + +++ Y +L+ D F KVFE++ WN++L A
Sbjct: 330 LHAHLVVSGLHNCQYAMSKVIRSY-ALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQS 388
Query: 90 GQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSARYIFDKVPAK----DVVSW 141
A+ K D +F ++ A+ + V D+
Sbjct: 389 DAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVS 448
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSLI Y G++ A +F +MLVK+V++WN+++ GY + + EV+ LF+ M+A V+
Sbjct: 449 NSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQ 508
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D +T+ V+SAC +LG + Y N + + + LID Y + G ++ + +V
Sbjct: 509 ADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKV 568
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + + K+ NAMI A G +A K+ D D I++ ++ A S A
Sbjct: 569 FSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIF----DQIPNKDLISWSSMICAYSQASHF 624
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+ ELF +M+ RA++ +P ++ ++LS
Sbjct: 625 SDSLELFRQMQ--------------------RAKV-------------KPDAVVIASVLS 651
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELM--MFANLYASCGQWEEA 427
AC L++G + V + N + +M +++A CG +EA
Sbjct: 652 ACAHLGALDLGKWIHDYV--RRNNIKTDTIMENSLIDMFAKCGCMQEA 697
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 130/275 (47%), Gaps = 53/275 (19%)
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
MP K++++WN ++ FA G++++A L D MP ++V S+ +I GY R A +F
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 131 DK----------------VPA-----------------------KDVVSWNSLILAYTNA 151
VPA D NSLI Y
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 152 GEMEKAGEMFKKML-VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
G ++ + ++F +ML +N+++W ++++G+ L +E ++LF EM+ ++P+ +T SV
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180
Query: 211 LSACANLGSLETG-----ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
++AC++ G +E G + ++ Y D + +IDM + G + ++ ++
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKH----FGCIIDMLGRAGRLCEAEQIIEGL 236
Query: 266 QVK-DVFCWNAMILGLALHG---YGYAALKLLGEM 296
V+ +V W ++ + +G G A+K++ ++
Sbjct: 237 PVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDL 271
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 107/533 (20%), Positives = 206/533 (38%), Gaps = 106/533 (19%)
Query: 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM-P 72
P + GIL +G MLHG +K G V +L+ +Y + + ++ KVF++M
Sbjct: 80 PAISNLGGIL----MGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLD 135
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PLK--------------------- 105
+++++W S++ FA G A++L M P +
Sbjct: 136 RRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLA 195
Query: 106 -------------DVTSFNIMISGYARIGKIHSARYIFDKVPAK-DVVSWNSLILAYTNA 151
++ F +I R G++ A I + +P + +V+ W L+ +
Sbjct: 196 FFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKY 255
Query: 152 GEMEKAGEMFKKMLVK-------NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
GE+E G+ KM+ + + ++ R + L DE K V
Sbjct: 256 GEVE-MGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGLA 314
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA-KCGSIEQSLEVFY 263
L VT + +E ++H + +GL + +A + +I YA + + + +VF
Sbjct: 315 LVVTR------SFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFE 368
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ + F WN ++ GLA A+ + + +K D++TF +L AC+ +E
Sbjct: 369 QIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKE 428
Query: 324 GCELFSRMEK-----DFGVTRKLEH-YGCMVDLLGRARLLDRAI---------------- 361
G ++ S + K D V+ L H Y DL+ + D +
Sbjct: 429 GEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQ 488
Query: 362 -----------ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
EL++A + + + ++SAC D + D + + + + N++
Sbjct: 489 RNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYI--ERNHIEVDV 546
Query: 411 LM--MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+ + Y GQ + A + + M D + + +N H + GG
Sbjct: 547 YLGNTLIDYYCRIGQLQSAEKVFSQMKD--------KNTVTLNAMIHAYAKGG 591
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 80/186 (43%), Gaps = 10/186 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D +L A L + +G +H + ++ +L+ M+ C
Sbjct: 634 MQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGC 693
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+ +A +VF +M EKD ++WNS++ A+ G D A+ + M P + +F ++
Sbjct: 694 MQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIA 753
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVI 170
A + F+++ + + ++ + AG++EKA +M L + +
Sbjct: 754 CANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPV 813
Query: 171 TWNTMV 176
W ++
Sbjct: 814 VWRILL 819
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/485 (32%), Positives = 270/485 (55%), Gaps = 23/485 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++L +H + +FP +K+ L C G +H Q G+ ++V +AL+ MY
Sbjct: 77 MRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGY 136
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN--------- 111
++DA K+F+++PE+++++W SM+ + + A+ L L D T ++
Sbjct: 137 LNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGV 196
Query: 112 ------IMISGYARIGKIHSARYIFDKVPAKD-----VVSWNSLILAYTNAGEMEKAGEM 160
+IS AR+ + S + K + N+L+ AY GE+ + ++
Sbjct: 197 DSVLLGCVISACARVC-VKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKV 255
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGS 219
F M +V +WN+++ Y ++ L +E LF +M K G V+ + +T+++VL ACA+ G+
Sbjct: 256 FDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGA 315
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
L+ G IH L N T+++DMY KCG +E + + F + + K+V W M+ G
Sbjct: 316 LQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAG 375
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
+HG+G A+K+ EM +K + ITF+ +L+ACSHAGL++EG F++M+ +F V
Sbjct: 376 YGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEP 435
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
+EHY CMVDLLGRA L A LI+ M +P + G+LL AC IH+++E+G+ A+ +
Sbjct: 436 GIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKL 495
Query: 400 CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
K + + G ++ +N+YA G+W++ R R +M + G++KT G S++E G H FL
Sbjct: 496 -FKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLV 554
Query: 460 GGIGH 464
G H
Sbjct: 555 GDKEH 559
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 132/285 (46%), Gaps = 33/285 (11%)
Query: 67 VFEKMPEK-DIIAWNSMLDAFASCGQMDHA------MKLIDLMP--------LKDVTSFN 111
+F K +K + +WNS++ FA G A M+ + L P +K +S
Sbjct: 41 MFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLY 100
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ +G +IH ++F D+ ++LI Y+ G + A ++F ++ +NV++
Sbjct: 101 DLCAG----KQIHQQAFVFGY--GSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVS 154
Query: 172 WNTMVTGYLRSQLYIEVVDLF-----------DEMKAGNVKPDYLTVTSVLSACANLGSL 220
W +M++GY++++ E V LF DE+ V D + + V+SACA +
Sbjct: 155 WTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVK 214
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
+H A G L+D YAKCG I S +VF + DV WN++I
Sbjct: 215 SVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVY 274
Query: 281 ALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEG 324
A +G A L +M V+ + +T +L AC+H+G +Q G
Sbjct: 275 AQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIG 319
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/549 (30%), Positives = 276/549 (50%), Gaps = 85/549 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++LG D ++ PL+++A L SS + ++H ++ GF H++V L+ MYG L
Sbjct: 123 MRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGR 182
Query: 61 IDDAFKVFEKMPEKDIIAWNSM-----------------------------------LDA 85
++DA ++F+ M + I++WN+M L +
Sbjct: 183 MEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSS 242
Query: 86 FASCGQMDHAMKLIDLMPL--------------------------KDVTSF--------- 110
A CG D ++L +M K++ +
Sbjct: 243 HARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDY 302
Query: 111 ----NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG----------EMEK 156
N +I Y + + A +F ++ K++VSWN+LI +Y +G MEK
Sbjct: 303 LFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEK 362
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
+ ++ NVI+W+ +++G+ + ++LF +M+ V + +T++SVLS CA
Sbjct: 363 SDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAE 422
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L +L G +H YA N ++ N LI+MY KCG ++ VF + +D+ WN++
Sbjct: 423 LAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSL 482
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I G +HG G AL+ EM + +K D+ITF+ +LSACSHAGLV G LF +M +F
Sbjct: 483 IGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFR 542
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA 396
+ +EHY CMVDLLGRA LL A +++ MP EP E + GALL++C +++D++I + A
Sbjct: 543 IEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETA 602
Query: 397 KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHK 456
+ + ++ G M+ +N+YA+ G+W+++ R R G+ K G S IEV +
Sbjct: 603 SQILTLKSKIT-GSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQSWIEVRKKVYT 661
Query: 457 FLAGGIGHL 465
F AG + H
Sbjct: 662 FSAGNLVHF 670
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 170/382 (44%), Gaps = 59/382 (15%)
Query: 6 VHADN--YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
VH D YSF + L + LH Q + T ++ L+ +Y +
Sbjct: 25 VHNDELIYSFHAFFQRCFTLQQA---RQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSH 81
Query: 64 AFKVFEKMPEKDI---IAWNSMLDAFASCGQMDHAMKL------IDLMP--------LKD 106
A KVF+ +P + + + WNS++ A S G HA++L + +P ++
Sbjct: 82 ARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRA 141
Query: 107 VTSF-------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
+S N ++ Y ++G++ AR +FD + + +VSW
Sbjct: 142 CSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSW 201
Query: 142 NSLILAYTNAGEMEKAGEMFKKM----LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
N+++ Y + A +FK+M L N +TW ++++ + R LY E ++LF M+
Sbjct: 202 NTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRT 261
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
++ + VLS CA++ ++ G IH Y G ALI Y K +
Sbjct: 262 RGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGD 321
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGY---GYAALKLLGEMND----SCVKADDITFIG 310
+ +VF + + K++ WNA+I A G YAA L E +D S V+ + I++
Sbjct: 322 AHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAF-LHMEKSDSDDHSLVRPNVISWSA 380
Query: 311 LLSACSHAGLVQEGCELFSRME 332
++S ++ G ++ ELF +M+
Sbjct: 381 VISGFAYKGRGEKSLELFRQMQ 402
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/418 (36%), Positives = 240/418 (57%), Gaps = 21/418 (5%)
Query: 63 DAFKVFEKMPEKDI----IAWNSMLDAFASCGQMDHAMKL--------IDLMPLKDVTSF 110
+AF++F +M K I + S+L A A+ G H + D +P +
Sbjct: 279 EAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVN 338
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +++ Y++ GKI A IFD + KDVVSWN+++ Y +G ++ A +FK+M K+ +
Sbjct: 339 NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSEL 398
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W MV+GY+ L + + LF++M++ +VKP T ++AC LG+L+ G ++H +
Sbjct: 399 SWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHL 458
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G ++ A AL+ MYA+CG+++ + VF D WNAMI L HG+G AL
Sbjct: 459 VQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREAL 518
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L +M + D I+F+ +L+AC+HAGLV +G + F ME+DFG++ +HY ++DL
Sbjct: 519 ELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDL 578
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYL 406
LGRA + A +LI+ MPFEPT +I A+LS C I+ D+E+G D++ KMV
Sbjct: 579 LGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEH---- 634
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
DG ++ +N Y++ G+W +A R R +M D G+ K G S IEV H FL G H
Sbjct: 635 -DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKH 691
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 145/295 (49%), Gaps = 22/295 (7%)
Query: 52 LKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLD-AFASCGQMDHAMKLIDLMPLKDVTSF 110
+ ++ SL DD+ + + + A M D A + C Q+ A+ + + V+
Sbjct: 142 VSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVS-- 199
Query: 111 NIMISGYARI---GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
N +I+ Y + G AR + D++P KD ++W ++++ + G++ A F+++ +
Sbjct: 200 NALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGE 259
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+ WN M++GY++S + E +LF M + + PD T TS+LSACAN G G +H
Sbjct: 260 FDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVH 319
Query: 228 --------VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+ + L N AL+ +Y+K G I + ++F +KDV WN ++ G
Sbjct: 320 GQFIRLQPDFVPEAALPVN----NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSG 375
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
G A ++ EM +++++ ++S H GL ++ +LF++M +
Sbjct: 376 YIESGCLDNAARIFKEMP----YKSELSWMVMVSGYVHGGLAEDALKLFNQMRSE 426
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 14/190 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V +Y++ + A G L + G LH ++ GF ALL MY
Sbjct: 423 MRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGA 482
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+ DA VF MP D ++WN+M+ A G A++L D M + D SF +++
Sbjct: 483 VKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTA 542
Query: 117 YARIGKIHSARYIFDKV-------PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
G + F+ + P +D + LI AG + +A ++ K M +
Sbjct: 543 CNHAGLVDDGFQYFESMERDFGISPGED--HYARLIDLLGRAGRIGEARDLIKTMPFEPT 600
Query: 170 IT-WNTMVTG 178
W +++G
Sbjct: 601 PAIWEAILSG 610
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/508 (31%), Positives = 271/508 (53%), Gaps = 47/508 (9%)
Query: 1 MQELGVHADNYSFPLLLKA----AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYG 56
M G D Y+FP LLKA AG S+ +H ++ G + +V ++L+ Y
Sbjct: 10 MLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYT 69
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDA------------------------------- 85
+ A + + +AWN+++
Sbjct: 70 AGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVS 127
Query: 86 -FASCGQ--------MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK 136
++CG+ M +++ L D+ N ++ YA + SA +FD + +
Sbjct: 128 VLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVR 187
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
VVSW SL+ G++++A ++F +M ++ ++W M+ GY+ + + E +++F EM+
Sbjct: 188 SVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQ 247
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
NV D T+ SV++ACA LG+LE G + VY + G+ + ALIDMY+KCGSIE
Sbjct: 248 YSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIE 307
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
++L+VF +D F W A+ILGLA++GY A+++ M D++TFIG+L+AC+
Sbjct: 308 RALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACT 367
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
HAGLV +G E F M + + + + HYGC++DLLGRA + A++ I+ MP P +I
Sbjct: 368 HAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIW 427
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
G LL+AC +H + EIG+ VA+ + + + + ++ +N+YA C +WE+ R R+ + +
Sbjct: 428 GTLLAACRVHGNSEIGELVAERLL-ELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIME 486
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
GI K G S+IE++G H+F+AG H
Sbjct: 487 KGIKKEPGCSLIEMDGIIHEFVAGDQSH 514
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 177/546 (32%), Positives = 273/546 (50%), Gaps = 96/546 (17%)
Query: 6 VHADNYSFPLLLKAAG----ILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
+ D+YSF L+ A G + + C LH +K+G + V AL+ +Y ++C
Sbjct: 157 LRPDDYSFTALISAVGQMHNLAAPHCT--QLHCSVLKSGAAAVLSVSNALIALY--MKCD 212
Query: 62 D-----DAFKVFEKMPEKDI-------------------------------IAWNSMLDA 85
DA KV ++MP+KD + WN+M+
Sbjct: 213 TPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISG 272
Query: 86 FASCGQMDHAMKLIDLM-----PLKDVT-----------------------------SF- 110
+ G A +L M PL + T +F
Sbjct: 273 YVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFV 332
Query: 111 --------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK 162
N +++ Y++ GKI A+ IFD + KDVVSWN+++ Y ++G ++KA E+FK
Sbjct: 333 PEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFK 392
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
M KN ++W MV+GY+ L + + LF++M+A +VKP T ++AC LG+L+
Sbjct: 393 VMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKH 452
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G ++H + G ++ A AL+ MYAKCG++ + VF D WNAMI L
Sbjct: 453 GRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQ 512
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
HG+G AL+L +M + D I+F+ +L+AC+HAGLV EG F M++DFG++ +
Sbjct: 513 HGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGED 572
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKM 398
HY ++DLLGR+ + A +LI+ MPFEPT SI A+LS C + D+E G D++ +M
Sbjct: 573 HYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRM 632
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ DG ++ +N Y++ G+W +A R R +M D G+ K G S IEV H FL
Sbjct: 633 IPQH-----DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFL 687
Query: 459 AGGIGH 464
G H
Sbjct: 688 VGDTKH 693
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 252/464 (54%), Gaps = 36/464 (7%)
Query: 32 LHGQTIKTG-----FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF 86
+H Q ++TG F + A L + SL D A +VF+++P ++ WN+++ A+
Sbjct: 54 IHAQMLRTGLFFDPFSASRLITAAALSPFPSL---DYAQQVFDQIPHPNLYTWNTLIRAY 110
Query: 87 ASCGQMDHAM----KLIDLMP-LKDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKD 137
AS ++ +++ P D +F +I + + ++ + + + + D
Sbjct: 111 ASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSD 170
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V NSLI Y GE+ +F ++V++WN+M+T +++ E ++LF EM+
Sbjct: 171 VFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMET 230
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
NVKP+ +T+ VLSACA E G +H Y N + + + A++DMY KCGS+E
Sbjct: 231 QNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVED 290
Query: 258 SLEVFYKSQVKDVFCWNAMILG------------LALHGYGYAALKLLGEMNDSCVKADD 305
+ +F K KD+ W M++G LA+HG+G A+ L +M + VK +
Sbjct: 291 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNA 350
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+TF +L ACSH GLV+EG F++ME +GV ++HY CMVD+LGRA LL+ A+ELIE
Sbjct: 351 VTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIE 410
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE---LMMFANLYASCG 422
MP P S+ GALL AC IH+++ + A+ C++ L G ++ +N+YA G
Sbjct: 411 KMPMAPAASVWGALLGACTIHENVVL----AEQACSQLIELEPGNHGAYVLLSNIYAKAG 466
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
+W+ + R +M D G+ K G S IEV+G H+FL G H S
Sbjct: 467 KWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPS 510
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 30/302 (9%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D ++FP L+KAA L G HG IK V++ +L+ Y + ++V
Sbjct: 134 PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRV 193
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYARIGKI 123
F P +D+++WNSM+ AF G + A++L M ++V I ++S A+
Sbjct: 194 FVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDF 253
Query: 124 HSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
R++ + + N+++ YT G +E A +F KM K++++W TM+ GY
Sbjct: 254 EFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGY 313
Query: 180 LRSQLY------------IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+ Y + + LF +M+ VKP+ +T T++L AC+++G +E G
Sbjct: 314 AKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFF 373
Query: 228 -----VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLA 281
VY G+ ++D+ + G +E+++E+ K W A++
Sbjct: 374 NQMELVYGVLPGVKH----YACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACT 429
Query: 282 LH 283
+H
Sbjct: 430 IH 431
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 44/268 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V + + +L A S G +H + + + A+L MY
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGS 287
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA ++F+KMPEKDI++W +ML +A G+ D A L + G+ +
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGL--------------AMHGHGKD 333
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
++ DKV + V++ +++ A ++ G +E+ F +M ++ V + M
Sbjct: 334 AIALFSKMQEDKV-KPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACM 392
Query: 176 VTGYLRSQLYIEVVDLFDEM---KAGNVKPDYL-------TVTSVLSACANLGSLETGAR 225
V R+ L E V+L ++M A +V L V AC+ L LE G
Sbjct: 393 VDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPG-- 450
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCG 253
N A L ++YAK G
Sbjct: 451 ------------NHGAYVLLSNIYAKAG 466
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/474 (32%), Positives = 258/474 (54%), Gaps = 41/474 (8%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +H Q I+ G ++ LL+ ID A ++F+ ++ + +++D F S
Sbjct: 66 LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSS 125
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISG--------------------------------- 116
G A++L M + N +++
Sbjct: 126 GNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVR 185
Query: 117 ------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
Y + G++ AR +F+++P +DVV+ +I +Y++ G +E+AG +F ++ K+ +
Sbjct: 186 LRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTV 244
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
W M+ G++R++ ++ F M+ NV+P+ T+ VLSAC+ LG+LE G +H Y
Sbjct: 245 CWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM 304
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ N ALI+MY++CGSI+++ VF + + +DV +N MI GL+++G A+
Sbjct: 305 RKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAI 364
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L M ++ ++TF+G+L+ACSH GLV G ++F M +D+GV ++EHYGCMVDL
Sbjct: 365 ELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDL 424
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGR L+ A +LI M P +LG LLSAC +H++LE+G++VAK V G
Sbjct: 425 LGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAK-VLEDRGQADSGT 483
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +++YAS G+W+EA + R M + G+ K G S IEVN H+FL G + H
Sbjct: 484 YVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRH 537
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V + ++ +L A L + IG +H K +++V AL+ MY
Sbjct: 269 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGS 328
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID+A VF++M ++D+I +N+M+ + G+ A++L +M + + N+ G
Sbjct: 329 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVG---- 384
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
++ A ++ G ++ ++F M + + + M
Sbjct: 385 -----------------------VLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCM 421
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R E DL MK + PD++ + ++LSAC +LE G ++ D G
Sbjct: 422 VDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQ 478
Query: 236 ASNPHATTALID-MYAKCGSIEQSLEVFYK 264
A + T L+ +YA G +++ +V K
Sbjct: 479 ADS--GTYVLLSHVYASSGKWKEAAQVRAK 506
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/466 (34%), Positives = 246/466 (52%), Gaps = 48/466 (10%)
Query: 46 YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM--- 102
++ TALL YG+L A +F++MP + ++A +M A A GQ A+ L M
Sbjct: 47 HLPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIAD 106
Query: 103 ---------------------------PLKDVTSFNI-------------MISGYARIGK 122
P + V +F + +I Y G+
Sbjct: 107 GFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGE 166
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ AR +FD +P K ++WN+++ Y ++E A +F M ++V++WNT++ GY
Sbjct: 167 MTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLV 226
Query: 183 QLYIEVVDLFDEM---KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
E + LF +M + V P+ T+++VLSACA G LETG +H+Y N + N
Sbjct: 227 GRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNG 286
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHGYGYAALKLLGEMND 298
LIDMYAKCGSI+++L+VF K+ K D++ W +I GLA+HG L++ M D
Sbjct: 287 TLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQD 346
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
S + DD+TF+G+L+AC+H GLV EG F M++ + +T K+EHYGCM+DLLGR L
Sbjct: 347 SGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLP 406
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A +I+ MP +P I GA LSAC +H +E+G+ A V + + +M +++Y
Sbjct: 407 EAYRMIQTMPMKPNMVIWGAFLSACKVHSSVELGEIAAAEV-TRLDPDDPWARVMMSSMY 465
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
A W R R MN + KT G S + ++G H+F+AGG H
Sbjct: 466 AKAQDWSGLARERREMNSLQMKKTPGCSSVALDGEVHEFVAGGNQH 511
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 53/330 (16%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCI-----GLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
G DN + ++L AA + SC G M+H + G V+V T L+++YG
Sbjct: 107 GFMPDNVALAVVL-AACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERG 165
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ A +VF+ MP K IAWN+M+ + ++ A +L MP +DV S+N +I+GY
Sbjct: 166 EMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCL 225
Query: 120 IGKIHSARYIFDKV--PAKDVVSWNS---------------------------------- 143
+G+ A +F ++ P+ V N
Sbjct: 226 VGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDN 285
Query: 144 ------LILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
LI Y G ++KA ++F+K K ++ +W T++ G +V+ +F M+
Sbjct: 286 GTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQ 345
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT--ALIDMYAKCGS 254
+ PD +T VL+ACA+ G ++ G H Y+ P +ID+ + G
Sbjct: 346 DSGMCPDDVTFVGVLNACAHGGLVDEGLH-HFYSMQEKYRITPKIEHYGCMIDLLGRVGR 404
Query: 255 IEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
+ ++ + +K ++ W A + +H
Sbjct: 405 LPEAYRMIQTMPMKPNMVIWGAFLSACKVH 434
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 179/581 (30%), Positives = 271/581 (46%), Gaps = 123/581 (21%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V +NY+FP LKA L+ G +H I G ++V TALL MY C+ DA
Sbjct: 121 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 180
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------------------KLIDLMPL--- 104
+F MP +D++AWN+ML +A G HA+ L+ L+PL
Sbjct: 181 HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 240
Query: 105 -------KDVTSFNI-----------------------MISGYARIGKIHSARYIFDKVP 134
V ++ I ++ YA+ G + AR +FD +P
Sbjct: 241 QGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 300
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK--------------------------- 167
A++ V+W++LI + M +A +FK ML +
Sbjct: 301 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGE 360
Query: 168 -------------NVITWNTMVTGYLRSQLYIEVVDLFDE-------------------- 194
++ N++++ Y ++ L + + LFDE
Sbjct: 361 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 420
Query: 195 -----------MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
M+A NV+PD T+ S++ AC++L +L+ G H GLAS
Sbjct: 421 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 480
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
ALIDMYAKCG I+ S +VF +D+ WN MI G +HG G A L EMN+
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 540
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D +TFI LLSACSH+GLV EG F M +G+T ++EHY CMVDLL R LD A E
Sbjct: 541 DGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 600
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I++MP + ALL AC +++++++G +V++M+ + G ++ +N+Y++ G+
Sbjct: 601 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI-QELGPEGTGNFVLLSNIYSAAGR 659
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++EA R + G K+ G S IE+NGS H F+ G H
Sbjct: 660 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 700
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV--VDLFDEMKAGNVKPDYLTVT 208
+G + +A +F ++ +V T+N ++ Y S + L+ M V P+ T
Sbjct: 70 SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
L AC+ L G IH +A GL ++ +TAL+DMY KC + + +F +
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189
Query: 269 DVFCWNAMILGLALHG-YGYAALKLLG-EMNDSCVKADDITFIGLLSACSHAGLVQEG 324
D+ WNAM+ G A HG Y +A LL +M ++ + T + LL + G + +G
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 104/254 (40%), Gaps = 21/254 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + L+ A L++ G HG I G + AL+ MY
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 491
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----DLMPLKDVTSFNIMISG 116
ID + +VF MP +DI++WN+M+ + G A L +L D +F ++S
Sbjct: 492 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 551
Query: 117 YARIGKI-------HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
+ G + H R+ + P + + ++ + G +++A E + M ++ +
Sbjct: 552 CSHSGLVIEGKHWFHVMRHGYGLTPRME--HYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609
Query: 169 VITWNTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V W ++ Y L +V + E+ +++ ++++ SA G + A
Sbjct: 610 VRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTG-NFVLLSNIYSAA---GRFDEAAE 665
Query: 226 IHVYATDNGLASNP 239
+ + G +P
Sbjct: 666 VRIIQKVQGFKKSP 679
>gi|242048094|ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
gi|241925170|gb|EER98314.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
Length = 601
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 170/504 (33%), Positives = 253/504 (50%), Gaps = 81/504 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY----- 55
M+ GV + ++F LL+A L + +HGQ ++ GF V VQ ALL +Y
Sbjct: 103 MRAAGVSPNGFTFTFLLRACESLRRLPLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCGD 162
Query: 56 ----GSLRCIDD-------------------------AFKVFEKMPEKDIIAWNSMLDAF 86
G R + D A ++FE +PE+++++WN+++ AF
Sbjct: 163 PGDVGVARKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWNTIVAAF 222
Query: 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
G M A + D MP++D S+N+MISGYA G + SAR +FD + KDVVSW +++
Sbjct: 223 TRAGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVVSWTAMVS 282
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYL 205
AY G+++ A +F +M KN+++WN M+TGY + Y E + F +M G PD
Sbjct: 283 AYAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEA 342
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT----TALIDMYAKCGSIEQSLEV 261
T+ SV+SACA LGS+E I Y + SN H T ALIDM+AKCG + ++
Sbjct: 343 TLVSVVSACAQLGSVEYCNWISSYISK----SNTHITVALGNALIDMFAKCGDVGRARLA 398
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K + + V W MI G A +G AL + ++ V DD FI L+AC+H GL+
Sbjct: 399 FDKMKTRCVITWTTMISGFAYNGQFREALLIYSDICREGVTLDDTIFIAALAACAHGGLL 458
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR-AIELIEAMPFEPTESILGALL 380
QEG +F +M + +G+ ++EHYGC+VDLLGRA L + + ++E PF + +L
Sbjct: 459 QEGWSIFKQMVEHYGIVPRMEHYGCIVDLLGRAELTEYVSARVVEIEPFNSSYQVL---- 514
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+N A G+W R + D G+
Sbjct: 515 ---------------------------------VSNCSALEGRWGSVMDARKTLRDRGVE 541
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
KT GSS+I+V H+FLA H
Sbjct: 542 KTPGSSLIQVGNEVHEFLAKDTRH 565
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 167/492 (33%), Positives = 257/492 (52%), Gaps = 42/492 (8%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
PL+LK+ + ++SC G H + G G V+VQTAL+ Y +D A FE+MP
Sbjct: 81 IPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMP 140
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
KD I N ++ ++ G ++ A +L D MP K S+N MI+ YA G+ A +FD+
Sbjct: 141 IKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQ 200
Query: 133 V--------------------------------------PAKDVVSWNSLILAYTNAGEM 154
+ ++V+ +L+ Y +
Sbjct: 201 MLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAI 260
Query: 155 EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
++A F +M ++V+ W+TM+ GY + E ++LF+ MKA N KP+ +T+ VLSAC
Sbjct: 261 DEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 320
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
A LGS E G +I Y L + +ALIDMY KCG + ++ +VF++ + K V WN
Sbjct: 321 AQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWN 380
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+MI GLAL+G+ A+ L GEM V+ ++ITF+ LL+AC+HAGLV +G F M+K+
Sbjct: 381 SMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKN 440
Query: 335 FG-VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD 393
+ ++EH C+VDLL ++ L A + I M EP I LLSAC H D+E+
Sbjct: 441 KQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAK 500
Query: 394 RVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
A K+V + N S ++ +N+YA G W + R++M + K + S IE++G
Sbjct: 501 LAAGKLVVLEPN--SSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDG 558
Query: 453 SYHKFLAGGIGH 464
H+FL H
Sbjct: 559 EVHRFLVQDTYH 570
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 248/463 (53%), Gaps = 12/463 (2%)
Query: 12 SFPLLLKAAGILSSSC-IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
+ P+ LK+A L G LH +++K + +V T+LL +Y + A +VF++
Sbjct: 527 TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 586
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIMISGYARIGKIHS 125
MP + W +++ A+ G + A+ + + M T+ ++ + ARI + +
Sbjct: 587 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL-TACARIADLAT 645
Query: 126 ARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
++ A+ V + + Y GEM KA E+F KM K+ + W MV GY
Sbjct: 646 GETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYAS 705
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ E +DLF M+A +KPD V LSAC LG+L+ G + + NP
Sbjct: 706 NGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 765
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
TALIDMYAKCGS ++ VF + + KD+ WNAMILGL + G+ A L+G+M S V
Sbjct: 766 GTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGV 825
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
K +D TFIGLL +C+H GL+Q+G F M K + ++ ++EHYGCMVDLL RA LL A
Sbjct: 826 KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAH 885
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
+L++ MP ILGALL C IH++ E+ + V K + + + G +M +N+Y++
Sbjct: 886 QLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPW-NSGNYVMLSNIYSNR 944
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+WE+A + R M G+ K S +E G H+F G H
Sbjct: 945 GRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSH 987
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 127/295 (43%), Gaps = 25/295 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+++ +L A ++ G + + G V+V TA + +Y + A
Sbjct: 622 GMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKA 681
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARI 120
+VF+KM KD +AW +M+ +AS G A+ L M + D + +S R+
Sbjct: 682 REVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRL 741
Query: 121 GKIHSARYIFDKVPAKDVVSWN----------SLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G + R A +V W+ +LI Y G +A +F++M K++I
Sbjct: 742 GALDLGRQ------AIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDII 795
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVY 229
WN M+ G + L +M+ VK + T +L +C + G ++ G R H
Sbjct: 796 VWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNM 855
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
++ ++D+ ++ G ++++ ++ + NA+ILG L G
Sbjct: 856 TKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPA----NAVILGALLGG 906
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 252/431 (58%), Gaps = 13/431 (3%)
Query: 46 YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA-FASCG---QMD-----HAM 96
++ TA+++ Y + ++ + +M + + A F +CG MD HA
Sbjct: 108 FLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQ 167
Query: 97 KLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
++ D+ N MI Y + G + AR +FD++ +DVVSW LI+AY G+ME
Sbjct: 168 TILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMES 227
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F + K+++ W MVTGY ++ E ++ F +M+ ++ D +T+ V+SACA
Sbjct: 228 ASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQ 287
Query: 217 LGSLETGARIHVYATDNGL--ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
LG+++ I A +G + N +ALIDMY+KCGS +++ +VF + ++VF ++
Sbjct: 288 LGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYS 347
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+MILG A+HG ++AL+L +M + ++ + +TFIG+LSACSHAGLV++G +LF++MEK
Sbjct: 348 SMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKF 407
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
FGV +HY CMVDLLGRA L+ A++L++ MP EP + GALL AC IH + +I +
Sbjct: 408 FGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIA-Q 466
Query: 395 VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE-VNGS 453
+A K G ++ +N+YAS G+WEE ++ R ++ + G K G S E NG
Sbjct: 467 IAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGE 526
Query: 454 YHKFLAGGIGH 464
H F AG H
Sbjct: 527 IHDFFAGDTTH 537
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 159/328 (48%), Gaps = 44/328 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLR 59
M+ GV +++F L KA G + +G +H QTI G F +YV +++ +Y
Sbjct: 133 MRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCG 192
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ A KVF++M E+D+++W ++ A+A G M+ A L D +P KD+ ++ M++GYA+
Sbjct: 193 FLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQ 252
Query: 120 IGKIHSARYIFDKV-----------------------------------------PAKDV 138
G+ A F K+ P+ +V
Sbjct: 253 NGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNV 312
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
V ++LI Y+ G ++A ++F+ M +NV ++++M+ GY + LF +M
Sbjct: 313 VVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT 372
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQ 257
++P+ +T +LSAC++ G +E G ++ G+A +P ++D+ + G +E+
Sbjct: 373 EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEE 432
Query: 258 SLEVFYKSQVK-DVFCWNAMILGLALHG 284
+L++ ++ + W A++ +HG
Sbjct: 433 ALDLVKTMPMEPNGGVWGALLGACRIHG 460
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F ++ N W M+ GY L E + + M+ V P T +++ AC +
Sbjct: 98 VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157
Query: 220 LETGARIHVYAT-DNGLASNPHATTALIDMYAKC-------------------------- 252
++ G ++H G AS+ + ++ID+Y KC
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217
Query: 253 -----GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
G +E + +F KD+ W AM+ G A +G AL+ +M D ++ D++T
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
G++SAC+ G V+ + E+ FG + + ++D+ + D A ++ E
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337
Query: 367 M 367
M
Sbjct: 338 M 338
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 89/242 (36%), Gaps = 28/242 (11%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS--LEVFYKSQ 266
S+L C ++ ++H + NGL+ + T LI M K S L VF +
Sbjct: 47 SILHDCTLFSQIK---QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVN 103
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+ F W AMI G AL G + M V TF L AC A + G +
Sbjct: 104 YPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQ 163
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP----TESIL-----G 377
+ ++ G L M+DL + L A ++ + M TE I+ G
Sbjct: 164 VHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYG 223
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
+ SA + DL D VA YA G+ +EA + M D
Sbjct: 224 DMESASGLFDDLPSKDMVAWTAMVTG--------------YAQNGRPKEALEYFQKMQDV 269
Query: 438 GI 439
G+
Sbjct: 270 GM 271
>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 235/407 (57%), Gaps = 4/407 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID+A +FE+MP KD+I+W +M+D A G++D A +L D MP +++ S+N MI+GY
Sbjct: 187 IDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYN 246
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+I A +F +P +D SWN++I + E+ +A +F +M KNVI+W M+TGY+
Sbjct: 247 NRIDEADQLFQVMPERDFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYV 306
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E + +F +M + G VKP+ T S+LSAC++L L G +IH + + N
Sbjct: 307 ENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQENE 366
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMN 297
T+ALI+MY+K G + + ++F V +D+ WN+MI A HG+G A+++ +M
Sbjct: 367 VVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMR 426
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
K ++T++ LL ACSHAGLV++G E F + +D + + EHY C+VDL GRA L
Sbjct: 427 KHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDLCGRAGRL 486
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
+ I + S GA+LSAC +H ++ I V K V ++ G +M +N+
Sbjct: 487 KDVLNFINCDDARLSRSFYGAILSACNVHSEVSIAKEVVKKVL-ETGSDDAGTYVMMSNI 545
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ G+ E+A R M + G+ K G S +++ H F+ G H
Sbjct: 546 YAASGKREKAAEMRMKMKEKGLKKQPGCSWVKIGNQTHLFVVGDKSH 592
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 161/316 (50%), Gaps = 13/316 (4%)
Query: 12 SFPLLLKAAGILSSSC-IGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKVFE 69
S P + + ++ C +G + + + G V T ++ Y L + +A ++F+
Sbjct: 42 SKPRVPRPEWLIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFD 101
Query: 70 KM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++ K+++ W +M+ + Q+ A L MP +++ S+N MI GYA+ G+I A
Sbjct: 102 RVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALE 161
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD++P ++ VSWN++I A G +++A +F++M +K+VI+W MV G ++ E
Sbjct: 162 LFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEA 221
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
LFD M N+ ++ ++++ ++ ++ + AS +I
Sbjct: 222 RRLFDCMPERNI----ISWNAMITGYTYNNRIDEADQLFQVMPERDFAS----WNTMITG 273
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDIT 307
+ + I ++ +F + K+V W AMI G + ALK+ +M D CVK + T
Sbjct: 274 FIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGT 333
Query: 308 FIGLLSACSH-AGLVQ 322
++ +LSACS AGLV+
Sbjct: 334 YVSILSACSDLAGLVE 349
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 20/258 (7%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVIT 171
+I ++GK+ AR +FD +P +DVV+W +I Y G M +A E+F ++ KNV+T
Sbjct: 52 LIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVT 111
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W MV+GYLRS+ LF EM N+ ++ +++ A G ++ +
Sbjct: 112 WTAMVSGYLRSKQLSVAETLFQEMPERNI----VSWNTMIDGYAQSGRIDKALELF---- 163
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
D N + +I + G I++++ +F + +KDV W AM+ GLA +G A +
Sbjct: 164 DEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARR 223
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDL 350
L M + + I++ +++ ++ + E +LF M E+DF + M+
Sbjct: 224 LFDCMPERNI----ISWNAMITGYTYNNRIDEADQLFQVMPERDFA------SWNTMITG 273
Query: 351 LGRARLLDRAIELIEAMP 368
R R ++RA L + MP
Sbjct: 274 FIRNREINRACGLFDRMP 291
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 248/463 (53%), Gaps = 12/463 (2%)
Query: 12 SFPLLLKAAGILSSSC-IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
+ P+ LK+A L G LH +++K + +V T+LL +Y + A +VF++
Sbjct: 551 TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 610
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIMISGYARIGKIHS 125
MP + W +++ A+ G + A+ + + M T+ ++ + ARI + +
Sbjct: 611 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL-TACARIADLAT 669
Query: 126 ARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
++ A+ V + + Y GEM KA E+F KM K+ + W MV GY
Sbjct: 670 GETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYAS 729
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ E +DLF M+A +KPD V LSAC LG+L+ G + + NP
Sbjct: 730 NGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 789
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
TALIDMYAKCGS ++ VF + + KD+ WNAMILGL + G+ A L+G+M S V
Sbjct: 790 GTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGV 849
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
K +D TFIGLL +C+H GL+Q+G F M K + ++ ++EHYGCMVDLL RA LL A
Sbjct: 850 KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAH 909
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
+L++ MP ILGALL C IH++ E+ + V K + + + G +M +N+Y++
Sbjct: 910 QLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPW-NSGNYVMLSNIYSNR 968
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+WE+A + R M G+ K S +E G H+F G H
Sbjct: 969 GRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSH 1011
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 127/295 (43%), Gaps = 25/295 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+++ +L A ++ G + + G V+V TA + +Y + A
Sbjct: 646 GMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKA 705
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARI 120
+VF+KM KD +AW +M+ +AS G A+ L M + D + +S R+
Sbjct: 706 REVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRL 765
Query: 121 GKIHSARYIFDKVPAKDVVSWN----------SLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G + R A +V W+ +LI Y G +A +F++M K++I
Sbjct: 766 GALDLGRQ------AIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDII 819
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVY 229
WN M+ G + L +M+ VK + T +L +C + G ++ G R H
Sbjct: 820 VWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNM 879
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
++ ++D+ ++ G ++++ ++ + NA+ILG L G
Sbjct: 880 TKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPA----NAVILGALLGG 930
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/470 (34%), Positives = 242/470 (51%), Gaps = 46/470 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
V D+Y+FP +LKA + IG +HG K G ++V L+ MYG
Sbjct: 135 NVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK------- 187
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
CG + A ++D M +DV S+N ++ GYA+ +
Sbjct: 188 ------------------------CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFD 223
Query: 125 SARYIFDKVPA----KDVVSWNSLILAYTNAG--EMEKAGEMFKKMLVKNVITWNTMVTG 178
A + ++ + D + SL+ A +N + +MF KM K++++WN M+
Sbjct: 224 DALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGV 283
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y+++ + +E V+L+ M+A +PD +++TSVL AC + +L G +IH Y L N
Sbjct: 284 YMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPN 343
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
ALIDMYAKCG +E++ +VF + +DV W AMI G G A+ L ++ D
Sbjct: 344 LLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQD 403
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
S + D I F+ L+ACSHAGL++EG F M + +T +LEH CMVDLLGRA +
Sbjct: 404 SGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVK 463
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMF 414
A I+ M EP E + GALL AC +H D +IG D++ ++ +S Y ++
Sbjct: 464 EAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGY-----YVLL 518
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G+WEE RN+M G+ K G+S +EVN H FL G H
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 164/368 (44%), Gaps = 48/368 (13%)
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-MISGYARIGKIHSAR 127
+K P++ + +LD + + I L L+ +S + ++ YA + + SAR
Sbjct: 35 QKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASAR 94
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD++P + NVI N M+ Y+ + Y E
Sbjct: 95 KVFDEIPER-------------------------------NVIIINVMIRSYVNNGFYGE 123
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
V +F M NV+PD+ T VL AC+ G++ G +IH AT GL+S L+
Sbjct: 124 GVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVS 183
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY KCG + ++ V + +DV WN++++G A + AL++ EM + D T
Sbjct: 184 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGT 243
Query: 308 FIGLLSACSHAGL--VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL-- 363
LL A S+ V ++F +M K + L + M+ + + + A+EL
Sbjct: 244 MASLLPAVSNTTTENVMYVKDMFFKMGK-----KSLVSWNVMIGVYMKNAMPVEAVELYS 298
Query: 364 -IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYA 419
+EA FEP + ++L AC L +G ++ + K N L + L+ ++YA
Sbjct: 299 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI---DMYA 355
Query: 420 SCGQWEEA 427
CG E+A
Sbjct: 356 KCGCLEKA 363
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D S +L A G S+ +G +HG + ++ ++ AL+ MY C
Sbjct: 300 MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC 359
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
++ A VFE M +D+++W +M+ A+ G+ A+ KL D + D +F ++
Sbjct: 360 LEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAA 419
Query: 117 YARIGKIHSARYIF 130
+ G + R F
Sbjct: 420 CSHAGLLEEGRSCF 433
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 170/511 (33%), Positives = 258/511 (50%), Gaps = 52/511 (10%)
Query: 5 GVHADN-----YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
+HAD+ YSF L A G +HG ++ V++ TAL+ MY
Sbjct: 141 AMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCE 200
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTS 109
DA +VF+ MPE+++++WNS++ + G + A+ L D + L V S
Sbjct: 201 RPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMS 260
Query: 110 F------------------------------NIMISGYARIGKIHSARYIFDKVPAKDVV 139
N ++ YA+ G+ AR IFD +P++ VV
Sbjct: 261 ACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVV 320
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
S S++ Y + +E A +F +M+ KNVI WN ++ Y ++ E + LF ++K +
Sbjct: 321 SETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDS 380
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYAT------DNGLASNPHATTALIDMYAKCG 253
+ P + T +VL+AC N+ L+ G + HV+ D G S+ +L+DMY K G
Sbjct: 381 IWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 440
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
SI+ +VF + +D WNAMI+G A +G AL L M S D +T IG+LS
Sbjct: 441 SIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLS 500
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
AC H+GLV EG F M +D G+T +HY CMVDLLGRA L A ELI+ MP EP
Sbjct: 501 ACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDS 560
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
+ +LL AC +H+++E+G+R A + + + + G ++ +N+YA G+W + R R
Sbjct: 561 VLWASLLGACRLHKNVELGERTAGRLF-ELDPENSGPYVLLSNMYAEMGKWADVFRVRRS 619
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M D G+ K G S IE+ + FLA H
Sbjct: 620 MKDRGVSKQPGCSWIEIGSKMNVFLARDNRH 650
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/446 (24%), Positives = 192/446 (43%), Gaps = 84/446 (18%)
Query: 2 QELGVHADNYSFPL--LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
QEL H S PL LL++A L + HG +K+ G ++ L+ Y L
Sbjct: 11 QELVAHL-RASSPLADLLRSAPSLPGARAA---HGCVLKSPVAGETFLLNTLVSTYARLG 66
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ +A +VF+ +P ++ ++N++L A+A G+ D A L + +P D S+N +++ AR
Sbjct: 67 RLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALAR 126
Query: 120 IGK------------IHSARYIFD----------------------------KVP-AKDV 138
G+ +H+ ++ + + P A DV
Sbjct: 127 HGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDV 186
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+L+ Y A +F M +NV++WN+++T Y ++ E + LF EM A
Sbjct: 187 HIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMAT 246
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVY-ATDNGLASNPHATTALIDMYAKCG---- 253
PD +T++SV+SACA L + G ++H + + L + AL+DMYAKCG
Sbjct: 247 GFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWE 306
Query: 254 ---------------------------SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
++E + VF + K+V WN +I A +G
Sbjct: 307 ARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEE 366
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK-----DFGVTRKL 341
A++L ++ + T+ +L+AC + ++Q G + + K DFG +
Sbjct: 367 EEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDV 426
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAM 367
+VD+ + +D ++ E M
Sbjct: 427 FVGNSLVDMYLKTGSIDDGAKVFERM 452
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 148/326 (45%), Gaps = 15/326 (4%)
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
N ++S YAR+G++ AR +FD +P ++ S+N+L+ AY G ++A +F+ + +
Sbjct: 55 LNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQ 114
Query: 170 ITWNTMVTGYLRSQL--YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
++N +V R + + M A + + + S LSACA L TG ++H
Sbjct: 115 CSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVH 174
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ A + H TAL+DMYAKC + VF ++V WN++I +G
Sbjct: 175 GLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVG 234
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL L EM + D++T ++SAC+ +EG ++ + M K + + +
Sbjct: 235 EALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNAL 294
Query: 348 VDLLGRARLLDRAIELIEAMP----FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
VD+ + A + ++MP T + G SA V + V K V A +
Sbjct: 295 VDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWN 354
Query: 404 NYLSDGELMMFANLYASCGQWEEANR 429
++ YA G+ EEA R
Sbjct: 355 VLIA---------AYAQNGEEEEAIR 371
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 167/467 (35%), Positives = 252/467 (53%), Gaps = 33/467 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LGV + Y++P +LKA C GL+ I+ G H + KM+G
Sbjct: 100 MLHLGVRPNKYTYPFVLKA-------CSGLL----AIEDGVEIHSHA-----KMFGL--- 140
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
E D+ +++D +A CG + A +L M +DV ++N MI+G +
Sbjct: 141 ------------ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE-MEKAGEMFKKMLVKNVITWNTMVTGY 179
G A + ++ + + +S I+ + + A ++F M V+N ++W+ M+ GY
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGY 248
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ S E +D+F M+ + PD T+ VL AC++L +L+ G H Y G A++
Sbjct: 249 VASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT 308
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMY+KCG I + EVF + D+ WNAMI+G +HG G AL L ++
Sbjct: 309 LICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL 368
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+K DDITFI LLS+CSH+GLV EG F M +DF + ++EH CMVD+LGRA L+D
Sbjct: 369 GLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDE 428
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A I MPFEP I ALLSAC IH+++E+G+ V+K + + S G ++ +N+Y+
Sbjct: 429 AHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPE-STGNFVLLSNIYS 487
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
+ G+W++A R D G+ K G S IE+NG H F+ G HL
Sbjct: 488 AAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQ 534
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 158/364 (43%), Gaps = 45/364 (12%)
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
KIH ++ D + L Y + ++ A +F ++ +VI WN ++ Y
Sbjct: 29 KIH--QHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ + +DL+ M V+P+ T VL AC+ L ++E G IH +A GL S+
Sbjct: 87 NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
TAL+D YAKCG + ++ +F +DV WNAMI G +L+G A++L+ +M + +
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
+ T +G+L C C L++R D R + M+ + + A+
Sbjct: 207 CPNSSTIVGVLPTCQ--------CLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEAL 258
Query: 362 ELIEAMPF---EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM--FA- 415
++ M +P + + +L AC + + + + S G L++ FA
Sbjct: 259 DIFRMMQLSGIDPDLTTMLGVLPAC------------SHLAALQHGFCSHGYLIVRGFAT 306
Query: 416 ---------NLYASCGQWEEANRWRNMMNDTGIVKTAGSSV--------IEVNGSYHKFL 458
++Y+ CG+ A N M+ IV + +E G +H L
Sbjct: 307 DTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLL 366
Query: 459 AGGI 462
A G+
Sbjct: 367 ALGL 370
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
VK +YL +L AC SL +IH + N ++ L +Y C + +
Sbjct: 7 VKNNYL---HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLAR 63
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F + V WN +I A +G A+ L M V+ + T+ +L ACS
Sbjct: 64 RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLL 123
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+++G E+ S K FG+ + +VD + +L A L +M
Sbjct: 124 AIEDGVEIHSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 177/546 (32%), Positives = 273/546 (50%), Gaps = 96/546 (17%)
Query: 6 VHADNYSFPLLLKAAG----ILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
+ D+YSF L+ A G + + C LH +K+G + V AL+ +Y ++C
Sbjct: 159 LRPDDYSFTALISAVGQMHNLAAPHCT--QLHCSVLKSGAAAVLSVSNALIALY--MKCD 214
Query: 62 D-----DAFKVFEKMPEKDI-------------------------------IAWNSMLDA 85
DA KV ++MP+KD + WN+M+
Sbjct: 215 TPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISG 274
Query: 86 FASCGQMDHAMKLIDLM-----PLKDVT-----------------------------SF- 110
+ G A +L M PL + T +F
Sbjct: 275 YVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFV 334
Query: 111 --------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK 162
N +++ Y++ GKI A+ IFD + KDVVSWN+++ Y ++G ++KA E+FK
Sbjct: 335 PEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFK 394
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
M KN ++W MV+GY+ L + + LF++M+A +VKP T ++AC LG+L+
Sbjct: 395 VMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKH 454
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G ++H + G ++ A AL+ MYAKCG++ + VF D WNAMI L
Sbjct: 455 GRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQ 514
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
HG+G AL+L +M + D I+F+ +L+AC+HAGLV EG F M++DFG++ +
Sbjct: 515 HGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGED 574
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKM 398
HY ++DLLGR+ + A +LI+ MPFEPT SI A+LS C + D+E G D++ +M
Sbjct: 575 HYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRM 634
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ DG ++ +N Y++ G+W +A R R +M D G+ K G S IEV H FL
Sbjct: 635 IPQH-----DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFL 689
Query: 459 AGGIGH 464
G H
Sbjct: 690 VGDTKH 695
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/470 (34%), Positives = 248/470 (52%), Gaps = 46/470 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+Y++P +LKA+ +G+ +H ++ G +V+V L+ MYG
Sbjct: 132 GIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGK------- 184
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
CG + A +++D MP +DV S+N +++G AR G+
Sbjct: 185 ------------------------CGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFD 220
Query: 125 SARYIFDKVP----AKDVVSWNSLILAYTNA--GEMEKAGEMFKKMLVKNVITWNTMVTG 178
A + ++ D + SL+ A TN + EMF K+ K++++WN M+
Sbjct: 221 DALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAV 280
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y+ + + E VD+F +M+ V PD +++ SVL AC +L +L G RIH Y L N
Sbjct: 281 YMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPN 340
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
ALIDMYAKCG +E + EVF + + +DV W +MI ++G G A+ L M D
Sbjct: 341 LLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQD 400
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ D I F+ +LSACSHAGL+ EG F M ++ + ++EH+ CMVDLLGRA +D
Sbjct: 401 LGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVD 460
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMF 414
A I+ MP EP E + GALLSAC ++ ++ IG D++ ++ +S Y ++
Sbjct: 461 EAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGY-----YVLL 515
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G+WE+ R++M GI K G S E++ H FLAG H
Sbjct: 516 SNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSH 565
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 22/315 (6%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ AY GE +F ++ KNV+ +N M+ Y+ + LY + + +F M + PD
Sbjct: 77 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ T VL A + L G +IH GL N LI MY KCG + ++ V
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL--V 321
+ +DV WN+++ G A +G AL++ EM +K D T LL A ++ L V
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 256
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL---IEAMPFEPTESILGA 378
E+F ++ + L + M+ + + A+++ +E +P + +
Sbjct: 257 SFVKEMFMKL-----ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 311
Query: 379 LLSACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYASCGQWEEAN------R 429
+L AC L +G R+ + V K N L + L+ ++YA CG E A +
Sbjct: 312 VLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALI---DMYAKCGCLEYAREVFDQMK 368
Query: 430 WRNMMNDTGIVKTAG 444
+R++++ T ++ G
Sbjct: 369 FRDVVSWTSMISAYG 383
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 122/332 (36%), Gaps = 81/332 (24%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----- 136
++ A+A CG+ + D +P K+V FN+MI Y A +F +
Sbjct: 77 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136
Query: 137 ----------------------------------DVVSWNSLILAYTNAGEMEKAGEMFK 162
+V N LI Y G + +A +
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+M ++V++WN++V G R+ + + +++ EM+ +KPD T+ S+L
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLL----------- 245
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
P T +D ++ E+F K K + WN MI
Sbjct: 246 ----------------PAVTNTCLD------NVSFVKEMFMKLANKSLVSWNVMIAVYMN 283
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
+ A+ + +M D V D I+ +L AC + L R ++ V ++L+
Sbjct: 284 NSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSAL-----LLGRRIHEYVVRKRLQ 338
Query: 343 H----YGCMVDLLGRARLLDRAIELIEAMPFE 370
++D+ + L+ A E+ + M F
Sbjct: 339 PNLLLENALIDMYAKCGCLEYAREVFDQMKFR 370
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ V D S +L A G LS+ +G +H ++ ++ ++ AL+ MY C
Sbjct: 297 MEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGC 356
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----DLMPLKDVTSFNIMISG 116
++ A +VF++M +D+++W SM+ A+ G+ A+ L DL D +F ++S
Sbjct: 357 LEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSA 416
Query: 117 YARIGKIHSARYIF 130
+ G + RY F
Sbjct: 417 CSHAGLLDEGRYYF 430
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/468 (34%), Positives = 263/468 (56%), Gaps = 11/468 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD- 63
G D Y+FP +LK+ S H ++KTG +YVQ L+ +Y C D+
Sbjct: 104 GFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSI--CGDNV 161
Query: 64 -AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIG 121
A KVFE M +D+++W ++ + G + A+ L M ++ +V +F ++ ++G
Sbjct: 162 GAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMNVEPNVGTFVSILGACGKLG 221
Query: 122 KIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+++ + +F + +++V N+++ Y + A +MF +M K++I+W +M+
Sbjct: 222 RLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIG 281
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G ++ Q E +DLF +M+A +PD + +TSVLSACA+LG L+ G +H Y + +
Sbjct: 282 GLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKW 341
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ H T L+DMYAKCG I+ + +F K++ WNA I GLA++GYG ALK ++
Sbjct: 342 DVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLV 401
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEHYGCMVDLLGRARL 356
+S + +++TF+ + +AC H GLV EG + F+ M + ++ LEHYGCMVDLL RA L
Sbjct: 402 ESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGL 461
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
+ A+ELI+ MP P ILGALLS+ + ++ + K + + G ++ +N
Sbjct: 462 VGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEMLKSL-PNVEFQDSGIYVLLSN 520
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
LYA+ +W E R +M GI K GSS+I V+G H+FL G H
Sbjct: 521 LYATNKKWAEVRSVRRLMKQKGISKAPGSSIIRVDGMSHEFLVGDNSH 568
>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 162/477 (33%), Positives = 261/477 (54%), Gaps = 18/477 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G + + +L A L + +G +HG + GF + +V L+ +Y RC
Sbjct: 37 MQAAGFEPNARTLASVLPACARLQNLNLGKEIHGYVTRHGFMSNPFVVNGLVDVY--RRC 94
Query: 61 ID--DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFNIMISG 116
D A K+F K+++++N+M+ + G ++ A +L D M L KD S+N MISG
Sbjct: 95 ADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISG 154
Query: 117 YA----RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM----LVKN 168
YA + + +A+ FD V +D +WN LI Y ++E + +KM N
Sbjct: 155 YADNLLKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPN 214
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TWN +++G++ + + LF EM+ +++PD TV +L ACA L ++ G ++H
Sbjct: 215 VYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHA 274
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
++ G + H AL+DMYAKCGSI+ +++V+ + ++ NAM+ A+HG+G
Sbjct: 275 HSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDE 334
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
+ L M + + D +TF+ +LS+C HAG V+ G E F M + VT L+HY C+V
Sbjct: 335 GIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTY-YNVTPSLKHYTCIV 393
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLS 407
DLL RA LD A EL++ +P +P + GALL CVI ++E+G+ A+ ++ + N +
Sbjct: 394 DLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPN--N 451
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ ANLYA G+W + +R R M+ D G+ K+ G S IE H FL+ H
Sbjct: 452 TGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSH 508
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 10/233 (4%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N+++W+ ++ G+ ++ E ++L M+A +P+ T+ SVL ACA L +L G IH
Sbjct: 10 NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
Y T +G SNP L+D+Y +C + +L++F VK+V +N MI+G +G
Sbjct: 70 GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF-GVT-RKLEHYG 345
A +L +M V D I++ ++S + L CE + F GVT R +
Sbjct: 130 KAKELFDQM--ELVGKDTISWNSMISGYADNLL---KCEDLKAAQLAFDGVTERDTATWN 184
Query: 346 CMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRV 395
++ L+ LI+ M FEP ++S V + E+ R+
Sbjct: 185 VLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRL 237
>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
Length = 612
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 246/403 (61%), Gaps = 4/403 (0%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
LL+ L + A ++F++MPE+D++++NSM+ + + G + A L D M +DV
Sbjct: 161 NTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGMARRDVV 220
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++N MISGY+R G + +AR +FD +P +DVVSWNS++ Y AG++E A +F M ++
Sbjct: 221 TWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRS 280
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIH 227
+++WN ++ Y + + + E + LFD M A GN P+ T SVL+ACANLG LE G +H
Sbjct: 281 IVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVH 340
Query: 228 --VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
V + L + T L+ MYAKCG +E + E+F K V WN+MI+G LHG
Sbjct: 341 DLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQ 400
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
AL+L EM + ++ TFI +LS+C+H GLV EG F RM + + + K EH+G
Sbjct: 401 SEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHFG 460
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
CM+DLLGRA LL+++ LIE + + +E++ G L+SA ++++G+ V K + +
Sbjct: 461 CMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEFVGKKLI-EMRP 519
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
G ++ +N+YA+ G+W++ + R +M + G+ K AG S++
Sbjct: 520 TEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/470 (34%), Positives = 248/470 (52%), Gaps = 46/470 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+Y++P +LKA+ +G+ +H ++ G +V+V L+ MYG
Sbjct: 1121 GIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGK------- 1173
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
CG + A +++D MP +DV S+N +++G AR G+
Sbjct: 1174 ------------------------CGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFD 1209
Query: 125 SARYIFDKVP----AKDVVSWNSLILAYTNA--GEMEKAGEMFKKMLVKNVITWNTMVTG 178
A + ++ D + SL+ A TN + EMF K+ K++++WN M+
Sbjct: 1210 DALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAV 1269
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y+ + + E VD+F +M+ V PD +++ SVL AC +L +L G RIH Y L N
Sbjct: 1270 YMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPN 1329
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
ALIDMYAKCG +E + EVF + + +DV W +MI ++G G A+ L M D
Sbjct: 1330 LLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQD 1389
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ D I F+ +LSACSHAGL+ EG F M ++ + ++EH+ CMVDLLGRA +D
Sbjct: 1390 LGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVD 1449
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMF 414
A I+ MP EP E + GALLSAC ++ ++ IG D++ ++ +S Y ++
Sbjct: 1450 EAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGY-----YVLL 1504
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G+WE+ R++M GI K G S E++ H FLAG H
Sbjct: 1505 SNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSH 1554
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 22/315 (6%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ AY GE +F ++ KNV+ +N M+ Y+ + LY + + +F M + PD
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ T VL A + L G +IH GL N LI MY KCG + ++ V
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL--V 321
+ +DV WN+++ G A +G AL++ EM +K D T LL A ++ L V
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL---IEAMPFEPTESILGA 378
E+F ++ + L + M+ + + A+++ +E +P + +
Sbjct: 1246 SFVKEMFMKL-----ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 1300
Query: 379 LLSACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYASCGQWEEAN------R 429
+L AC L +G R+ + V K N L + L+ ++YA CG E A +
Sbjct: 1301 VLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALI---DMYAKCGCLEYAREVFDQMK 1357
Query: 430 WRNMMNDTGIVKTAG 444
+R++++ T ++ G
Sbjct: 1358 FRDVVSWTSMISAYG 1372
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 121/331 (36%), Gaps = 81/331 (24%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----- 136
++ A+A CG+ + D +P K+V FN+MI Y A +F +
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125
Query: 137 ----------------------------------DVVSWNSLILAYTNAGEMEKAGEMFK 162
+V N LI Y G + +A +
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+M ++V++WN++V G R+ + + +++ EM+ +KPD T+ S+L A N
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNT----- 1240
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
DN + E+F K K + WN MI
Sbjct: 1241 -------CLDN---------------------VSFVKEMFMKLANKSLVSWNVMIAVYMN 1272
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
+ A+ + +M D V D I+ +L AC + L R ++ V ++L+
Sbjct: 1273 NSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSAL-----LLGRRIHEYVVRKRLQ 1327
Query: 343 H----YGCMVDLLGRARLLDRAIELIEAMPF 369
++D+ + L+ A E+ + M F
Sbjct: 1328 PNLLLENALIDMYAKCGCLEYAREVFDQMKF 1358
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ V D S +L A G LS+ +G +H ++ ++ ++ AL+ MY C
Sbjct: 1286 MEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGC 1345
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----DLMPLKDVTSFNIMISG 116
++ A +VF++M +D+++W SM+ A+ G+ A+ L DL D +F ++S
Sbjct: 1346 LEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSA 1405
Query: 117 YARIGKIHSARYIF 130
+ G + RY F
Sbjct: 1406 CSHAGLLDEGRYYF 1419
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/444 (32%), Positives = 252/444 (56%), Gaps = 4/444 (0%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D Y+FPL++K +G +HG ++ GF V V T+ + YG + + A K
Sbjct: 107 RPDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARK 166
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF +MPE++ ++W +++ A+ G+++ A + DLMP +++ S+N ++ G + G + +A
Sbjct: 167 VFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNA 226
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
+ +FD++P +D++S+ S+I Y G+M A ++F++ +V W+ ++ GY ++
Sbjct: 227 KKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPN 286
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD--NGLASNPHATTA 244
E +F EM A NVKPD + ++SAC+ +G E ++ Y N +S+ + A
Sbjct: 287 EAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSH-YVVPA 345
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LIDM AKCG ++++ ++F + +D+ + +M+ G+A+HG G A++L +M D + D
Sbjct: 346 LIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPD 405
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
++ F +L C + LV+EG F M K + + +HY C+V+LL R L A ELI
Sbjct: 406 EVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELI 465
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
++MPFE S G+LL C +H + EI + VA+ + S G ++ +N+YA+ +W
Sbjct: 466 KSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQ-SAGSYVLLSNIYAALDRW 524
Query: 425 EEANRWRNMMNDTGIVKTAGSSVI 448
+ R+ MN+ GI K G S I
Sbjct: 525 TDVAHLRDKMNENGITKICGRSWI 548
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 148/349 (42%), Gaps = 93/349 (26%)
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-------------PL--------- 104
VFE++P WN ++ +++ + ++ M PL
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KDV + Y + + SAR +F ++P ++ VSW +L++
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
AY +GE+E+A MF M +N+ +WN +V G ++S + LFDEM K D ++
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMP----KRDIIS 240
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
TS +ID YAK G + + ++F +++
Sbjct: 241 YTS-----------------------------------MIDGYAKGGDMVSARDLFEEAR 265
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
DV W+A+ILG A +G A K+ EM VK D+ +GL+SACS G E CE
Sbjct: 266 GVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCF-ELCE 324
Query: 327 -----LFSRMEKDFGVTRKLEHY--GCMVDLLGRARLLDRAIELIEAMP 368
L RM K F HY ++D+ + +DRA +L E MP
Sbjct: 325 KVDSYLHQRMNK-FS-----SHYVVPALIDMNAKCGHMDRAAKLFEEMP 367
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 124/319 (38%), Gaps = 49/319 (15%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVD-LFDEMKAGNVKPDYLTVTSVLSACANLG 218
+F+++ WN ++ GY L+ E V L M+ G +PD T V+ C+N G
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKC-------------------------- 252
+ G+ +H G + T+ +D Y KC
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184
Query: 253 -----GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
G +E++ +F +++ WNA++ GL G A KL EM K D I+
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMP----KRDIIS 240
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR--LLDRAIELIE 365
+ ++ + G + +LF R ++ +LG A+ + A ++
Sbjct: 241 YTSMIDGYAKGGDMVSARDLFEE-------ARGVDVRAWSALILGYAQNGQPNEAFKVFS 293
Query: 366 AM---PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASC 421
M +P E I+ L+SAC E+ ++V + + N S ++ ++ A C
Sbjct: 294 EMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKC 353
Query: 422 GQWEEANRWRNMMNDTGIV 440
G + A + M +V
Sbjct: 354 GHMDRAAKLFEEMPQRDLV 372
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/474 (32%), Positives = 260/474 (54%), Gaps = 41/474 (8%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +H Q I+ G ++ LL+ ID A ++F+ ++ + +++D F S
Sbjct: 66 LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSS 125
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISG--------------------------------- 116
G A++L M + + N +++
Sbjct: 126 GNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVR 185
Query: 117 ------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
Y + G++ AR +F+++P +DVV+ +I +Y++ G +E+AG +F ++ K+ +
Sbjct: 186 LRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTV 244
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
W M+ G++R++ ++ F M+ NV+P+ T+ VLSAC+ LG+LE G +H Y
Sbjct: 245 CWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM 304
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ N ALI+MY++CGSI+++ VF + + +DV +N MI GL+++G A+
Sbjct: 305 RKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAI 364
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L M ++ ++TF+G+L+ACSH GLV G E+F M +D+ V ++EHYGCMVDL
Sbjct: 365 ELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDL 424
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGR L+ A +LI M P +LG LLSAC +H++LE+G++VAK + + S G
Sbjct: 425 LGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADS-GT 483
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +++YAS G+W+EA + R M + G+ K G S IEVN H+FL G + H
Sbjct: 484 YVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRH 537
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V + ++ +L A L + IG +H K +++V AL+ MY
Sbjct: 269 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGS 328
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID+A VF++M ++D+I +N+M+ + G+ A++L +M + + N+ G
Sbjct: 329 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVG---- 384
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
++ A ++ G ++ E+F M + + + M
Sbjct: 385 -----------------------VLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCM 421
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R E DL MK + PD++ + ++LSAC +LE G ++ D G
Sbjct: 422 VDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQ 478
Query: 236 ASNPHATTALID-MYAKCGSIEQSLEVFYK 264
A + T L+ +YA G +++ +V K
Sbjct: 479 ADS--GTYVLLSHVYASSGKWKEAAQVRAK 506
>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
Length = 540
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 167/503 (33%), Positives = 249/503 (49%), Gaps = 75/503 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY----- 55
M+ GV ++F LL+A +L HGQ ++ GF V+VQ AL+ +Y
Sbjct: 1 MRAQGVPPYGFTFTFLLRACALLGLPRPCGCFHGQIVRCGFGSDVFVQNALMDVYHRCGG 60
Query: 56 ---------GSLRCIDD------------------------AFKVFEKMPEKDIIAWNSM 82
+ + D+ A FE MPE+++++WN++
Sbjct: 61 GGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTV 120
Query: 83 LDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
+ FA G M A + D MP ++ S+N+MISGYA G + +AR +FD++ KDVVSW
Sbjct: 121 VAGFARMGDMVTAWAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWT 180
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVK 201
+++ AY G+++ A E+F M VKN+++WN M+TGY + Y E + F M G +
Sbjct: 181 AMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFR 240
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ SV+SACA LGS+E I + + + ALIDM+AKCG + ++ +
Sbjct: 241 PDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSI 300
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
FYK + + + W MI G A +G AL + M V+ DD FI L+AC+H GL+
Sbjct: 301 FYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLL 360
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
QEG +F+ M + + + ++EHYGCMVDLLGRA L++ + I + EP S L+S
Sbjct: 361 QEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL--EPFNSSYQVLVS 418
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
C LE G+W+ R M + GI K
Sbjct: 419 NC---SALE-------------------------------GRWDGVIDARTSMRNWGIEK 444
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
GSS I+V H+FLA H
Sbjct: 445 VPGSSSIQVGSEVHEFLAKDTRH 467
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 259/499 (51%), Gaps = 45/499 (9%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKV 67
D + +KAA SS + H K GF G V AL+ MY S + DA K+
Sbjct: 131 DARTIVFAVKAAATSSSPTEAI--HCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKL 188
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD--------------------- 106
F++M ++D+++W +++D +A G D A ++ M + +
Sbjct: 189 FDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGL 248
Query: 107 -------------------VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
V N ++ + + G + +A+ +FD +P KDV SW S++ A
Sbjct: 249 LGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSA 308
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G++E A ++FK++ +NV++W+ MV Y + + E + +F++M A V+P T+
Sbjct: 309 YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368
Query: 208 TSVLSACANLGSLETGARIH-VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
SVLSACA L SL+ G ++ Y + + P+ + A IDM+AKCG + + +F +
Sbjct: 369 VSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNME 428
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K+V WN MI+ LHG AL L E + + D+ T+IG+LSACSH GLV EG
Sbjct: 429 DKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRC 488
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F M+ +G+ + EHY CM+DLLG+ LL A E+ +MP E+ GALL+AC +H
Sbjct: 489 HFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMH 548
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
++EIG A + A + G ++ + +YAS +W + R +M D + K G S
Sbjct: 549 GNVEIGKCAADKL-AGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCS 607
Query: 447 VIEVNGSYHKFLAGGIGHL 465
IEV+G H+FL + H+
Sbjct: 608 SIEVDGKCHEFLVADVSHV 626
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 8/229 (3%)
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
TM+ G+LR+ + LF + + D T+ + A A S IH A
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEA--IHCVAFKR 159
Query: 234 G-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + + A AL+ MY + + ++F + +DV W +I G A G A ++
Sbjct: 160 GFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRV 219
Query: 293 LGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG-VTRKLEHYGCMVDL 350
M V +++T + SA GL+ G + + + G ++ LE+ +VD+
Sbjct: 220 FCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLEN--ALVDM 277
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
G+ + A E+ + MP + S +++SA DLE ++ K +
Sbjct: 278 FGKCGCVAAAKEVFDGMPIKDVYS-WTSMVSAYAKCGDLENAAKLFKEI 325
>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 612
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 246/403 (61%), Gaps = 4/403 (0%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
LL+ L + A ++F++MPE+D++++NSM+ + + G + A L D M +DV
Sbjct: 161 NTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGMARRDVV 220
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++N MISGY+R G + +AR +FD +P +DVVSWNS++ Y AG++E A +F M ++
Sbjct: 221 TWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRS 280
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIH 227
+++WN ++ Y + + + E + LFD M A GN P+ T SVL+ACANLG LE G +H
Sbjct: 281 IVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVH 340
Query: 228 --VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
V + L + T L+ MYAKCG +E + E+F K V WN+MI+G LHG
Sbjct: 341 DLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQ 400
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
AL+L EM + ++ TFI +LS+C+H GLV EG F RM + + + K EH+G
Sbjct: 401 SEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHFG 460
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
CM+DLLGRA LL+++ LIE + + +E++ G L+SA ++++G+ V K + +
Sbjct: 461 CMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEFVGKKLI-EMRP 519
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
G ++ +N+YA+ G+W++ + R +M + G+ K AG S++
Sbjct: 520 TEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562
>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
Length = 752
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/499 (33%), Positives = 249/499 (49%), Gaps = 75/499 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY--------- 55
GV + ++F LL+A +L +HGQ ++ GF V+VQ AL+ +Y
Sbjct: 106 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGG 165
Query: 56 -----GSLRCIDD------------------------AFKVFEKMPEKDIIAWNSMLDAF 86
+ + D+ A FE MPE+++++WN+++ F
Sbjct: 166 GGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGF 225
Query: 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
A G M A + D MP ++ S+N+MISGYA G + +AR +FD++ KDVVSW +++
Sbjct: 226 ARMGDMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVS 285
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYL 205
AY G+++ A E+F M VKN+++WN M+TGY + Y E + F M G +PD
Sbjct: 286 AYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 345
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ SV+SACA LGS+E I + + + ALIDM+AKCG + ++ +FYK
Sbjct: 346 TLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKM 405
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ + + W MI G A +G AL + M V+ DD FI L+AC+H GL+QEG
Sbjct: 406 ETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGW 465
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
+F+ M + + + ++EHYGCMVDLLGRA L++ + I + EP S L+S C
Sbjct: 466 SIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL--EPFNSSYQVLVSNC-- 521
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
LE G+W+ R M + GI K GS
Sbjct: 522 -SALE-------------------------------GRWDGVIDARTSMRNWGIEKVPGS 549
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S I+V H+FLA H
Sbjct: 550 SSIQVGSEVHEFLAKDTRH 568
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 259/499 (51%), Gaps = 45/499 (9%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKV 67
D + +KAA SS + H K GF G V AL+ MY S + DA K+
Sbjct: 131 DARTIVFAVKAAATSSSPTEAI--HCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKL 188
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD--------------------- 106
F++M ++D+++W +++D +A G D A ++ M + +
Sbjct: 189 FDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGL 248
Query: 107 -------------------VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
V N ++ + + G + +A+ +FD +P KDV SW S++ A
Sbjct: 249 LGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSA 308
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G++E A ++FK++ +NV++W+ MV Y + + E + +F++M A V+P T+
Sbjct: 309 YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368
Query: 208 TSVLSACANLGSLETGARIH-VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
SVLSACA L SL+ G ++ Y + + P+ + A IDM+AKCG + + +F +
Sbjct: 369 VSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNME 428
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K+V WN MI+ LHG AL L E + + D+ T+IG+LSACSH GLV EG
Sbjct: 429 DKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRC 488
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F M+ +G+ + EHY CM+DLLG+ LL A E+ +MP E+ GALL+AC +H
Sbjct: 489 HFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMH 548
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
++EIG A + A + G ++ + +YAS +W + R +M D + K G S
Sbjct: 549 GNVEIGKCAADKL-AGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCS 607
Query: 447 VIEVNGSYHKFLAGGIGHL 465
IEV+G H+FL + H+
Sbjct: 608 SIEVDGKCHEFLVADVSHV 626
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 8/229 (3%)
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
TM+ G+LR+ + LF + + D T+ + A A S IH A
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEA--IHCVAFKR 159
Query: 234 G-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + + A AL+ MY + + ++F + +DV W +I G A G A ++
Sbjct: 160 GFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRV 219
Query: 293 LGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG-VTRKLEHYGCMVDL 350
M V +++T + SA GL+ G + + + G ++ LE+ +VD+
Sbjct: 220 FCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLEN--ALVDM 277
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
G+ + A E+ + MP + S +++SA DLE ++ K +
Sbjct: 278 FGKCGCVAAAKEVFDGMPIKDVYS-WTSMVSAYAKCGDLENAAKLFKEI 325
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/433 (34%), Positives = 245/433 (56%), Gaps = 32/433 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+++A K+F++MP+KD++A +ML + G++ A L D MP ++V S+ MISGYA+
Sbjct: 159 VNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQN 218
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGE--------------------- 159
GK+ AR +F+ +P ++ VSW ++++ Y AG +E A +
Sbjct: 219 GKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFG 278
Query: 160 ----------MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
MF++M ++ TW+ M+ Y +++ +E + F EM ++P+Y + S
Sbjct: 279 QHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFIS 338
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+L+ CA L + + G +H ++ A +ALI MY KCG+++++ VF + KD
Sbjct: 339 ILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKD 398
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V WN+MI G A HG G AL + ++ + + D IT+IG+L+ACS+ G V+EG E+F+
Sbjct: 399 VVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFN 458
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M + + HY CMVDLLGRA L+D A++LI MP EP I GAL+ AC +H++
Sbjct: 459 SMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNA 518
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
EI + AK + + S G ++ +++Y S G+WE+A+ R ++ + K+ G S IE
Sbjct: 519 EIAEVAAKKLL-ELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIE 577
Query: 450 VNGSYHKFLAGGI 462
N H F +G +
Sbjct: 578 YNKMVHLFTSGDV 590
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 139/283 (49%), Gaps = 39/283 (13%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
T+LL+ Y + DA ++F +MPE++ + + +L F G+++ A KL D MP KDV
Sbjct: 116 TSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVV 175
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ M+SGY + G+I AR +FD++P ++VVSW ++I Y G++ A ++F+ M +N
Sbjct: 176 ARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRN 235
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++W M+ GY+++ + DLF+ M PD+ ++AC
Sbjct: 236 EVSWTAMLVGYIQAGHVEDAEDLFNAM------PDH-----PVAAC-------------- 270
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
A++ + + G ++ + +F + +D W+AMI + +
Sbjct: 271 --------------NAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLME 316
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
AL EM ++ + +FI +L+ C+ G EL + M
Sbjct: 317 ALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAM 359
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 127/258 (49%), Gaps = 14/258 (5%)
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA 135
++A N+ + G ++ A D MPL+ S+N +I+GY R +A +F ++P+
Sbjct: 17 VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76
Query: 136 KDVVSWNSLI--LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD 193
+D+ S+N+LI L+ + A + L +V+++ +++ GY+R L + + LF
Sbjct: 77 RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
+M N ++T T +L + G + ++ D + A TA++ Y + G
Sbjct: 137 QMPERN----HVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVV----ARTAMLSGYCQAG 188
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
I ++ +F + ++V W AMI G A +G A KL M D +++++ +L
Sbjct: 189 RITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR----NEVSWTAMLV 244
Query: 314 ACSHAGLVQEGCELFSRM 331
AG V++ +LF+ M
Sbjct: 245 GYIQAGHVEDAEDLFNAM 262
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 166/389 (42%), Gaps = 30/389 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-R 119
I+ A F+ MP + ++N+++ + D A+ L MP +D+ S+N +I+G + R
Sbjct: 33 IEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLR 92
Query: 120 IGKIHSARYIFDKVP-AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ A +P VVS+ SL+ Y G + A +F +M +N +T+ ++ G
Sbjct: 93 RHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGG 152
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+L + E LFDEM D + T++LS G + T AR D N
Sbjct: 153 FLDAGRVNEARKLFDEMP----DKDVVARTAMLSGYCQAGRI-TEARALF---DEMPKRN 204
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+ TA+I YA+ G + + ++F ++ W AM++G G+ A L M D
Sbjct: 205 VVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPD 264
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARLL 357
V A + +G G+V +F RM +D G + M+ + + L
Sbjct: 265 HPVAACNAMMVGF----GQHGMVDAAKAMFERMCARDDGT------WSAMIKVYEQNEFL 314
Query: 358 DRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRV--AKMVCA-KSNYLSDGEL 411
A+ M P + ++L+ C + G + A + C+ ++ + L
Sbjct: 315 MEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSAL 374
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIV 440
+ +Y CG ++A R NM +V
Sbjct: 375 I---TMYIKCGNLDKAKRVFNMFEPKDVV 400
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 35/215 (16%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + SF +L L+++ G LH ++ F V+ +AL+ MY +D A
Sbjct: 328 GIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKA 387
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+VF KD++ WNSM+ +A G + A+ + D + L AR+
Sbjct: 388 KRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRL-------------ARM---- 430
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT-----WNTMVTGY 179
A D +++ ++ A + G++++ E+F M + + I ++ MV
Sbjct: 431 ----------APDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLL 480
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
R+ L E +DL + M V+PD + +++ AC
Sbjct: 481 GRAGLVDEALDLINNMP---VEPDAIIWGALMGAC 512
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 164/487 (33%), Positives = 253/487 (51%), Gaps = 50/487 (10%)
Query: 27 CIGL----MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF--KVFEKMPEKDIIAWN 80
CI L +HG ++ G Y+ T L++ L D + +V E + ++ W
Sbjct: 59 CINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWT 118
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVT--SF---------------------------- 110
+++ +A G+ D A+ + M +++T SF
Sbjct: 119 AVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRL 178
Query: 111 ---------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
N MI Y + I AR +FD++P +DV+SW LI AY G ME A E+F
Sbjct: 179 RGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELF 238
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
+ + K+++ W MVTG+ ++ E ++ FD M+ ++ D +TV +SACA LG+ +
Sbjct: 239 ESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASK 298
Query: 222 TGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
R A +G + + H +ALIDMY+KCG++E+++ VF K+VF +++MILG
Sbjct: 299 YADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILG 358
Query: 280 LALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
LA HG AL L M + +K + +TF+G L ACSH+GLV +G ++F M + FGV
Sbjct: 359 LATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQ 418
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
+HY CMVDLLGR L A+ELI+ M EP + GALL AC IH + EI + A+
Sbjct: 419 PTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEH 478
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS-VIEVNGSYHKF 457
+ + G ++ +N+YAS G W R R ++ + G+ KT S V++ NG HKF
Sbjct: 479 LFELEPDII-GNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKF 537
Query: 458 LAGGIGH 464
G + H
Sbjct: 538 FPGNLNH 544
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 156/329 (47%), Gaps = 48/329 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIK-TGFCGHVYVQTALLKMYGSLR 59
M++ + +++F LLKA G + +G H QT + GFC VYV ++ MY
Sbjct: 140 MRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFC-FVYVGNTMIDMYVKCE 198
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
ID A KVF++MPE+D+I+W ++ A+A G M+ A +L + +P KD+ ++ M++G+A+
Sbjct: 199 SIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQ 258
Query: 120 IGKIHSARYIFDKV-----------------------------------------PAKDV 138
K A FD++ P+ V
Sbjct: 259 NAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHV 318
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KA 197
V ++LI Y+ G +E+A +F M KNV T+++M+ G E + LF M
Sbjct: 319 VIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQ 378
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARI--HVYATDNGLASNPHATTALIDMYAKCGSI 255
+KP+ +T L AC++ G ++ G ++ +Y T + H T ++D+ + G +
Sbjct: 379 TEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDH-YTCMVDLLGRTGRL 437
Query: 256 EQSLEVFYKSQVKDV-FCWNAMILGLALH 283
+++LE+ V+ W A++ +H
Sbjct: 438 QEALELIKTMSVEPHGGVWGALLGACRIH 466
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 239/464 (51%), Gaps = 66/464 (14%)
Query: 5 GVHADNYSFPLLLKA----AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
G H ++ P LLK+ + + + L +H +K G G + V AL++++ +
Sbjct: 201 GHHPTPHTLPSLLKSLALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHAGI-- 258
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
G++ A+ L+ D ++FN +I+ YAR
Sbjct: 259 ----------------------------LGRLSDALVLLRTAASVDASTFNTLITAYARA 290
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G++ AR +FD++PA++ VSW++++ Y AG+ +A
Sbjct: 291 GRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREA----------------------- 327
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ LF M+A V+PD + VL+ACA LG LE G +H Y N +
Sbjct: 328 --------LGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVF 379
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TAL+DMYAKCG ++ ++EVF + K+V W MI GLA+HG G AL+L +M
Sbjct: 380 LGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLG 439
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
VK DDI FIG L AC+H GLV +G ELF M + +G+ K+EHYGCMVDLL R LL+ A
Sbjct: 440 VKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEA 499
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
E++E MP +P I GAL++ C H+++E+ + V K S G ++ N+YA+
Sbjct: 500 REMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKS-GAYVLLGNIYAA 558
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ A R++M + G+ KT G S +E+ G H+F+ G + H
Sbjct: 559 SGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSH 602
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D+ +L A L G +HG V++ TAL+ MY
Sbjct: 334 MQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGE 393
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
+ A +VF+ M EK+++AW +M+ A G+ A++L M V +I G
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCA 453
Query: 118 -ARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + R +FD + K + + ++ G + +A EM +KM +K + +
Sbjct: 454 CTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDAL 513
Query: 171 TWNTMVTG 178
W ++ G
Sbjct: 514 IWGALMAG 521
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 239/464 (51%), Gaps = 66/464 (14%)
Query: 5 GVHADNYSFPLLLKA----AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
G H ++ P LLK+ + + + L +H +K G G + V AL++++ +
Sbjct: 201 GHHPTPHTLPSLLKSLALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHAGI-- 258
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
G++ A+ L+ D ++FN +I+ YAR
Sbjct: 259 ----------------------------LGRLSDALVLLRTAASVDASTFNTLITAYARA 290
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G++ AR +FD++PA++ VSW++++ Y AG+ +A
Sbjct: 291 GRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREA----------------------- 327
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ LF M+A V+PD + VL+ACA LG LE G +H Y N +
Sbjct: 328 --------LGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVF 379
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TAL+DMYAKCG ++ ++EVF + K+V W MI GLA+HG G AL+L +M
Sbjct: 380 LGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLG 439
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
VK DDI FIG L AC+H GLV +G ELF M + +G+ K+EHYGCMVDLL R LL+ A
Sbjct: 440 VKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEA 499
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
E++E MP +P I GAL++ C H+++E+ + V K S G ++ N+YA+
Sbjct: 500 REMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKS-GAYVLLGNIYAA 558
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ A R++M + G+ KT G S +E+ G H+F+ G + H
Sbjct: 559 SGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSH 602
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D+ +L A L G +HG V++ TAL+ MY
Sbjct: 334 MQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGE 393
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
+ A +VF+ M EK+++AW +M+ A G+ A++L M V +I G
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCA 453
Query: 118 -ARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + R +FD + K + + ++ G + +A EM +KM +K + +
Sbjct: 454 CTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDAL 513
Query: 171 TWNTMVTG 178
W ++ G
Sbjct: 514 IWGALMAG 521
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/418 (38%), Positives = 227/418 (54%), Gaps = 41/418 (9%)
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV------------PA---- 135
M HA L D +P D+ FN M GYAR A +F ++ P+
Sbjct: 71 MQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKA 130
Query: 136 -----------------------KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++V +LI YT EM+ A +F K+ V+T+
Sbjct: 131 CASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY 190
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+TGY R E + LF E++A N+KP +T+ SVLS+CA LG+L+ G +H Y
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKK 250
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NG TALIDMYAKCGS++ ++ VF V+D W+AMI+ A+HG+G A+ L
Sbjct: 251 NGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSL 310
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM + + D+ITF+GLL ACSH GLV+EG E F M +GV ++HYGCMVDLLG
Sbjct: 311 FKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLG 370
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L+ A E I +P PT + LLSAC H ++E+G RV + + + G+ +
Sbjct: 371 RAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDS-HGGDYI 429
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG-GIGHLSNLL 469
+ +NL A G+WE+ N R +MN+ G+VK G S +EVN H+F +G G+ +S L
Sbjct: 430 ILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKL 487
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 154/330 (46%), Gaps = 21/330 (6%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+Y+FP LLKA + G LH IK G +VYV L+ MY + +D A
Sbjct: 116 GLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCA 175
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI------DLMPLKDVTSFNIMISGYA 118
+VF+K+ E ++ +N+M+ +A + + A+ L +L P DVT +++ S A
Sbjct: 176 RRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKP-TDVTMLSVL-SSCA 233
Query: 119 RIGKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
+G + +++ + V + +LI Y G ++ A +F+ M V++ W+
Sbjct: 234 LLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSA 293
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN- 233
M+ Y ++ V LF EM+ +PD +T +L AC++ G +E G D
Sbjct: 294 MIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKY 353
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV-FCWNAMILGLALHG---YGYAA 289
G+ ++D+ + G +E++ E ++ W ++ HG G
Sbjct: 354 GVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRV 413
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAG 319
++ + E++DS D +I L + C+ AG
Sbjct: 414 IEQIFELDDS--HGGD--YIILSNLCARAG 439
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 158/482 (32%), Positives = 255/482 (52%), Gaps = 57/482 (11%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD------------AFKVFEKMPEKDIIA 78
++HG ++T V+V + LL + C+DD A+ +F ++ ++
Sbjct: 30 IIHGFLLRTHLISDVFVASRLLAL---ALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFV 86
Query: 79 WNSMLDAFAS----------------------------------------CGQMDHAMKL 98
+N ++ F++ G+ H+ ++
Sbjct: 87 FNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHS-QI 145
Query: 99 IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAG 158
+ DV N ++ YA G I +A IF ++P +DVVSW S++ Y G +E A
Sbjct: 146 VRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAR 205
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
EMF +M +N+ TW+ M+ GY ++ + + +DLF+ MK V + + SV+S+CA+LG
Sbjct: 206 EMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLG 265
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+LE G R H Y + + N TAL+DMY +CG IE+++ VF + KD W+++I
Sbjct: 266 ALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIK 325
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
GLA+HG+ + A+ +M DIT +LSACSH GLV +G E++ M++D+G+
Sbjct: 326 GLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIE 385
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
+LEHYGC+VD+LGRA L A I MP +P ILGALL AC I+++ E+ +RV M
Sbjct: 386 PRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNM 445
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ S G ++ +N+YA GQWE+ R++M + + K G S+IE++G +KF
Sbjct: 446 LIEVKPEHS-GYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFS 504
Query: 459 AG 460
G
Sbjct: 505 MG 506
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 153/317 (48%), Gaps = 44/317 (13%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ DN +FP L+KA+ + +G H Q ++ GF VYV+ +L+ MY + I A
Sbjct: 115 IWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAG 174
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
++F +MP +D+++W SM+ + CG ++ A ++ D MP +++ +++IMI+GYA+
Sbjct: 175 RIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEK 234
Query: 126 ARYIFDKVPAKDVVSWNSLILA-------------------------------------- 147
A +F+ + + VV+ +++++
Sbjct: 235 AIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVD 294
Query: 148 -YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y GE+EKA +F+++ K+ ++W++++ G + + F +M P +T
Sbjct: 295 MYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDIT 354
Query: 207 VTSVLSACANLGSLETGARIHV-YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+T+VLSAC++ G ++ G I+ D G+ ++DM + G + ++ K
Sbjct: 355 LTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM 414
Query: 266 QVKDVFCWNAMILGLAL 282
VK NA ILG L
Sbjct: 415 PVKP----NAPILGALL 427
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV A+ ++ + L + G H +K+ ++ + TAL+ MY
Sbjct: 242 MKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGE 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
I+ A +VFE++P+KD ++W+S++ A G A+ M
Sbjct: 302 IEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQM 343
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 160/469 (34%), Positives = 242/469 (51%), Gaps = 46/469 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D+Y+FP +LKA + IG +HG K G ++V L+ MYG
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK-------- 187
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
CG + A ++D M +DV S+N ++ GYA+ +
Sbjct: 188 -----------------------CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDD 224
Query: 126 ARYIFDKVPA----KDVVSWNSLILAYTNAG--EMEKAGEMFKKMLVKNVITWNTMVTGY 179
A + ++ + D + SL+ A +N + +MF KM K++++WN M+ Y
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 284
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+++ + +E V+L+ M+A +PD +++TSVL AC + +L G +IH Y L N
Sbjct: 285 MKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 344
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMYAKCG +E++ +VF + +DV W AMI G G A+ L ++ DS
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ D I F+ L+ACSHAGL++EG F M + +T +LEH CMVDLLGRA +
Sbjct: 405 GLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKE 464
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMFA 415
A I+ M EP E + GALL AC +H D +IG D++ ++ +S Y ++ +
Sbjct: 465 AYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGY-----YVLLS 519
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA G+WEE RN+M G+ K G+S +EVN H FL G H
Sbjct: 520 NIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 175/393 (44%), Gaps = 54/393 (13%)
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-MISGYARIGKIHSAR 127
+K P++ + +LD + + I L L+ +S + ++ YA + + SAR
Sbjct: 35 QKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASAR 94
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD++P + NVI N M+ Y+ + Y E
Sbjct: 95 KVFDEIPER-------------------------------NVIIINVMIRSYVNNGFYGE 123
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
V +F M NV+PD+ T VL AC+ G++ G +IH AT GL+S L+
Sbjct: 124 GVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVS 183
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY KCG + ++ V + +DV WN++++G A + AL++ EM + D T
Sbjct: 184 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGT 243
Query: 308 FIGLLSACSHAGL--VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL-- 363
LL A S+ V ++F +M K + L + M+ + + + A+EL
Sbjct: 244 MASLLPAVSNTTTENVMYVKDMFFKMGK-----KSLVSWNVMIGVYMKNAMPVEAVELYS 298
Query: 364 -IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYA 419
+EA FEP + ++L AC L +G ++ + K N L + L+ ++YA
Sbjct: 299 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI---DMYA 355
Query: 420 SCGQWEEAN------RWRNMMNDTGIVKTAGSS 446
CG E+A + R++++ T ++ G S
Sbjct: 356 KCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D S +L A G S+ +G +HG + ++ ++ AL+ MY C
Sbjct: 300 MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC 359
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
++ A VFE M +D+++W +M+ A+ G+ A+ KL D + D +F ++
Sbjct: 360 LEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAA 419
Query: 117 YARIGKIHSARYIF 130
+ G + R F
Sbjct: 420 CSHAGLLEEGRSCF 433
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 254/467 (54%), Gaps = 19/467 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G D+++FP +LKA +++ G +H +K+GF Y T LL MY S
Sbjct: 95 MIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCAD 154
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNIMIS 115
+ KVF+ +P+ +++AW ++ + Q A+K+ + M ++T N +I+
Sbjct: 155 MKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIA 214
Query: 116 GYARIGKIHSARYIFDKVPA-----------KDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
A I + R++ ++ +++ +++ Y G ++ A ++F KM
Sbjct: 215 C-AHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKM 273
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+N+++WN+M+ Y + + + E +DLF +M V PD T SVLS CA+ +L G
Sbjct: 274 PQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQ 333
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+H Y G+A++ TAL+DMYAK G + + ++F Q KDV W +MI GLA+HG
Sbjct: 334 TVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHG 393
Query: 285 YGYAALKLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
+G AL + M DS + D IT+IG+L ACSH GLV+E + F M + +G+ EH
Sbjct: 394 HGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREH 453
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
YGCMVDLL RA A L+E M +P +I GALL+ C IH+++ + ++V K+ +
Sbjct: 454 YGCMVDLLSRAGHFREAERLMETMTVQPNIAIWGALLNGCQIHENVCVANQV-KVRLKEL 512
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
G ++ +N+YA G+WEE N R +M I KT G S +E+
Sbjct: 513 EPCQSGVHILLSNIYAKAGRWEEVNVTRKVMKHKRITKTIGHSSVEM 559
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G++ A + +++ +V WN+M+ G++ S + L+ +M PD+ T VL
Sbjct: 52 GDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVL 111
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
AC + + G IH +G ++ + T L+ MY C ++ L+VF +V
Sbjct: 112 KACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVV 171
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
W +I G + Y ALK+ +M+ V+ ++IT + L AC+H+ + G + R+
Sbjct: 172 AWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRI 231
Query: 332 EK 333
K
Sbjct: 232 RK 233
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 179/581 (30%), Positives = 271/581 (46%), Gaps = 123/581 (21%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V +NY+FP LKA L+ G +H I G ++V TALL MY C+ DA
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------------------KLIDLMPL--- 104
+F MP +D++AWN+ML +A G HA+ L+ L+PL
Sbjct: 66 HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125
Query: 105 -------KDVTSFNI-----------------------MISGYARIGKIHSARYIFDKVP 134
V ++ I ++ YA+ G + AR +FD +P
Sbjct: 126 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 185
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK--------------------------- 167
A++ V+W++LI + M +A +FK ML +
Sbjct: 186 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGE 245
Query: 168 -------------NVITWNTMVTGYLRSQLYIEVVDLFDE-------------------- 194
++ N++++ Y ++ L + + LFDE
Sbjct: 246 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 305
Query: 195 -----------MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
M+A NV+PD T+ S++ AC++L +L+ G H GLAS
Sbjct: 306 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 365
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
ALIDMYAKCG I+ S +VF +D+ WN MI G +HG G A L EMN+
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 425
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D +TFI LLSACSH+GLV EG F M +G+T ++EHY CMVDLL R LD A E
Sbjct: 426 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 485
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I++MP + ALL AC +++++++G +V++M+ + G ++ +N+Y++ G+
Sbjct: 486 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI-QELGPEGTGNFVLLSNIYSAAGR 544
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++EA R + G K+ G S IE+NGS H F+ G H
Sbjct: 545 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 585
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + L+ A L++ G HG I G + AL+ MY
Sbjct: 317 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 376
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAF 86
ID + +VF MP +DI++WN+M+ +
Sbjct: 377 IDLSRQVFNMMPSRDIVSWNTMIAGY 402
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 158/475 (33%), Positives = 260/475 (54%), Gaps = 12/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G ++ + + + L G+ +H + I +GF ++ +AL+ MYG
Sbjct: 198 MRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGH 257
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-------PLKDVTSFNIM 113
++ A ++FE+MP+K ++AWNSM+ + G + ++L M L ++S ++
Sbjct: 258 LEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMV 317
Query: 114 ISGYARI--GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
S AR+ GK I +++ DV +SL+ Y G++E A ++FK + V++
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQP-DVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVS 376
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN M++GY+ E + LF EM+ V+ D +T TSVL+AC+ L +LE G IH
Sbjct: 377 WNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLII 436
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ L +N AL+DMYAKCG+++++ VF +D+ W +MI HG+ Y AL+
Sbjct: 437 EKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALE 496
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L EM S VK D + F+ +LSAC HAGLV EGC F++M +G+ ++EHY C++DLL
Sbjct: 497 LFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLL 556
Query: 352 GRARLLDRAIELIEAMP-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
GRA L A E+++ P +L L SAC +H+++++G +A+ + K S
Sbjct: 557 GRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTY 616
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
+++ +N+YAS +W+E R+ M + G+ K G S IE+N F HL
Sbjct: 617 ILL-SNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHL 670
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 186/373 (49%), Gaps = 17/373 (4%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+Y++P + KA G L +G M+H IKTG + V ++L+ MYG + A +
Sbjct: 104 PDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWL 163
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKI 123
F +MPEKD+ WN+++ + G A++ LM + + IS AR+ +
Sbjct: 164 FNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDL 223
Query: 124 HSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ I +++ D ++L+ Y G +E A E+F++M K V+ WN+M++GY
Sbjct: 224 NRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGY 283
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
I + LF M VKP T++S++ C+ L G +H Y N + +
Sbjct: 284 GLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDV 343
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
++L+D+Y KCG +E + ++F V WN MI G G + AL L EM S
Sbjct: 344 FVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKS 403
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH----YGCMVDLLGRAR 355
V++D ITF +L+ACS +++G E+ + + + +KL++ G ++D+ +
Sbjct: 404 YVESDAITFTSVLTACSQLAALEKGKEIHNLI-----IEKKLDNNEVVMGALLDMYAKCG 458
Query: 356 LLDRAIELIEAMP 368
+D A + + +P
Sbjct: 459 AVDEAFSVFKCLP 471
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 114/447 (25%), Positives = 202/447 (45%), Gaps = 53/447 (11%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK-DIIAWNSMLDAFA 87
G ++H + + G +++ L+ Y S D A VF+ M +I WN ++ +
Sbjct: 22 GKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYT 81
Query: 88 SCGQMDHAMKLIDLM---PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK-------- 136
A++L + + P S+ S + G +H RY+ K+
Sbjct: 82 KNYMYVEALELFEKLLHYPYLKPDSYT-YPSVFKACGGLH--RYVLGKMIHTCLIKTGLM 138
Query: 137 -DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
D+V +SL+ Y EKA +F +M K+V WNT+++ Y +S + + ++ F M
Sbjct: 139 MDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLM 198
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
+ +P+ +T+T+ +S+CA L L G IH ++G + ++AL+DMY KCG +
Sbjct: 199 RRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHL 258
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
E ++E+F + K V WN+MI G L G + ++L M + VK T L+ C
Sbjct: 259 EMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVC 318
Query: 316 SHAGLVQE-----GCELFSRMEKDFGVTRKLE--HYGC--------MVDLLGRARL---- 356
S + + E G + +R++ D V L ++ C + L+ ++++
Sbjct: 319 SRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWN 378
Query: 357 -----------LDRAIELIEAMPFEPTES---ILGALLSACVIHQDLEIGDRVAKMVCAK 402
L A+ L M ES ++L+AC LE G + ++ K
Sbjct: 379 VMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEK 438
Query: 403 SNYLSDGELMMFA--NLYASCGQWEEA 427
L + E++M A ++YA CG +EA
Sbjct: 439 K--LDNNEVVMGALLDMYAKCGAVDEA 463
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/487 (33%), Positives = 255/487 (52%), Gaps = 50/487 (10%)
Query: 27 CIGL----MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF--KVFEKMPEKDIIAWN 80
CI L +HG ++ G Y+ T L++ L D + +V E + ++ W
Sbjct: 60 CINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWT 119
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVT--SF---------------------------- 110
+++ + G+ D A+ + M +++T SF
Sbjct: 120 AVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRL 179
Query: 111 ---------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
N MI Y + G I AR +FD++P +DV+SW LI AY G ME A ++F
Sbjct: 180 RGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLF 239
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
+ + K+++ W MVTG+ ++ E ++ FD M+ ++ D +TV +SACA LG+ +
Sbjct: 240 ESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASK 299
Query: 222 TGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
R A +G + + H +ALIDMY+KCG++E+++ VF K+VF +++MILG
Sbjct: 300 YADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILG 359
Query: 280 LALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
LA HG AL L M + +K + +TF+G L+ACSH+GLV +G ++F+ M + FGV
Sbjct: 360 LATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVE 419
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
+HY CMVDLLGRA L A+ELI+ M EP + GALL AC IH + +I + A+
Sbjct: 420 PTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEH 479
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS-VIEVNGSYHKF 457
+ + G ++ +N+Y+S G W R ++ + G+ KT S V++ NG HKF
Sbjct: 480 LFELEPDII-GNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKF 538
Query: 458 LAGGIGH 464
G + H
Sbjct: 539 FPGNLNH 545
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 159/332 (47%), Gaps = 54/332 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIK-TGFCGHVYVQTALLKMY---G 56
M++ + +++F LLKA G + +G H QT + GFC VYV ++ MY G
Sbjct: 141 MRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFC-FVYVGNTMIDMYVKCG 199
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
S+ C A KVF++MPE+D+I+W ++ A+A G M+ A L + +P KD+ ++ M++G
Sbjct: 200 SIVC---ARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTG 256
Query: 117 YARIGKIHSARYIFDKV-----------------------------------------PA 135
+A+ K A FD++ P+
Sbjct: 257 FAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPS 316
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
VV ++LI Y+ G +E+A +F M KNV ++++M+ G E +DLF M
Sbjct: 317 DHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYM 376
Query: 196 KAGN-VKPDYLTVTSVLSACANLGSLETGARI--HVYATDNGLASNPHATTALIDMYAKC 252
+KP+ +T L+AC++ G ++ G ++ +Y T G+ T ++D+ +
Sbjct: 377 VTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQT-FGVEPTRDHYTCMVDLLGRA 435
Query: 253 GSIEQSLEVFYKSQVKDV-FCWNAMILGLALH 283
G ++++LE+ V+ W A++ +H
Sbjct: 436 GRLQEALELIKTMSVEPHGGVWGALLGACRIH 467
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI--EQSLEVFY 263
++ S L C NL ++ +IH + GL + + T LI K G V
Sbjct: 52 SLISKLDDCINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIE 108
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
Q ++ F W A+I G + G A+ + G M + TF LL AC G +
Sbjct: 109 PVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNL 168
Query: 324 GCELFSR 330
G + ++
Sbjct: 169 GRQFHAQ 175
>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09410-like [Glycine max]
Length = 669
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 245/419 (58%), Gaps = 9/419 (2%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
TA++K Y C +A+K+F +MPE+++ +WN M+ ++D A+ L + MP ++
Sbjct: 224 TAMVKAYLDNGCFSEAYKLFLEMPERNVRSWNIMISGCLRANRVDEAIGLFESMPDRNHV 283
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+ M+SG A+ I AR FD +P KD+ +W ++I A + G M++A ++F ++ KN
Sbjct: 284 SWTAMVSGLAQNKMIGIARKYFDLMPYKDMAAWTAMITACVDEGLMDEARKLFDQIPEKN 343
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V +WNTM+ GY R+ E ++LF M +P+ T+TSV+++C + L + H
Sbjct: 344 VGSWNTMIDGYARNSYVGEALNLFVLMLRSCFRPNETTMTSVVTSCDGMVEL---MQAHA 400
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
G N T ALI +Y+K G + + VF + + KDV W AMI+ + HG+G+
Sbjct: 401 MVIHLGFEHNTWLTNALITLYSKSGDLCSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHH 460
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL++ M S +K D++TF+GLLSACSH GLV +G LF ++ + +T K EHY C+V
Sbjct: 461 ALQVFARMLVSGIKPDEVTFVGLLSACSHVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLV 520
Query: 349 DLLGRARLLDRAIELIEAMPFEPT---ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
D+LGRA L+D A++++ +P P+ E++L ALL AC +H D+ I + + + +
Sbjct: 521 DILGRAGLVDEAMDVVATIP--PSARDEAVLVALLGACRLHGDVAIANSIGEKLLELEPS 578
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G ++ AN YA+ GQW+E + R M + + + G S I++ G H F+ G H
Sbjct: 579 -SSGGYVLLANTYAAEGQWDEFAKVRKRMRERNVKRIPGYSQIQITGKNHVFVVGERSH 636
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 157/291 (53%), Gaps = 16/291 (5%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V ++A++ Y + +DDA KVF+ M +++ +W S++ + SCG+++ A+ L D MP
Sbjct: 126 NVVAESAMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMP 185
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++V S+ +++ G+AR G + A F +P K++++W +++ AY + G +A ++F +
Sbjct: 186 ERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLE 245
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +NV +WN M++G LR+ E + LF+ M N +++ T+++S A +
Sbjct: 246 MPERNVRSWNIMISGCLRANRVDEAIGLFESMPDRN----HVSWTAMVSGLAQNKMIGIA 301
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+ +A A TA+I G ++++ ++F + K+V WN MI G A +
Sbjct: 302 RKYFDLMPYKDMA----AWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARN 357
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSAC--------SHAGLVQEGCE 326
Y AL L M SC + ++ T ++++C +HA ++ G E
Sbjct: 358 SYVGEALNLFVLMLRSCFRPNETTMTSVVTSCDGMVELMQAHAMVIHLGFE 408
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N+ I+ R GK+ AR +FD++P +D VS+NS+I Y ++ +A +FK+M +NV+
Sbjct: 69 NVEITILGRHGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVV 128
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+ M+ GY + + +FD M N + TS++S + G +E +H++
Sbjct: 129 AESAMIDGYAKVGRLDDARKVFDNMTQRNA----FSWTSLISGYFSCGKIEEA--LHLF- 181
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
D N + T ++ +A+ G ++ + FY K++ W AM+ +G A
Sbjct: 182 -DQMPERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAY 240
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
KL EM + V++ +I ++S C A V E LF M V+ + MV
Sbjct: 241 KLFLEMPERNVRSWNI----MISGCLRANRVDEAIGLFESMPDRNHVS-----WTAMVSG 291
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACV----IHQDLEIGDRVAKMVCAKSNYL 406
L + +++ A + + MP++ + A+++ACV + + ++ D++ + N +
Sbjct: 292 LAQNKMIGIARKYFDLMPYKDMAA-WTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTM 350
Query: 407 SDG 409
DG
Sbjct: 351 IDG 353
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 25 SSCIGLM----LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80
+SC G++ H I GF + ++ AL+ +Y + A VFE++ KD+++W
Sbjct: 387 TSCDGMVELMQAHAMVIHLGFEHNTWLTNALITLYSKSGDLCSARLVFEQLKSKDVVSWT 446
Query: 81 SMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKV 133
+M+ A+++ G HA+++ M + D +F ++S + +G +H R +FD +
Sbjct: 447 AMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSACSHVGLVHQGRRLFDSI 503
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 146/405 (36%), Positives = 234/405 (57%), Gaps = 2/405 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A ++F +MPE+D++AW +M+D A G++D A L D MP ++V S+N MISGY R
Sbjct: 183 VDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRN 242
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+I A +F K+P +D+ S N ++ + ++++A E+F +M +NV+TW TM+ GYL
Sbjct: 243 HRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYL 302
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + + LF M +P+ +T L AC++L +L G ++H +
Sbjct: 303 KGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAF 362
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+AL+++YAKCG I + ++F S+ KD+ WN +I A HG G A+ L +M ++
Sbjct: 363 VESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENG 422
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ +D+T++ LLSACSH+GLV EG ++F M D + + EHY C++DL RA LD A
Sbjct: 423 YRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDA 482
Query: 361 IELIEAMPFEPTE-SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
LI + +P S+ ALL C H + IG+ A+ + ++ + G + +N+YA
Sbjct: 483 KRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLL-QAEPDNAGTYTLLSNIYA 541
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G+W+EA R+ MN+ G+ K G S IEV H F+A H
Sbjct: 542 SAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSH 586
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/419 (24%), Positives = 186/419 (44%), Gaps = 49/419 (11%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV 107
TAL+ Y + DA ++F++ ++++ W ++L +A +D A L MP ++V
Sbjct: 77 TALVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNV 136
Query: 108 TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
S+N M+ YA G++ A +FD++P +D SWN L+ +G ++KA E+F +M +
Sbjct: 137 VSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPER 196
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+V+ W TMV G RS E LFD M NV ++ +++S ++ +
Sbjct: 197 DVMAWTTMVDGVARSGKVDEARVLFDSMPERNV----VSWNAMISGYTRNHRIDEALDLF 252
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ + +AS T I + ++++ E+F + ++V W M+ G
Sbjct: 253 MKMPERDIASCNIMVTGFI----QNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSE 308
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK-------------- 333
AL L M + + + +TF+G L ACS + EG ++ + K
Sbjct: 309 LALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALM 368
Query: 334 -------DFGVTRKLEHYGCMVDLLGRARLLD---------RAIELIEAMP---FEPTES 374
+ G+ RKL DL+ ++ AI L E M + P +
Sbjct: 369 NVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDV 428
Query: 375 ILGALLSAC----VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
LLSAC ++ + L+I + MV +S + D +L + G+ ++A R
Sbjct: 429 TYVVLLSACSHSGLVDEGLKIFE---SMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKR 484
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 165/350 (47%), Gaps = 25/350 (7%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA-KDV 138
N ++ A+ G++ A KL D P DV S+ ++S YAR G + AR +FD+ A ++V
Sbjct: 46 NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDRPDARRNV 105
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
V+W +L+ Y A +++A +F++M +NV++WNTM+ Y + + LFD M
Sbjct: 106 VTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPV- 164
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
D + +L+ GS++ + + + A T ++D A+ G ++++
Sbjct: 165 ---RDAGSWNILLATLVRSGSVDKARELFGRMPERDVM----AWTTMVDGVARSGKVDEA 217
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+F ++V WNAMI G + AL L +M + + + +I G +
Sbjct: 218 RVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKD-- 275
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE----S 374
++ ELF M + R + + M++ + + + A+ L M T +
Sbjct: 276 --LKRARELFDEMPE-----RNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVT 328
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQ 423
LGA L AC L G +V +M+C K+ + D + N+YA CG+
Sbjct: 329 FLGA-LDACSDLAALCEGKQVHQMIC-KTTFQFDAFVESALMNVYAKCGE 376
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 16/248 (6%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + +F L A L++ C G +H KT F +V++AL+ +Y I A
Sbjct: 321 GTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLA 380
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNIMISGYAR 119
K+F+ EKD+I+WN ++ A+A G A+ L + M DVT + +++S +
Sbjct: 381 RKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVT-YVVLLSACSH 439
Query: 120 IGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV--ITW 172
G + IF D+ A + LI + AG ++ A + + +K W
Sbjct: 440 SGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVW 499
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-ANLGSLETGARIHVYAT 231
+ ++ G + E + +PD ++LS A+ G + A I
Sbjct: 500 SALLGGC--NAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMN 557
Query: 232 DNGLASNP 239
+ GL P
Sbjct: 558 NRGLKKQP 565
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 179/581 (30%), Positives = 271/581 (46%), Gaps = 123/581 (21%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V +NY+FP LKA L+ G +H I G ++V TALL MY C+ DA
Sbjct: 121 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 180
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------------------KLIDLMPL--- 104
+F MP +D++AWN+ML +A G HA+ L+ L+PL
Sbjct: 181 HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 240
Query: 105 -------KDVTSFNI-----------------------MISGYARIGKIHSARYIFDKVP 134
V ++ I ++ YA+ G + AR +FD +P
Sbjct: 241 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 300
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK--------------------------- 167
A++ V+W++LI + M +A +FK ML +
Sbjct: 301 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGE 360
Query: 168 -------------NVITWNTMVTGYLRSQLYIEVVDLFDE-------------------- 194
++ N++++ Y ++ L + + LFDE
Sbjct: 361 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 420
Query: 195 -----------MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
M+A NV+PD T+ S++ AC++L +L+ G H GLAS
Sbjct: 421 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 480
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
ALIDMYAKCG I+ S +VF +D+ WN MI G +HG G A L EMN+
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 540
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D +TFI LLSACSH+GLV EG F M +G+T ++EHY CMVDLL R LD A E
Sbjct: 541 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 600
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I++MP + ALL AC +++++++G +V++M+ + G ++ +N+Y++ G+
Sbjct: 601 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI-QELGPEGTGNFVLLSNIYSAAGR 659
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++EA R + G K+ G S IE+NGS H F+ G H
Sbjct: 660 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 700
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV--VDLFDEMKAGNVKPDYLTVT 208
+G + +A +F ++ +V T+N ++ Y S + L+ M V P+ T
Sbjct: 70 SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
L AC+ L G IH +A GL ++ +TAL+DMY KC + + +F +
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189
Query: 269 DVFCWNAMILGLALHG-YGYAALKLLG-EMNDSCVKADDITFIGLLSACSHAGLVQEG 324
D+ WNAM+ G A HG Y +A LL +M ++ + T + LL + G + +G
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + L+ A L++ G HG I G + AL+ MY
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 491
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAF 86
ID + +VF MP +DI++WN+M+ +
Sbjct: 492 IDLSRQVFNMMPSRDIVSWNTMIAGY 517
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 141/354 (39%), Positives = 216/354 (61%), Gaps = 3/354 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++ YA+ G + SA+ +FD++P + +VS ++I Y G +E A +F M +++++W
Sbjct: 167 LVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSW 226
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N M+ GY + + + LF ++ A G KPD +TV + LSAC+ +G+LETG IHV+
Sbjct: 227 NVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK 286
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ + N T LIDMY+KCGS+E+++ VF + KD+ WNAMI G A+HGY AL+
Sbjct: 287 SSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALR 346
Query: 292 LLGEMND-SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L EM + ++ DITFIG L AC+HAGLV EG +F M +++G+ K+EHYGC+V L
Sbjct: 347 LFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSL 406
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L RA E I+ M + + ++L +C +H D +G +A+ + N + G
Sbjct: 407 LGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIG-LNIKNSGI 465
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YAS G +E + RN+M + GIVK G S IE+ H+F AG H
Sbjct: 466 YVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREH 519
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 47/322 (14%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
++ + ++F LLK+ S G ++H +K G YV T L+ +Y + A
Sbjct: 126 INPNEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQ 181
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
KVF++MPE+ +++ +M+ +A G ++ A L D M +D+ S+N+MI GYA+ G +
Sbjct: 182 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPND 241
Query: 126 ARYIFDKV-----PAKDVVS------------------W-----------------NSLI 145
A +F K+ P D ++ W LI
Sbjct: 242 ALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLI 301
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDY 204
Y+ G +E+A +F K+++ WN M+ GY + + LF+EM+ ++P
Sbjct: 302 DMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD 361
Query: 205 LTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T L ACA+ G + G RI + G+ L+ + + G ++++ E
Sbjct: 362 ITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIK 421
Query: 264 KSQVK-DVFCWNAMILGLALHG 284
+ D W++++ LHG
Sbjct: 422 NMNMDADSVLWSSVLGSCKLHG 443
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 179/581 (30%), Positives = 271/581 (46%), Gaps = 123/581 (21%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V +NY+FP LKA L+ G +H I G ++V TALL MY C+ DA
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------------------KLIDLMPL--- 104
+F MP +D++AWN+ML +A G HA+ L+ L+PL
Sbjct: 66 HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125
Query: 105 -------KDVTSFNI-----------------------MISGYARIGKIHSARYIFDKVP 134
V ++ I ++ YA+ G + AR +FD +P
Sbjct: 126 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 185
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK--------------------------- 167
A++ V+W++LI + M +A +FK ML +
Sbjct: 186 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGE 245
Query: 168 -------------NVITWNTMVTGYLRSQLYIEVVDLFDE-------------------- 194
++ N++++ Y ++ L + + LFDE
Sbjct: 246 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 305
Query: 195 -----------MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
M+A NV+PD T+ S++ AC++L +L+ G H GLAS
Sbjct: 306 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 365
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
ALIDMYAKCG I+ S +VF +D+ WN MI G +HG G A L EMN+
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 425
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D +TFI LLSACSH+GLV EG F M +G+T ++EHY CMVDLL R LD A E
Sbjct: 426 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 485
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I++MP + ALL AC +++++++G +V++M+ + G ++ +N+Y++ G+
Sbjct: 486 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI-QELGPEGTGNFVLLSNIYSAAGR 544
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++EA R + G K+ G S IE+NGS H F+ G H
Sbjct: 545 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 585
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 103/252 (40%), Gaps = 17/252 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + L+ A L++ G HG I G + AL+ MY
Sbjct: 317 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 376
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----DLMPLKDVTSFNIMISG 116
ID + +VF MP +DI++WN+M+ + G A L +L D +F ++S
Sbjct: 377 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 436
Query: 117 YARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + ++ F + + + ++ + G +++A E + M ++ +V
Sbjct: 437 CSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVR 496
Query: 171 TWNTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
W ++ Y L +V + E+ +++ ++++ SA G + A +
Sbjct: 497 VWVALLGACRVYKNIDLGKKVSRMIQELGPEGTG-NFVLLSNIYSAA---GRFDEAAEVR 552
Query: 228 VYATDNGLASNP 239
+ G +P
Sbjct: 553 IIQKVQGFKKSP 564
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 261/466 (56%), Gaps = 11/466 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D + +L +L + L +H +K G ++V A++ +YG L +++
Sbjct: 165 GVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEV 224
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----DLMPLKDVTSFNIMISGYARI 120
KVF+ M +D++ WNS++ GQ+ A+++ D DV + + S A+
Sbjct: 225 RKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQC 284
Query: 121 GKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
G I R + + + D+++ N+++ Y ++E A MF M V++ ++WNT+
Sbjct: 285 GDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTL 344
Query: 176 VTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
+TGY+++ L E + ++D M K +KP T SVL A ++LG+L+ G R+H + G
Sbjct: 345 ITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTG 404
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L + + T +ID+YAKCG +++++ +F ++ + WNA+I G+ +HG+G AL L
Sbjct: 405 LNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFS 464
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+M + D +TF+ LL+ACSHAGLV +G F+ M+ +G+ +HY CMVD+ GRA
Sbjct: 465 QMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRA 524
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
LD A + I MP +P +I GALL AC IH ++E+G +VA + + + G ++
Sbjct: 525 GQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMG-KVASQNLFELDPKNVGYYVLM 583
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+N+YA G+W+ + R+++ + KT G S IEV S + F +G
Sbjct: 584 SNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSG 629
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/441 (25%), Positives = 196/441 (44%), Gaps = 25/441 (5%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDDAFKV 67
D ++FP LL+AA LH ++ G G + AL+ Y + DA++
Sbjct: 70 DAFTFPPLLRAA---QGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F++M +D+ AWN+ML + A+ L M ++ V + +S + + R
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186
Query: 128 --------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
Y ++ N++I Y G +E+ ++F M ++++TWN++++G+
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL-ASN 238
+ V++F M+ V PD LT+ S+ SA A G + G +H Y G +
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD 306
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
A A++DMYAK IE + +F V+D WN +I G +G A+ + M
Sbjct: 307 IIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQK 366
Query: 299 -SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+K TF+ +L A SH G +Q+G + + + G+ + C++DL + L
Sbjct: 367 HEGLKPIQGTFVSVLPAYSHLGALQQGTRMHA-LSIKTGLNLDVYVGTCVIDLYAKCGKL 425
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG---ELMMF 414
D A+ L E P T A++S +H AK + S +G + + F
Sbjct: 426 DEAMLLFEQTPRRSTGP-WNAVISGVGVH------GHGAKALSLFSQMQQEGISPDHVTF 478
Query: 415 ANLYASCGQWEEANRWRNMMN 435
+L A+C ++ RN N
Sbjct: 479 VSLLAACSHAGLVDQGRNFFN 499
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 252/474 (53%), Gaps = 14/474 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ VH + ++F +LKA G S IG +HGQT K GF +V+VQ +L+ MY
Sbjct: 91 MQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQ 150
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
I A VF+K+ ++ +++W S++ + G A+ + M +V I +++
Sbjct: 151 ISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA 210
Query: 117 YARIGKIHSARYIFDKVPA------KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
Y + + + I V D+V SL Y G +E A F +M N+I
Sbjct: 211 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFFFNRMEKPNLI 268
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M++GY + E + LF EM N++ D +T+ S + A A +GSLE + Y
Sbjct: 269 LWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYI 328
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ + + T LIDMYAKCGSI + VF + KDV W+ MI+G LHG+G A+
Sbjct: 329 SKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAI 388
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L EM + V +D TFIGLL+AC ++GLV+EG ELF M D G+ +HY C+VDL
Sbjct: 389 CLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDL 447
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L++A + I +MP +P S+ GALLSAC IH+ + +G+ A+ + Y + G
Sbjct: 448 LGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPY-NTGH 506
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +NLYAS W R MM G+ K G S IE+NG+ F G H
Sbjct: 507 YVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSH 560
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 139/272 (51%), Gaps = 12/272 (4%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV--TSFNIMI---- 114
++ A K F ++ E DI+ WN+++ + +D +++ M + V F +
Sbjct: 50 VNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKA 109
Query: 115 ---SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ IGK IH + + +V NSL+ Y G++ A +F K+ + V+
Sbjct: 110 CGGTSVEGIGKQIHGQTFKYGF--GSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 167
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W ++++GY+++ +E +++F EM+ NVKPD++ + SV++A N+ L G IH
Sbjct: 168 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV 227
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
T GL P +L MYAK G +E + F + + ++ WNAMI G A +GYG A+
Sbjct: 228 TKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAI 287
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
KL EM ++ D IT + A + G ++
Sbjct: 288 KLFREMITKNIRVDSITMRSAVLASAQVGSLE 319
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 144 LILAYTNA----GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
L++ + NA G++ A + F+++ +++ WN ++ GY + + + ++ +M+
Sbjct: 36 LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ 95
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V P+ T VL AC G +IH G SN +L+ MYAK G I +
Sbjct: 96 VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYAR 155
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
VF K + V W ++I G +G AL + EM VK D I + +++A ++
Sbjct: 156 IVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVE 215
Query: 320 LVQEG 324
+ +G
Sbjct: 216 DLGQG 220
>gi|222636781|gb|EEE66913.1| hypothetical protein OsJ_23761 [Oryza sativa Japonica Group]
Length = 595
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 166/483 (34%), Positives = 250/483 (51%), Gaps = 57/483 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV + ++F LL+A +L +HGQ ++ GF V+VQ AL+ +Y RC
Sbjct: 1 MRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYH--RC 58
Query: 61 IDD-------AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN-- 111
A +VF++M ++D+++WNS++ + S G AM + MP ++V S+N
Sbjct: 59 GGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTV 118
Query: 112 ---------IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK 162
+MISGYA G + +AR +FD++ KDVVSW +++ AY G+++ E+F
Sbjct: 119 VAGNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFD 178
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLE 221
M VKN+++WN M+TGY + Y E + F M G +PD T+ SV+SACA LGS+E
Sbjct: 179 HMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVE 238
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
I + + + ALIDM+AKCG + ++ +FYK + + + W MI G A
Sbjct: 239 YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFA 298
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+G AL + M V+ DD FI L+AC+H GL+QEG +F+ M + + + ++
Sbjct: 299 FNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRM 358
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401
EHYGCMVDLLGRA L++ + I + EP S L+S C LE
Sbjct: 359 EHYGCMVDLLGRAELIEYVSKKITEL--EPFNSSYQVLVSNC---SALE----------- 402
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
G+W+ R M + GI K GSS I+V H+FLA
Sbjct: 403 --------------------GRWDGVIDARTSMRNWGIEKVPGSSSIQVGSEVHEFLAKD 442
Query: 462 IGH 464
H
Sbjct: 443 TRH 445
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 163/476 (34%), Positives = 256/476 (53%), Gaps = 18/476 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LGV D+ + +L A + + +G LH +K GF G V LL MY
Sbjct: 250 MLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGN 309
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
++ A +VF KM E I++W S++ A G A+ L D M K D+ + ++
Sbjct: 310 LNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHA 369
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + R + + + ++ S N+L+ Y G ME+A +F ++ VKN+++W
Sbjct: 370 CACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSW 429
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTM+ GY ++ L E + LF +M+ +KPD +T+ VL ACA L +LE G IH +
Sbjct: 430 NTMIGGYSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPACAGLAALEKGREIHGHILR 488
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S+ H AL+DMY KCG + + ++F KD+ W MI G +HG+G A+
Sbjct: 489 KGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAIST 548
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M + ++ ++ +F +L AC+H+GL++EG +LF M+ + + KLEHY CMVDLL
Sbjct: 549 FEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLI 608
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV----CAKSNYLSD 408
R+ L RA + IE MP +P +I GALLS C IH D+E+ ++VA+ + + Y
Sbjct: 609 RSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRY--- 665
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ AN+YA +WEE + + ++ G+ G S IEV G ++ F AG H
Sbjct: 666 --YVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSH 719
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 208/381 (54%), Gaps = 20/381 (5%)
Query: 1 MQELGVHADNYSFPLLLK--AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSL 58
MQELG+ D+Y+F +LK AA C +HG +K GF + V +L+ Y
Sbjct: 149 MQELGIRGDSYTFTCVLKGFAASAKVREC--KRVHGYVLKLGFGSYNAVVNSLIAAYFKC 206
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSM-----LDAFASCGQMDHAMKLIDL-MPLKDVTSFNI 112
++ A +F+++ ++D+++WNSM ++ F+ G ++ +++++L + + T N+
Sbjct: 207 GEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNG-LEFFIQMLNLGVDVDSATLVNV 265
Query: 113 MISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+++ A +G + R Y + V+ N+L+ Y+ G + A E+F KM
Sbjct: 266 LVA-CANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETT 324
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+++W +++ ++R L+ E + LFDEM++ ++PD VTSV+ ACA SL+ G +H
Sbjct: 325 IVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHN 384
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ N + SN + AL++MYAKCGS+E++ +F + VK++ WN MI G + +
Sbjct: 385 HIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNE 444
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC-M 347
AL+L +M +K DD+T +L AC+ +++G E+ + + G L H C +
Sbjct: 445 ALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRK-GYFSDL-HVACAL 501
Query: 348 VDLLGRARLLDRAIELIEAMP 368
VD+ + LL A +L + +P
Sbjct: 502 VDMYVKCGLLVLAQQLFDMIP 522
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 134/277 (48%), Gaps = 8/277 (2%)
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIG 121
++F+ + I WN ++ +A G ++ L + M D +F ++ G+A
Sbjct: 113 RIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASA 172
Query: 122 KIHSARYIFDKVPAKDVVSWN----SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
K+ + + V S+N SLI AY GE+E A +F ++ ++V++WN+M++
Sbjct: 173 KVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMIS 232
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G + ++ F +M V D T+ +VL ACAN+G+L G +H Y G +
Sbjct: 233 GCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSG 292
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
L+DMY+KCG++ + EVF K + W ++I G Y A+ L EM
Sbjct: 293 GVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQ 352
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
++ D ++ AC+ + + +G E+ + ++K+
Sbjct: 353 SKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKN 389
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 185 YIEVVDLFDEMK----AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ E+ DL + MK + + + T SVL CA L SLE G R+H + NG+A +
Sbjct: 34 FCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEV 93
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
L+ MY CG + + +F +F WN ++ A G ++ L +M +
Sbjct: 94 LGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELG 153
Query: 301 VKADDITFIGLLSACSHAGLVQE 323
++ D TF +L + + V+E
Sbjct: 154 IRGDSYTFTCVLKGFAASAKVRE 176
>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
Length = 567
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 233/403 (57%), Gaps = 1/403 (0%)
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
DDA ++F +MP+++++++ +M+D A G++ A ++ D MP +++ S+ MISGY G
Sbjct: 128 DDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENG 187
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
A +F+ +P K+VV+ ++I +Y G++E A +F + K+VI+WNTM+ GY+
Sbjct: 188 MFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVH 247
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ E + L M VKPD+ T+ +VL+AC+ L L G H A L S
Sbjct: 248 NGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISF 307
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
+ AL+ MY+KCG++ +S VF + KD+ WN +I A HG + L EM + +
Sbjct: 308 SNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGL 367
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
DDITF+ +LSAC H G V +LF M + ++ + EHY C+VD+L RA L++A
Sbjct: 368 IPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKAS 427
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
I+ MP E +++ G+LL AC +H ++++G+ AKM+ +S+ S G ++ +N+YA+
Sbjct: 428 SYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLV-QSDSESSGPYVILSNIYAAA 486
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G W + N+ R M + G+ K G S E+ H F+ G H
Sbjct: 487 GMWGQVNQVRGQMKERGVKKQPGYSWTEIANEVHMFVGGDASH 529
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 137/265 (51%), Gaps = 13/265 (4%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQ--MDHAMKLID-LMPLKDVTSFNIMISGYARI 120
A +VF+ MP +D+++WN++L A G+ + A +L D MP +DV S+N +I+G
Sbjct: 34 ARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSRDVVSWNSIIAGCLAH 93
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + +A F P ++V +WN+++ G + A +F +M +NV+++ TMV G
Sbjct: 94 GDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDGLA 153
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NP 239
R ++FD M N+ ++ +++S G +E G + + N
Sbjct: 154 RRGEVARAREVFDAMPDRNL----VSWAAMIS-----GYVENGMFVEATKLFEAMPEKNV 204
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
A TA+I Y K G +E + +F + KDV WN MI G +G+G A++L M
Sbjct: 205 VACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFRE 264
Query: 300 CVKADDITFIGLLSACSHAGLVQEG 324
VK D T I +L+ACS L+++G
Sbjct: 265 GVKPDHATLIAVLTACSALALLRQG 289
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 127/251 (50%), Gaps = 20/251 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
TA++ Y ++ A ++F+ + KD+I+WN+M+ + G + AM+L +M + V
Sbjct: 208 TAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVK 267
Query: 109 SFNIMI-------SGYARIGKIHSARYIFDKVPAKDVVSW-NSLILAYTNAGEMEKAGEM 160
+ + S A + + S I K + +S+ N+L+ Y+ G + ++ +
Sbjct: 268 PDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELV 327
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
F + K++++WNT++ Y + Y +V+ LF EM+ + PD +T SVLSAC ++G +
Sbjct: 328 FINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKV 387
Query: 221 ETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF------CW 273
+ ++ + ++ ++ ++D+ ++ G +E++ S +KD+ W
Sbjct: 388 DASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKA-----SSYIKDMPLEAEKNVW 442
Query: 274 NAMILGLALHG 284
+++ +HG
Sbjct: 443 GSLLGACQMHG 453
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D+ + +L A L+ G H IK + AL+ MY + ++
Sbjct: 265 GVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGES 324
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMD------HAMKLIDLMPLKDVTSFNIMISGYA 118
VF + KDI++WN+++ A+A G+ H M++ L+P D +F ++S
Sbjct: 325 ELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIP--DDITFLSVLSACG 382
Query: 119 RIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLV---KNVI 170
+GK+ ++ +FD + +K +S + ++ + AG++EKA K M + KNV
Sbjct: 383 HVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNV- 441
Query: 171 TWNTMV 176
W +++
Sbjct: 442 -WGSLL 446
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 116/311 (37%), Gaps = 62/311 (19%)
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY--IEVVDLF 192
A+ ++ N I A AG++ A +F M ++V++WN ++T R+ + LF
Sbjct: 12 ARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLF 71
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
DE D ++ S+++ C G L+ +
Sbjct: 72 DEAMPSR---DVVSWNSIIAGCLAHGDLDAAS---------------------------- 100
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
F + ++V WNAM+ GL G A +L GEM K + +++ ++
Sbjct: 101 -------AYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMP----KRNVVSYTTMV 149
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
+ G V E+F M R L + M+ + A +L EAMP +
Sbjct: 150 DGLARRGEVARAREVFDAMPD-----RNLVSWAAMISGYVENGMFVEATKLFEAMPEKNV 204
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKS----NYLSDGELMMFANLYASCGQWEEAN 428
+ + S C D+E R+ + AK N + G Y G EEA
Sbjct: 205 VACTAMITSYCK-QGDVESARRLFDGIRAKDVISWNTMIAG--------YVHNGHGEEAM 255
Query: 429 RWRNMMNDTGI 439
R +M G+
Sbjct: 256 RLHAVMFREGV 266
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 166/513 (32%), Positives = 267/513 (52%), Gaps = 51/513 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSL-- 58
M+ G D+ FP +LK+ ++ G +HG ++ G +Y AL+ MY L
Sbjct: 96 MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLG 155
Query: 59 -----------------------------RCI-----DDAFKVFEKMPEKDIIAWNSMLD 84
CI D +VFE MP KD++++N+++
Sbjct: 156 MGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIA 215
Query: 85 AFASCGQMDHAMKLIDLMPLKDVT--SFNI-----MISGYARIGK---IHSARYIFDKVP 134
+A G + A++++ M D+ SF + + S Y + K IH Y+ K
Sbjct: 216 GYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHG--YVIRKGI 273
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
DV +SL+ Y + +E + +F ++ ++ I+WN++V GY+++ Y E + LF +
Sbjct: 274 DSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQ 333
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M VKP + +SV+ ACA+L +L G ++H Y G SN +AL+DMY+KCG+
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN 393
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
I+ + ++F + V D W A+I+G ALHG+G+ A+ L EM VK + + F+ +L+A
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 453
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
CSH GLV E F+ M K +G+ ++LEHY + DLLGRA L+ A I M EPT S
Sbjct: 454 CSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGS 513
Query: 375 ILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
+ LLS+C +H++LE+ ++VA K+ S + G ++ N+YAS G+W+E + R
Sbjct: 514 VWSTLLSSCSVHKNLELAEKVAEKIFTVDSENM--GAYVLMCNMYASNGRWKEMAKLRLR 571
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
M G+ K S IE+ H F++G H S
Sbjct: 572 MRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPS 604
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 36/220 (16%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+I YTN + +A +FK + V+ W +++ + L+ + + F EM+A PD
Sbjct: 45 VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPD 104
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC---GS------ 254
+ SVL +C + L G +H + G+ + + AL++MYAK GS
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGN 164
Query: 255 ---------------------------IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
I+ VF KDV +N +I G A G
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYE 224
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
AL+++ EM + +K D T +L S V +G E+
Sbjct: 225 DALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEI 264
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 260/501 (51%), Gaps = 47/501 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D + LL+A +S +H Q I TG Y+Q L+K+Y + A
Sbjct: 61 GECPDKQTLLYLLQAVNFISQV---KQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLA 117
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCG------QMDHAMKLIDLMP--------------- 103
+VFEKMP DI+++N M+ +A G ++ H M + L P
Sbjct: 118 HQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQL 177
Query: 104 ---------------LKDVTSFNIMISG-----YARIGKIHSARYIFDKVPAKDVVSWNS 143
K S N+++ Y + K+ A F + KD+VSWN
Sbjct: 178 GNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNM 237
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
++ GE+E+A F +M +++++WN++VTGY + V +L +M V PD
Sbjct: 238 IVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPD 297
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T+ S++SA G+L+ G H + + + +ALIDMY KCGSIE++ VF
Sbjct: 298 TVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFK 357
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ KDV W MI GLA HGYG AL+L EM + V DD+TF+ +LSACSH+GLV +
Sbjct: 358 EINKKDVTVWTTMITGLAFHGYGSKALELFSEMQED-VSPDDVTFVSVLSACSHSGLVDQ 416
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G ++FS M D+G+ +EHYGC+VDLL R+ L A ++I+ MP +P+ SI GA+L+AC
Sbjct: 417 GIKVFSSM-TDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNAC 475
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
D+E+ + +A + +G + +N+YA+ G+W + + R M G+ KTA
Sbjct: 476 QAQGDVELAE-IASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTA 534
Query: 444 GSSVIEVNGSYHKFLAGGIGH 464
G S + V+G H F++ H
Sbjct: 535 GCSSVVVDGVVHNFISADKCH 555
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 149/319 (46%), Gaps = 43/319 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHG--QTIKTGFCGHVYVQTALLKMYGSL 58
M LG+ D ++ LL + G L + G +HG + K ++ + ALL MY
Sbjct: 155 MVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKC 214
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
+ ++ A + F + EKDI++WN ++ A G+++ A MP +D+ S+N +++GYA
Sbjct: 215 QKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYA 274
Query: 119 RIGKIHSAR-YIFDKVPAK---DVVSWNSLILA--------------------------- 147
G S + I D V K D V+ SL+ A
Sbjct: 275 CRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAF 334
Query: 148 --------YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
Y G +E+A +FK++ K+V W TM+TG + ++LF EM+ +
Sbjct: 335 LGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQE-D 393
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V PD +T SVLSAC++ G ++ G ++ TD G+ L+D+ A+ G + ++
Sbjct: 394 VSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAK 453
Query: 260 EVFYKSQVKDVFC-WNAMI 277
++ + +K W AM+
Sbjct: 454 DIIDQMPMKPSRSIWGAML 472
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 136/302 (45%), Gaps = 38/302 (12%)
Query: 61 IDDAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+D A +F P ++ +N+++ AF+S +++ L+ + ++
Sbjct: 16 LDLAITLFNHFTPNPNLFIYNTLISAFSSLKKIESFYLYNVLLSSGECPDKQTLLYLLQA 75
Query: 120 IGKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ I + I + + S+ N+LI Y G + A ++F+KM +++++N M
Sbjct: 76 VNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVM 135
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG- 234
+ GY + +E + LF EM ++PD T+ +L +C LG+++ G +H +
Sbjct: 136 IVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKP 195
Query: 235 -LASNPHATTALIDMYAKC-------------------------------GSIEQSLEVF 262
++SN AL+DMY KC G +EQ+ F
Sbjct: 196 TISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFF 255
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
Y+ +D+ WN+++ G A G + +L+ +M V D +T I L+SA + +G +
Sbjct: 256 YQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALD 315
Query: 323 EG 324
+G
Sbjct: 316 QG 317
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 4/166 (2%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N+ +NT+++ + S IE L++ + + PD T+ +L A + ++ +IH
Sbjct: 31 NLFIYNTLISAF-SSLKKIESFYLYNVLLSSGECPDKQTLLYLLQAVNFISQVK---QIH 86
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
A GL S + LI +Y + G + + +VF K D+ +N MI+G A G+G
Sbjct: 87 CQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGL 146
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
A++L EM ++ D+ T +GLL +C G V+ G + ME+
Sbjct: 147 EAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMER 192
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 167/472 (35%), Positives = 258/472 (54%), Gaps = 11/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V D + ++ A L +G +HG IKTGF V V +L++M+ S+ C
Sbjct: 287 MREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGC 346
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI----SG 116
D+A VF KM KD+++W +M+ + G + A++ +M + V I I S
Sbjct: 347 WDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSA 406
Query: 117 YARIGKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + + + + S+ NSLI Y+ ++KA E+F ++ KNVI+W
Sbjct: 407 CAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISW 466
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ G + E + F +M ++KP+ +T+ SVLSACA +G+L G IH +A
Sbjct: 467 TSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALR 525
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
GL + AL+DMY +CG +E + F + KDV WN ++ G A G G A++L
Sbjct: 526 TGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVEL 584
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M +S V D+ITF LL ACS +G+V +G E F ME F + L+HY +VDLLG
Sbjct: 585 FHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLG 644
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L+ A E I+ MP +P +I GALL+AC I+Q++E+G+ A+ + + + S G +
Sbjct: 645 RAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHI-FEMDTKSVGYYI 703
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ NLYA G+W+E R R +M + + G S +EV G H FL G H
Sbjct: 704 LLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFH 755
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 17/380 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQEL V + ++ LL+ ++ G +H KT V + ALL M+
Sbjct: 85 MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGD 144
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMIS- 115
+ +A+ VF KM E+D+ +WN ++ +A G D A+ L M DV +F ++
Sbjct: 145 LVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRT 204
Query: 116 -------GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
R +H RY F+ DV N+LI Y G++ A +F +M ++
Sbjct: 205 CGGLPDLARGREVHLHVIRYGFES----DVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
I+WN M++GY + + +E + LF M+ V PD +T+TSV+SAC LG G +H
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y G + +LI M++ G +++ VF K + KD+ W AMI G +G
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK 380
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A++ M V D+IT +LSAC+ GL+ +G L ++ G+T + ++
Sbjct: 381 AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRT-GLTSYVIVANSLI 439
Query: 349 DLLGRARLLDRAIELIEAMP 368
D+ + R +D+A+E+ +P
Sbjct: 440 DMYSKCRCIDKALEVFHRIP 459
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%)
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
D M+ V + T ++L C + G+R+H Y + AL+ M+ +
Sbjct: 82 LDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVR 141
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
G + ++ VF K +D+F WN ++ G A GY AL L M ++ D TF +
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCV 201
Query: 312 LSAC 315
L C
Sbjct: 202 LRTC 205
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/461 (34%), Positives = 251/461 (54%), Gaps = 11/461 (2%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L A L IG +HG ++ GF V + TAL+ MY + A +F+ M E++
Sbjct: 242 VLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERN 301
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----ARIGKIHSARYIFD 131
+++WNSM+DA+ AM + M + V ++ + G A +G + R+I
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI-H 360
Query: 132 KVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
K+ ++V NSLI Y E++ A MF K+ + +++WN M+ G+ ++ I
Sbjct: 361 KLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPI 420
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E ++ F +M+A VKPD T SV++A A L IH N L N TTAL+
Sbjct: 421 EALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALV 480
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
DMYAKCG+I + +F + V WNAMI G HG G AAL+L EM ++ + +
Sbjct: 481 DMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGV 540
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
TF+ ++SACSH+GLV+ G + F M++++ + ++HYG MVDLLGRA L+ A + I
Sbjct: 541 TFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQ 600
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426
MP +P ++ GA+L AC IH+++ ++VA+ + + N G ++ AN+Y + WE+
Sbjct: 601 MPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLF-ELNPEDGGYHVLLANIYRAASMWEK 659
Query: 427 ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
+ R M G+ KT G S++E+ H F +G H S+
Sbjct: 660 VGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSS 700
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 214/440 (48%), Gaps = 51/440 (11%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y+F LLK G + +G +HG +K+GF ++ T L MY R + +A KVF++
Sbjct: 136 YNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDR 195
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-TSFNIMISGYA--------RIG 121
MPE+D+++WN+++ ++ G A+++++LM +++ SF ++S RIG
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIG 255
Query: 122 K-IH--SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
K IH + R FD + V +L+ Y G ++ A +F ML +NV++WN+M+
Sbjct: 256 KEIHGYAMRAGFDSL----VNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDA 311
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y++++ E + +F +M VKP ++V L ACA+LG LE G IH + + L N
Sbjct: 312 YVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRN 371
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+LI MY KC ++ + +F K Q + + WNAMILG A +G AL +M
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQA 431
Query: 299 SCVKADDITFIGLLSACS------HA----GLVQEGCE--------------------LF 328
VK D T++ +++A + HA G+V C +
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMI 491
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVI 385
+R+ D R + + M+D G + A+EL E M P +++SAC
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSH 551
Query: 386 HQDLEIGDRVAKMVCAKSNY 405
+E G + M+ K NY
Sbjct: 552 SGLVEAGLKCFHMM--KENY 569
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 164/333 (49%), Gaps = 13/333 (3%)
Query: 38 KTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMK 97
K G QT L+ ++ +D+A +VFE + +K + + +ML FA +D A+K
Sbjct: 62 KNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALK 121
Query: 98 LIDLMPLKDVT----SFNIMI-----SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILA 147
M +V +F ++ R+GK IH + + D+ + L
Sbjct: 122 FFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHG--LLVKSGFSLDLFAMTGLENM 179
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y ++ +A ++F +M +++++WNT+V GY ++ + +++ + M N+KP ++T+
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITI 239
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
SVL A + L + G IH YA G S + TAL+DMYAKCGS++ + +F
Sbjct: 240 VSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLE 299
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
++V WN+MI + A+ + +M D VK D++ +G L AC+ G ++ G
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RF 358
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
++ + + R + ++ + + + +D A
Sbjct: 359 IHKLSVELELDRNVSVVNSLISMYCKCKEVDTA 391
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 10/293 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + GV + S L A L G +H +++ +V V +L+ MY +
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKE 387
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A +F K+ + I++WN+M+ FA G+ A+ M + D ++ +I+
Sbjct: 388 VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITA 447
Query: 117 YARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + H A++I V K+V +L+ Y G + A +F M ++V TW
Sbjct: 448 IAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTW 507
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYAT 231
N M+ GY + ++LF+EM+ G ++P+ +T SV+SAC++ G +E G + H+
Sbjct: 508 NAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKE 567
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILGLALH 283
+ + + A++D+ + G + ++ + + VK V + AM+ +H
Sbjct: 568 NYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIH 620
>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 647
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 147/427 (34%), Positives = 246/427 (57%), Gaps = 21/427 (4%)
Query: 42 CGH-----VYVQTALLKMYGSLRCIDDAFKVFEKMPE-------------KDIIAWNSML 83
CG+ V+ L+ YG +++A ++F+ +P+ +++++WNSM+
Sbjct: 223 CGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMM 282
Query: 84 DAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
+ G + A +L D M +D S+N MISGY +I + A +F ++P DV+SWN
Sbjct: 283 MCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFREMPIPDVLSWNL 342
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
++ + G++ A + F++M +KN+I+WN+++ GY +++ Y + LF M+ +PD
Sbjct: 343 IVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPD 402
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T++SV+S C L +L G +IH T + +P +LI MY++CG+I + VF
Sbjct: 403 RHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSP-INNSLITMYSRCGAIVDACTVFN 461
Query: 264 KSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ ++ KDV WNAMI G A HG AL+L M + ITFI +++AC+HAGLV+
Sbjct: 462 EIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMNACAHAGLVE 521
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EG F M D+G+ R++EH+ +VD+LGR L A++LI MPF+P +++ GALLSA
Sbjct: 522 EGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLSA 581
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C +H ++E+ VA + S ++ N+YA+ GQW++A R +M + + K
Sbjct: 582 CRVHNNVELA-LVAADALIRLEPESSAPYVLLYNIYANLGQWDDAESVRVLMEEKNVKKQ 640
Query: 443 AGSSVIE 449
AG S ++
Sbjct: 641 AGYSWVD 647
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 175/386 (45%), Gaps = 58/386 (15%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--A 118
+ +A +F+ M +D + WNSM+ + ++ A +L D MP +DV S+N+++SGY
Sbjct: 55 LSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYFSC 114
Query: 119 RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
R + + R +F+ +P +D VSWN++I Y G M++A ++F M +N ++ N ++T
Sbjct: 115 RGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALIT 174
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDY--LTVTSVLSACANLGSLETGARIHVYATDNGL 235
G+L + VD F M P++ ++++++S G L+ A I + NG
Sbjct: 175 GFLLNGDVDSAVDFFRTM------PEHYSTSLSALISGLVRNGELDMAAGI-LCECGNGD 227
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVF-------------YKSQVKDVFCWNAMILGLAL 282
HA LI Y + G +E++ +F + ++V WN+M++
Sbjct: 228 DDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVK 287
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME---------- 332
G +A +L M V+ D ++ ++S ++E +LF M
Sbjct: 288 AGDIVSARELFDRM----VEQDTCSWNTMISGYVQISNMEEASKLFREMPIPDVLSWNLI 343
Query: 333 -------------KDFGVTRKLEH---YGCMVDLLGRARLLDRAIELIEAMPFE---PTE 373
KDF L++ + ++ + AI+L M FE P
Sbjct: 344 VSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDR 403
Query: 374 SILGALLSACVIHQDLEIGDRVAKMV 399
L +++S C +L +G ++ ++V
Sbjct: 404 HTLSSVMSVCTGLVNLYLGKQIHQLV 429
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 143/311 (45%), Gaps = 57/311 (18%)
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
R +++ ++FE MP++D ++WN+++ +A G+MD A+KL + MP ++ S N +I+G+
Sbjct: 118 RFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFL 177
Query: 119 RIGKIHSARYIFDKVPA---------------------------------KDVV-SWNSL 144
G + SA F +P D+V ++N+L
Sbjct: 178 LNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGELDMAAGILCECGNGDDDLVHAYNTL 237
Query: 145 ILAYTNAGEMEKAGEMF-------------KKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
I Y G +E+A +F ++ +NV++WN+M+ Y+++ + +L
Sbjct: 238 IAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSAREL 297
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
FD M V+ D + +++S + ++E +++ + S ++ +A+
Sbjct: 298 FDRM----VEQDTCSWNTMISGYVQISNMEEASKLFREMPIPDVLS----WNLIVSGFAQ 349
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
G + + + F + +K++ WN++I G + A++L M + D T +
Sbjct: 350 KGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSV 409
Query: 312 LSACSHAGLVQ 322
+S C+ GLV
Sbjct: 410 MSVCT--GLVN 418
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 35/274 (12%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N IS R G++ AR +FD + +D V+WNS+I Y + E+ +A ++F +M ++V+
Sbjct: 43 NKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVV 102
Query: 171 TWNTMVTGYLR---SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI- 226
+WN +V+GY S+ E LF+ M + D ++ +V+S A G ++ ++
Sbjct: 103 SWNLIVSGYFSCRGSRFVEEGRRLFELMP----QRDCVSWNTVISGYAKNGRMDQALKLF 158
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+ N ++SN ALI + G ++ +++ F +A+I GL +G
Sbjct: 159 NAMPERNAVSSN-----ALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGEL 213
Query: 287 YAALKLLGEMNDSCVKADDI---TFIGLLSACSHAGLVQEGCELFSRMEKDFG------- 336
A +L E C DD + L++ G V+E LF + D G
Sbjct: 214 DMAAGILCE----CGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQR 269
Query: 337 -VTRKLEHYGCMV-------DLLGRARLLDRAIE 362
R + + M+ D++ L DR +E
Sbjct: 270 RFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVE 303
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/480 (32%), Positives = 253/480 (52%), Gaps = 51/480 (10%)
Query: 32 LHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
+H +K G V V AL+ Y + R + A +F++MP++D+++W +++D +A G
Sbjct: 162 VHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRG 221
Query: 91 QMDHAMKLIDLMPL----------------------------------------KDVTSF 110
D A ++ M + + V
Sbjct: 222 LADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLE 281
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I + + G SAR +FD + KDV SW +++ AY G++E A +F M +N +
Sbjct: 282 NALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAV 341
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W+ M+ Y ++ E V LF M V+P + SVLSACA LG L+ G I+
Sbjct: 342 SWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIY--- 398
Query: 231 TDNGLASNPHATT-----ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
DN + S T A ID+YAKCG + + ++F + ++V WN+MI+ A+HG
Sbjct: 399 -DNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQ 457
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
L+L ++ +C+ D+ITF+GLLSACSH+GLV EG F M+ +G+ K EHY
Sbjct: 458 SEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYA 517
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
CM+DLLG+ LL+ A E+ + MP E E+ GALL+AC ++ ++EIG+ A + + N
Sbjct: 518 CMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKL-VQLNP 576
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
L G ++ + +YAS +W++ R +M + G+ K G S IEV+G +H+FL + H+
Sbjct: 577 LDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEVDGKFHEFLVADVSHV 636
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 151/326 (46%), Gaps = 50/326 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + + ++ A G + G M++ G V ++ AL+ M+G C A
Sbjct: 238 GLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASA 297
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY------- 117
+VF+ M KD+ +W +M++A+A CG ++ A +L D MP ++ S++ MI+ Y
Sbjct: 298 REVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPE 357
Query: 118 ----------------------------ARIGKIHSARYIFDK--VPAKDVVS---WNSL 144
A++G + R+I+D + K V++ N+
Sbjct: 358 EAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAF 417
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I Y G+ + A ++F +M +NV++WN+M+ + EV+ LF+++K + PD
Sbjct: 418 IDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDE 477
Query: 205 LTVTSVLSACANLGSLETGARIH-----VYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+T +LSAC++ G + G R +Y G+ +ID+ K G +E++
Sbjct: 478 ITFLGLLSACSHSGLVSEGRRYFKEMKLIY----GIEPKSEHYACMIDLLGKIGLLEEAF 533
Query: 260 EVFYKSQVK-DVFCWNAMILGLALHG 284
EV ++ D W A++ ++G
Sbjct: 534 EVAKGMPMETDEAGWGALLNACRMYG 559
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 119/271 (43%), Gaps = 11/271 (4%)
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN---LGSLETGARIHVYA 230
TM+ +LR++L LF + ++ D T+ + A A+ S G +H A
Sbjct: 107 TMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGEGVHCVA 166
Query: 231 TDNG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
G +A + AL+ YA S+ + +F + +DV W ++ G A G A
Sbjct: 167 LKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEA 226
Query: 290 LKLLGEMNDS-CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
++ M + ++ +++T + ++SA GL+ G + R D GV R + ++
Sbjct: 227 WRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFG-RMVYRYVADGGVGRSVNLENALI 285
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
D+ G+ A E+ ++M + S +++A DLE R+ + + N +S
Sbjct: 286 DMFGKFGCAASAREVFDSMAVKDVYS-WTTMVNAYAKCGDLESAARLFDDM-PRRNAVS- 342
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGI 439
M+ A Y+ Q EEA R M + G+
Sbjct: 343 WSCMIAA--YSQANQPEEAVRLFKAMIEEGV 371
>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 146/415 (35%), Positives = 240/415 (57%), Gaps = 16/415 (3%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMP-------------EKDIIAWNSMLDAFASCGQMDHA 95
L+ YG +D+A K+F+++P +++++WN+M+ + G + A
Sbjct: 196 NTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFA 255
Query: 96 MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEME 155
+L D M +D S+N MISGY + + A +F ++P D+ SWN +I + G+++
Sbjct: 256 RELFDQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLD 315
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
+ ++F +M KN+++WN+++TGY ++ YI + +F +M+ KPD T++SVLS A
Sbjct: 316 RVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSA 375
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWN 274
+ L+ G +IH T + P ALI MY++CG+I ++ +F + ++ K+V WN
Sbjct: 376 GIVDLQLGMQIHQLVTKTVIPDVP-INNALITMYSRCGAIIEAGTIFDEVKLQKEVISWN 434
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
AMI G A HGY AL++ M V+ ITFI +L AC+HAGLV+EG E+F M +
Sbjct: 435 AMIGGYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADE 494
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
FG+ +EHY +VD++ R L++A++LI +MPFEP +++ GALLSA +H +E+ R
Sbjct: 495 FGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVA-R 553
Query: 395 VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
VA + S ++ N+YA GQW+ A R MM + I K A S ++
Sbjct: 554 VAAEALIRLEPDSSAPYVLLYNMYADVGQWDSAAEVRIMMERSNIKKQAAYSWVD 608
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 163/328 (49%), Gaps = 35/328 (10%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR- 119
ID+A +F++M E + ++WN+++ A+ ++ A KL D MP +D+ S+N+MISGY
Sbjct: 13 IDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIVSWNLMISGYVSC 72
Query: 120 --IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
I + R +FD++P +D+VSWN++I Y G M++A MFK M +V++WN +VT
Sbjct: 73 HGIRFLKEGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLMPEGDVVSWNAIVT 132
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV-YATDNGLA 236
G+L++ ++ F+ M + D ++++++S G L+ AR+ V + D G
Sbjct: 133 GFLQNGDVARAIEYFERMP----ERDAASLSALVSGLIRNGELDEAARVVVRFERDGGRK 188
Query: 237 SN-PHATTALIDMYAKCGSIEQSLEVFYK-------------SQVKDVFCWNAMILGLAL 282
N A LI Y + ++++ ++F + ++V WN MI+
Sbjct: 189 ENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVK 248
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD--FGVTRK 340
G A +L +M ++ D I++ ++S + + E LF M F +
Sbjct: 249 AGNIVFARELFDQM----MERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKM 304
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ + + D LDR +L MP
Sbjct: 305 IAGHAQIGD-------LDRVNDLFGRMP 325
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 172/373 (46%), Gaps = 34/373 (9%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ---MDHAMKLIDLMPLK 105
A+++ Y R I A K+F++MP++DI++WN M+ + SC + L D MP +
Sbjct: 32 NAIIRAYVKRREIAKARKLFDEMPQRDIVSWNLMISGYVSCHGIRFLKEGRNLFDRMPER 91
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D+ S+N MISGYA+ G++ A +F +P DVVSWN+++ + G++ +A E F++M
Sbjct: 92 DIVSWNTMISGYAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMP 151
Query: 166 VKNVITWNTMVTGYLRSQLYIE---VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
++ + + +V+G +R+ E VV F+ + G K + L + L A
Sbjct: 152 ERDAASLSALVSGLIRNGELDEAARVVVRFE--RDGGRKENLLQAYNTLIAGYGRRDRVD 209
Query: 223 GAR----------IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
AR D N + +I Y K G+I + E+F + +D
Sbjct: 210 EARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQMMERDTIS 269
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WN MI G A +L EM + D ++ +++ + G + +LF RM
Sbjct: 270 WNTMISGYVNMLDMDEASRLFCEMPN----PDIFSWNKMIAGHAQIGDLDRVNDLFGRMP 325
Query: 333 KDFGVTRK--LEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQ 387
+ V+ + Y D +G AI++ M E P L ++LS
Sbjct: 326 QKNLVSWNSVITGYEKNDDYIG-------AIKIFIQMQVEGEKPDRHTLSSVLSVSAGIV 378
Query: 388 DLEIGDRVAKMVC 400
DL++G ++ ++V
Sbjct: 379 DLQLGMQIHQLVT 391
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 115/260 (44%), Gaps = 41/260 (15%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N IS A+ G+I AR +FD++ + VSWN++I AY E+ KA ++F +M ++++
Sbjct: 1 NKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIV 60
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN M++GY+ +C + L+ G +
Sbjct: 61 SWNLMISGYV--------------------------------SCHGIRFLKEGRNLFDRM 88
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ + S +I YAK G ++++L +F DV WNA++ G +G A+
Sbjct: 89 PERDIVS----WNTMISGYAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAI 144
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-LEHYGCMVD 349
+ M + D + L+S G + E + R E+D G L+ Y ++
Sbjct: 145 EYFERMPER----DAASLSALVSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIA 200
Query: 350 LLGRARLLDRAIELIEAMPF 369
GR +D A +L + +PF
Sbjct: 201 GYGRRDRVDEARKLFDQIPF 220
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 164/466 (35%), Positives = 262/466 (56%), Gaps = 12/466 (2%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D Y++P + KA + G +HG ++ G+ ++Q++LL Y I +A +VF
Sbjct: 104 DKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVF 163
Query: 69 EKMPEKDIIAWNSMLDAFASCGQ-MDHAMKLIDLMPLKDV-----TSFNIMI----SGYA 118
++ KD++ WN+++ +A G +D +++ +K+V T +++ S
Sbjct: 164 DEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNL 223
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
++G+ + D V + V +LI Y G ++ A ++F ++ KN + WN+++ G
Sbjct: 224 KLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICG 283
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y + EV++L EM N+KPD TV+ VLSACA +G+ G +H +A G+ +
Sbjct: 284 YCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIW-D 342
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
TALIDMYAKCG I + +VF + ++V WNA++ G A HG +A++L EM +
Sbjct: 343 VFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRE 402
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
S + D ITF+ +L AC+H+GLV+ G + F M + + + ++EHYGCMVDLLGRA LL
Sbjct: 403 SGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQ 462
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A ELI+ M EP + GALLSAC IH ++EIG+ A + K N + G ++ ANLY
Sbjct: 463 EARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMI-KLNAMDGGSYVILANLY 521
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
AS ++ R MM + GI K+ G S+IE+ H+F+ H
Sbjct: 522 ASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDVVHEFVVADKMH 567
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 33/310 (10%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H ++I + ++ T ++ + S C+D A +VF + E D +N+M+ A++S
Sbjct: 25 IHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSS--- 81
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS----------- 140
P ++ +N M + +G ++ ++F ++ V
Sbjct: 82 --------SQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVR 133
Query: 141 ---------WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
+SL+ Y GE+ A ++F + K+V+ WN ++TGY R + ++ +
Sbjct: 134 IGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGV 193
Query: 192 FDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVY-ATDNGLASNPHATTALIDMY 249
F EM + V+P+ T+ ++ AC +L+ G IH Y D L ALI++Y
Sbjct: 194 FKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLY 253
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
KCG ++ + ++F + K+ WN++I G G ++LL EM+ S +K D T
Sbjct: 254 VKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVS 313
Query: 310 GLLSACSHAG 319
G+LSAC+ G
Sbjct: 314 GVLSACAQMG 323
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 2/221 (0%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLS 212
++ A ++F + + +N M+ Y SQ + ++++M+A N+ D T V
Sbjct: 54 LDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFK 113
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
ACA+ ++E G +H G + ++L++ Y CG I + +VF + KDV
Sbjct: 114 ACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVF 173
Query: 273 WNAMILGLALHGYGYAALKLLGEMND-SCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WNA+I G A G + + EM + V+ ++ T +GL+ AC + ++ G + M
Sbjct: 174 WNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYM 233
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
KD + ++ +++L + LD A +L + +P + T
Sbjct: 234 MKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNT 274
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 108/262 (41%), Gaps = 43/262 (16%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+V +++ C N+ L+ +IH + + L+ T +I+ + ++ + +VF ++
Sbjct: 8 SVLALIETCTNIQQLK---QIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQT 64
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC--VKADDITFIGLLSACSHAGLVQE 323
Q D F +NAMI + A+ + +M +C + D T+ + AC+ V++
Sbjct: 65 QEPDGFIYNAMIRAYSSSQTPCVAISIYNKMR-ACQNILGDKYTYPFVFKACASQFAVEK 123
Query: 324 GCELFSRM-----EKDFGVTRKLEHYGCMVDLLGRAR----------------------- 355
G E+ + E D + L ++ + +G A+
Sbjct: 124 GKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYAR 183
Query: 356 ---LLDR---AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
+LD E++E P E + L+ AC+ ++L++G R K L +G
Sbjct: 184 QGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLG-RAIHGYMMKDMVLREG 242
Query: 410 ELMMFA--NLYASCGQWEEANR 429
+ A NLY CG + A +
Sbjct: 243 VKLEAALINLYVKCGYLDGARK 264
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 167/472 (35%), Positives = 258/472 (54%), Gaps = 11/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V D + ++ A L +G +HG IKTGF V V +L++M+ S+ C
Sbjct: 287 MREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGC 346
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI----SG 116
D+A VF KM KD+++W +M+ + G + A++ +M + V I I S
Sbjct: 347 WDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSA 406
Query: 117 YARIGKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + + + + S+ NSLI Y+ ++KA E+F ++ KNVI+W
Sbjct: 407 CAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISW 466
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ G + E + F +M ++KP+ +T+ SVLSACA +G+L G IH +A
Sbjct: 467 TSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALR 525
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
GL + AL+DMY +CG +E + F + KDV WN ++ G A G G A++L
Sbjct: 526 TGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVEL 584
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M +S V D+ITF LL ACS +G+V +G E F ME F + L+HY +VDLLG
Sbjct: 585 FHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLG 644
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L+ A E I+ MP +P +I GALL+AC I+Q++E+G+ A+ + + + S G +
Sbjct: 645 RAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHI-FEMDTKSVGYYI 703
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ NLYA G+W+E R R +M + + G S +EV G H FL G H
Sbjct: 704 LLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFH 755
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 17/380 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQEL V + ++ LL+ ++ G +H KT V + ALL M+
Sbjct: 85 MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGD 144
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMIS- 115
+ +A+ VF KM E+D+ +WN ++ +A G D A+ L M DV +F ++
Sbjct: 145 LVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRT 204
Query: 116 -------GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
R +H RY F+ DV N+LI Y G++ A +F +M ++
Sbjct: 205 CGGLPDLARGREVHLHVIRYGFES----DVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
I+WN M++GY + + +E + LF M+ V PD +T+TSV+SAC LG G +H
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y G + +LI M++ G +++ VF K + KD+ W AMI G +G
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK 380
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
A++ M V D+IT +LSAC+ GL+ +G L ++ G+T + ++
Sbjct: 381 AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRT-GLTSYVIVANSLI 439
Query: 349 DLLGRARLLDRAIELIEAMP 368
D+ + R +D+A+E+ +P
Sbjct: 440 DMYSKCRCIDKALEVFHRIP 459
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%)
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
D M+ V + T ++L C + G+R+H Y + AL+ M+ +
Sbjct: 82 LDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVR 141
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
G + ++ VF K +D+F WN ++ G A GY AL L M ++ D TF +
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCV 201
Query: 312 LSAC 315
L C
Sbjct: 202 LRTC 205
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 252/474 (53%), Gaps = 14/474 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ VH + ++F +LKA G S IG +HGQT K GF +V+VQ +L+ MY
Sbjct: 76 MQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQ 135
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
I A VF+K+ ++ +++W S++ + G A+ + M +V I +++
Sbjct: 136 ISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA 195
Query: 117 YARIGKIHSARYIFDKVPA------KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
Y + + + I V D+V SL Y G +E A F +M N+I
Sbjct: 196 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFFFNRMEKPNLI 253
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M++GY + E + LF EM N++ D +T+ S + A A +GSLE + Y
Sbjct: 254 LWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYI 313
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ + + T LIDMYAKCGSI + VF + KDV W+ MI+G LHG+G A+
Sbjct: 314 SKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAI 373
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L EM + V +D TFIGLL+AC ++GLV+EG ELF M D G+ +HY C+VDL
Sbjct: 374 CLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDL 432
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L++A + I +MP +P S+ GALLSAC IH+ + +G+ A+ + Y + G
Sbjct: 433 LGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPY-NTGH 491
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +NLYAS W R MM G+ K G S IE+NG+ F G H
Sbjct: 492 YVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSH 545
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 137/269 (50%), Gaps = 12/269 (4%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV--TSFNIMI---- 114
++ A K F ++ E DI+ WN+++ + +D +++ M + V F +
Sbjct: 35 VNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKA 94
Query: 115 ---SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ IGK IH + + +V NSL+ Y G++ A +F K+ + V+
Sbjct: 95 CGGTSVEGIGKQIHGQTFKYGF--GSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 152
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W ++++GY+++ +E +++F EM+ NVKPD++ + SV++A N+ L G IH
Sbjct: 153 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV 212
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
T GL P +L MYAK G +E + F + + ++ WNAMI G A +GYG A+
Sbjct: 213 TKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAI 272
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAG 319
KL EM ++ D IT + A + G
Sbjct: 273 KLFREMITKNIRVDSITMRSAVLASAQVG 301
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 144 LILAYTNA----GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
L++ + NA G++ A + F+++ +++ WN ++ GY + + + ++ +M+
Sbjct: 21 LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ 80
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V P+ T VL AC G +IH G SN +L+ MYAK G I +
Sbjct: 81 VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYAR 140
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
VF K + V W ++I G +G AL + EM VK D I + +++A ++
Sbjct: 141 IVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVE 200
Query: 320 LVQEG 324
+ +G
Sbjct: 201 DLGQG 205
>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 159/452 (35%), Positives = 255/452 (56%), Gaps = 4/452 (0%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ ++F +++A G L +G +HG +K G + AL++ Y IDDA +V
Sbjct: 270 PNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRV 329
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
+ + + A NS+++ S G+++ A + + M + S+N+MI GYA G++ ++
Sbjct: 330 CKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSK 389
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML-VKNVITWNTMVTGYLRSQLYI 186
+F+K+P + + S N++I Y+ GE++KA E+F++ K+ +TWN+M++GY+ S
Sbjct: 390 RLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPE 449
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E + L+ M +++ T +++ AC+ LGSL+ G +H + SN + T+LI
Sbjct: 450 EALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLI 509
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
DMY+KCGSI ++ F +V W A+I G A HG G A+ L M + + +
Sbjct: 510 DMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGA 569
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
TF+G+LSACS AGLV EG ++F ME+ + VT LEHY C+VDLLGR+ + A E I+
Sbjct: 570 TFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKK 629
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWE 425
MP E + GALLSAC DLE+G+RVA KM +S ++ +N+YA G+W
Sbjct: 630 MPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISS--YVILSNIYAGLGRWR 687
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
E R ++ + K G S IE+N H F
Sbjct: 688 EKMMVRKILRGFKVKKDPGCSWIELNNKIHVF 719
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 162/370 (43%), Gaps = 54/370 (14%)
Query: 55 YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------------------ 96
Y +D A ++F++MP++ +++WN+M+ +++ G+ A+
Sbjct: 82 YAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTF 141
Query: 97 ----------------KLIDLMPLKDVT-SFNIMISG----YARIGKIHSARYIFDKVPA 135
KLI + LK + SF ++ S YA +I AR +FD +
Sbjct: 142 SSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVR 201
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS----QLYIEVVDL 191
++ V W+ +++ Y M+ A +F KM ++V+ W T+++G+ ++ +E+ L
Sbjct: 202 RNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRL 261
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
M++G P+ T V+ AC LG L G +H GL +P AL++ Y +
Sbjct: 262 M--MRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCE 319
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
C +I+ +L V + N++I GL G A + M + + +++ +
Sbjct: 320 CEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE----MNPVSYNLM 375
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP 371
+ + G + + LF +M R + M+ + R +D+A+EL E E
Sbjct: 376 IKGYAVGGQMDDSKRLFEKMP-----CRTIFSSNTMISVYSRNGEIDKALELFEETKNEK 430
Query: 372 TESILGALLS 381
+++S
Sbjct: 431 DPVTWNSMIS 440
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 147/314 (46%), Gaps = 19/314 (6%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G ++H +K+G V +ALL Y S I +A +VF+ + ++ + W+ ML + +
Sbjct: 157 GKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVT 216
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK-IHSARYIFDKV-----PAKDVVSWN 142
C MD A+ + MP +DV ++ +ISG+++ G A +F + + +++
Sbjct: 217 CNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFD 276
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA--GNV 200
++ A G + G +L+K + ++ + G L + Y E + D ++ G V
Sbjct: 277 CVVRACGRLGIL-SVGRTVHGLLMKCGLEYDPSIGGAL-VEFYCECEAIDDALRVCKGVV 334
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NPHATTALIDMYAKCGSIEQSL 259
P + S++ ++G +E + NG+ NP + +I YA G ++ S
Sbjct: 335 NPCLNALNSLIEGLISMGRIEDAELVF-----NGMTEMNPVSYNLMIKGYAVGGQMDDSK 389
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F K + +F N MI + +G AL+L E + + D +T+ ++S H+G
Sbjct: 390 RLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKN---EKDPVTWNSMISGYIHSG 446
Query: 320 LVQEGCELFSRMEK 333
+E +L+ M +
Sbjct: 447 QPEEALKLYITMHR 460
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 120/284 (42%), Gaps = 45/284 (15%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
L ++ S NI IS YA+ K+ AR +FD++P + VVSWN++I +Y+ G
Sbjct: 69 LSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGR---------- 118
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
+ E + L M ++K T +SVLS CA L L G
Sbjct: 119 ---------------------FSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDG 157
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
IH +G S +AL+ YA C I ++ VF ++ W+ M++G
Sbjct: 158 KLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTC 217
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC----ELFSRMEKDFGVTR 339
AL + +M + D + + L+S S G +GC E+F M + T
Sbjct: 218 NVMDDALSVFVKMP----RRDVVAWTTLISGFSKNG---DGCGKALEMFRLMMRSGETTP 270
Query: 340 KLEHYGCMVDLLGRARLLD--RAIE-LIEAMPFEPTESILGALL 380
+ C+V GR +L R + L+ E SI GAL+
Sbjct: 271 NEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALV 314
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M L + +F L A L S G +LH IKT F +VYV T+L+ MY
Sbjct: 458 MHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGS 517
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
I +A F + ++ AW ++++ A G A+ L D M + + +F ++S
Sbjct: 518 IMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSA 577
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKM-LVKNVI 170
+R G ++ IF + V+ + ++ +G + +A E KKM L + +
Sbjct: 578 CSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGV 637
Query: 171 TWNTMVTG 178
W +++
Sbjct: 638 VWGALLSA 645
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 251/460 (54%), Gaps = 33/460 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ + D++SF ++KAA S G +H Q +K G H++V T L+ MYG
Sbjct: 264 MRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGE--- 320
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
CG + A K+ D MP ++ ++N +++ R
Sbjct: 321 ----------------------------CGCVGFARKVFDEMPQPNLVAWNAVVTACFRG 352
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR IFDK+ ++ SWN ++ Y AGE+E A +F +M ++ ++W+TM+ G+
Sbjct: 353 NDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFS 412
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + E F E+ ++P+ +++T VLSAC+ G+ E G +H + +G +
Sbjct: 413 HNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVS 472
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMY++CG++ + VF Q K + W +MI GLA+HG+G A+++ EM +S
Sbjct: 473 VNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTES 532
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V D+I+FI LL ACSHAGL++EG FS+M++ + + +EHYGCMVDL GR+ L +
Sbjct: 533 GVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQK 592
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A I MP PT + LL AC H ++E+ ++V K + + + G+L++ +N+YA
Sbjct: 593 AYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQV-KQRLNELDPNNSGDLVLLSNVYA 651
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ G+W++ R M I K S++EV + +KF A
Sbjct: 652 TAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTA 691
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 113/260 (43%), Gaps = 23/260 (8%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+NT+V GY S V +F EM + G + PD + V+ A AN SL TG ++H A
Sbjct: 240 FNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQA 299
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+GL S+ T LI MY +CG + + +VF + ++ WNA++ G +
Sbjct: 300 LKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTA-CFRGNDVSGA 358
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-----LEHYG 345
+ E+ D + + ++ +L+ AG ++ +FS M V+ H G
Sbjct: 359 R---EIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNG 415
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
+ R L RA P E L +LSAC E G + V KS Y
Sbjct: 416 SFNESFSYFRELLRA-------EMRPNEVSLTGVLSACSQSGAFEFGKTLHGFV-EKSGY 467
Query: 406 ---LSDGELMMFANLYASCG 422
+S ++ ++Y+ CG
Sbjct: 468 SWIVSVNNALI--DMYSRCG 485
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 130/291 (44%), Gaps = 30/291 (10%)
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
+ +A +L+ P D FN ++ GY+ + H++ +F ++ K + +S A+
Sbjct: 222 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAF--- 278
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV---------------DLFDEMK 196
+ KA F+ + + + G L S L++ +FDEM
Sbjct: 279 --VVKAAANFRSLRTGFQMHCQALKHG-LDSHLFVATTLIGMYGECGCVGFARKVFDEMP 335
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+P+ + +V++AC G+ +GAR ++ D L N + ++ Y K G +E
Sbjct: 336 ----QPNLVAWNAVVTACFR-GNDVSGAR-EIF--DKMLVRNHTSWNVMLAGYIKAGELE 387
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ +F + +D W+ MI+G + +G + E+ + ++ ++++ G+LSACS
Sbjct: 388 CAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACS 447
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+G + G L +EK G + + ++D+ R + A + E M
Sbjct: 448 QSGAFEFGKTLHGFVEKS-GYSWIVSVNNALIDMYSRCGNVPMARLVFEGM 497
>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
Length = 750
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 165/497 (33%), Positives = 248/497 (49%), Gaps = 73/497 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY--------- 55
GV + ++F LL+A +L +HGQ ++ GF V+VQ AL+ +Y
Sbjct: 106 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGG 165
Query: 56 ---GSLRCIDD------------------------AFKVFEKMPEKDIIAWNSMLDAFAS 88
+ + D+ A FE MPE+++++WN+++ FA
Sbjct: 166 GVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFAR 225
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
G M A + D MP ++ S+N+MISGYA G + +AR +FD++ KDVVSW +++ AY
Sbjct: 226 MGDMVTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAY 285
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTV 207
G+++ E+F M VKN+++WN M+TGY + Y E + F M G +PD T+
Sbjct: 286 AKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATL 345
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
SV+SACA LGS+E I + + + ALIDM+AKCG + ++ +FYK +
Sbjct: 346 VSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMET 405
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+ + W MI G A +G AL + M V+ DD FI L+AC+H GL+QEG +
Sbjct: 406 RCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSI 465
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F+ M + + + ++EHYGCMVDLLGRA L++ + I + EP S L+S C
Sbjct: 466 FNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL--EPFNSSYQVLVSNC---S 520
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
LE G+W+ R M + GI K GSS
Sbjct: 521 ALE-------------------------------GRWDGVIDARTSMRNWGIEKVPGSSS 549
Query: 448 IEVNGSYHKFLAGGIGH 464
I+V H+FLA H
Sbjct: 550 IQVGSEVHEFLAKDTRH 566
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 158/465 (33%), Positives = 257/465 (55%), Gaps = 10/465 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG AD + L A I G+ +H Q I++ + VQT+L+ MYG
Sbjct: 216 MLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGK 275
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ-MDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+D A +VF ++ K+I+AWN+M+ + + + +I+L+P + ++ G +
Sbjct: 276 VDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLLP--SCSQSGALLEGKS- 332
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
IH + K+ +V +L+ Y GE++ A +F +M KN+++WNTMV Y
Sbjct: 333 ---IHG--FAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAY 387
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++++ Y E + +F + +KPD +T+ SVL A A L S G +IH Y GL SN
Sbjct: 388 VQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNT 447
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ A++ MYAKCG ++ + E F KDV WN MI+ A+HG+G +++ EM
Sbjct: 448 FISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGK 507
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K + TF+ LL+ACS +GL+ EG F+ M+ ++G+ +EHYGCM+DLLGR LD
Sbjct: 508 GFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDE 567
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A IE MP PT I G+LL+A H D+ + + A+ + + + + G ++ +N+YA
Sbjct: 568 AKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILS-LKHDNTGCYVLLSNMYA 626
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+WE+ +R + +M + G+VKT G S++++NG F+ H
Sbjct: 627 EAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSH 671
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 163/341 (47%), Gaps = 23/341 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ +DN++FP ++KA G L + +G +HG+ IK GF VYV L+ MY +
Sbjct: 115 MECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGF 174
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ-MDHAMKLIDLMPLKDVTSFNIMISGYAR 119
I+ A KVF++MP +D+++WNSM+ + G + M +++ L + MIS
Sbjct: 175 IELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGA 234
Query: 120 IGKIHSAR-------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
H R + D++ SLI Y G+++ A +F ++ KN++ W
Sbjct: 235 CSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAW 294
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ G + V PD +T+ ++L +C+ G+L G IH +A
Sbjct: 295 NAMIGGM---------------QEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIR 339
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
TAL+DMY KCG ++ + VF + K++ WN M+ + ALK+
Sbjct: 340 KMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKM 399
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+ + +K D IT +L A + EG ++ S + K
Sbjct: 400 FQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMK 440
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 123/271 (45%), Gaps = 25/271 (9%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
+A +FEKM D WN ++ + + G A+ M + + S N +
Sbjct: 76 NALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACG 135
Query: 123 IHSARYIFDKVPAK--------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
A + KV K DV N LI Y G +E A ++F +M V+++++WN+
Sbjct: 136 ELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNS 195
Query: 175 MVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
MV+GY + + F EM + GN K D + S L AC+ L +G IH +
Sbjct: 196 MVSGYQIDGDGLSSLMCFKEMLRLGN-KADRFGMISALGACSIEHCLRSGMEIHCQVIRS 254
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
L + T+LIDMY KCG ++ + VF + K++ WNAMI G+
Sbjct: 255 ELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGM------------- 301
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
D V D IT I LL +CS +G + EG
Sbjct: 302 --QEDDKVIPDVITMINLLPSCSQSGALLEG 330
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 143/324 (44%), Gaps = 42/324 (12%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
+ +G M A +MF+KM + WN ++ GY + L+ E +D + M+ ++ D T
Sbjct: 67 GFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFT 126
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
V+ AC L +L G ++H G + + LIDMY K G IE + +VF +
Sbjct: 127 FPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMP 186
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
V+D+ WN+M+ G + G G ++L EM KAD I L ACS ++ G E
Sbjct: 187 VRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGME 246
Query: 327 LF-----SRMEKDFGVTRKLEHYGCMVDLLGRARLLD---RAIELIEAMPFEPTESILGA 378
+ S +E D V L +D+ G+ +D R I + +++G
Sbjct: 247 IHCQVIRSELELDIMVQTSL------IDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG 300
Query: 379 LLSACVIHQDLEIGDRVAKMV-----CAKSNYLSDGELM-------MF----------AN 416
+ +D ++ V M+ C++S L +G+ + MF +
Sbjct: 301 M------QEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVD 354
Query: 417 LYASCGQWEEANRWRNMMNDTGIV 440
+Y CG+ + A N MN+ +V
Sbjct: 355 MYGKCGELKLAEHVFNQMNEKNMV 378
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 256/431 (59%), Gaps = 13/431 (3%)
Query: 46 YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA-FASC--------GQMDHAM 96
+ TAL++ Y + A + M ++ + + A F++C G HA
Sbjct: 75 FAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQ 134
Query: 97 KLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
L+ D+ N +I Y + G + AR +FD++P +DV+SW LI+AYT G+M
Sbjct: 135 TLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRA 194
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A ++F + VK+++TW MVTGY ++ + ++ +++F ++ V+ D +T+ V+SACA
Sbjct: 195 ARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQ 254
Query: 217 LGSLETGARIHVYATDNG--LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
LG+ + I A +G + N +ALIDMY+KCG++E++ +VF + ++VF ++
Sbjct: 255 LGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYS 314
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+MI+G A+HG AA+KL +M ++ VK + +TF+G+L+ACSHAGLV +G +LF+ MEK
Sbjct: 315 SMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKC 374
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
+GV E Y CM DLL RA L++A++L+E MP E ++ GALL A +H + ++ +
Sbjct: 375 YGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEI 434
Query: 395 VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV-NGS 453
+K + + + G ++ +N YAS G+W++ ++ R ++ + + K G S +E NG
Sbjct: 435 ASKRLF-ELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGM 493
Query: 454 YHKFLAGGIGH 464
HKF+AG + H
Sbjct: 494 IHKFVAGDVSH 504
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 160/331 (48%), Gaps = 50/331 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMY---G 56
M++ V +++F L A + S +G LH QT+ G F +YV A++ MY G
Sbjct: 100 MRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCG 159
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
SLRC A VF++MPE+D+I+W ++ A+ G M A L D +P+KD+ ++ M++G
Sbjct: 160 SLRC---ARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTG 216
Query: 117 YARIGKIHSARYIF----------DKVPAKDVVS------------W------------- 141
YA+ A +F D+V V+S W
Sbjct: 217 YAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVG 276
Query: 142 ------NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
++LI Y+ G +E+A ++FK M +NV ++++M+ G+ + LF +M
Sbjct: 277 DNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDM 336
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGS 254
VKP+++T VL+AC++ G ++ G ++ G+A + D+ ++ G
Sbjct: 337 LETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGY 396
Query: 255 IEQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
+E++L++ ++ D W A++ +HG
Sbjct: 397 LEKALQLVETMPMESDGAVWGALLGASHVHG 427
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 32/192 (16%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F ++ N W ++ Y + + + M+ V P T +++ SACA +
Sbjct: 65 LFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRH 124
Query: 220 LETGARIHVYA-TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS------------- 265
GA++H G +S+ + A+IDMY KCGS+ + VF +
Sbjct: 125 SALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIV 184
Query: 266 ------------------QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
VKD+ W AM+ G A + AL++ + D V+ D++T
Sbjct: 185 AYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVT 244
Query: 308 FIGLLSACSHAG 319
+G++SAC+ G
Sbjct: 245 LVGVISACAQLG 256
>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
Length = 557
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 228/384 (59%), Gaps = 1/384 (0%)
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
+++D + S G++ A ++ D MP +V N M++ Y R G + + R +FD++ +D +S
Sbjct: 157 ALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMVACYVRAGDVEAGRDVFDRMAERDPIS 216
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
WN+L++ Y GE A ++F++M +NV +WN ++ + L+ + V++F+ M+
Sbjct: 217 WNTLMMGYLRQGEAGVARDLFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARF 276
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD T+ ++SACA LGSL +++H + N H +LIDMYAKCGS+ Q+
Sbjct: 277 QPDPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHL 336
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F ++++KD +N MI LA HG+G AL++ EM++ ++ D +TF+G+LSAC+HAGL
Sbjct: 337 LFVETRLKDTVSYNVMICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGL 396
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V +G F M ++ + + +HY CMVDL GRA L++ A +L AMP +P + GAL+
Sbjct: 397 VHDGKFYFESMRTNYAIEQSPDHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALI 456
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+AC H ++E+G A+ + A + G ++ AN A QW+ M GI
Sbjct: 457 NACRKHCNVEVGKVAARELIAIEPG-NPGTYVLLANTLARGQQWDFVETVWQSMRGKGIE 515
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
KTAG S +EV+ H+FL G H
Sbjct: 516 KTAGCSWLEVDRVVHEFLMGESSH 539
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 12/225 (5%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYAR 119
A +FE+MP++++ +WN ++ A + G A+++ + M L D + +++S A+
Sbjct: 233 ARDLFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQ 292
Query: 120 IGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
+G + A + + K V NSLI Y G + +A +F + +K+ +++N
Sbjct: 293 LGSLSIASQVHG-ILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNV 351
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA-RIHVYATDN 233
M+ + + + +FDEM ++PD +T VLSACA+ G + G T+
Sbjct: 352 MICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNY 411
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMI 277
+ +P ++D+Y + G IE++ ++ VK W A+I
Sbjct: 412 AIEQSPDHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALI 456
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 116/302 (38%), Gaps = 80/302 (26%)
Query: 167 KNVITWNTMVTGYLR---SQLYIE--VVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSL 220
+NV W + Y R S L + LF M + G +P+ T +SV+ C+ L ++
Sbjct: 74 ENVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALRAV 133
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYA------------------------------ 250
G ++H + GL H AL+DMY
Sbjct: 134 REGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMVACY 193
Query: 251 -KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
+ G +E +VF + +D WN +++G G A L EM D V + ++
Sbjct: 194 VRAGDVEAGRDVFDRMAERDPISWNTLMMGYLRQGEAGVARDLFEEMPDRNVNSWNM--- 250
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF 369
+++ACS GL + E+F+RM L R F
Sbjct: 251 -VIAACSQEGLWADAVEVFNRMR------------------LAR---------------F 276
Query: 370 EPTESILGALLSACVIHQDLEIGDRVAKMV---CAKSNYLSDGELMMFANLYASCGQWEE 426
+P + + L+SAC L I +V ++ C + N+ L+ ++YA CG +
Sbjct: 277 QPDPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMNFHVLNSLI---DMYAKCGSVSQ 333
Query: 427 AN 428
A+
Sbjct: 334 AH 335
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 25/182 (13%)
Query: 53 KMYGSLR--CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
+++G LR C++ F V NS++D +A CG + A L LKD S+
Sbjct: 301 QVHGILRKGCVEMNFHVL-----------NSLIDMYAKCGSVSQAHLLFVETRLKDTVSY 349
Query: 111 NIMISGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
N+MI A+ G A IFD++ + D V++ ++ A +AG + F+ M
Sbjct: 350 NVMICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRT 409
Query: 167 KNVIT-----WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
I + MV Y R+ L E L M VKP ++++AC ++E
Sbjct: 410 NYAIEQSPDHYACMVDLYGRAGLIEEAYQLARAMP---VKPHAGVWGALINACRKHCNVE 466
Query: 222 TG 223
G
Sbjct: 467 VG 468
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 11/192 (5%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D + +L+ A L S I +HG K + +V +L+ MY + A
Sbjct: 277 QPDPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHL 336
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGK 122
+F + KD +++N M+ A A G A+++ D M D +F ++S A G
Sbjct: 337 LFVETRLKDTVSYNVMICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGL 396
Query: 123 IHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMV 176
+H ++ F+ + + + ++ Y AG +E+A ++ + M VK + W ++
Sbjct: 397 VHDGKFYFESMRTNYAIEQSPDHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALI 456
Query: 177 TGYLRSQLYIEV 188
R +EV
Sbjct: 457 NA-CRKHCNVEV 467
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 148/487 (30%), Positives = 266/487 (54%), Gaps = 46/487 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ DN +FP +LKA +++ G +H K G ++V +L+ +Y + + A
Sbjct: 82 GMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYA 141
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK------------------- 105
VF++M KD+++WNS++ ++ C + + L LM +
Sbjct: 142 RSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRL 201
Query: 106 --------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
DV N ++ + R G++ SA +F + +++V+ N++I
Sbjct: 202 GDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMI 261
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
AY ++ A ++F ++ K++I+W++M++GY ++ + + +++F +M+ VKPD +
Sbjct: 262 AAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAI 321
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ SV+S+CA+LG+L+ G +H Y N + ++ +LIDMY KCGS +++L+VF +
Sbjct: 322 VIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEM 381
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ KD WN++I+GLA +G+ +L L M + + +TF+G+L AC++A LV+EG
Sbjct: 382 KEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGL 441
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
+ F M++ + + +++HYGC+VDLLGRA L++A+ I MP +P + LL +C
Sbjct: 442 DHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNT 501
Query: 386 HQDLEIGDRVAKMVCAKSNYL---SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
H D+ I A++V K N L + G + +N YAS +W EA R M DT + K+
Sbjct: 502 HGDVAI----AEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKS 557
Query: 443 AGSSVIE 449
G S +E
Sbjct: 558 PGCSAVE 564
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 6/245 (2%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A ++F ++ WN ++ G +S + + + + + G + PD LT +L ACA
Sbjct: 40 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 99
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
+ +L G ++H + T GL S+ + +LI +YA CG++ + VF + VKDV WN++
Sbjct: 100 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 159
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I G + L L M + VKAD +T I ++SAC+ G + R +D+
Sbjct: 160 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA-DYMVRYIEDYC 218
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL----EIG 392
+ + +VD GR L A ++ M + + A+++A QD+ +I
Sbjct: 219 IEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVT-MNAMIAAYAKGQDIVSARKIF 277
Query: 393 DRVAK 397
D++ K
Sbjct: 278 DQIPK 282
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D ++ + L + +G +H + ++ +L+ MY
Sbjct: 311 MQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGS 370
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
+A +VF++M EKD ++WNS++ A+ G ++ L M
Sbjct: 371 AKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAM 412
>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 159/452 (35%), Positives = 254/452 (56%), Gaps = 4/452 (0%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ ++F +++A G L +G +HG +K G + AL++ Y IDDA +V
Sbjct: 230 PNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRV 289
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
+ + + A NS+++ S G+++ A + + M + S+N+MI GYA G++ ++
Sbjct: 290 CKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSK 349
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML-VKNVITWNTMVTGYLRSQLYI 186
+F+K+P + + S N++I Y+ GE++KA E+F++ K+ +TWN+M++GY+ S
Sbjct: 350 RLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPE 409
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E + L+ M +++ T +++ AC+ LGSL G +H + SN + T+LI
Sbjct: 410 EALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLI 469
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
DMY+KCGSI ++ F +V W A+I G A HG G A+ L M + + +
Sbjct: 470 DMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGA 529
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
TF+G+LSACS AGLV EG ++F ME+ + VT LEHY C+VDLLGR+ + A E I+
Sbjct: 530 TFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKK 589
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWE 425
MP E + GALLSAC DLE+G+RVA KM +S ++ +N+YA G+W
Sbjct: 590 MPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISS--YVILSNIYAGLGRWR 647
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
E R ++ + K G S IE+N H F
Sbjct: 648 EKMMVRKILRGFKVKKDPGCSWIELNNKIHVF 679
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 162/370 (43%), Gaps = 54/370 (14%)
Query: 55 YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------------------ 96
Y +D A ++F++MP++ +++WN+M+ +++ G+ A+
Sbjct: 42 YAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTF 101
Query: 97 ----------------KLIDLMPLKDVT-SFNIMISG----YARIGKIHSARYIFDKVPA 135
KLI + LK + SF ++ S YA +I AR +FD +
Sbjct: 102 SSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVR 161
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS----QLYIEVVDL 191
++ V W+ +++ Y M+ A +F KM ++V+ W T+++G+ ++ +E+ L
Sbjct: 162 RNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRL 221
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
M++G P+ T V+ AC LG L G +H GL +P AL++ Y +
Sbjct: 222 M--MRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCE 279
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
C +I+ +L V + N++I GL G A + M + + +++ +
Sbjct: 280 CEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE----MNPVSYNLM 335
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP 371
+ + G + + LF +M R + M+ + R +D+A+EL E E
Sbjct: 336 IKGYAVGGQMDDSKRLFEKMP-----CRTIFSSNTMISVYSRNGEIDKALELFEETKNEK 390
Query: 372 TESILGALLS 381
+++S
Sbjct: 391 DPVTWNSMIS 400
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 147/314 (46%), Gaps = 19/314 (6%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G ++H +K+G V +ALL Y S I +A +VF+ + ++ + W+ ML + +
Sbjct: 117 GKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVT 176
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK-IHSARYIFDKV-----PAKDVVSWN 142
C MD A+ + MP +DV ++ +ISG+++ G A IF + + +++
Sbjct: 177 CNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFD 236
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA--GNV 200
++ A G + G +L+K + ++ + G L + Y E + D ++ G V
Sbjct: 237 CVVRACGRLGIL-SVGRTVHGLLMKCGLEYDPSIGGAL-VEFYCECEAIDDALRVCKGVV 294
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NPHATTALIDMYAKCGSIEQSL 259
P + S++ ++G +E + NG+ NP + +I YA G ++ S
Sbjct: 295 NPCLNALNSLIEGLISMGRIEDAELVF-----NGMTEMNPVSYNLMIKGYAVGGQMDDSK 349
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F K + +F N MI + +G AL+L E + + D +T+ ++S H+G
Sbjct: 350 RLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKN---EKDPVTWNSMISGYIHSG 406
Query: 320 LVQEGCELFSRMEK 333
+E +L+ M +
Sbjct: 407 QPEEALKLYITMHR 420
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 120/284 (42%), Gaps = 45/284 (15%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
L ++ S NI IS YA+ K+ AR +FD++P + VVSWN++I +Y+ G
Sbjct: 29 LSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGR---------- 78
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
+ E + L M ++K T +SVLS CA L L G
Sbjct: 79 ---------------------FSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDG 117
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
IH +G S +AL+ YA C I ++ VF ++ W+ M++G
Sbjct: 118 KLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTC 177
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC----ELFSRMEKDFGVTR 339
AL + +M + D + + L+S S G +GC E+F M + T
Sbjct: 178 NVMDDALSVFVKMP----RRDVVAWTTLISGFSKNG---DGCGKALEIFRLMMRSGETTP 230
Query: 340 KLEHYGCMVDLLGRARLLD--RAIE-LIEAMPFEPTESILGALL 380
+ C+V GR +L R + L+ E SI GAL+
Sbjct: 231 NEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALV 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M L + +F L A L S G +LH IKT F +VYV T+L+ MY
Sbjct: 418 MHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGS 477
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
I +A F + ++ AW ++++ A G A+ L D M + + +F ++S
Sbjct: 478 IMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSA 537
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKM-LVKNVI 170
+R G ++ IF + V+ + ++ +G + +A E KKM L + +
Sbjct: 538 CSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGV 597
Query: 171 TWNTMVTG 178
W +++
Sbjct: 598 VWGALLSA 605
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 244/467 (52%), Gaps = 9/467 (1%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D+Y+F + LKA + G +H Q +K GF +V L MY ++
Sbjct: 213 VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGL 272
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARIG 121
+FEKM +D+++W +++ GQ + A++ M DV+ +F +ISG A +
Sbjct: 273 TLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLA 332
Query: 122 KIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+I + + A + NS++ Y G++ + +F +M +++++W+T++
Sbjct: 333 RIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY + E +L M+ KP + SVLSAC N+ LE G ++H Y GL
Sbjct: 393 GYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ALI+MY KCGSIE++ +F ++ D+ W AMI G A HGY + L ++
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
++ D +TFIG+LSACSHAGLV G F+ M K + ++ EHYGCM+DLL RA L
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
A +IEAMPF + + LL AC +H D+E G R A+ + + G + AN+
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCA-GTHITLANI 631
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YAS G+W EA R +M G++K G S I+V F+AG H
Sbjct: 632 YASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSH 678
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 165/333 (49%), Gaps = 8/333 (2%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E G+ D + L KA G+ S G +LHG +KTG V+V +ALL MY I
Sbjct: 109 ESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIF 168
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYA 118
+ +VF +MP +++++W +++ G A+ M D +F I + A
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228
Query: 119 RIGKIHSARYIFDKVPAK--DVVSW--NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
G ++ R I + K DV S+ N+L Y G++E +F+KM +++V++W T
Sbjct: 229 DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTT 288
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++T ++ V F M+ +V P+ T +V+S CANL +E G ++H G
Sbjct: 289 IITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLG 348
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
LA++ +++ MYAKCG + S +F++ +D+ W+ +I G G+ A +LL
Sbjct: 349 LAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLS 408
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
M K + +LSAC + +++ G +L
Sbjct: 409 WMRMEGPKPTEFALASVLSACGNMAILEHGKQL 441
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 117/491 (23%), Positives = 198/491 (40%), Gaps = 83/491 (16%)
Query: 16 LLKAAGILSSSCIGL-MLHGQTIKTGFCGHVYVQTALLKMYGSLR------CIDDAFKVF 68
L A + S+ CI L +L H QT L + L+ + +A ++F
Sbjct: 13 LFTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMF 72
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--------------------LKDVT 108
+KM +KD I+W +++ + + A+ L M L
Sbjct: 73 DKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDV 132
Query: 109 SFNIMISGYA-RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
++ ++ GYA + G ++S V ++L+ YT G++ + +F +M ++
Sbjct: 133 NYGELLHGYAVKTGLVNS------------VFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
NV++W ++TG +R+ E + F EM V+ D T L ACA+ G+L G IH
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
A G + L MY KCG +E L +F K ++DV W +I L G
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL-------------------- 327
A++ M +S V ++ TF ++S C++ ++ G +L
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360
Query: 328 ---------------FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE-- 370
F M + R + + ++ + + A EL+ M E
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTR-----RDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGP 415
Query: 371 -PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
PTE L ++LSAC LE G ++ V + + L N+Y CG EEA+R
Sbjct: 416 KPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASR 475
Query: 430 WRNMMNDTGIV 440
+ + IV
Sbjct: 476 IFDAAENDDIV 486
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 133/294 (45%), Gaps = 10/294 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V + Y+F ++ L+ G LH + G + V+ +++ MY
Sbjct: 309 MRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQ 368
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNI--MISG 116
+ + +F +M +DI++W++++ + G + A +L+ M ++ T F + ++S
Sbjct: 369 LTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 428
Query: 117 YARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ + + Y+ + ++LI Y G +E+A +F ++++W
Sbjct: 429 CGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSW 488
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYAT 231
M+ GY EV+DLF+++ ++PD +T VLSAC++ G ++ G + +
Sbjct: 489 TAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSK 548
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHG 284
++ + +ID+ + G + + + +D W+ ++ +HG
Sbjct: 549 KYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 602
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 238/416 (57%), Gaps = 4/416 (0%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
LL M +D A ++F +MPE+D++AW +M+D A G +D A L D MP ++V S+
Sbjct: 171 LLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSW 230
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N MISGY R ++ A +F K+P +D+ S N +I + ++++A ++F +M +NV+
Sbjct: 231 NAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVV 290
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TW TM+ GYL+ + + LF M ++P+ +T L AC++L +L G ++H
Sbjct: 291 TWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMI 350
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ +AL+++YAKCG + + ++F S+ KD+ WN +I A HG G A+
Sbjct: 351 CKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAI 410
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M + + +D+T++ LLSACSH+GLV EG ++F M D + + EHY C++DL
Sbjct: 411 HLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDL 470
Query: 351 LGRARLLDRAIELIEAMPFEPTE-SILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSD 408
RA LD A LI + +P S+ ALL C H + IG+ A+ ++ A+ + +
Sbjct: 471 CSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPD--NA 528
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G + +N+YAS G+W+EA R+ MN+ G+ K G S IEV H F+A H
Sbjct: 529 GTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSH 584
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/427 (24%), Positives = 190/427 (44%), Gaps = 87/427 (20%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V TALL Y +D+A +F++MP++++++WN+ML+A+A G+ A L D MP
Sbjct: 102 NVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMP 161
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++D S+NI+++ R G + AR +F ++P +DV++W +++ +G +++A +F
Sbjct: 162 VRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDS 221
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +NV++WN M++GY R+ E +DLF +M
Sbjct: 222 MPERNVVSWNAMISGYTRNHRLDEALDLFTKM---------------------------- 253
Query: 224 ARIHVYATDNGLASNPHATTA----LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
PH A +I + + ++++ ++F + ++V W M+ G
Sbjct: 254 ---------------PHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNG 298
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK------ 333
+L L M S ++ + +TF+G L ACS + EG ++ + K
Sbjct: 299 YLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVD 358
Query: 334 ---------------DFGVTRKLEHYGCMVDLLGRARLLD---------RAIELIEAMP- 368
+ G+ RKL DL+ ++ AI L E M
Sbjct: 359 TFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQG 418
Query: 369 --FEPTESILGALLSAC----VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
+ P + LLSAC ++ + L+I + MV +S + D +L + G
Sbjct: 419 NGYRPNDVTYVVLLSACSHSGLVDEGLKIFE---SMVNDRSIAVRDEHYTCLIDLCSRAG 475
Query: 423 QWEEANR 429
+ ++A R
Sbjct: 476 RLDDAKR 482
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 166/351 (47%), Gaps = 27/351 (7%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA-KDV 138
N ++ A+ G++ A KL D P +DV S+ ++S YAR G + AR +FD+ A ++V
Sbjct: 44 NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNV 103
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
V+W +L+ Y AG +++A +F++M +NV++WNTM+ Y + + LFD M
Sbjct: 104 VTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPV- 162
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
D + +L+ GS++ + + + A T ++D A+ G+++++
Sbjct: 163 ---RDAGSWNILLAMLVRSGSVDKARELFGRMPERDVM----AWTTMVDGVARSGNVDEA 215
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+F ++V WNAMI G + AL L +M + + +I G +
Sbjct: 216 RLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKD-- 273
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESI 375
++ +LF M + R + + M++ + + + ++ L M P +
Sbjct: 274 --LKRARKLFDEMPE-----RNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVT 326
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD---GELMMFANLYASCGQ 423
L AC L G +V +M+C K+ + D G +M N+YA CG+
Sbjct: 327 FLGALDACSDLATLCEGKQVHQMIC-KTAFQVDTFVGSALM--NVYAKCGE 374
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 16/248 (6%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + +F L A L++ C G +H KT F +V +AL+ +Y + A
Sbjct: 319 GIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLA 378
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNIMISGYAR 119
K+F+ EKD+I+WN ++ A+A G A+ L + M DVT + +++S +
Sbjct: 379 RKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVT-YVVLLSACSH 437
Query: 120 IGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV--ITW 172
G + IF D+ A + LI + AG ++ A + + +K W
Sbjct: 438 SGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVW 497
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-ANLGSLETGARIHVYAT 231
+ ++ G + E + +PD ++LS A+ G + A I
Sbjct: 498 SALLGGC--NAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMN 555
Query: 232 DNGLASNP 239
+ GL P
Sbjct: 556 NRGLKKQP 563
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 210/346 (60%), Gaps = 3/346 (0%)
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+G + + A D ++N+LI AY AG + A +F +M +N ++W+ MV GY
Sbjct: 125 LGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGY 184
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+++ E + +F M+A +V+PD + VL+ACA G+LE G +H Y +G+ N
Sbjct: 185 VQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINL 244
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TAL+DMY+KCG ++ +++VF + Q K+V W MI GLA+HG G A+ L +M S
Sbjct: 245 FFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESS 304
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
++ DDI FIG+L AC+HAGLV +G ELF M + +G+ K+EHYGCMVDLL R L
Sbjct: 305 GIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYE 364
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM-VCAKSNYLSDGELMMFANLY 418
A E+I+ MP EP I GAL++ C H+++E + VAK + + + G ++ +N+Y
Sbjct: 365 AKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPD--KSGAYVLLSNIY 422
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
A+ G+ A R++M + G+ KT G S +EVNG H+F+ G + H
Sbjct: 423 AASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSH 468
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 143/325 (44%), Gaps = 46/325 (14%)
Query: 5 GVHADNYSFPLLLKA----AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY-GSLR 59
G+ ++ P LLK+ + ++ + L +H +K G V V AL++++ G L
Sbjct: 67 GLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLG 126
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ D + D +N+++ A+A G++ A L D MP ++ S++ M++GY +
Sbjct: 127 SLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQ 186
Query: 120 IGKIHSARYIFDKVPAKDVVS----------------------W---------------- 141
G A IF ++ A+DV W
Sbjct: 187 AGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFF 246
Query: 142 -NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+L+ Y+ GE++ A ++F++M KNV+ W TM+ G E V LF +M++ +
Sbjct: 247 GTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGI 306
Query: 201 KPDYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+PD + VL AC + G ++ G + G+ ++D+ A+ G + ++
Sbjct: 307 RPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAK 366
Query: 260 EVFYKSQVK-DVFCWNAMILGLALH 283
E+ K ++ D W A++ G H
Sbjct: 367 EMIQKMPMEPDALIWGALMAGCRFH 391
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 253/468 (54%), Gaps = 9/468 (1%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+ + +L L +G+ + +K GF H YV T L +Y I+ A
Sbjct: 202 GIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETA 261
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID--LMPLKDVTSFNI--MISGYARI 120
+F ++ + D++++N+M+ + + + +++L L+ + V S +I +I +
Sbjct: 262 RLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPF 321
Query: 121 GKIHSARYIF----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
G +H R I + +L Y+ E+E A +F + K++ +WN M+
Sbjct: 322 GHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMI 381
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+GY ++ L + + LF EM+ V+P+ +TVTS+LSACA LG+L G +H
Sbjct: 382 SGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFE 441
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
SN +TALIDMYAKCGSI ++ +F K+ WNAMI G LHGYG+ AL L EM
Sbjct: 442 SNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEM 501
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
S V +TF+ +L ACSHAGLV+EG E+F M D G EHY CMVDLLGRA
Sbjct: 502 LHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGN 561
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
LD+A++ I MP EP + GALL AC+IH+D + R+A + + + G ++ +N
Sbjct: 562 LDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLA-RLASDKLFELDPQNVGYYVLLSN 620
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+Y++ + EA R ++ + KT G ++IEV + H F +G H
Sbjct: 621 IYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSH 668
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 110/451 (24%), Positives = 188/451 (41%), Gaps = 47/451 (10%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA----- 87
H Q I G + T L L+ ID A +F +P D+ +N ++ AF+
Sbjct: 30 HAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSP 89
Query: 88 --SCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
+ H K L P +F I + +G + A I D+ ++++
Sbjct: 90 SSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGF-GSDLFVGSAIV 148
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y + A ++F ML ++ + WNTMV+G +++ + E + +F +M G + D
Sbjct: 149 ACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDST 208
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
TV +VL A L L G I A G S+ + T L +Y+KCG IE + +F +
Sbjct: 209 TVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQI 268
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL-----------LSA 314
D+ +NAMI G + ++++L E+ S K + + +GL L+
Sbjct: 269 GQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTR 328
Query: 315 CSHAGLVQEG-----------CELFSRMEK--------DFGVTRKLEHYGCMVDLLGRAR 355
C H + G ++SR+ + D + L + M+ +
Sbjct: 329 CIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNG 388
Query: 356 LLDRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKMV---CAKSNYLSDG 409
L ++AI L + M P + ++LSAC L +G V ++ +SN
Sbjct: 389 LTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVST 448
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
L+ ++YA CG EA R +MM + V
Sbjct: 449 ALI---DMYAKCGSITEAQRLFSMMPEKNAV 476
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 166/395 (42%), Gaps = 82/395 (20%)
Query: 36 TIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA 95
+I GF ++V +A++ Y + A KVF+ M E+D + WN+M+ D A
Sbjct: 132 SIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEA 191
Query: 96 MKLID----------------LMP----LKDVT---------------SFNIMISG---- 116
+ + ++P L+D+ S +I+G
Sbjct: 192 ILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACL 251
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y++ G+I +AR +F ++ D+VS+N++I YT E E + +FK++LV ++ +
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSI 311
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G + P + G L IH + T +G+
Sbjct: 312 VGLI---------------------PVFFP----------FGHLHLTRCIHGFCTKSGVV 340
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
SN +TAL +Y++ IE + +F +S K + WNAMI G A +G A+ L EM
Sbjct: 341 SNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEM 400
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEG---CELFSR--MEKDFGVTRKLEHYGCMVDLL 351
V+ + +T +LSAC+ G + G +L +R E + V+ L +D+
Sbjct: 401 QKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTAL------IDMY 454
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+ + A L MP E A++S +H
Sbjct: 455 AKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLH 488
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 35/169 (20%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ V + + +L A L + +G +H + F +++V TAL+ MY
Sbjct: 400 MQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGS 459
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I +A ++F MPEK+ + WN+ MISGY
Sbjct: 460 ITEAQRLFSMMPEKNAVTWNA-------------------------------MISGYGLH 488
Query: 121 GKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKML 165
G H A +F+++ V V++ S++ A ++AG + + E+F+ M+
Sbjct: 489 GYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMV 537
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 169/502 (33%), Positives = 255/502 (50%), Gaps = 48/502 (9%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
+ YSF L A L +G +H K+ + VY+ +AL+ MY + A +VF
Sbjct: 146 NEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVF 205
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSF-------- 110
M E++++ WNS++ + G A+++ D + L V S
Sbjct: 206 SGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALK 265
Query: 111 ----------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
N ++ YA+ K++ AR +FD++ ++VVS S++ Y
Sbjct: 266 EGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY 325
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
A ++ A MF KM +NV++WN ++ GY ++ E + LF +K ++ P + T
Sbjct: 326 ARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFG 385
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATT------ALIDMYAKCGSIEQSLEVF 262
++LSACANL L G + H + G A + +LIDMY KCGSIE VF
Sbjct: 386 NLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVF 445
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
K + +D WNA+I+G A +GYG AL++ +M K D +T IG+L ACSHAGLV+
Sbjct: 446 EKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVE 505
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EG F ME + G+ +HY CMVDLLGRA L+ A LIEAMP P + G+LL+A
Sbjct: 506 EGRHYFFSME-EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAA 564
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C +H ++E+G A+ + + S G ++ +N+YA G+W + R R +M G+ K
Sbjct: 565 CKVHGNIEMGKHAAEKLLEIDPWNS-GPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQ 623
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
G S IEV H FL H
Sbjct: 624 PGCSWIEVESRVHVFLVKDKSH 645
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/456 (25%), Positives = 202/456 (44%), Gaps = 83/456 (18%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
++H + + T F +++Q L+ +YG C+DDA K+F++MP+++ WNS++ G
Sbjct: 36 LVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSG 95
Query: 91 QMDHAMKLIDLMPLKDVTSFNIMISGYAR----------IGKIHSARYIFDKVP------ 134
+D A +L MP D S+N M+SG+A+ K+H ++ ++
Sbjct: 96 FLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALS 155
Query: 135 -----------------------AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ DV ++LI Y+ G + A E+F M+ +N++T
Sbjct: 156 ACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVT 215
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN+++T Y ++ E +++F M ++PD +T+ SV+SACA+L +L+ G +IH
Sbjct: 216 WNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVV 275
Query: 232 D-NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
N + AL+DMYAKC + ++ VF + +++V +M+ G A AA
Sbjct: 276 KTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAAR 335
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ +M V +++ L++ + G +E LF
Sbjct: 336 FMFSKMTQRNV----VSWNALIAGYTQNGENEEALRLF---------------------- 369
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS-NYLSDG 409
RLL R PT G LLSAC DL +G + V + + S
Sbjct: 370 ----RLLKRE-------SIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGA 418
Query: 410 ELMMFA-----NLYASCGQWEEANRWRNMMNDTGIV 440
E +F ++Y CG E+ +R M + V
Sbjct: 419 ESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCV 454
>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 705
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 231/404 (57%), Gaps = 2/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D+A ++F++M E+ +I W +M+ + ++D A K+ D+MP K S+ M+ GY +
Sbjct: 188 VDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQN 247
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+I A +F+ +P K V++ N++I GE+ KA +F M +N +W T++ +
Sbjct: 248 GRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHE 307
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R+ +E +DLF M+ V+P + T+ S+LS CA+L SL G ++H + +
Sbjct: 308 RNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVY 367
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS- 299
+ L+ MY KCG + +S +F + KD+ WN++I G A HG G ALK+ EM S
Sbjct: 368 VASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSG 427
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K +++TF+ LSACS+AG+V+EG +++ ME FGV HY CMVD+LGRA +
Sbjct: 428 STKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNE 487
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A+E+I++M EP ++ G+LL AC H L++ + AK + S G ++ +N+YA
Sbjct: 488 AMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENS-GTYILLSNMYA 546
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIG 463
S G+W + R +M + K+ G S EV H F GGI
Sbjct: 547 SQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGIN 590
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 140/271 (51%), Gaps = 12/271 (4%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
DA K+F++MP+++II+WN ++ + G++D A K+ DLMP ++V S+ ++ GY GK
Sbjct: 66 DARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGK 125
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ A +F K+P K+ VSW +++ + G ++ A ++++ + K+ I +M+ G +
Sbjct: 126 VDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKE 185
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E ++FDEM +V +T T++++ ++ +I + S
Sbjct: 186 GRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVS----W 237
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
T+++ Y + G IE + E+F VK V NAMI GL G A ++ DS +
Sbjct: 238 TSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVF----DSMKE 293
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+D ++ ++ G E +LF M+K
Sbjct: 294 RNDASWQTVIKIHERNGFELEALDLFILMQK 324
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 120/252 (47%), Gaps = 12/252 (4%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N + + G++ A KL D K ++S+N M++GY AR +FD++P ++++
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
SWN L+ Y GE+++A ++F M +NV++W +V GY+ + LF +M N
Sbjct: 81 SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKN 140
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
++ T +L G ++ +++ D + A T++I K G ++++
Sbjct: 141 ----KVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAR 192
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
E+F + + V W M+ G + A K+ M + ++++ +L G
Sbjct: 193 EIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKT----EVSWTSMLMGYVQNG 248
Query: 320 LVQEGCELFSRM 331
+++ ELF M
Sbjct: 249 RIEDAEELFEVM 260
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 19/217 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGI---LSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS 57
MQ+ GV +FP L+ + L+S G +H Q ++ F VYV + L+ MY
Sbjct: 322 MQKQGVRP---TFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT-----SFNI 112
+ + +F++ P KDII WNS++ +AS G + A+K+ MPL T +F
Sbjct: 379 CGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVA 438
Query: 113 MISGYARIGKIHSARYIFDKVPA----KDVVS-WNSLILAYTNAGEMEKAGEMFKKMLVK 167
+S + G + I++ + + K + + + ++ AG +A EM M V+
Sbjct: 439 TLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVE 498
Query: 168 -NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+ W +++ G R+ ++V + F K ++P+
Sbjct: 499 PDAAVWGSLL-GACRTHSQLDVAE-FCAKKLIEIEPE 533
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 160/475 (33%), Positives = 258/475 (54%), Gaps = 13/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ D Y+ +L + L + G +H TIK YV +L+ MY C
Sbjct: 341 MSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDC 400
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCG---QMDHAMKLIDLMPLK----DVTSFNIM 113
+ DA KVF+ D++ +N+M++ ++ G ++ A+ + M + + +F +
Sbjct: 401 LTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSL 460
Query: 114 ISGYARIGKIHSARYI----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ A + + ++ I F D+ + ++LI Y+N ++ + +F +M VK++
Sbjct: 461 LRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+ WN+M GY++ E ++LF E++ +PD T ++++A NL S++ G H
Sbjct: 521 VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQ 580
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
GL NP+ T AL+DMYAKCGS E + + F + +DV CWN++I A HG G A
Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKA 640
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L++L +M ++ + ITF+G+LSACSHAGLV++G + F M + FG+ + EHY CMV
Sbjct: 641 LQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVS 699
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA L++A ELIE MP +P + +LLS C ++E+ + A+M S+ G
Sbjct: 700 LLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAIL-SDPKDSG 758
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M +N+YAS G W EA + R M G+VK G S I +N H FL+ H
Sbjct: 759 SFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSH 813
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +K+GF VYV T L+ Y ID A VF+ +PEK + W +M+
Sbjct: 168 FQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKM 227
Query: 90 GQMDHAMKLI------DLMP----LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
G+ +++L +++P L V S ++ +IH+ +I D
Sbjct: 228 GRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHA--HILRYGLEMDAS 285
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
N LI +Y G + A ++F M KN+I+W T+++GY ++ L+ E ++LF M
Sbjct: 286 LMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFG 345
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+KPD +S+L++CA+L +L G ++H Y L ++ + T +LIDMYAKC + +
Sbjct: 346 LKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDAR 405
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGY---AALKLLGEMNDSCVKADDITFIGLLSACS 316
+VF DV +NAMI G + G + AL + +M ++ +TF+ LL A +
Sbjct: 406 KVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASA 465
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 159/347 (45%), Gaps = 19/347 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ E V D Y +L A IL G +H ++ G + L+ Y
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---LK-DVTSFNIMISG 116
+ A K+F MP K+II+W ++L + AM+L M LK D+ + + +++
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359
Query: 117 YARI------GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A + ++H+ Y D NSLI Y + A ++F +V+
Sbjct: 360 CASLHALGFGTQVHA--YTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVV 417
Query: 171 TWNTMVTGYLR--SQLYI-EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+N M+ GY R +Q + E +++F +M+ ++P LT S+L A A+L SL +IH
Sbjct: 418 LFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIH 477
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
GL + A +ALID+Y+ C ++ S VF + +VKD+ WN+M G
Sbjct: 478 GLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENE 537
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG----CELFSR 330
AL L E+ S + D+ TF +++A + VQ G C+L R
Sbjct: 538 EALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR 584
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 144/297 (48%), Gaps = 11/297 (3%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
++HGQ I G Y+ L+ +Y + A KVFEKMPE+++++W++M+ A G
Sbjct: 65 VVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHG 124
Query: 91 QMDHAMKL-IDLMPLKDVTSFNIMISGYARI--GKIHSARYIFDKVPA--------KDVV 139
+ ++ + ++ + + ++S + + G R++ ++ + +DV
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVY 184
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
LI Y G ++ A +F + K+ +TW TM++G ++ + LF ++ N
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V PD +++VLSAC+ L LE G +IH + GL + LID Y KCG + +
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
++F K++ W ++ G + A++L M+ +K D +L++C+
Sbjct: 305 KLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 4/230 (1%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNV 200
N LI Y+ AG M A ++F+KM +N+++W+TMV+ +Y E + +F E +
Sbjct: 83 NILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKD 142
Query: 201 KPDYLTVTSVLSACANLGSLETGA--RIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
P+ ++S + AC+ L ++ + +G + + T LID Y K G+I+ +
Sbjct: 143 SPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYA 202
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
VF K W MI G G Y +L+L ++ + V D +LSACS
Sbjct: 203 RLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSIL 262
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++ G ++ + + + +G+ ++D + + A +L MP
Sbjct: 263 PFLEGGKQIHAHILR-YGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP 311
>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/489 (33%), Positives = 256/489 (52%), Gaps = 61/489 (12%)
Query: 32 LHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
+HG K G ++ TALL Y +L A +F++MP+ +++ +M A A+ G
Sbjct: 33 IHGLLFKEGLLHAGAHLPTALLSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASG 92
Query: 91 QMDHAMKLID------LMP----------------------------------------- 103
Q A+ + ++P
Sbjct: 93 QAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTSG 152
Query: 104 -LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK 162
+ DV +I Y G++ +R +FD +P + VSWN+++ Y + A E+F
Sbjct: 153 IVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFL 212
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN---VKPDYLTVTSVLSACANLGS 219
M ++V++WNTM+ GY ++E ++L +M + + V P+ T+++VL+ACA G
Sbjct: 213 AMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGC 272
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS-QVKDVFCWNAMIL 278
LETG +H + N + + +LIDMY KCGSIE++L+VF K+ + +D++ W MI
Sbjct: 273 LETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMIC 332
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
GLA+HG ALK+ G M D+ + DD+T +G+L+AC+H GLV EG F +EK + +T
Sbjct: 333 GLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRHFYSLEK-YAIT 391
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
K+EHYGC++DLLGR L A +I M +P I GA L+AC +H ++E+G+ +
Sbjct: 392 PKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPNAVIWGAFLNACKVHSNVELGE----I 447
Query: 399 VCAKSNYLSDGEL---MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYH 455
A+ L G+ +M ++LYA W R R MN+ I KT G S IE++G H
Sbjct: 448 AAAELTRLDPGDPWAKVMLSSLYAKLQDWNSLARERREMNNLQIKKTPGCSSIELDGEVH 507
Query: 456 KFLAGGIGH 464
+F+AGG H
Sbjct: 508 EFVAGGFQH 516
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 141/312 (45%), Gaps = 46/312 (14%)
Query: 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI 76
L AAG+ ++ G M+H + +G V+V T L+++YG + + ++F+ MP +
Sbjct: 129 LPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRST 188
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI------------H 124
++WN+M+ + + A +L MP +DV S+N MI+GY+ +G+
Sbjct: 189 VSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISP 248
Query: 125 SARYIFDKVPAKDVV-------------SW-----------------NSLILAYTNAGEM 154
S+ ++ P V W SLI Y G +
Sbjct: 249 SSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSI 308
Query: 155 EKAGEMFKKML-VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
EKA ++F+K +++ +W TM+ G + + +F M+ + PD +T+ VL+A
Sbjct: 309 EKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNA 368
Query: 214 CANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVF 271
CA+ G ++ G R H Y+ + + +ID+ + G ++++ + ++K +
Sbjct: 369 CAHCGLVDEGLR-HFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPNAV 427
Query: 272 CWNAMILGLALH 283
W A + +H
Sbjct: 428 IWGAFLNACKVH 439
>gi|357124820|ref|XP_003564095.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 483
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 167/427 (39%), Positives = 238/427 (55%), Gaps = 23/427 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH K G V + TALL YG + A ++F++M +D IA+N+ML A + G+
Sbjct: 29 LHCLVCKLGHASDVVMATALLTCYGKRGLLALAQRLFDEMTRRDSIAFNAMLAALGASGR 88
Query: 92 MDHAMKLIDLMPLKDVT--SFNIMISGYARIGKIHSARYIFD---KVPAKDVVSWNSLIL 146
A +L D MP D T S+N +++ Y R G + SAR +FD + +VSWN++I
Sbjct: 89 TADARRLFDRMPDADRTPASWNTVLTCYCRAGDLASAREVFDASLRATTSSLVSWNAMID 148
Query: 147 AYTNAGEMEKAGEMFKKML---VKNVITWNTMVTGYLRSQLYIEVVDLFDE-MKAGNVKP 202
Y AG M+ A E+F +M ++V+TWNTM+ GYLR + +F M+ ++P
Sbjct: 149 GYCKAGRMDAAQELFDRMTGSSPRDVVTWNTMMAGYLRRGDPAAAIAMFRRLMQQQTLRP 208
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T+ + +SACA G L G IH+ G ++ + ALIDMY KCGS++++LEVF
Sbjct: 209 TTVTMATAVSACAQAGDLALGREIHLSIRRLGTTADAVLSNALIDMYFKCGSVDRALEVF 268
Query: 263 Y--KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
++FCWN +I GL + G A++ +M + VK D +TF+ +LSACSH+GL
Sbjct: 269 VTMPGGAPNLFCWNTLIAGLGRNSRGEDAVRAFRDMVEKVVKPDAVTFVAVLSACSHSGL 328
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V EG ELF+ M GV ++EHYGCMVDLL RA LL A L+ AMP P ILG+LL
Sbjct: 329 VAEGRELFAEMLPVHGVAPRMEHYGCMVDLLCRAGLLGEATRLVRAMPVRPNAKILGSLL 388
Query: 381 SACVIH-------QDLEIGDRVAKMVCAKSNYLS--DGELMMFANLYASCGQWE--EANR 429
H Q E G RV + + L DG +N+YAS +W+ E +R
Sbjct: 389 LHAHAHARGPGPEQGEEDGVRVGQWAAEQIAELDSHDGAAFGLSNMYASLQRWDHVEMHR 448
Query: 430 WRN-MMN 435
R+ MMN
Sbjct: 449 RRSKMMN 455
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/472 (34%), Positives = 255/472 (54%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ + ++ LKA + +G LH +K ++V L+ MY
Sbjct: 350 MKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL 409
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
++DA F +PEKD+IAWN+++ ++ + A+ L M + + T+ + ++
Sbjct: 410 LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKS 469
Query: 117 YARIGKIHSARYIFD-KVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + +H R + V + D+ NSLI +Y +E A +F++ + +++++
Sbjct: 470 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSF 529
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+M+T Y + E + LF EM+ +KPD +S+L+ACANL + E G ++HV+
Sbjct: 530 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK 589
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + A +L++MYAKCGSI+ + F + + + W+AMI GLA HG+G AL+L
Sbjct: 590 YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQL 649
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M V + IT + +L AC+HAGLV E F ME+ FG EHY CM+DLLG
Sbjct: 650 FNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLG 709
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA ++ A+EL+ MPFE S+ GALL A IH+D+E+G R A+M+ S G +
Sbjct: 710 RAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKS-GTHV 768
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YAS G+WE R +M D+ + K G S IEV + FL G H
Sbjct: 769 LLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSH 820
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/481 (24%), Positives = 216/481 (44%), Gaps = 41/481 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LGV + ++F +LKA I+ IG +HG + +GF G V+V L+ MY
Sbjct: 148 MHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDE 207
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--A 118
D+ ++F+++PE+++++WN++ + A+ L M L + +S A
Sbjct: 208 FLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNA 267
Query: 119 RIGKIHSAR------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
G S+R Y+ D S N+L+ Y G++ A +F+K+ ++++W
Sbjct: 268 CTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSW 327
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ G + + + + ++L +MK + P+ T++S L ACA +G E G ++H
Sbjct: 328 NAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMK 387
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ S+ + L+DMY+KC +E + F KD+ WNA+I G + + AL L
Sbjct: 388 MDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSL 447
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQ-----EGCELFSRMEKDFGVTRKL-EHYG- 345
EM+ + + T +L + + +V G + S D V L + YG
Sbjct: 448 FVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGK 507
Query: 346 -------------CMV-DLLGRARLL---------DRAIEL---IEAMPFEPTESILGAL 379
C + DL+ ++ + A++L ++ M +P + +L
Sbjct: 508 CSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSL 567
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L+AC E G ++ + L N+YA CG ++A R + + + GI
Sbjct: 568 LNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI 627
Query: 440 V 440
V
Sbjct: 628 V 628
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 171/362 (47%), Gaps = 19/362 (5%)
Query: 14 PLLLKAAGILSSSCI------GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
P + + +LS C GL +H K+G ++ L+ +Y R A K+
Sbjct: 54 PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARIGKI 123
++ E D+++W++++ +A G A+ M L V +F+ ++ + + +
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173
Query: 124 HSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ + V DV N+L++ Y E + +F ++ +NV++WN + + Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E V LF EM +KP+ +++S+++AC L G IH Y G +P
Sbjct: 234 VQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ AL+DMYAK G + ++ VF K + D+ WNA+I G LH + AL+LLG+M S
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRS 353
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSR-----MEKDFGVTRKLEHYGCMVDLLGRA 354
+ + T L AC+ GL + G +L S ME D V+ L DLL A
Sbjct: 354 GICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDA 413
Query: 355 RL 356
R+
Sbjct: 414 RM 415
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+++L D+ GN P ++ + +LS C SL G +IH + T +GL+ +P LI+
Sbjct: 43 ILNLIDK---GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLIN 99
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
+Y+KC + + ++ +S D+ W+A+I G A +G G AL EM+ VK ++ T
Sbjct: 100 LYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFT 159
Query: 308 FIGLLSACS-----HAGLVQEGCELFSRMEKDFGVTRKL-EHYGCMVDLLGRARLLDRAI 361
F +L ACS G G + S E D V L Y + L RL D
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP 219
Query: 362 E 362
E
Sbjct: 220 E 220
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/487 (30%), Positives = 266/487 (54%), Gaps = 46/487 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ DN +FP +LKA +++ G +H K G ++V +L+ +Y + + A
Sbjct: 547 GMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYA 606
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK------------------- 105
VF++M KD+++WNS++ ++ C + + L LM +
Sbjct: 607 RSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRL 666
Query: 106 --------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
DV N ++ + R G++ SA +F + +++V+ N++I
Sbjct: 667 GDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMI 726
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
AY ++ A ++F ++ K++I+W++M++GY ++ + + +++F +M+ VKPD +
Sbjct: 727 AAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAI 786
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ SV+S+CA+LG+L+ G +H Y N + ++ +LIDMY KCGS +++L+VF +
Sbjct: 787 VIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEM 846
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ KD WN++I+GLA +G+ +L L M + + +TF+G+L AC++A LV+EG
Sbjct: 847 KEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGL 906
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
+ F M++ + + +++HYGC+VDLLGRA L++A+ I MP +P + LL +C
Sbjct: 907 DHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNT 966
Query: 386 HQDLEIGDRVAKMVCAKSNYL---SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
H D+ I A++V K N L + G + +N YAS +W EA R M DT + K+
Sbjct: 967 HGDVAI----AEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKS 1022
Query: 443 AGSSVIE 449
G S +E
Sbjct: 1023 PGCSAVE 1029
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 211/401 (52%), Gaps = 9/401 (2%)
Query: 50 ALLKMYGSLRCIDDAFKVFEKM---PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK- 105
ALLK Y DA ++F D A+ L A A G M+L L+ K
Sbjct: 60 ALLKAYSHGPHPQDALQLFRHARWHAADDTYAFTFALKACAGLGWPRCCMQLHGLVVRKG 119
Query: 106 ---DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK 162
+++ Y G + +R F+++P K+ VSWN +I + GE+E A +F+
Sbjct: 120 FEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFE 179
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+M +NV++W+ M+ GY R+ +E V LF M A + P +TV +V+ A +N+G +
Sbjct: 180 RMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILI 239
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS-QVKDVFCWNAMILGLA 281
G +H Y GL + +LID+YAK GSI+ SL VF + +++ W ++I G A
Sbjct: 240 GEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFA 299
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+HG A++L +M + ++ + ITF+ +L ACSH GLV++G F M ++ + +
Sbjct: 300 MHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDV 359
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401
+H+GC++D+LGRA L A ++I P E ++ LL C + ++E+G+R K + A
Sbjct: 360 KHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILA 419
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
G+ ++ +N+ ++ +A R +++ VK+
Sbjct: 420 LEREFG-GDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKS 459
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 150/311 (48%), Gaps = 42/311 (13%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D Y+F LKA L + LHG ++ GF YV TAL+ +Y C+ D+ F
Sbjct: 88 DTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAF 147
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
E+MP K+ ++WN ++ FA G++++A L + MP ++V S++ MI GY R + A
Sbjct: 148 EEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVA 207
Query: 129 IFDK----------------VPA------------------KDVVSW-----NSLILAYT 149
+F + VPA K+ + W NSLI Y
Sbjct: 208 LFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYA 267
Query: 150 NAGEMEKAGEMFKKML-VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G ++ + +F +ML +N+++W ++++G+ L ++ V+LF +M+ ++P+ +T
Sbjct: 268 KIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFL 327
Query: 209 SVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
SVL AC++ G +E G A + + + +IDM + G + ++ ++ V
Sbjct: 328 SVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPV 387
Query: 268 K-DVFCWNAMI 277
+ + W ++
Sbjct: 388 EVNATVWRTLL 398
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 26/335 (7%)
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF-NIM-------ISGYARIGKIHSA 126
D + ++ML + KL+D V SF NI+ + Y + +++
Sbjct: 427 DFVVLSNMLTELRRFSDAEIVRKLVD--QRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNC 484
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
Y KV + L+ A+ ++F ++ WN ++ G +S
Sbjct: 485 HYAMSKVLRSYAILQPDLVFAH----------KVFDQIEAPTTFLWNILIRGLAQSDAPA 534
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
+ + + + + G + PD LT +L ACA + +L G ++H + T GL S+ + +LI
Sbjct: 535 DAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLI 594
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
+YA CG++ + VF + VKDV WN++I G + L L M + VKAD +
Sbjct: 595 HLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKV 654
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
T I ++SAC+ G + R +D+ + + +VD GR L A ++
Sbjct: 655 TMIKVVSACTRLGDYSMA-DYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFN 713
Query: 367 MPFEPTESILGALLSACVIHQDL----EIGDRVAK 397
M + + A+++A QD+ +I D++ K
Sbjct: 714 MKVRNIVT-MNAMIAAYAKGQDIVSARKIFDQIPK 747
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 145/370 (39%), Gaps = 67/370 (18%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM-PEKDIIAWNSMLDAF 86
IG LHG K G V V +L+ +Y + I ++ +VF++M +++++W S++ F
Sbjct: 239 IGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGF 298
Query: 87 ASCGQMDHAMKLIDLM------PLK----------------------------------D 106
A G A++L M P + D
Sbjct: 299 AMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPD 358
Query: 107 VTSFNIMISGYARIGKIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKML 165
V F +I R G++ A I P + + W +L+ + GE+E KK+L
Sbjct: 359 VKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKIL 418
Query: 166 V------KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+ + + M+T R V L D+ + + + N+
Sbjct: 419 ALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNS-------------VKSFFNIVR 465
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGS-IEQSLEVFYKSQVKDVFCWNAMIL 278
+E R+H Y +GL + +A + ++ YA + + +VF + + F WN +I
Sbjct: 466 MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIR 525
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK----- 333
GLA A+ + + D++TF +L AC+ + EG ++ + + K
Sbjct: 526 GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 585
Query: 334 DFGVTRKLEH 343
D V+ L H
Sbjct: 586 DIFVSNSLIH 595
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D ++ + L + +G +H + ++ +L+ MY
Sbjct: 776 MQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGS 835
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
+A +VF++M EKD ++WNS++ A+ G ++ L M
Sbjct: 836 AKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAM 877
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 244/467 (52%), Gaps = 9/467 (1%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D+Y+F + LKA + G +H Q +K GF +V L MY ++
Sbjct: 213 VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGL 272
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARIG 121
+FEKM +D+++W +++ GQ + A++ M DV+ +F +ISG A +
Sbjct: 273 TLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLA 332
Query: 122 KIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+I + + A + NS++ Y G++ + +F +M +++++W+T++
Sbjct: 333 RIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY + E +L M+ KP + SVLSAC N+ LE G ++H Y GL
Sbjct: 393 GYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ALI+MY KCGSIE++ +F ++ D+ W AMI G A HGY + L ++
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
++ D +TFIG+LSACSHAGLV G F+ M K + ++ EHYGCM+DLL RA L
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
A +IEAMPF + + LL AC +H D+E G R A+ + + G + AN+
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCA-GTHITLANI 631
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YAS G+W EA R +M G++K G S I+V F+AG H
Sbjct: 632 YASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSH 678
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 166/333 (49%), Gaps = 8/333 (2%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E G+ D + L KA G+ S G +LHG +KTG V+V +ALL MY I
Sbjct: 109 ESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIF 168
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYA 118
+ +VF +MP +++++W +++ G A+ M D +F I + A
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228
Query: 119 RIGKIHSARYIFDKVPAK--DVVSW--NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
G ++ R I + K DV S+ N+L Y G++E +F+KM +++V++W T
Sbjct: 229 DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTT 288
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++T ++ V F M+ +V P+ T +V+S CANL +E G ++H G
Sbjct: 289 IITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLG 348
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
LA++ +++ MYAKCG + S +F++ +D+ W+ +I G + G+ A +LL
Sbjct: 349 LAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLS 408
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
M K + +LSAC + +++ G +L
Sbjct: 409 WMRMEGPKPTEFALASVLSACGNMAILEHGKQL 441
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 117/491 (23%), Positives = 198/491 (40%), Gaps = 83/491 (16%)
Query: 16 LLKAAGILSSSCIGL-MLHGQTIKTGFCGHVYVQTALLKMYGSLR------CIDDAFKVF 68
L A + S+ CI L +L H QT L + L+ + +A ++F
Sbjct: 13 LFTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMF 72
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--------------------LKDVT 108
+KM +KD I+W +++ + + A+ L M L
Sbjct: 73 DKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDV 132
Query: 109 SFNIMISGYA-RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
++ ++ GYA + G ++S V ++L+ YT G++ + +F +M ++
Sbjct: 133 NYGELLHGYAVKTGLVNS------------VFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
NV++W ++TG +R+ E + F EM V+ D T L ACA+ G+L G IH
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
A G + L MY KCG +E L +F K ++DV W +I L G
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL-------------------- 327
A++ M +S V ++ TF ++S C++ ++ G +L
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360
Query: 328 ---------------FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE-- 370
F M + R + + ++ + + A EL+ M E
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTR-----RDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGP 415
Query: 371 -PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
PTE L ++LSAC LE G ++ V + + L N+Y CG EEA+R
Sbjct: 416 KPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASR 475
Query: 430 WRNMMNDTGIV 440
+ + IV
Sbjct: 476 IFDAAENDDIV 486
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 135/294 (45%), Gaps = 10/294 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V + Y+F ++ L+ G LH + G + V+ +++ MY
Sbjct: 309 MRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQ 368
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNI--MISG 116
+ + +F +M +DI++W++++ ++ G + A +L+ M ++ T F + ++S
Sbjct: 369 LTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 428
Query: 117 YARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ + + Y+ + ++LI Y G +E+A +F ++++W
Sbjct: 429 CGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSW 488
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYAT 231
M+ GY EV+DLF+++ ++PD +T VLSAC++ G ++ G R + +
Sbjct: 489 TAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSK 548
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHG 284
++ + +ID+ + G + + + +D W+ ++ +HG
Sbjct: 549 KYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 602
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/435 (36%), Positives = 247/435 (56%), Gaps = 47/435 (10%)
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL---MP-------------------- 103
+F ++P ++ +WN+++ A +CG +HA+ + +P
Sbjct: 67 IFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGL 126
Query: 104 -------------LKDVTSFNI-----MISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
+K NI ++ Y + + SA +FD++P +DVVSWN+++
Sbjct: 127 EAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMV 186
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDY 204
Y G++E A +F +ML ++VI+WN M+ GY+++ Y + +++F EM K G V PD
Sbjct: 187 SGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDD 246
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+T+ SVLSACA++G+L+ G I + G N + ALIDMYAKCG++E++ +F
Sbjct: 247 VTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDG 306
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ +DV W+ MI G HG A +M + VK +++TF+GLLSACSHAGLV +G
Sbjct: 307 MRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKG 366
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
ELFSRM +++ + K+ HYGC++DLL RA LD A +LI +MP EP + GALL C
Sbjct: 367 IELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCR 426
Query: 385 IHQDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYASCGQWEE-ANRWRNMMNDTGIVKT 442
IH+D G+RVA+ ++ S Y G + A AS G+ ++ AN W M + GI+K
Sbjct: 427 IHKDFRRGERVAQHLLELDSEYT--GSYVYIAGAKASVGRVDDAANCWLRMQH-KGIIKD 483
Query: 443 AGSSVIEVNGSYHKF 457
G S IEV+ + H+F
Sbjct: 484 PGCSKIEVHNTVHEF 498
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 151/319 (47%), Gaps = 42/319 (13%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
+ + Y + L+KA L + GL +H IK+G ++++ T+L+ MY R A +
Sbjct: 110 NPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQ 169
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF++MP +D+++WN+M+ + CG ++ A ++ D M +DV S+N MI GY + GK A
Sbjct: 170 VFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDA 229
Query: 127 RYIFDK-------VP----------------AKDVVSW-----------------NSLIL 146
+F + VP A D W N+LI
Sbjct: 230 IEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALID 289
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y G ME+A +F M ++VI+W+TM+ G E + +M VKP+ +T
Sbjct: 290 MYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVT 349
Query: 207 VTSVLSACANLGSLETGARIHVY-ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+LSAC++ G ++ G + + + +ID+ ++ G ++++ ++
Sbjct: 350 FMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSM 409
Query: 266 QVK-DVFCWNAMILGLALH 283
++ +V W A++ G +H
Sbjct: 410 PIEPNVIVWGALLGGCRIH 428
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 214/355 (60%), Gaps = 11/355 (3%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N ++ Y + + A +F+++ +D VSWN+LI + G+M +A +F++M K +
Sbjct: 156 NSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIF 215
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +V+GY R Y + ++ F M+ ++PD +++ SVL ACA LG+LE G IH YA
Sbjct: 216 SWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYA 275
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G N ALI+MYAKCGSI++ +F + +DV W+ MI+GLA HG + A+
Sbjct: 276 DKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAI 335
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L EM + ++ + ITF+GLLSAC+HAGL+ EG F M++D+ + +EHYGC+V+L
Sbjct: 336 ELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNL 395
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS--- 407
LG + LD+A+ELI+ MP +P +I G+LLS+C H +LEI V A + L
Sbjct: 396 LGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIA------VIAMEHLLELEP 449
Query: 408 --DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G ++ +NLYA G+W+ +R R +M + KT G S IEV+ +F +G
Sbjct: 450 ADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASG 504
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 148/316 (46%), Gaps = 41/316 (12%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E + D ++FP ++K+ L +G +HG K G + V+ +L++MY +D
Sbjct: 110 ENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLD 169
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
DA KVFE+M E+D ++WN+++ GQM A + + M K + S+ ++SGYARIG
Sbjct: 170 DAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGC 229
Query: 123 IHSARYIFDK----------------VPA-----------------------KDVVSWNS 143
A F + +PA +++ N+
Sbjct: 230 YADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNA 289
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y G +++ +F +M ++VI+W+TM+ G E ++LF EM+ ++P+
Sbjct: 290 LIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPN 349
Query: 204 YLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T +LSACA+ G L G R D + L+++ G ++Q+LE+
Sbjct: 350 IITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELI 409
Query: 263 YKSQVK-DVFCWNAMI 277
K +K D W +++
Sbjct: 410 KKMPMKPDSAIWGSLL 425
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 44/295 (14%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-----KAGNVKPDYLT 206
E E A +FK++ N +N M+ Y +++Y+ + ++ +M + PD T
Sbjct: 60 AETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFT 119
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
V+ +CA L + G ++H + G SN +L++MY KC S++ + +VF +
Sbjct: 120 FPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMT 179
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+D WN +I G G A + EM D + ++ ++S + G + E
Sbjct: 180 ERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTI----FSWTAIVSGYARIGCYADALE 235
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
F RM+ MV + EP E L ++L AC
Sbjct: 236 FFRRMQ--------------MVGI-------------------EPDEISLVSVLPACAQL 262
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMNDTGIV 440
LE+G + K+ +L + + +YA CG +E R + MN+ ++
Sbjct: 263 GALELGKWI-HFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVI 316
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 123/263 (46%), Gaps = 23/263 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ +G+ D S +L A L + +G +H K GF ++ V AL++MY
Sbjct: 240 MQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGS 299
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
ID+ ++F++M E+D+I+W++M+ A+ G+ A++L M ++ +F ++S
Sbjct: 300 IDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSA 359
Query: 117 YARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
A G ++ F+ + V + L+ +G +++A E+ KKM +K +
Sbjct: 360 CAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSA 419
Query: 171 TWNTMVTG-YLRSQLYIEVVDL-----FDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
W ++++ S L I V+ + + GN Y+ ++++ A+LG + +
Sbjct: 420 IWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGN----YVLLSNLY---ADLGKWDGVS 472
Query: 225 RIHVYATDNGLASNPHATTALID 247
R+ + P ++ +D
Sbjct: 473 RMRKLMRSKSMKKTPGCSSIEVD 495
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 267/496 (53%), Gaps = 51/496 (10%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
QE G+ DN +FP +LKA + G +H IK GF ++V +L+ +Y + +
Sbjct: 932 QEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGAL 991
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS------------ 109
A VF +M KD+++WNS++ ++ ++ + L LM ++V +
Sbjct: 992 ACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISAC 1051
Query: 110 ---------------------------FNIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
N +I Y RIG++ SA +F ++ K+ V+ N
Sbjct: 1052 THLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLN 1111
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
++I AY G + A ++F ++ K++I+W++M+ Y ++ + + ++LF +M+ VKP
Sbjct: 1112 AMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKP 1171
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D + + SVLSACA+LG+L+ G IH Y N + ++ +LIDM+AKCG ++++L+VF
Sbjct: 1172 DAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVF 1231
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ KD WN++ILGLA +G+ AL + M + +++TF+G+L AC++ LV+
Sbjct: 1232 TDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVE 1291
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EG + F RM+ + +++HYGC+VD+L RA L++A+ I MP P + LL A
Sbjct: 1292 EGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGA 1351
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDG---ELMMFANLYASCGQWEEA---NRWR--NMM 434
C H ++ VA+M K + L G + M+ +N+YAS +W +A RW N +
Sbjct: 1352 CRTHGNVA----VAEMATKKLSELDPGNSADSMLLSNIYASADRWSDAMNVRRWTADNAV 1407
Query: 435 NDTGIVKTAGSSVIEV 450
++ +V SV+E+
Sbjct: 1408 GESELVPDRDDSVLEL 1423
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 197/334 (58%), Gaps = 3/334 (0%)
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD++P K+VVSWN +I + GE+E A +F +M +NV++W ++ GY R+ LY
Sbjct: 533 ARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLY 592
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
E + L M AG + P +TV +V+ A +NLG + G ++ Y G+ S+ +L
Sbjct: 593 AEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSL 652
Query: 246 IDMYAKCGSIEQSLEVFYKS-QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
ID+YAK GS++ SL+VF + +++ W ++I G A+HG AL+L EM + +K +
Sbjct: 653 IDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 712
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITF+ +++ACSH GLV++G F M ++ + +++H+GC++D+LGRA L A ++I
Sbjct: 713 RITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQII 772
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
E +P E ++ LL C + ++ +G+R KM+ + S G+ + +N+ G++
Sbjct: 773 EGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMI-SDLERESGGDFAVLSNVLTELGRF 831
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+A + R +++ IVK +V+E H L
Sbjct: 832 SDAEQARKLLDQRKIVKLQ-EAVMEAVKKLHAHL 864
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 174/364 (47%), Gaps = 58/364 (15%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D + F +LKA L G LH ++ GF H YV TAL+ +Y RC+ +A KVF
Sbjct: 478 DTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVF 537
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI-------- 120
++MP K++++WN M+ FA G++++A L D MP ++V S+ +I GY R
Sbjct: 538 DEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALT 597
Query: 121 --------GKIHSARYIFDKVPA-----------------------KDVVSWNSLILAYT 149
G S + +PA D NSLI Y
Sbjct: 598 LLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYA 657
Query: 150 NAGEMEKAGEMFKKML-VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G ++ + ++F +ML +N+++W ++++G+ L +E ++LF EM+ +KP+ +T
Sbjct: 658 KIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFL 717
Query: 209 SVLSACANLGSLETG-----ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
SV++AC++ G +E G + ++ Y D + +IDM + G + ++ ++
Sbjct: 718 SVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKH----FGCIIDMLGRAGRLCEAEQIIE 773
Query: 264 KSQVK-DVFCWNAMILGLALHG---YGYAALKLLGEMN-----DSCVKADDITFIGLLSA 314
++ +V W ++ + +G G A+K++ ++ D V ++ +T +G S
Sbjct: 774 GLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSD 833
Query: 315 CSHA 318
A
Sbjct: 834 AEQA 837
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 32/301 (10%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMP-EKDIIAWNSMLDAFASCGQM---DHAMKLIDLMPLKD 106
++ M G + +A ++ E +P E ++ W +L + G++ + A+K+I + +
Sbjct: 755 IIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERES 814
Query: 107 VTSFNIMISGYARIGKI---HSARYIFD----------------KVPAKDVVS------- 140
F ++ + +G+ AR + D K+ A VVS
Sbjct: 815 GGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGLHNCQY 874
Query: 141 -WNSLILAYT-NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+ +I Y + ++ A ++FK++ WNT++ G +S + + + + +
Sbjct: 875 AMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEK 934
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+KPD LT VL ACA + + G ++H + G + + +LI +YA CG++ +
Sbjct: 935 GMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACA 994
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
VF + VKDV WN++I G + H L L M V+AD +T + ++SAC+H
Sbjct: 995 RSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHL 1054
Query: 319 G 319
G
Sbjct: 1055 G 1055
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
K+ ++ W + Y +E + LF + ++ D T VL ACA LG
Sbjct: 439 KVFDQSPAPWRAFLKAYSHGPFPLEALHLFKHARQ-HLADDTFVFTFVLKACAGLGWHRA 497
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
GA++H G + + TALI++Y + ++ +VF + VK+V WN MI G A
Sbjct: 498 GAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAG 557
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
G A L +M V +++ GL+ + A L E L M
Sbjct: 558 WGEVEYARLLFDQMPCRNV----VSWTGLIDGYTRACLYAEALTLLRHM 602
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/366 (20%), Positives = 152/366 (41%), Gaps = 62/366 (16%)
Query: 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM-P 72
P + GIL +G ML+G K G V +L+ +Y + + ++ KVF++M
Sbjct: 619 PAISNLGGIL----MGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLD 674
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PLK--------------------- 105
+++++W S++ FA G A++L M P +
Sbjct: 675 RRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLA 734
Query: 106 -------------DVTSFNIMISGYARIGKIHSARYIFDKVPAK-DVVSWNSLILAYTNA 151
++ F +I R G++ A I + +P + +V W L+ +
Sbjct: 735 FFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKY 794
Query: 152 GEM---EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
GE+ E+A +M + ++ + + S + E+ D +A + D +
Sbjct: 795 GEVAMGERAIKMISDLERESGGDFAVL------SNVLTELGRFSDAEQARKLL-DQRKIV 847
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS-IEQSLEVFYKSQV 267
+ A +E ++H + +GL + +A + +I +YA S + + +VF + +
Sbjct: 848 KLQEAV-----MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIES 902
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
F WN ++ GLA A+ + + +K D++TF +L AC+ +EG ++
Sbjct: 903 PTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQM 962
Query: 328 FSRMEK 333
+ + K
Sbjct: 963 HNHVIK 968
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 91/213 (42%), Gaps = 15/213 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D +L A L + +G +H + ++ +L+ M+ C
Sbjct: 1164 MQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGC 1223
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+ +A +VF M EKD ++WNS++ A+ G D A+ + M P + +F ++
Sbjct: 1224 VQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIA 1283
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVI 170
A + F+++ + + + ++ + AG++EKA +M L + +
Sbjct: 1284 CANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPV 1343
Query: 171 TWNTMVTGYLRSQLYIEVVDL----FDEMKAGN 199
W ++ G R+ + V ++ E+ GN
Sbjct: 1344 VWRILL-GACRTHGNVAVAEMATKKLSELDPGN 1375
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 165/478 (34%), Positives = 258/478 (53%), Gaps = 19/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D + +L G+++H +K G V+V AL+ MY
Sbjct: 213 MKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGR 272
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
+ DA VF++M +D+++WNS++ A+ A++ M L D+ + + S
Sbjct: 273 LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSI 332
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
++++ +R I V KDVV N+L+ Y G M A +F ++ K+ I+
Sbjct: 333 FSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTIS 392
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WNT+VTGY ++ L E +D ++ M+ + P+ T S++ A +++G+L+ G +IH
Sbjct: 393 WNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL 452
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
N L + T LID+Y KCG +E ++ +FY+ WNA+I L +HG G AL
Sbjct: 453 IKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEAL 512
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L +M VKAD ITF+ LLSACSH+GLV EG + F M+K++G+ L+HYGCMVDL
Sbjct: 513 QLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDL 572
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYL 406
LGRA L++A EL+ MP +P SI GALLSAC I+ + E+G DR+ ++ Y
Sbjct: 573 LGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGY- 631
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA+ +WE + R++ D G+ KT G S + V F G H
Sbjct: 632 ----YVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTH 685
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 151/312 (48%), Gaps = 21/312 (6%)
Query: 23 LSSSCIGL----MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIA 78
L +SC+ + LH + G ++ + T L+ +Y + I + F+ + +K+I +
Sbjct: 28 LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFS 87
Query: 79 WNSMLDAFASCGQMDHAMKLID----------LMPLKDVTSFNIMISGYARI---GKIHS 125
WNS++ A+ G+ AM ++ L P D +F ++ + K+H
Sbjct: 88 WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRP--DFYTFPPILKACVSLVDGKKVHC 145
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
+F DV SL+ Y+ G ++ A ++F M VK+V +WN M++G+ ++
Sbjct: 146 C--VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNA 203
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ + + MK VK D +TV S+L CA + G IH++ +GL S+ + AL
Sbjct: 204 AGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNAL 263
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
I+MY+K G ++ + VF + +V+D+ WN++I + AL+ M ++ D
Sbjct: 264 INMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDL 323
Query: 306 ITFIGLLSACSH 317
+T + L S S
Sbjct: 324 LTVVSLTSIFSQ 335
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 9/207 (4%)
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
K+H+ +F K ++++V LI Y G++ + F + KN+ +WN++++ Y+R
Sbjct: 40 KLHALLLVFGK--SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVR 97
Query: 182 SQLYIEVVD----LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
Y E ++ LF G+++PD+ T +L AC SL G ++H G
Sbjct: 98 FGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFED 154
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ +L+ +Y++ G ++ + +VF VKDV WNAMI G +G AL +L M
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEG 324
VK D IT +L C+ + V G
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVING 241
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 244/474 (51%), Gaps = 13/474 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + +++P +L+ +G +H ++KTGF +YV L+ MY
Sbjct: 336 MQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW 395
Query: 61 IDDAFKVFEKMPEKDIIAWNSML----------DAFASCGQMDHAMKLIDLMPLKDVTSF 110
++ A +V E + EKD+++W SM+ DA A+ +M D + L S
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISG 455
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
I+ + +IH+ Y+ + DV WN+L+ Y G + +A F+++ K+ I
Sbjct: 456 CAGINAMRQGLQIHARIYVSGY--SGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEI 513
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TWN +V+G+ +S L+ E + +F M VK + T S LSA ANL ++ G +IH
Sbjct: 514 TWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARV 573
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G + ALI +Y KCGS E + F + ++ WN +I + HG G AL
Sbjct: 574 IKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEAL 633
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M +K +D+TFIG+L+ACSH GLV+EG F M ++G+ + +HY C++D+
Sbjct: 634 DLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDI 693
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
GRA LDRA + IE MP + LLSAC +H+++E+G+ AK + + S
Sbjct: 694 FGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDS-AS 752
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N YA +W ++ R MM D G+ K G S IEV H F G H
Sbjct: 753 YVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLH 806
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 176/379 (46%), Gaps = 17/379 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV Y +L + G ++H Q K GFC ++V A++ +Y LRC
Sbjct: 134 MHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLY--LRC 191
Query: 61 --IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMI 114
A +VF MP +D + +N+++ A CG +HA+++ + M D + + ++
Sbjct: 192 GSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLL 251
Query: 115 SGYARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ A +G ++HS Y+F + D + SL+ Y G++E A +F N
Sbjct: 252 AACASLGDLQKGTQLHS--YLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTN 309
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+ WN M+ + + + +LF +M+A ++P+ T +L C ++ G +IH
Sbjct: 310 VVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS 369
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ G S+ + + LIDMY+K G +E++ V + KDV W +MI G H
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKD 429
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL EM + D+I +S C+ +++G ++ +R+ G + + + +V
Sbjct: 430 ALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS-GYSGDVSIWNALV 488
Query: 349 DLLGRARLLDRAIELIEAM 367
+L R + A E +
Sbjct: 489 NLYARCGRIREAFSSFEEI 507
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/451 (23%), Positives = 205/451 (45%), Gaps = 37/451 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H + + G + V L+ +Y + A +VFE++ +D ++W +ML +A G
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISG----------YARIGKIHSARYIFDKVPAKDVVSW 141
+ A+ L M V ++S +A+ IH+ Y ++
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGF--CSEIFVG 181
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N++I Y G A +F M ++ +T+NT+++G+ + +++F+EM+ +
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +T++S+L+ACA+LG L+ G ++H Y G++S+ +L+D+Y KCG +E +L +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F S +V WN M++ + +L +M + ++ + T+ +L C+ +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP------------- 368
G ++ S + G + G ++D+ + L++A ++E +
Sbjct: 362 DLGEQIHS-LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Query: 369 ---FEPTESILGAL--LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
E + L A + C I D IG A CA N + G L + A +Y S G
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPD-NIGLASAISGCAGINAMRQG-LQIHARIYVS-GY 477
Query: 424 WEEANRWRNMMN---DTGIVKTAGSSVIEVN 451
+ + W ++N G ++ A SS E+
Sbjct: 478 SGDVSIWNALVNLYARCGRIREAFSSFEEIE 508
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 165/478 (34%), Positives = 258/478 (53%), Gaps = 19/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D + +L G+++H +K G V+V AL+ MY
Sbjct: 213 MKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGR 272
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
+ DA VF++M +D+++WNS++ A+ A++ M L D+ + + S
Sbjct: 273 LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSI 332
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
++++ +R I V KDVV N+L+ Y G M A +F ++ K+ I+
Sbjct: 333 FSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTIS 392
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WNT+VTGY ++ L E +D ++ M+ + P+ T S++ A +++G+L+ G +IH
Sbjct: 393 WNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL 452
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
N L + T LID+Y KCG +E ++ +FY+ WNA+I L +HG G AL
Sbjct: 453 IKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEAL 512
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L +M VKAD ITF+ LLSACSH+GLV EG + F M+K++G+ L+HYGCMVDL
Sbjct: 513 QLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDL 572
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYL 406
LGRA L++A EL+ MP +P SI GALLSAC I+ + E+G DR+ ++ Y
Sbjct: 573 LGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGY- 631
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA+ +WE + R++ D G+ KT G S + V F G H
Sbjct: 632 ----YVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTH 685
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 151/312 (48%), Gaps = 21/312 (6%)
Query: 23 LSSSCIGL----MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIA 78
L +SC+ + LH + G ++ + T L+ +Y + I + F+ + +K+I +
Sbjct: 28 LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFS 87
Query: 79 WNSMLDAFASCGQMDHAMKLID----------LMPLKDVTSFNIMISGYARI---GKIHS 125
WNS++ A+ G+ AM ++ L P D +F ++ + K+H
Sbjct: 88 WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRP--DFYTFPPILKACVSLVDGKKVHC 145
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
+F DV SL+ Y+ G ++ A ++F M VK+V +WN M++G+ ++
Sbjct: 146 C--VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNA 203
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ + + MK VK D +TV S+L CA + G IH++ +GL S+ + AL
Sbjct: 204 AGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNAL 263
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
I+MY+K G ++ + VF + +V+D+ WN++I + AL+ M ++ D
Sbjct: 264 INMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDL 323
Query: 306 ITFIGLLSACSH 317
+T + L S S
Sbjct: 324 LTVVSLTSIFSQ 335
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 9/207 (4%)
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
K+H+ +F K ++++V LI Y G++ + F + KN+ +WN++++ Y+R
Sbjct: 40 KLHALLLVFGK--SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVR 97
Query: 182 SQLYIEVVD----LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
Y E ++ LF G+++PD+ T +L AC SL G ++H G
Sbjct: 98 FGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFED 154
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ +L+ +Y++ G ++ + +VF VKDV WNAMI G +G AL +L M
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEG 324
VK D IT +L C+ + V G
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVING 241
>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]
Length = 932
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/403 (37%), Positives = 236/403 (58%), Gaps = 7/403 (1%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
TA++K Y D+A K+F +MP++++ +WN+M+ +++ A KL LMPL++
Sbjct: 134 TAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAV 193
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+ IM+SG AR G AR FD++P KD+ +WN++I AY + + +A E+F M +N
Sbjct: 194 SWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERN 253
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++TWN M+ GY R + E + M ++P+ T+T +L++C G LE + H
Sbjct: 254 IVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSC--WGMLEL-MQAHA 310
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
A G + ALI MY++ G I S F + KDV W AM+L HG+G
Sbjct: 311 LAIVVGCECETSLSNALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDH 370
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL + G M S K D+ITF+G+LSACSHAGLV++G +LF M + +G+ + EHY C+V
Sbjct: 371 ALHVFGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLV 430
Query: 349 DLLGRARLLDRAIELIEAMP-FEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYL 406
D+LGRA + A++++ MP E ++LGALL AC +H ++E+ D + K++ + N
Sbjct: 431 DILGRAGQVHEAMDVVWKMPECERDGAVLGALLGACRLHGNVEMADYIGQKLIELQPN-- 488
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
S G ++ AN++A+ G W+E R M D + K G S IE
Sbjct: 489 SSGGYVLLANVFAARGNWDEFAEVRKKMKDRNVRKVPGFSQIE 531
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 152/290 (52%), Gaps = 16/290 (5%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
+ ++A++ Y +D A KVF+ M + ++ +W S++ + GQ+ A +L D MP
Sbjct: 37 IVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPA 96
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
K+V S+ M+ GYAR G I AR +F+++P K+ +SW +++ +Y + G ++A ++F +M
Sbjct: 97 KNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEM 156
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+N+ +WNTM++G L + E LF M N ++ T ++S A G +
Sbjct: 157 PQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNA----VSWTIMVSGLARNGFTKLAR 212
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+ +A+ TA +D +C +E S E+F +++ WNAMI G A H
Sbjct: 213 EYFDQMPNKDIAAWNAMITAYVD---ECLIVEAS-ELFNLMTERNIVTWNAMIDGYARHR 268
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSAC--------SHAGLVQEGCE 326
A+K L M SC++ ++ T +L++C +HA + GCE
Sbjct: 269 PDGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCE 318
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 168/351 (47%), Gaps = 21/351 (5%)
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
MP D +++ +M+ A+ ++ A KL MP + + + + MI GYA+ G + SA+ +F
Sbjct: 1 MPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVF 60
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD 190
D + +V SW SLI Y G++ KA ++F +M KNV++W TMV GY R+ L +
Sbjct: 61 DAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARS 120
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
+F++M N ++ T+++ + + G + ++ L S + +D
Sbjct: 121 VFNQMPEKNT----ISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLD--- 173
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
+ ++ ++F+ +++ W M+ GLA +G+ A + +M + + A +
Sbjct: 174 -GKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITA 232
Query: 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE---LIEAM 367
+ C L+ E ELF+ M + R + + M+D R R A++ L+
Sbjct: 233 YVDEC----LIVEASELFNLMTE-----RNIVTWNAMIDGYARHRPDGEAMKHLILMLRS 283
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMV-CAKSNYLSDGELMMFANL 417
P E+ + +L++C +L +A +V C LS+ + M++ +
Sbjct: 284 CIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSRI 334
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 22 ILSSSCIGLM----LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDII 77
I+ +SC G++ H I G + AL+ MY + I + FE + KD++
Sbjct: 294 IILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSRIGDISSSRIAFESLKAKDVV 353
Query: 78 AWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMISGYARIGKIHSARYIFD 131
+W +ML AF G DHA+ + M LK D +F ++S + G + + +FD
Sbjct: 354 SWTAMLLAFTYHGHGDHALHVFGHM-LKSGTKPDEITFVGVLSACSHAGLVKKGQKLFD 411
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/465 (34%), Positives = 238/465 (51%), Gaps = 61/465 (13%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA------ 85
+H Q +K +V L+ + R + A VF ++ + D++ +N+++ A
Sbjct: 36 IHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSE 95
Query: 86 ----FASCGQMDHA---------------------MKLIDLMPLK--------DVTSFNI 112
F+ +M + +++++++ + D+ N
Sbjct: 96 PLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNS 155
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+I Y ++G++ AR +FD++P +D VSWN+++ Y AGEM A E+F+KM +NV++W
Sbjct: 156 LIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSW 215
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+TM G +K D TV S+LSACA G L G R+H
Sbjct: 216 STMEAG---------------------LKFDDGTVISILSACAVSGLLGLGKRVHASIER 254
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ + ALIDMYAKCGS+E +L +F+ KDV WNA+I GLA+HG+G AL+L
Sbjct: 255 TRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQL 314
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M D +TF+G+L AC+HAG V EG F ME+D+GV ++EHYGCMVDLLG
Sbjct: 315 FSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLG 374
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R L A L+ +MP EP I G LL AC +H + + V + KS G L
Sbjct: 375 RGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRL-VKSELSDSGNLS 433
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
M +N+YA+ G W+ R M T I K +G S IEV+ H+F
Sbjct: 434 MLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEF 478
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 158/325 (48%), Gaps = 26/325 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ GV ADN+++P LLKA + M+H Q K GFC ++V +L+ Y L
Sbjct: 106 MQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGE 165
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM------- 113
+ +A ++F++MPE+D ++WN++LD + G+M+ A +L + MP ++V S++ M
Sbjct: 166 LGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFD 225
Query: 114 ------------ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
+SG +GK A + VS N+LI Y G +E A +F
Sbjct: 226 DGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVS-NALIDMYAKCGSLENALSIF 284
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
M+ K+V++WN ++ G + + LF MK PD +T VL AC + G ++
Sbjct: 285 HGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVD 344
Query: 222 TGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILG 279
G H D G+ ++D+ + G ++++ + + ++ + W ++
Sbjct: 345 EGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGA 404
Query: 280 LALHGYGYAALKLLGEMNDSCVKAD 304
+H +A L E+ D VK++
Sbjct: 405 CRMH----SATGLAEEVFDRLVKSE 425
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 100/262 (38%), Gaps = 46/262 (17%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
S L C++L ++ +IH L LI ++ C + ++ VF + Q
Sbjct: 22 SDLHRCSSLNQVK---QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDP 78
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
DV +N +I + A + EM DS V AD+ T+ LL ACS V+ +
Sbjct: 79 DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIH 138
Query: 329 SRMEK---------------------DFGVTRKL---------EHYGCMVDLLGRARLLD 358
+++EK + G R+L + ++D +A ++
Sbjct: 139 AQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMN 198
Query: 359 RAIELIEAMP-------------FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
A EL E MP + + + ++LSAC + L +G RV +
Sbjct: 199 AAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFK 258
Query: 406 LSDGELMMFANLYASCGQWEEA 427
S ++YA CG E A
Sbjct: 259 CSTPVSNALIDMYAKCGSLENA 280
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 244/474 (51%), Gaps = 13/474 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + +++P +L+ +G +H ++KTGF +YV L+ MY
Sbjct: 336 MQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW 395
Query: 61 IDDAFKVFEKMPEKDIIAWNSML----------DAFASCGQMDHAMKLIDLMPLKDVTSF 110
++ A +V E + EKD+++W SM+ DA A+ +M D + L S
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISG 455
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
I+ + +IH+ Y+ + DV WN+L+ Y G + +A F+++ K+ I
Sbjct: 456 CAGINAMRQGLQIHARIYVSGY--SGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEI 513
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TWN +V+G+ +S L+ E + +F M VK + T S LSA ANL ++ G +IH
Sbjct: 514 TWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARV 573
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G + ALI +Y KCGS E + F + ++ WN +I + HG G AL
Sbjct: 574 IKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEAL 633
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M +K +D+TFIG+L+ACSH GLV+EG F M ++G+ + +HY C++D+
Sbjct: 634 DLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDI 693
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
GRA LDRA + IE MP + LLSAC +H+++E+G+ AK + + S
Sbjct: 694 FGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDS-AS 752
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N YA +W ++ R MM D G+ K G S IEV H F G H
Sbjct: 753 YVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLH 806
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 176/379 (46%), Gaps = 17/379 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV Y +L + G ++H Q K GFC ++V A++ +Y LRC
Sbjct: 134 MHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLY--LRC 191
Query: 61 --IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMI 114
A +VF MP +D + +N+++ A CG +HA+++ + M D + + ++
Sbjct: 192 GSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLL 251
Query: 115 SGYARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ A +G ++HS Y+F + D + SL+ Y G++E A +F N
Sbjct: 252 AACASLGDLQKGTQLHS--YLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTN 309
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+ WN M+ + + + +LF +M+A ++P+ T +L C ++ G +IH
Sbjct: 310 VVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS 369
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ G S+ + + LIDMY+K G +E++ V + KDV W +MI G H
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKD 429
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL EM + D+I +S C+ +++G ++ +R+ G + + + +V
Sbjct: 430 ALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS-GYSGDVSIWNALV 488
Query: 349 DLLGRARLLDRAIELIEAM 367
+L R + A E +
Sbjct: 489 NLYARCGRIREAFSSFEEI 507
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/451 (23%), Positives = 205/451 (45%), Gaps = 37/451 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H + + G + V L+ +Y + A +VFE++ +D ++W +ML +A G
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISG----------YARIGKIHSARYIFDKVPAKDVVSW 141
+ A+ L M V ++S +A+ IH+ Y ++
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGF--CSEIFVG 181
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N++I Y G A +F M ++ +T+NT+++G+ + +++F+EM+ +
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +T++S+L+ACA+LG L+ G ++H Y G++S+ +L+D+Y KCG +E +L +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F S +V WN M++ + +L +M + ++ + T+ +L C+ +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP------------- 368
G ++ S + G + G ++D+ + L++A ++E +
Sbjct: 362 DLGEQIHS-LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Query: 369 ---FEPTESILGAL--LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
E + L A + C I D IG A CA N + G L + A +Y S G
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPD-NIGLASAISGCAGINAMRQG-LQIHARIYVS-GY 477
Query: 424 WEEANRWRNMMN---DTGIVKTAGSSVIEVN 451
+ + W ++N G ++ A SS E+
Sbjct: 478 SGDVSIWNALVNLYARCGRIREAFSSFEEIE 508
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/437 (33%), Positives = 245/437 (56%), Gaps = 42/437 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM----------- 92
+V +L Y L I++A K+F++MP K+ I+W +++ A G++
Sbjct: 265 NVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMS 324
Query: 93 --------------------DHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
D A ++ D M + D +N MISGY + G + A +F +
Sbjct: 325 FNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQR 384
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P KD+VSWN++I Y G+M KA +F++M +N ++WN++++G++++ +++ + F
Sbjct: 385 MPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHF 444
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
M+ G + D+ T S L ACANL L G ++H +G ++ A ALI YAKC
Sbjct: 445 MLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKC 504
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G I ++ ++F + KD+ WNA+I G A +G G A+ + EM + V+ D++TF+G+L
Sbjct: 505 GRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGIL 564
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
SACSHAGL+ EG F M K++ + EHY CMVDLLGRA L+ A EL++ M +P
Sbjct: 565 SACSHAGLIDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPN 624
Query: 373 ESILGALLSACVIHQDLEI----GDRVAKMVCAK-SNYLSDGELMMFANLYASCGQWEEA 427
+ GALL AC +H++ E+ +R++++ K SNY+ + +N+ A G+W+E+
Sbjct: 625 AGVWGALLGACHMHKNHELAQLAAERLSELEPRKASNYV------LLSNISAEAGKWDES 678
Query: 428 NRWRNMMNDTGIVKTAG 444
+ R + + G+ K G
Sbjct: 679 EKARASIKEKGVNKPPG 695
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 187/389 (48%), Gaps = 31/389 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y DDA K+ +MP D+++WNS L G+M A++ D M +KD+T
Sbjct: 147 NAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEM-VKDMT 205
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N+M++G+ R G +++A F K+ + +V+SW +L+ Y AG + A ++F +M +N
Sbjct: 206 SWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERN 265
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+ WN M+ GY+ E LFDEM N ++ T+++S A G L+ +
Sbjct: 266 VVAWNVMLDGYVHLSPIEEACKLFDEMPIKNS----ISWTTIISGLARAGKLQEAKDLLD 321
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ N +A A TAL+ Y + + + +F +V D CWN MI G G
Sbjct: 322 KMSFNCVA----AKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEE 377
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM- 347
A+ L M + D +++ +++ + G + + +F RM + V+ G +
Sbjct: 378 AMLLFQRMPNK----DMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQ 433
Query: 348 ----VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
VD L L+ R + S + L AC L +G ++ ++ +S
Sbjct: 434 NDRFVDALHHFMLMRRGTNRADW-------STYASCLRACANLAVLHVGRQLHNLLV-RS 485
Query: 404 NYLSD---GELMMFANLYASCGQWEEANR 429
+++D G ++ + YA CG+ EA +
Sbjct: 486 GHINDSFAGNALI--STYAKCGRILEAKQ 512
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 138/272 (50%), Gaps = 14/272 (5%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID+A +F+ MP ++ ++WN+M+ A + G++ A L D MP++D S+ +M+S YAR
Sbjct: 65 IDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARG 124
Query: 121 GKIHSARYIFDKVPA-KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G + AR + D++P K +N++I Y G + A ++ ++M ++++WN+ + G
Sbjct: 125 GDLELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGL 184
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+S + V FDEM VK D + +L+ G L + + N
Sbjct: 185 TQSGEMVRAVQFFDEM----VK-DMTSWNLMLAGFVRTGDLNAASSFFAKIE----SPNV 235
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ L++ Y + G I + ++F + ++V WN M+ G A KL EM
Sbjct: 236 ISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMP-- 293
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
+K + I++ ++S + AG +QE +L +M
Sbjct: 294 -IK-NSISWTTIISGLARAGKLQEAKDLLDKM 323
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 154/335 (45%), Gaps = 20/335 (5%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N L A GQ+ A +L D MPL++ ++N M+S AR G+I AR +FD +P ++ V
Sbjct: 22 NKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTV 81
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
SWN++I A ++ G + A +F +M V++ +W MV+ Y R D+ D M
Sbjct: 82 SWNAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRMPGDK 141
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
Y +++S A G + ++ L S A L + G + +++
Sbjct: 142 CTACY---NAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGL----TQSGEMVRAV 194
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+ F+ VKD+ WN M+ G G AA ++ V I+++ LL+ AG
Sbjct: 195 Q-FFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNV----ISWVTLLNGYCRAG 249
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT---ESIL 376
+ + +LF RM + R + + M+D ++ A +L + MP + + +I+
Sbjct: 250 RIADARDLFDRMPE-----RNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTII 304
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
L A + + ++ D+++ A L G L
Sbjct: 305 SGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYL 339
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 16/209 (7%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
AD ++ L+A L+ +G LH +++G + AL+ Y I +A +
Sbjct: 453 RADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQ 512
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGK 122
+F++M KDI++WN+++D +AS GQ A+ + M D +F ++S + G
Sbjct: 513 IFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGL 572
Query: 123 IHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMV 176
I + F + + ++ + ++ AG++ +A E+ + M ++ N W ++
Sbjct: 573 IDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALL 632
Query: 177 ------TGYLRSQLYIEVVDLFDEMKAGN 199
+ +QL E + + KA N
Sbjct: 633 GACHMHKNHELAQLAAERLSELEPRKASN 661
>gi|2827553|emb|CAA16561.1| predicted protein [Arabidopsis thaliana]
gi|7269122|emb|CAB79231.1| predicted protein [Arabidopsis thaliana]
Length = 889
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 265/485 (54%), Gaps = 38/485 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ +++ +L+A G + + G +H Q +K G CG VYVQT L+ +Y L
Sbjct: 364 MHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGY 423
Query: 61 I-------------------------------DDAFKVFEKMPEKDIIAWNSMLDAFASC 89
I D+A +VF+K+PEKD ++WN ++ ++A
Sbjct: 424 IELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISSYAKK 483
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
G M +A L MPLK S+NI+I GY ++ AR FD +P K+ VSW ++I YT
Sbjct: 484 GDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYT 543
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN--VKPDYLTV 207
G+++ A E+F+ M K+ + ++ M+ Y ++ + + LF +M N ++PD +T+
Sbjct: 544 KLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITL 603
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+SV+SA + LG+ G + Y T++G+ + +T+LID+Y K G ++ ++F
Sbjct: 604 SSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNK 663
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
KD ++AMI+G ++G A L M + + + +TF GLLSA SH+GLVQEG +
Sbjct: 664 KDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKC 723
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F+ M KD + +HYG MVD+LGRA L+ A ELI++MP +P + GALL A +H
Sbjct: 724 FNSM-KDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHN 782
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK---TAG 444
++E G+ +A C K G L A +Y+S G+W++A R+ + + + AG
Sbjct: 783 NVEFGE-IACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDSIKEKKLSVGSFLAG 841
Query: 445 SSVIE 449
S +I+
Sbjct: 842 SKIID 846
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+W +V + + + E VD++ +M + P VTSVL AC + ++ G IH
Sbjct: 339 FSWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQ 398
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY-GYA 288
A NGL + T L+ +Y++ G IE + + F K+ WN++ LHGY
Sbjct: 399 ALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSL-----LHGYLESG 453
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
L + D + D +++ ++S+ + G + C LFS M
Sbjct: 454 ELDEARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAM 496
>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 604
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/392 (38%), Positives = 236/392 (60%), Gaps = 5/392 (1%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A ++F++MP +D++++NSML ++A+ G M A +L D MP +DV ++N M++GYAR
Sbjct: 170 LPSARRLFDQMPHRDLVSYNSMLSSYAAVGDMAGAGRLFDEMPERDVVTWNTMLAGYARG 229
Query: 121 G-KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G + SAR +FD +P +DVVSWNS++ Y AG++ A MF M ++ +WN ++ Y
Sbjct: 230 GADMASARAVFDAMPERDVVSWNSMLDGYAQAGDVVMAWAMFDGMPRRSAASWNVVLALY 289
Query: 180 LRSQLYIEVVDLFDEMKAGNVK-PDYLTVTSVLSACANLGSLETGARIH--VYATDNGLA 236
R + + E + LFD M A V P+ T SVL+AC +LG LE G +H V + L
Sbjct: 290 ARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERWDRLV 349
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ TAL+ MYAKCG++E + E+F + V WN+MI+G LHG AL+L EM
Sbjct: 350 PDVLLLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQSEKALELFLEM 409
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
S + ++ TFI +LS+C+H GLV EG F RM + +G K EH+GCM+DLLGRA L
Sbjct: 410 EKSGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYGFEPKAEHFGCMMDLLGRAGL 469
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L + LI+ + + + ++ G ++SA + ++G+ V K + + G ++ +N
Sbjct: 470 LKDSENLIQNLQGKASPALWGIMMSASQTQNNYKLGEFVGKKLI-EMKPAEFGPYLLLSN 528
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+YAS G+W + + R +M + G K G S+I
Sbjct: 529 IYASEGRWGDVEKVREVMKENGAEKYVGLSLI 560
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 1 MQELGVHADN-YSFPLLLKAAGILSSSCIGLMLHGQTIKT--GFCGHVYVQTALLKMYGS 57
M +GV N +F +L A G L G +HG + V + TALL MY
Sbjct: 305 MMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERWDRLVPDVLLLTALLTMYAK 364
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIM 113
++ A ++F+ M E+ + +WNSM+ + GQ + A++L M P + T+F +
Sbjct: 365 CGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQSEKALELFLEMEKSGPRPNETTFICV 424
Query: 114 ISGYARIGKIHSARYIFDKV 133
+S A G + + FD++
Sbjct: 425 LSSCAHGGLVLEGWWCFDRM 444
>gi|414878289|tpg|DAA55420.1| TPA: hypothetical protein ZEAMMB73_457942 [Zea mays]
Length = 534
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 237/449 (52%), Gaps = 32/449 (7%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+++ L + +G+ +HG + G +V+ AL+ MYG+ + DA +VF
Sbjct: 100 VVRCCSALRAVRVGIQVHGFLVNAGLGRAEHVRAALVDMYGNHGRVADARRVF------- 152
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA 135
D M V N M++ Y R G + S R +FD++
Sbjct: 153 ------------------------DEMSATSVVLGNTMVACYVRAGDVESGRVVFDRMVE 188
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+D++SWN+L++ Y G A E+F++M +NV +WN + Y + + + + V +F+ M
Sbjct: 189 RDLISWNTLMMGYLRQGGAGVARELFEEMPDRNVNSWNMAIAAYSQERSWADAVAVFNRM 248
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
+ +PD T+ ++SACA LGSL ++H + N H +LIDMYAKCGSI
Sbjct: 249 RLARFQPDPATMAVLMSACAQLGSLSVARQVHGILRKGCVEMNFHVLNSLIDMYAKCGSI 308
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
Q+ +F ++ +KD +N MI LA HG+G AL++ EM+ ++ D +T +G+LSAC
Sbjct: 309 SQAHLLFVETHLKDTVSYNVMICALARHGHGRDALQVFDEMSKERLQPDAVTLLGVLSAC 368
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
+HAGLV +G F M+ ++ + + +HY CMVDL GRA L+ A EL AMP EP +
Sbjct: 369 AHAGLVHDGKFYFESMKTNYAIEQSPDHYACMVDLYGRAGLIKEAYELARAMPMEPHAGV 428
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
GAL++AC H ++E+G A+ + A + G ++ AN A QWE M
Sbjct: 429 WGALINACRKHCNVEVGKVAARELIAIEPR-NPGTYVLLANTLARGQQWEFVETVWQSMR 487
Query: 436 DTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
GI KTAG S +EV H+FL G H
Sbjct: 488 GKGIEKTAGCSWLEVENVVHEFLMGESSH 516
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 27/309 (8%)
Query: 132 KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR-----SQLYI 186
+PA+ VS LI + + G + +NV W + Y R +
Sbjct: 19 PLPARAAVS---LIASSHSPGHARAVFDNAVPTACENVYLWTATIAAYARHASSSPSVAE 75
Query: 187 EVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ LF M + G +P+ T +SV+ C+ L ++ G ++H + + GL H AL
Sbjct: 76 GALTLFRLMLRHGVPRPNAFTASSVVRCCSALRAVRVGIQVHGFLVNAGLGRAEHVRAAL 135
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
+DMY G + + VF + V N M+ G + + D V+ D
Sbjct: 136 VDMYGNHGRVADARRVFDEMSATSVVLGNTMVACYVRAGDVESGRVVF----DRMVERDL 191
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
I++ L+ G ELF M R + + + + R A+ +
Sbjct: 192 ISWNTLMMGYLRQGGAGVARELFEEMPD-----RNVNSWNMAIAAYSQERSWADAVAVFN 246
Query: 366 AM---PFEPTESILGALLSACVIHQDLEIGDRVAKMV---CAKSNYLSDGELMMFANLYA 419
M F+P + + L+SAC L + +V ++ C + N+ L+ ++YA
Sbjct: 247 RMRLARFQPDPATMAVLMSACAQLGSLSVARQVHGILRKGCVEMNFHVLNSLI---DMYA 303
Query: 420 SCGQWEEAN 428
CG +A+
Sbjct: 304 KCGSISQAH 312
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D + +L+ A L S + +HG K + +V +L+ MY I A +F
Sbjct: 256 DPATMAVLMSACAQLGSLSVARQVHGILRKGCVEMNFHVLNSLIDMYAKCGSISQAHLLF 315
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIH 124
+ KD +++N M+ A A G A+++ D M + D + ++S A G +H
Sbjct: 316 VETHLKDTVSYNVMICALARHGHGRDALQVFDEMSKERLQPDAVTLLGVLSACAHAGLVH 375
Query: 125 SARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTG 178
++ F+ + + + ++ Y AG +++A E+ + M ++ + W ++
Sbjct: 376 DGKFYFESMKTNYAIEQSPDHYACMVDLYGRAGLIKEAYELARAMPMEPHAGVWGALINA 435
Query: 179 YLRSQLYIEV 188
R +EV
Sbjct: 436 -CRKHCNVEV 444
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/475 (34%), Positives = 256/475 (53%), Gaps = 15/475 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + GV ++ +L A G L++ G +H Q +++ V V TAL KMY
Sbjct: 237 MLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGA 296
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMIS 115
+ DA +VFE +P +D+IAWN+M+ GQ++ A + M LK D ++ ++S
Sbjct: 297 VKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRM-LKECVAPDRVTYLAILS 355
Query: 116 GYARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
AR G +IH AR + D + DV N+LI Y+ AG M+ A ++F +M ++V
Sbjct: 356 ACARPGGLACGKEIH-ARAVKDGL-VSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDV 413
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++W +V GY +E F +M V+ + +T VL AC+N +L+ G IH
Sbjct: 414 VSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAE 473
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
G+ ++ AL+ MY KCGS+E ++ V +DV WN +I GLA +G G A
Sbjct: 474 VVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEA 533
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L+ M ++ + TF+ ++SAC LV+EG F+ M KD+G+ +HY CMVD
Sbjct: 534 LQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVD 593
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
+L RA L A ++I MPF+P+ ++ GALL+AC H ++EIG++ A+ C K + G
Sbjct: 594 ILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQ-CLKLEPQNAG 652
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ + +YA+ G W + + R +M + G+ K G S IEV G H F+AG H
Sbjct: 653 TYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSH 707
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 182/376 (48%), Gaps = 9/376 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ + G D+Y + LL++ +G +H ++ G +VY+ LLK+Y
Sbjct: 35 LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+++A ++F+K K +++WN M+ +A G A L LM + D +F ++S
Sbjct: 95 VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA 154
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ ++ R + +V A + N+LI Y G + A +F M ++ ++W
Sbjct: 155 CSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 214
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
T+ Y S E + + M V+P +T +VLSAC +L +LE G +IH +
Sbjct: 215 TTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVE 274
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ S+ +TAL MY KCG+++ + EVF +DV WN MI GL G A +
Sbjct: 275 SEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGM 334
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M CV D +T++ +LSAC+ G + G E+ +R KD G+ + ++++
Sbjct: 335 FHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGNALINMYS 393
Query: 353 RARLLDRAIELIEAMP 368
+A + A ++ + MP
Sbjct: 394 KAGSMKDARQVFDRMP 409
>gi|255564351|ref|XP_002523172.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537579|gb|EEF39203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/491 (32%), Positives = 269/491 (54%), Gaps = 50/491 (10%)
Query: 3 ELG-VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
ELG + D Y++PLLL A LS + +G ++H IK G +YVQ ALL YGS++ +
Sbjct: 76 ELGSFYPDRYTYPLLLNACSRLSFASMGQLVHTHLIKIGLDSDIYVQNALLHFYGSIKQL 135
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDA-FASCGQ----MDHAMKLID---------------- 100
+ A +F+KM E+DI +WN+ + A +AS MD +LI
Sbjct: 136 NYARLLFDKMYERDITSWNTFMGASYASSNSVIDLMDLFKRLISEGVGADKITLVILFSA 195
Query: 101 ------------------------LMPLKDVTSFNIMISGYARIGKIHSARYIFDKV-PA 135
L+ + +V+ N +++ Y + ++ +A +FD++
Sbjct: 196 FAQAQCDESLEYGTAVHSCAIKMGLVSMLNVS--NALLNMYTKYRQMDAASRVFDEMGSK 253
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
KD VS LI Y G ++ A ++F ++ K+++ WN M+ GY++++ I+ ++LF +M
Sbjct: 254 KDAVSHAILINGYVEKGLIDLASDIFYQIFDKDLVLWNVMLHGYIKAKRPIDALELFKKM 313
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
+ PD T+ +L+ACA+L L+ G +H++ N + + TALIDMY KCGS
Sbjct: 314 DNEGLIPDENTMVGILAACASLSDLQYGRVVHMFINRNDIKQDIFVKTALIDMYFKCGSP 373
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
E++L FYK + KDVF W A+I GLA +GYG AL L +M + ++ ++ TF+ L++C
Sbjct: 374 EEALVTFYKMEYKDVFTWTAVIEGLANNGYGNVALNLFKQMEEQGIQPNEATFVSALTSC 433
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
H+GLV+EGC++F +M + + + + EH+GC++D+L RA LL +A E ++ + E +
Sbjct: 434 RHSGLVKEGCQMFRKMVEVYKLQPRFEHFGCLIDVLSRAGLLAQAYEFVKLLRPEERLAA 493
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
+LSAC+ + + ++G++ A + S + +++ +N YA GQWE + R M
Sbjct: 494 YKIVLSACIKYLEFDVGEKAALEMAELSPQSCEMHILL-SNFYALAGQWERVAKTRRTMK 552
Query: 436 DTGIVKTAGSS 446
K G S
Sbjct: 553 RLNTRKEPGIS 563
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Query: 171 TWNTMVTGYLRSQLYIE---VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
TWN ++ Y ++ I+ V + F E+ G+ PD T +L+AC+ L G +H
Sbjct: 50 TWNCLIRAYSKTHTPIKSILVSNYFIEL--GSFYPDRYTYPLLLNACSRLSFASMGQLVH 107
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ GL S+ + AL+ Y + + +F K +D+ WN + G Y
Sbjct: 108 THLIKIGLDSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFM------GASY 161
Query: 288 AA-------LKLLGEMNDSCVKADDITFIGLLSACSHA 318
A+ + L + V AD IT + L SA + A
Sbjct: 162 ASSNSVIDLMDLFKRLISEGVGADKITLVILFSAFAQA 199
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ D + +L A LS G ++H + ++V+TAL+ MY
Sbjct: 313 MDNEGLIPDENTMVGILAACASLSDLQYGRVVHMFINRNDIKQDIFVKTALIDMYFKCGS 372
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
++A F KM KD+ W ++++ A+ G + A+ L M
Sbjct: 373 PEEALVTFYKMEYKDVFTWTAVIEGLANNGYGNVALNLFKQM 414
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/450 (34%), Positives = 254/450 (56%), Gaps = 17/450 (3%)
Query: 28 IGLMLHGQTIKTGFCGH--VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA 85
+G +H I+ H V TALL MY + A ++F + +K +++W +M+
Sbjct: 213 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 272
Query: 86 FASCGQMDHAMKLI------DLMPLKDVTSFNIMI----SGYARIGK-IHSARYIFDKVP 134
+++ KL ++ P ++T ++++ +G ++GK +H+ YI
Sbjct: 273 CIRSNRLEEGTKLFIRMQEENIFP-NEITMLSLIVECGFTGALQLGKQLHA--YILRNGF 329
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
+ + +L+ Y ++ A +F ++V+ W M++ Y ++ + +LFD+
Sbjct: 330 SVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQ 389
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M+ V+P +T+ S+LS CA G+L+ G +H Y + + TAL+DMYAKCG
Sbjct: 390 MRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGD 449
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
I + +F ++ +D+ WNA+I G A+HGYG AL + EM VK +DITFIGLL A
Sbjct: 450 INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHA 509
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
CSHAGLV EG +LF +M FG+ ++EHYGCMVDLLGRA LLD A E+I++MP +P
Sbjct: 510 CSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTI 569
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
+ GAL++AC +H++ ++G+ A + + + G ++ +N+YA+ +W +A R M
Sbjct: 570 VWGALVAACRLHKNPQLGELAATQLL-EIEPENCGYNVLMSNIYAAANRWSDAAGVRKTM 628
Query: 435 NDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G SVIEVNG+ H+FL G H
Sbjct: 629 KTVGMKKEPGHSVIEVNGTVHEFLMGDQSH 658
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 173/335 (51%), Gaps = 10/335 (2%)
Query: 10 NYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFE 69
N+ P +LKA G +S + +G +HG +K G V+V AL+ MYG C++ A VF+
Sbjct: 94 NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYA-----RI 120
KM E+D+++W++M+ + + + D A++LI M V + M++ +A R+
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213
Query: 121 GKIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
GK A I + V + +L+ Y G + A ++F + K V++W M+ G
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+RS E LF M+ N+ P+ +T+ S++ C G+L+ G ++H Y NG + +
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TAL+DMY KC I + +F +Q +DV W AM+ A A L +M S
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
V+ +T + LLS C+ AG + G + S ++K+
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKE 428
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 139/299 (46%), Gaps = 22/299 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE + + + L+ G + +G LH ++ GF + + TAL+ MYG
Sbjct: 289 MQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSD 348
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI------ 114
I +A +F+ +D++ W +ML A+A +D A L D M V + I
Sbjct: 349 IRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 408
Query: 115 ---SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+G +GK +HS YI + D + +L+ Y G++ AG +F + + +++
Sbjct: 409 CAVAGALDLGKWVHS--YIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDIC 466
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR----- 225
WN ++TG+ E +D+F EM+ VKP+ +T +L AC++ G + G +
Sbjct: 467 MWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKM 526
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
+H + GL ++D+ + G ++++ E+ +K + W A++ LH
Sbjct: 527 VHTF----GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 581
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 256/463 (55%), Gaps = 19/463 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G + + LL A G + + GL ++ + + G V ++ AL+ MY C
Sbjct: 214 MQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGC 273
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+ DA+K F+ MP ++ +WN+++D F G+ A+ + + M + DV + ++S
Sbjct: 274 MSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLST 333
Query: 117 YARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
YA++G + RY+ + + D++ NSLI Y G+M A +F+ M +++++W
Sbjct: 334 YAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSW 393
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
MV GY++ + +LFD+MK +V + + S+LSAC+ LG+L+ G IH Y +
Sbjct: 394 TAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKE 453
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ ++ +AL+DMYAKCG I+ + E+F + + K WNAMI GLA G G A+ L
Sbjct: 454 KSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVAL 513
Query: 293 ---LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L ++ D K D IT +L AC+H G+V EG F+ M G+ EHYGC+VD
Sbjct: 514 FEQLLKLRDP--KPDAITLKVVLCACTHVGMVDEGLHYFNLMLT-LGIVPDNEHYGCIVD 570
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC--AKSNYLS 407
LLGRA LLD A I+ MP +P I G+LL+AC +H +E+G + + + A ++
Sbjct: 571 LLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPNDV-- 628
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
G ++ +NL+A GQW++ + R MM + K+ G S I+V
Sbjct: 629 -GAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPGHSSIQV 670
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 202/395 (51%), Gaps = 15/395 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSS---SCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS 57
M+ GV DNY+ + +++ +S G +H + GF ++V + L+ YG+
Sbjct: 110 MRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGA 169
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI--- 114
+ ++DA KVFE+M E+D+++W M+ AFA CGQ D+ ++ +D M + I I
Sbjct: 170 SKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISL 229
Query: 115 -SGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
S ++ + +++ +V DV N+LI Y G M A + FK M ++N
Sbjct: 230 LSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNT 289
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+WNT++ G++++ + E + +F+EM + V PD +T+ SVLS A LG L+ G +H Y
Sbjct: 290 KSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNY 349
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
D+ + + +LI+MYAKCG + + +F +D+ W AM+ G A
Sbjct: 350 IKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTA 409
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L +M V A ++ + LLSACS G + +G E+ S + K+ V + +VD
Sbjct: 410 FNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYI-KEKSVRTDMWLESALVD 468
Query: 350 LLGRARLLDRAIELIEAMPFEPT---ESILGALLS 381
+ + +D A E+ M + T +++G L S
Sbjct: 469 MYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLAS 503
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 146/307 (47%), Gaps = 14/307 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD---AFKVFEKMPEKDIIAWNSMLDAFAS 88
LHG+ ++ V L+ + S D A KVF++M + I WN M+ + S
Sbjct: 37 LHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNS 96
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA---RYIFDKVPA--------KD 137
C A++L M V+ N ++ A+ ++ R D V A D
Sbjct: 97 CHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASD 156
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
+ + LI Y + +E A ++F++M ++V++W M++ + + + V+ DEM++
Sbjct: 157 LFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQS 216
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KP+ +T+ S+LSAC + +++ G ++ + G+ ++ ALI MY KCG +
Sbjct: 217 EGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSD 276
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ + F +++ WN +I G +G AL + EM V D IT + +LS +
Sbjct: 277 AWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQ 336
Query: 318 AGLVQEG 324
G +Q+G
Sbjct: 337 LGDLQQG 343
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 172/525 (32%), Positives = 267/525 (50%), Gaps = 83/525 (15%)
Query: 1 MQELGVHADNYSFPLL---LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS 57
M +G + +F L +A G L + G LHG +KTG VQ+ LL MY
Sbjct: 226 MHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSK 285
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL---------------- 101
++A + F ++ KDII+W SM+ A++ +M A + ID+
Sbjct: 286 CGNPEEAHRSFCEVLNKDIISWTSMISAYS---RMGWATECIDMFWEMLVSGIYPDGIVI 342
Query: 102 ----------MPLKDVTSF----------------NIMISGYARIGKIHSARYIFDKVPA 135
M + + +F N ++S Y + G + A F +V
Sbjct: 343 SCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNE 402
Query: 136 KDVVSW--------------------------------NSLILAYTNAGEMEKAGEMFKK 163
++ +W NSLI Y +G + A +F +
Sbjct: 403 QNFEAWNLMVSGYGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCR 462
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
+ ++++TWNT+++ Y + E + L+D+M ++KP+ T+ SVLSAC++L SLE G
Sbjct: 463 -IPRDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEG 521
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
++H Y N TALIDMYAKCG +E+S E+F +DV WN MI G +H
Sbjct: 522 EKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMH 581
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G +A++ +M +S K + +TF+ +LSAC+HAGLV+EG LF +M+ D+ V L+H
Sbjct: 582 GDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQ-DYSVAPNLKH 640
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
Y CMVDLLGR+ L A L+ +MP P + GALLS+C IH ++E+G R+AK S
Sbjct: 641 YACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHA-IDS 699
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+ +DG +M +N+Y+S G+WEEA + R +M + G+ K G S +
Sbjct: 700 DVENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTGWSAV 744
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 147/307 (47%), Gaps = 12/307 (3%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L H I +G+ ++++ + L+ +Y S + ++F+++P +D WNS++ A S
Sbjct: 52 LQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNSIIKAHFSN 111
Query: 90 GQMDHAMKLIDLM----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS-- 143
G+ A+ M L + + ++++ A + ++ R I V + S +S
Sbjct: 112 GEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSKLGLFSGSSAV 171
Query: 144 ---LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR---SQLYIEVVDLFDEMKA 197
+ Y+ G +E+A +F ++L ++V+ W +V G ++ S++ +E + +
Sbjct: 172 GSSFVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLECLCEMHRIGG 231
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+P++ T+ AC NLG+L G +H G+ + + L+ MY+KCG+ E+
Sbjct: 232 DGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEE 291
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ F + KD+ W +MI + G+ + + EM S + D I +LS+ S+
Sbjct: 292 AHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSN 351
Query: 318 AGLVQEG 324
+ V E
Sbjct: 352 SMRVFEA 358
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 9/212 (4%)
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
+ SL+T + H + +G ++N + LI +YA S E+F + +D F WN+
Sbjct: 44 QISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNS 103
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
+I +G AL M S + T ++++C+ LV G + + K
Sbjct: 104 IIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSK-L 162
Query: 336 GVTRKLEHYG-CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
G+ G V + + +L+ A + + + F + AL+ CV + + ++G
Sbjct: 163 GLFSGSSAVGSSFVYMYSKCGVLEEAYGVFDEILFRDVVA-WTALVIGCVQNGESKMG-- 219
Query: 395 VAKMVCAKSNYLSDGELMMFANL---YASCGQ 423
+ +C DGE F L + +CG
Sbjct: 220 -LECLCEMHRIGGDGERPNFRTLEGGFQACGN 250
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 163/481 (33%), Positives = 255/481 (53%), Gaps = 19/481 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + ++FP LK+ LS +G HGQ K G +VQT L+ MY
Sbjct: 40 MLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSL 99
Query: 61 IDDAFKVFEK--MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIM 113
+D+A KVFE+ K + +N+++ + S + A+ L M P+ VT ++
Sbjct: 100 VDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLI 159
Query: 114 ISGYARIG-----KIHSA--RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
+ + I +H + +Y FD DV N I Y G + A ++F +M V
Sbjct: 160 PACVSPINLELGSSLHCSTLKYGFDS----DVSVVNCFITMYMKCGSVNYAQKLFDEMPV 215
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
K +I+WN MV+GY ++ L V++L+ M V PD +T+ VLS+CANLG+ G +
Sbjct: 216 KGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEV 275
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+G SNP ALI+MYA+CG++ ++ VF + + W A+I G +HG+G
Sbjct: 276 EFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHG 335
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A++L EM S ++ D F+ +LSACSHAGL +G E F M++++ + EHY C
Sbjct: 336 EIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSC 395
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
MVDLLGRA L A LIE+MP +P ++ GALL AC IH+++E+ + + V +
Sbjct: 396 MVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERV-IELEPE 454
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
+ G ++ +N+Y++ + R R MM + + K G S +E+ G H F+ G HL
Sbjct: 455 NIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQ 514
Query: 467 N 467
+
Sbjct: 515 S 515
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WNT + + +++ + L+ +M +P+ T L +CA L G++ H T
Sbjct: 17 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS--QVKDVFCWNAMILGLALHGYGYAA 289
G P T LI MY K ++ + +VF ++ K C+NA++ G + A
Sbjct: 77 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+ L +MN+ V + +T +GL+ AC ++ G L K +G + C +
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK-YGFDSDVSVVNCFIT 195
Query: 350 LLGRARLLDRAIELIEAMP 368
+ + ++ A +L + MP
Sbjct: 196 MYMKCGSVNYAQKLFDEMP 214
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 155/407 (38%), Positives = 241/407 (59%), Gaps = 14/407 (3%)
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL--MPLK-----DVTSFNIMISGYAR 119
+F P D + +L A C + H +K +L LK V N +I Y
Sbjct: 78 MFRHGPPPDTYTFPFLLKA---CSALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYGS 134
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
++ SAR +FD + +D+ SW +L+ Y N+ +E A ++F +M ++V++++ M+ Y
Sbjct: 135 NSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAY 194
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASN 238
+R + E ++LF E+ + ++P V SVL ACANLG+L+ G ++ + + G +
Sbjct: 195 VRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVD 254
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
TALIDM+ KCGSIE +L VF ++ K V W AM+ GLA+HG G ++ +M D
Sbjct: 255 SRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVD 314
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
S +K D++TF+ LLS CSH+GLV EG F RME DFGV +EH+GC+VDLLGRA L+D
Sbjct: 315 SGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLID 374
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANL 417
+A++LI MPFEP +I GALL+AC +++++E+G+ A+ + + +G L M +L
Sbjct: 375 QAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAAQWLIKDEPW--NGALYMTLLSL 432
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
Y G+W+E + + M + G K G S+IEV G ++F+ G H
Sbjct: 433 YREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGICYEFVVGDKSH 479
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 42/315 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D Y+FP LLKA L+ G LH Q +K G GHV+V+ +L+ +YGS +D A
Sbjct: 82 GPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYGSNSRMDSA 141
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+VF+ M +DI +W ++L +A+ ++ A K+ D MP + V S++ M++ Y R +
Sbjct: 142 RRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFR 201
Query: 125 SARYIFDKV------P----------------AKDVVSW------------------NSL 144
A +F ++ P A DV W +L
Sbjct: 202 EALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATAL 261
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I + G +E A +F+ K+V W M++G L ++++ F++M +KPD
Sbjct: 262 IDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDE 321
Query: 205 LTVTSVLSACANLGSLETGA-RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T ++LS C++ G + G +D G+ ++D+ + G I+Q++++
Sbjct: 322 VTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLIS 381
Query: 264 KSQVK-DVFCWNAMI 277
+ + + W A++
Sbjct: 382 EMPFEPNAAIWGALL 396
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 39/288 (13%)
Query: 142 NSLILAYTNAGE-MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
LI YT++ + A +F + + +NTM Y S + + L M
Sbjct: 24 RKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFRVYAASPTPLHALLLHRHMFRHGP 83
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD T +L AC+ L L G +H A GL + +LI +Y ++ +
Sbjct: 84 PPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYGSNSRMDSARR 143
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF +D+ W ++ A AA K+ EM + V +++ +L+A
Sbjct: 144 VFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSV----VSYSAMLAAYVRGNR 199
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
+E ELF + F V EP++S + ++L
Sbjct: 200 FREALELFREL---FSVK------------------------------IEPSDSCVMSVL 226
Query: 381 SACVIHQDLEIGDRVAKMVC-AKSNYLSDGELMMFANLYASCGQWEEA 427
AC L++G V VC +K +Y+ +++ CG E A
Sbjct: 227 CACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHA 274
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 220/366 (60%), Gaps = 3/366 (0%)
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
++F ++D NS++ ++ CG +D A ++ D M K +TS+N+MIS Y +I S
Sbjct: 144 RLFRLGLDQDCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQINDFDS 203
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
A + +P K+VVSWN LI Y G++E A +F++M ++ ++WN+M+ GY++ + Y
Sbjct: 204 ADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDY 263
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ LF EM+ NV+ +T+ SVL ACA G+LE G +IH+ + + AL
Sbjct: 264 ARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNAL 323
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG--EMNDSCVKA 303
+DMYAKCG + + EVF + ++K + CWNAMI+ LA+HGY AL+L EM+ +
Sbjct: 324 VDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARP 383
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+ +TFIG+L ACSH GLV EG + F+RM ++ + ++HYGCMVDLL R LL A +
Sbjct: 384 NRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHM 443
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I+ MPFE + LL AC +H +++ + + + K L DG+ ++ +N+YA +
Sbjct: 444 IKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQL-GKMEPLRDGDYVLLSNIYAEAQR 502
Query: 424 WEEANR 429
W + R
Sbjct: 503 WNDVER 508
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/344 (19%), Positives = 135/344 (39%), Gaps = 86/344 (25%)
Query: 1 MQELGVHADNYSFPLLLKAAGI-------------LSSSCIGLMLHGQTIKTGFCGHVYV 47
M + +D++ +P LKA L +C G +H + + G ++
Sbjct: 97 MHRKDIKSDHFMYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFI 156
Query: 48 QTALLKMYGSLRCIDDAFKVFEKM-------------------------------PEKDI 76
Q +L+ +Y +D A +VF++M P K++
Sbjct: 157 QNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNV 216
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK---- 132
++WN ++ + G+++ A + MP +D S+N MI+GY +I A +F +
Sbjct: 217 VSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIA 276
Query: 133 -VPAKDVVSW----------------------------------NSLILAYTNAGEMEKA 157
V A D+ N+L+ Y G + A
Sbjct: 277 NVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLA 336
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD--EMKAGNVKPDYLTVTSVLSACA 215
E+F ++ +K++ WN M+ E + LF EM +P+ +T VL AC+
Sbjct: 337 WEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACS 396
Query: 216 NLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+ G ++ G + + + + + ++D+ ++CG ++++
Sbjct: 397 HKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEA 440
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 128/302 (42%), Gaps = 31/302 (10%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
L+ + G + A +F+ + N NTM+ Y +S I+ + L++ M ++K D+
Sbjct: 47 FLSLSPLGSLVYAQAIFEDTTMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDH 106
Query: 205 LTVTSVLSACA-----NLGSLE--------TGARIHVYATDNGLASNPHATTALIDMYAK 251
L ACA N G ++ GA IH GL + +L+ +Y++
Sbjct: 107 FMYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQ 166
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
CG ++ + VF + K + WN MI +A L+G M V +++ L
Sbjct: 167 CGFLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNV----VSWNML 222
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF-- 369
++ G +++ +F M + V+ + M+ + + RA+ L M
Sbjct: 223 IARYIRLGKIEDAKAVFQEMPERDAVS-----WNSMIAGYVQIKDYARALALFREMEIAN 277
Query: 370 -EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQ---- 423
E T+ L ++L AC LEIG ++ + + Y +G L ++YA CG
Sbjct: 278 VEATDITLISVLGACAETGALEIGRKI-HLSLKQREYKIEGYLSNALVDMYAKCGHLNLA 336
Query: 424 WE 425
WE
Sbjct: 337 WE 338
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 111/245 (45%), Gaps = 24/245 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V A + + +L A + IG +H + + Y+ AL+ MY
Sbjct: 273 MEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGH 332
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-------KDVTSFNIM 113
++ A++VF ++ K I WN+M+ + A G + A++L M + VT ++
Sbjct: 333 LNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVL 392
Query: 114 ISGYARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK- 167
I+ + G + R F+++ + D+ + ++ + G +++A M K M +
Sbjct: 393 IACSHK-GLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEA 451
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDE--MKAGNVKP----DYLTVTSVLSACANLGSLE 221
N + W T++ G R + VDL +E + G ++P DY+ ++++ + +E
Sbjct: 452 NSVLWRTLL-GACRVHHH---VDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVE 507
Query: 222 TGARI 226
++I
Sbjct: 508 RASKI 512
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/469 (34%), Positives = 251/469 (53%), Gaps = 66/469 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M ++G++ D+ ++P L KA L +G+ +HG IK+GF
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGF------------------- 41
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
E D NS++ + SCG + +A
Sbjct: 42 ------------EIDRFVANSLIHMYGSCGDIVYA------------------------- 64
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
R +FD P K++VSWNS++ Y G ++ A +F M ++V +W+ ++ GY
Sbjct: 65 ------RKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYA 118
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+S Y + + +F++M+ K + +T+ SVL ACA+LG+L+ G +H Y DNG N
Sbjct: 119 KSGNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLV 178
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVK--DVFCWNAMILGLALHGYGYAALKLLGEMND 298
T+LIDMYAKCG++E++ VF ++ DV WNAMI GLA HG +L L EM
Sbjct: 179 LRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQI 238
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ +K D+ITF+ LLSAC+H GLV++ +F + K+ G+T K EHY CMVD++ RA +
Sbjct: 239 AGIKPDEITFLCLLSACAHGGLVKQASYVFEGLGKN-GMTPKTEHYACMVDVMARAGQVA 297
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A + + MP EPT S+LGALLS C+ H L++ + + K + + + DG + +N+Y
Sbjct: 298 EAYQFLCQMPLEPTASMLGALLSGCMNHGKLDLAELIGKKLI-ELDPEHDGRYVGLSNVY 356
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
A +W+EA R M G+ KT G S +E++G++H+F+A H S+
Sbjct: 357 AIGRRWDEARIMREAMERRGVKKTPGYSFLEMSGAHHRFIAHDKSHPSS 405
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 159/470 (33%), Positives = 247/470 (52%), Gaps = 46/470 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G DNY++P +LKA + GL++HG +K G +++V L+ MYG
Sbjct: 114 GFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGK------- 166
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
CG + A ++ D M KDV S+N M++GYA +
Sbjct: 167 ------------------------CGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFD 202
Query: 125 SA----RYIFDKVPAKDVVSWNSLI--LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
A R + D D + SL+ +A T++ + ++F + KN+I+WN M+
Sbjct: 203 DALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRV 262
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y+++ L + VDL+ +M+ V+PD +T SVL AC +L +L G RIH Y L N
Sbjct: 263 YMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPN 322
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+LIDMYA+CG ++ + VF + + +DV W ++I + G G A+ L EM +
Sbjct: 323 LLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLN 382
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
S D I F+ +LSACSH+GL+ EG F +M D+ +T ++EHY C+VDLLGRA +D
Sbjct: 383 SGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVD 442
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMF 414
A +I+ MP EP E + LLS+C + +++IG D + ++ +S Y ++
Sbjct: 443 EAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGY-----YVLL 497
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G+W+E R++M I KT G S +E+N H FLAG H
Sbjct: 498 SNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSH 547
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 139/296 (46%), Gaps = 20/296 (6%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ +Y GE ++F +M +NV+ +N M+ Y+ + Y + + +F EM G +PD
Sbjct: 59 LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T VL AC+ +L G IH GL N LI MY KCG + ++ VF
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG---- 319
+ KDV WN+M+ G A + AL++ EM D K D T L+ A ++
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV 238
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL---IEAMPFEPTESIL 376
L E ++F +E+ + L + M+ + + L +A++L +E EP
Sbjct: 239 LYVE--KIFVNLER-----KNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITF 291
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYASCGQWEEANR 429
++L AC L +G R+ + V K N L + L+ ++YA CG ++A R
Sbjct: 292 ASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLI---DMYARCGCLDDAKR 344
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 125/274 (45%), Gaps = 52/274 (18%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ V D +F +L A G LS+ +G +H K C ++ ++ +L+ MY C
Sbjct: 279 MEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGC 338
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+DDA +VF++M +D+ +W S++ A+ GQ +A+ L M + SG
Sbjct: 339 LDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEM----------LNSG---- 384
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
A D +++ +++ A +++G +++ FK+M IT
Sbjct: 385 -------------QAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRIT--------P 423
Query: 181 RSQLYIEVVDL----------FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
R + Y +VDL ++ +K ++P+ ++LS+C +++ G + A
Sbjct: 424 RIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIG----ILA 479
Query: 231 TDNGLASNPHAT---TALIDMYAKCGSIEQSLEV 261
DN L P + L ++YAK G ++ E+
Sbjct: 480 ADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEI 513
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 128/332 (38%), Gaps = 73/332 (21%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV------PA 135
++ ++A+CG+ K+ D M ++V +N+MI Y + +F ++ P
Sbjct: 59 LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118
Query: 136 K------------------------DVVS---------WNSLILAYTNAGEMEKAGEMFK 162
DV+ N LI Y G + +A +F
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+M+ K+V++WN+MV GY + + + +++ EM+ KPD T+ S++ A AN S
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV 238
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
+Y + ++F + K++ WN MI
Sbjct: 239 -------------------------LYVE--------KIFVNLERKNLISWNVMIRVYMK 265
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
+ A+ L +M V+ D ITF +L AC + G + +EK + L
Sbjct: 266 NSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKK-KLCPNLL 324
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
++D+ R LD A + + M F S
Sbjct: 325 LENSLIDMYARCGCLDDAKRVFDRMKFRDVAS 356
>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 737
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 250/468 (53%), Gaps = 36/468 (7%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+HG IKT ++ L+ Y C + A K F +P K +WN+++ ++ G
Sbjct: 32 VHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGF 91
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISG------------------------------YARIG 121
D A L D MP ++V S+N +ISG Y + G
Sbjct: 92 FDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVIVGMEWNVILNNALIDAYGKCG 151
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
+ + + +F +P ++VVSW S+++AYT A +++A +FK M VKN ++W ++TG++R
Sbjct: 152 EPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVR 211
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH---VYATDNGLASN 238
+ E D+F +M V+P T SV+ ACA + G ++H + +G N
Sbjct: 212 NGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFN 271
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+ ALIDMYAKCG ++ + +F + ++DV WN +I G A +G+G +L + M +
Sbjct: 272 VYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIE 331
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ V+ + +TF+G+LS C+HAGL EG +L ME+ +GV K EHY ++DLLGR L
Sbjct: 332 AKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRNRLM 391
Query: 359 RAIELIEAMP--FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
A+ LIE +P + ++ GA+L AC +H +L++ + A+ + + G +M AN
Sbjct: 392 EAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFELEPE-NTGRYVMLAN 450
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+YA+ G+W A R RN+M + + K S IE+ + H+F+A H
Sbjct: 451 IYAASGKWGGAKRIRNVMKERCLEKEPACSRIELRNARHEFVAKDKFH 498
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 258/467 (55%), Gaps = 12/467 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ +GV +N+++P +LK + G ++HGQ ++TGF ++V+ AL+ MY
Sbjct: 123 MQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGE 182
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM-ISGYAR 119
I DA +VF++M +D++ W +M+ + + A+ L M + I IS +
Sbjct: 183 IGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASA 242
Query: 120 IGKIHSAR-------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+G++ R Y DV NS++ Y G +E+A +F +M +N I+W
Sbjct: 243 VGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISW 302
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N+M++GY ++ + + LF++M+A P+ +T ++SAC+ LGS G ++H +
Sbjct: 303 NSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVIS 362
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAAL 290
+ + + A++DMY KCG ++ ++E+F ++ +DV WN +I G +HG+G AL
Sbjct: 363 SKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEAL 422
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L M V+ +DITF +LSACSHAGL+ EG + F+ M K V +++HY CMVD+
Sbjct: 423 ELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDM 481
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L+ A LI+ +P P++ + GALL AC IH + E+G+ +A + G
Sbjct: 482 LGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGE-IAANNLFQLEPEHTGY 540
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
++ +N+YA+ +W+E R M G+ K A SVIE H F
Sbjct: 541 YVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGF 587
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 146/300 (48%), Gaps = 23/300 (7%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY--IFDKVPAKD 137
N+ML A+A+ G+ A+ L M V N Y + K+ ++ +F +V
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFT---YPFVLKVCASELGAVFGEVVHGQ 157
Query: 138 VVSWN---------SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
VV +L+ Y GE+ A E+F +ML+++V+ W M+T Y +++ ++
Sbjct: 158 VVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKA 217
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ LF +M+ D +T SV SA LG +H YA NG + +++ M
Sbjct: 218 LMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGM 277
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YAKCG++E++ VF + + ++ WN+M+ G +G AL L +M S + +T
Sbjct: 278 YAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTA 337
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE----HYGCMVDLLGRARLLDRAIELI 364
+ ++SACS+ G G +L +F ++ K++ ++D+ + LD A+E+
Sbjct: 338 LIMVSACSYLGSKHLGRKL-----HNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMF 392
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 163/481 (33%), Positives = 255/481 (53%), Gaps = 19/481 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + ++FP LK+ LS +G HGQ K G +VQT L+ MY
Sbjct: 31 MLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSL 90
Query: 61 IDDAFKVFEK--MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIM 113
+D+A KVFE+ K + +N+++ + S + A+ L M P+ VT ++
Sbjct: 91 VDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLI 150
Query: 114 ISGYARIG-----KIHSA--RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
+ + I +H + +Y FD DV N I Y G + A ++F +M V
Sbjct: 151 PACVSPINLELGSSLHCSTLKYGFDS----DVSVVNCFITMYMKCGSVNYAQKLFDEMPV 206
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
K +I+WN MV+GY ++ L V++L+ M V PD +T+ VLS+CANLG+ G +
Sbjct: 207 KGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEV 266
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+G SNP ALI+MYA+CG++ ++ VF + + W A+I G +HG+G
Sbjct: 267 EFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHG 326
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A++L EM S ++ D F+ +LSACSHAGL +G E F M++++ + EHY C
Sbjct: 327 EIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSC 386
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
MVDLLGRA L A LIE+MP +P ++ GALL AC IH+++E+ + + V +
Sbjct: 387 MVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERV-IELEPE 445
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
+ G ++ +N+Y++ + R R MM + + K G S +E+ G H F+ G HL
Sbjct: 446 NIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQ 505
Query: 467 N 467
+
Sbjct: 506 S 506
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WNT + + +++ + L+ +M +P+ T L +CA L G++ H T
Sbjct: 8 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS--QVKDVFCWNAMILGLALHGYGYAA 289
G P T LI MY K ++ + +VF ++ K C+NA++ G + A
Sbjct: 68 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+ L +MN+ V + +T +GL+ AC ++ G L K +G + C +
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK-YGFDSDVSVVNCFIT 186
Query: 350 LLGRARLLDRAIELIEAMP 368
+ + ++ A +L + MP
Sbjct: 187 MYMKCGSVNYAQKLFDEMP 205
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 155/447 (34%), Positives = 244/447 (54%), Gaps = 32/447 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G DN++FP L+K++ +S +G LH +K G V+V ++ +Y S R
Sbjct: 100 MLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRE 159
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A KVF D + L+D V S+ +I+G++
Sbjct: 160 LRSARKVF------------------------DESYSLVD------VVSWTTLITGFSNS 189
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+I AR IFD +P K+ VSWN++I Y + + +A ++F +M ++ +W+ MV+GY
Sbjct: 190 GQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYS 249
Query: 181 RSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ + E +DLF EM G+ + P+ + S +SACA L +LE G +H Y + L N
Sbjct: 250 QLGMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINV 309
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
T L+DMY KCGSI + VF ++V WN+MI GLAL+G G AL L +M
Sbjct: 310 TLGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFV 369
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ ITFI LL+ CSH+GL+ EG LFS M + +G+ +L+HYGCMVDLLGRA L+
Sbjct: 370 GPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKE 429
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A++ +E MP +P + GAL+ AC IH +E+G+ + K + + G + N++A
Sbjct: 430 ALDFVEKMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPH-HGGRYALLCNIFA 488
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSS 446
+ +W++ R++ ++K G++
Sbjct: 489 AAQRWDDVAMVRDLEKGRKVLKNPGNN 515
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 169/504 (33%), Positives = 259/504 (51%), Gaps = 41/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D+ ++ L A LSS G LH Q I+ YV +AL+++Y C
Sbjct: 281 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 340
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------------------ 102
+A VF + +++ +AW ++ F G +++L + M
Sbjct: 341 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 400
Query: 103 ---------------------PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
++ V N +IS YA+ + SA IF + KD+VSW
Sbjct: 401 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSW 460
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN-V 200
S+I AY+ G + KA E F M KNVITWN M+ Y++ + + ++ M + V
Sbjct: 461 TSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 520
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD++T ++ CA+LG+ + G +I GL + A+I MY+KCG I ++ +
Sbjct: 521 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 580
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF VKD+ WNAMI G + HG G A+++ ++ K D I+++ +LS CSH+GL
Sbjct: 581 VFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 640
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
VQEG F M++ ++ LEH+ CMVDLLGRA L A +LI+ MP +PT + GALL
Sbjct: 641 VQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALL 700
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC IH + E+ + AK V + + G M+ A +YA G+ +++ + R +M D GI
Sbjct: 701 SACKIHGNNELAELAAKHVF-ELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIK 759
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S +EV+ H F A + H
Sbjct: 760 KNPGYSWMEVDNKVHVFKADDVSH 783
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 158/360 (43%), Gaps = 43/360 (11%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
++ +K+ G L + L L K V AL+ M+ +D A ++F +
Sbjct: 159 FTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVR 218
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA---- 126
+ E + NSML + +DHA++L D MP +DV S+N+M+S ++ G++ A
Sbjct: 219 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 278
Query: 127 ----------------------------RY-------IFDKVPAKDVVSWNSLILAYTNA 151
R+ + +P D ++L+ Y +
Sbjct: 279 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS 338
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G ++A +F + +N + W +++G+L+ + E V+LF++M+A + D + +++
Sbjct: 339 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLI 398
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
S C + L G ++H +G + +LI MYAKC +++ + +F KD+
Sbjct: 399 SGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIV 458
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
W +MI + G A + M++ V IT+ +L A G ++G ++ M
Sbjct: 459 SWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVM 514
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 139/312 (44%), Gaps = 40/312 (12%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLD------------------- 84
+V +L Y L + DA ++F +MP +D+ +WN+++
Sbjct: 90 NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149
Query: 85 --------------AFASCGQMD-HAMKLIDLMPLKDVTSFN------IMISGYARIGKI 123
A SCG + H++ L L ++ S + ++ + R G +
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 209
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
A +F ++ + NS++ Y ++ A E+F M ++V++WN MV+ +S
Sbjct: 210 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 269
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E +D+ +M++ V+ D T TS L+ACA L SL G ++H N +P+ +
Sbjct: 270 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 329
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
AL+++YAK G +++ VF ++ W +I G +G +++L +M +
Sbjct: 330 ALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL 389
Query: 304 DDITFIGLLSAC 315
D L+S C
Sbjct: 390 DQFALATLISGC 401
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/438 (22%), Positives = 178/438 (40%), Gaps = 119/438 (27%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKD 137
N++L A+ SCG + A +L+ LM + +V + N+M++GYA++G++ A +F ++PA+D
Sbjct: 63 NTLLHAYLSCGALSDARRLL-LMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARD 121
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-K 196
V SW NT+++GY +S+ Y+ ++ F M +
Sbjct: 122 VASW-------------------------------NTLMSGYFQSRQYLVSLETFLSMHR 150
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS-- 254
+G+ P+ T+ + +C LG ++ + AL+DM+ +CG+
Sbjct: 151 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 210
Query: 255 -----------------------------IEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
++ +LE+F +DV WN M+ L+ G
Sbjct: 211 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 270
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY- 344
AL ++ +M V+ D T+ L+AC+ ++ G +L ++ V R L H
Sbjct: 271 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ------VIRNLPHID 324
Query: 345 ----GCMVDLLGRA-----------RLLDR--------------------AIELIEAMPF 369
+V+L ++ L DR ++EL M
Sbjct: 325 PYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRA 384
Query: 370 E---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN----LYASCG 422
E + L L+S C DL +G R +C KS + + ++ +N +YA C
Sbjct: 385 ELMTLDQFALATLISGCCSRMDLCLG-RQLHSLCLKSGQI---QAVVVSNSLISMYAKCD 440
Query: 423 QWEEANRWRNMMNDTGIV 440
+ A MN+ IV
Sbjct: 441 NLQSAEAIFRFMNEKDIV 458
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 145/363 (39%), Positives = 223/363 (61%), Gaps = 4/363 (1%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
L D+ N +I GY + A +FD+ P +DVVS+N LI + AG++ KA E+F
Sbjct: 156 LSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDL 215
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M V++ ++WNT++ G + E ++LFD M ++PD + + S LSACA LG LE G
Sbjct: 216 MPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKG 275
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+IH Y N + + +T L+D YAKCG ++ +L++F S K++F WNAM++GLA+H
Sbjct: 276 KKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMH 335
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
GYG L+ M ++ VK D I+ +G+L CSH+GLV E +LF ME +GV R+ +H
Sbjct: 336 GYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKH 395
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAK 402
YGCM DLLGRA L+ + +E+I+ MP S+ LL C IH D+EI ++ AK ++ K
Sbjct: 396 YGCMADLLGRAGLIKKVMEMIKDMPRGGDMSVWSGLLGGCRIHGDVEIAEKAAKHLMELK 455
Query: 403 SNYLSDGELMMFANLYASCGQWEEA-NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+ G + AN+YA+ +WE+ N R++ ++ + K AG S+I+++G H+F+AG
Sbjct: 456 PD--DGGVYSILANVYANAERWEDVMNIRRSLSSNRVVTKIAGFSLIQLDGVAHEFIAGD 513
Query: 462 IGH 464
H
Sbjct: 514 SLH 516
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 155/334 (46%), Gaps = 59/334 (17%)
Query: 1 MQELGVHADNYSFPLLLKA----AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYG 56
M+ L V D++SFP LKA G+ S+ C LH Q +K GF +YV +L+ Y
Sbjct: 115 MRRLSVPLDSHSFPFTLKACAQLGGVFSARC----LHCQVLKFGFLSDLYVMNSLIHGYM 170
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+DA+KVF++ P++D++++N ++D F G + A +L DLMP++D S+N +I+G
Sbjct: 171 VSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAG 230
Query: 117 YAR-----------------------------------IGKIHSARYIFDKVPAK----D 137
A+ +G++ + I D + D
Sbjct: 231 CAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVD 290
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE-VVDLFDEMK 196
L+ Y G ++ A ++F KN+ TWN M+ G L Y E +++ F M
Sbjct: 291 TFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVG-LAMHGYGELLLEYFSRMI 349
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARI-----HVYATDNGLASNPHATTALIDMYAK 251
VKPD +++ VL C++ G ++ ++ VY G+ P + D+ +
Sbjct: 350 EAGVKPDGISILGVLVGCSHSGLVDEARKLFDEMESVY----GVPREPKHYGCMADLLGR 405
Query: 252 CGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHG 284
G I++ +E+ + D+ W+ ++ G +HG
Sbjct: 406 AGLIKKVMEMIKDMPRGGDMSVWSGLLGGCRIHG 439
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 99/241 (41%), Gaps = 32/241 (13%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F + + +NT++ + I + F +M+ +V D + L ACA
Sbjct: 77 AKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQ 136
Query: 217 LGSLETGARIHVYATDNGLASNPHATTA-------------------------------L 245
LG + + +H G S+ + + L
Sbjct: 137 LGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVL 196
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
ID + K G + ++ E+F V+D WN +I G A Y A++L M D ++ D+
Sbjct: 197 IDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDN 256
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+ + LSAC+ G +++G ++ +E++ G +VD + +D A+++ +
Sbjct: 257 VALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTG-LVDFYAKCGCVDIALKIFD 315
Query: 366 A 366
+
Sbjct: 316 S 316
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 227/381 (59%), Gaps = 2/381 (0%)
Query: 85 AFASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
+ AS Q A I M + DV ++ YAR G + A ++FDK+ + +WN+
Sbjct: 22 SIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNA 81
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+I + +M+KA ++F +M ++V++W ++ GY ++ E +++F++M+ +K D
Sbjct: 82 MITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSD 141
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ SVLSACA+L +LE G + H Y +G A + +AL+DMYAK GS+E + +VF
Sbjct: 142 RFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFD 201
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
K ++ WN++I G A HG G A+ L +M + +K ++I+F+G+LSACSH GLV E
Sbjct: 202 KMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNE 261
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G F+ M +++G+ + HY CM+DLLGRA LD A I MP EP S+ GALL AC
Sbjct: 262 GRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGAC 321
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
IH + E+ R+A+ + ++ G ++ +N+YA+ GQW++A + R +M D G++K
Sbjct: 322 RIHGNTELAKRIAEHLLGMEVQIA-GIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQP 380
Query: 444 GSSVIEVNGSYHKFLAGGIGH 464
G S IEV H F+AG H
Sbjct: 381 GYSWIEVKTIMHAFVAGETSH 401
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 150/321 (46%), Gaps = 41/321 (12%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + ++ ++KA ++S G H IK GF V VQTAL+ MY ++DA
Sbjct: 5 GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG--- 121
VF+KM E+ WN+M+ A M A+KL M +DV S+ +I+GYA+ G
Sbjct: 65 GHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD 124
Query: 122 ------------KIHSARYIFDKVP------------------------AKDVVSWNSLI 145
+ S R+I V A D+V ++L+
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y +G ME A ++F KM +N ++WN+++TG + + V LF++M +KP+ +
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244
Query: 206 TVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+ VLSAC++ G + G T N G+ + T +ID+ + G ++++
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304
Query: 265 SQVK-DVFCWNAMILGLALHG 284
V+ DV W A++ +HG
Sbjct: 305 MPVEPDVSVWGALLGACRIHG 325
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 33/223 (14%)
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M VKP+ T+++V+ ACA++ SLE G + H Y G S+ TAL+ MYA+CGS
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 255 IE-------------------------------QSLEVFYKSQVKDVFCWNAMILGLALH 283
+E ++L++FY+ +DV W A+I G A +
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
GYG +L + +M + +K+D +LSAC+ ++ G + + + + G +
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQS-GFALDIVV 179
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+VD+ ++ ++ A ++ + MP + E ++++ C H
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMP-QRNEVSWNSIITGCAQH 221
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 117/252 (46%), Gaps = 17/252 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G+ +D + +L A L++ +G H +++GF + V +AL+ MY
Sbjct: 133 MRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGS 192
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
++DA +VF+KMP+++ ++WNS++ A G+ + A+ L + M + SF ++S
Sbjct: 193 MEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSA 252
Query: 117 YARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G ++ R F+ + DV + +I AG +++A M V+ +V
Sbjct: 253 CSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVS 312
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAG---NVKPDYLTVTSVLSACANLGSLETGARIH 227
W ++ G R E+ E G + Y+ ++++ +A G + A++
Sbjct: 313 VWGALL-GACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAA---GQWDDAAKVR 368
Query: 228 VYATDNGLASNP 239
D G+ P
Sbjct: 369 KLMKDRGVMKQP 380
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 155/464 (33%), Positives = 237/464 (51%), Gaps = 9/464 (1%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + +++P +L+ +G +H TIK GF +YV L+ MY +D A
Sbjct: 340 GVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKA 399
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYARI 120
++ + + EKD+++W SM+ + A++ M + NI IS A I
Sbjct: 400 QRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGI 459
Query: 121 GKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+H I +V + DV WN L+ Y G ++A F+ + K ITWN ++
Sbjct: 460 KAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLI 519
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+G+ +S LY E + +F +M K + T S +SA ANL ++ G +IH G
Sbjct: 520 SGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYT 579
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
S + ALI +Y KCGSIE + F++ ++ WN +I + HG G AL L +M
Sbjct: 580 SETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQM 639
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+K D+TF+G+L+ACSH GLV+EG F M + G+ + +HY C+VD+LGRA
Sbjct: 640 KQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQ 699
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
LDRA +E MP + LLSAC +H++LEIG+ AK + + S ++ +N
Sbjct: 700 LDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDS-ASYVLLSN 758
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
YA G+W ++ R +M D G+ K G S IEV H F G
Sbjct: 759 AYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVG 802
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 173/377 (45%), Gaps = 13/377 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV Y +L A +G ++H Q K GF +V AL+ +Y R
Sbjct: 134 MHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRS 193
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS----- 115
A +VF M D + +N+++ A CG D A+ + D M L ++ ++ I+
Sbjct: 194 FRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAA 253
Query: 116 ----GYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G R GK +HS Y+ + D + SL+ Y +G++E+A ++F NV+
Sbjct: 254 CSAVGDLRKGKQLHS--YLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVV 311
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M+ Y + + D+F M A V+P+ T +L C + G + G +IH
Sbjct: 312 LWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLT 371
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
NG S+ + + LIDMY+K G ++++ + + KDV W +MI G H + AL
Sbjct: 372 IKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEAL 431
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ EM + D+I +SAC+ V +G ++ +R+ G + + + +V L
Sbjct: 432 ETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVS-GYSADVSIWNGLVYL 490
Query: 351 LGRARLLDRAIELIEAM 367
R + A EA+
Sbjct: 491 YARCGISKEAFSSFEAI 507
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 163/342 (47%), Gaps = 9/342 (2%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H + I G G+ + L+ +Y + A +VFE++ +D ++W ++L +A G
Sbjct: 64 IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGL 123
Query: 92 MDHAMKLIDLMPLKDVTS----FNIMISGYARIGKIHSARYIFDKVPAKDVVS----WNS 143
+ A++L M V + ++S + R I +V + S N+
Sbjct: 124 GEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNA 183
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y A +F ML + +T+NT+++G+ + + +FDEM+ + PD
Sbjct: 184 LISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPD 243
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T+ S+L+AC+ +G L G ++H Y G++ + +L+D+Y K G IE++L++F
Sbjct: 244 SVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFD 303
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+V WN M++ + + M + V+ + T+ +L C+H G +
Sbjct: 304 SGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGL 363
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
G ++ S K+ G + G ++D+ + LD+A +++
Sbjct: 364 GEQIHSLTIKN-GFQSDMYVSGVLIDMYSKYGWLDKAQRILD 404
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 1/225 (0%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N LI Y G + +A +F+++ V++ ++W +++GY ++ L E V L+ EM V
Sbjct: 81 NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P ++S+LSAC + G IHV G S ALI +Y +C S + V
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F D +N +I G A G+G AL + EM S + D +T LL+ACS G +
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
++G +L S + K G++ G ++DL ++ ++ A+++ ++
Sbjct: 261 RKGKQLHSYLLKA-GMSLDYIMEGSLLDLYVKSGDIEEALQIFDS 304
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 129/320 (40%), Gaps = 52/320 (16%)
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M + ++N + G+L +++ LF A + Y+ + +V ACA +G
Sbjct: 1 MTPRGAASFNRPLAGFLAPDDPEKLLPLF----AAKCR-QYMVLGAVDFACALRACRGSG 55
Query: 224 AR------IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
R IH A GL+ LID+YAK G + ++ VF + V+D W A++
Sbjct: 56 RRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVL 115
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
G A +G G A++L EM+ S V +LSAC+ L Q G + ++ K G
Sbjct: 116 SGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQ-GF 174
Query: 338 TRKLEHYGCMVDLLGRARLL-------------------------------DRAIELIEA 366
+ ++ L R R DRA+ + +
Sbjct: 175 FSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDE 234
Query: 367 MP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS---NYLSDGELMMFANLYAS 420
M P + +LL+AC DL G ++ + +Y+ +G L+ +LY
Sbjct: 235 MQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLL---DLYVK 291
Query: 421 CGQWEEANRWRNMMNDTGIV 440
G EEA + + + T +V
Sbjct: 292 SGDIEEALQIFDSGDRTNVV 311
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 169/504 (33%), Positives = 259/504 (51%), Gaps = 41/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D+ ++ L A LSS G LH Q I+ YV +AL+++Y C
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 320
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------------------ 102
+A VF + +++ +AW ++ F G +++L + M
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 380
Query: 103 ---------------------PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
++ V N +IS YA+ + SA IF + KD+VSW
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSW 440
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN-V 200
S+I AY+ G + KA E F M KNVITWN M+ Y++ + + ++ M + V
Sbjct: 441 TSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 500
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD++T ++ CA+LG+ + G +I GL + A+I MY+KCG I ++ +
Sbjct: 501 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 560
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF VKD+ WNAMI G + HG G A+++ ++ K D I+++ +LS CSH+GL
Sbjct: 561 VFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 620
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
VQEG F M++ ++ LEH+ CMVDLLGRA L A +LI+ MP +PT + GALL
Sbjct: 621 VQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALL 680
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC IH + E+ + AK V + + G M+ A +YA G+ +++ + R +M D GI
Sbjct: 681 SACKIHGNNELAELAAKHV-FELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIK 739
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S +EV+ H F A + H
Sbjct: 740 KNPGYSWMEVDNKVHVFKADDVSH 763
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 158/360 (43%), Gaps = 43/360 (11%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
++ +K+ G L + L L K V AL+ M+ +D A ++F +
Sbjct: 139 FTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVR 198
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA---- 126
+ E + NSML + +DHA++L D MP +DV S+N+M+S ++ G++ A
Sbjct: 199 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 258
Query: 127 ----------------------------RY-------IFDKVPAKDVVSWNSLILAYTNA 151
R+ + +P D ++L+ Y +
Sbjct: 259 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS 318
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G ++A +F + +N + W +++G+L+ + E V+LF++M+A + D + +++
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLI 378
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
S C + L G ++H +G + +LI MYAKC +++ + +F KD+
Sbjct: 379 SGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIV 438
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
W +MI + G A + M++ V IT+ +L A G ++G ++ M
Sbjct: 439 SWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVM 494
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 139/312 (44%), Gaps = 40/312 (12%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLD------------------- 84
+V +L Y L + DA ++F +MP +D+ +WN+++
Sbjct: 70 NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129
Query: 85 --------------AFASCGQMD-HAMKLIDLMPLKDVTSFN------IMISGYARIGKI 123
A SCG + H++ L L ++ S + ++ + R G +
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 189
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
A +F ++ + NS++ Y ++ A E+F M ++V++WN MV+ +S
Sbjct: 190 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E +D+ +M++ V+ D T TS L+ACA L SL G ++H N +P+ +
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 309
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
AL+++YAK G +++ VF ++ W +I G +G +++L +M +
Sbjct: 310 ALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL 369
Query: 304 DDITFIGLLSAC 315
D L+S C
Sbjct: 370 DQFALATLISGC 381
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/438 (22%), Positives = 178/438 (40%), Gaps = 119/438 (27%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFNIMISGYARIGKIHSARYIFDKVPAKD 137
N++L A+ SCG + A +L+ LM + +V + N+M++GYA++G++ A +F ++PA+D
Sbjct: 43 NTLLHAYLSCGALSDARRLL-LMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARD 101
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-K 196
V SW NT+++GY +S+ Y+ ++ F M +
Sbjct: 102 VASW-------------------------------NTLMSGYFQSRQYLVSLETFLSMHR 130
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS-- 254
+G+ P+ T+ + +C LG ++ + AL+DM+ +CG+
Sbjct: 131 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 190
Query: 255 -----------------------------IEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
++ +LE+F +DV WN M+ L+ G
Sbjct: 191 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY- 344
AL ++ +M V+ D T+ L+AC+ ++ G +L ++ V R L H
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ------VIRNLPHID 304
Query: 345 ----GCMVDLLGRA-----------RLLDR--------------------AIELIEAMPF 369
+V+L ++ L DR ++EL M
Sbjct: 305 PYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRA 364
Query: 370 E---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN----LYASCG 422
E + L L+S C DL +G R +C KS + + ++ +N +YA C
Sbjct: 365 ELMTLDQFALATLISGCCSRMDLCLG-RQLHSLCLKSGQI---QAVVVSNSLISMYAKCD 420
Query: 423 QWEEANRWRNMMNDTGIV 440
+ A MN+ IV
Sbjct: 421 NLQSAEAIFRFMNEKDIV 438
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 165/472 (34%), Positives = 255/472 (54%), Gaps = 10/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE G D+ + +L A + + IG +HG ++GF V V ALL MY
Sbjct: 237 MQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGS 296
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA----MKLIDLMPLKDVTSFNIMISG 116
A VF+ M K +++WN+M+D A G+ + A +K++D + + ++
Sbjct: 297 ARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLA 356
Query: 117 YARIGKIHSARYI---FDKVPAKDVVS-WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + ++ DK+ VS NSLI Y+ ++ A +F L K +TW
Sbjct: 357 CANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNN-LEKTNVTW 415
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY ++ E ++LF M++ +K D T+ V++A A+ IH A
Sbjct: 416 NAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVR 475
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ +N +TAL+DMYAKCG+I+ + ++F Q + V WNAMI G HG G L L
Sbjct: 476 ACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDL 535
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM VK +DITF+ ++SACSH+G V+EG LF M++D+ + ++HY MVDLLG
Sbjct: 536 FNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLG 595
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LD A I+ MP +P S+LGA+L AC IH+++E+G++ A+ + K + G +
Sbjct: 596 RAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKL-FKLDPDEGGYHV 654
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YAS W++ + R M D G+ KT G S +E+ H F +G H
Sbjct: 655 LLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNH 706
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 148/296 (50%), Gaps = 13/296 (4%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +HG I GF +++V TA++ +Y R ID+A+K+FE+M KD+++W +++ +A
Sbjct: 164 GREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQ 223
Query: 89 CGQMDHAMKLIDLM----PLKDVTSFNIMISGYA-----RIGK-IHSARYIFDKVPAKDV 138
G A++L+ M D + ++ A RIG+ IH Y F V
Sbjct: 224 NGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHG--YAFRSGFESLV 281
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
N+L+ Y G A +FK M K V++WNTM+ G ++ E F +M
Sbjct: 282 NVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDE 341
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
P +T+ VL ACANLG LE G +H L SN +LI MY+KC ++ +
Sbjct: 342 GEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIA 401
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+F + +V WNAMILG A +G AL L M +K D T +G+++A
Sbjct: 402 ASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 14/299 (4%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM 96
IK GF QT ++ ++ +A +VFE + K + ++ ML +A + A+
Sbjct: 71 IKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDAL 130
Query: 97 KLIDLMPLKDVTSFNIMISGYARIGKI-------HSARYIFDKVPAK----DVVSWNSLI 145
M +V +++ YA + ++ R I + ++ +++
Sbjct: 131 CFFLRMMCDEV---RLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVM 187
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y +++ A +MF++M K++++W T+V GY ++ + L +M+ KPD +
Sbjct: 188 SLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSV 247
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T+ S+L A A++ +L G IH YA +G S + T AL+DMY KCGS + VF
Sbjct: 248 TLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGM 307
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ K V WN MI G A +G A +M D +T +G+L AC++ G ++ G
Sbjct: 308 RSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG 366
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 141/402 (35%), Positives = 230/402 (57%), Gaps = 1/402 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D+A +F++M E++++ W +M+ + ++D A KL ++MP K S+ M+ GY
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLS 247
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+I A F+ +P K V++ N++I+ + GE+ KA +F M ++ TW M+ Y
Sbjct: 248 GRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYE 307
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R +E +DLF +M+ V+P + ++ S+LS CA L SL+ G ++H + + +
Sbjct: 308 RKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVY 367
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ L+ MY KCG + ++ VF + KD+ WN++I G A HG G ALK+ EM S
Sbjct: 368 VASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSG 427
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ +T I +L+ACS+AG ++EG E+F ME F VT +EHY C VD+LGRA +D+A
Sbjct: 428 TMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKA 487
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+ELIE+M +P ++ GALL AC H L++ + AK + ++ + G ++ +++ AS
Sbjct: 488 MELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLF-ENEPDNAGTYVLLSSINAS 546
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
+W + R M + K G S IEV H F GGI
Sbjct: 547 RSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGI 588
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 14/291 (4%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V L+ Y R I +A VFE MPE+++++W +M+ + G + A L MP
Sbjct: 78 NVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP 137
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++ S+ +M G G+I AR ++D +P KDVV+ ++I G +++A +F +
Sbjct: 138 ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDE 197
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV--TSVLSACANLGSLE 221
M +NV+TW TM+TGY ++ LF+ M P+ V TS+L G +E
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVM------PEKTEVSWTSMLLGYTLSGRIE 251
Query: 222 TGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
V +A N A+I + + G I ++ VF + +D W MI
Sbjct: 252 DAEEFFEVMPMKPVIACN-----AMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAY 306
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
G+ AL L +M V+ + I +LS C+ +Q G ++ + +
Sbjct: 307 ERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 135/271 (49%), Gaps = 12/271 (4%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
+A ++F++M E+++++WN ++ + + A + +LMP ++V S+ M+ GY + G
Sbjct: 66 EARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGM 125
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ A +F ++P ++ VSW + + G ++KA +++ M VK+V+ M+ G R
Sbjct: 126 VGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCRE 185
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E +FDEM+ NV +T T++++ ++ ++ + S
Sbjct: 186 GRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVS----W 237
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
T+++ Y G IE + E F +K V NAMI+G G A ++ M D
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDR--- 294
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
D+ T+ G++ A G E +LF++M+K
Sbjct: 295 -DNATWRGMIKAYERKGFELEALDLFAQMQK 324
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 119/249 (47%), Gaps = 12/249 (4%)
Query: 83 LDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
+ + G+++ A K D + K + S+N ++SGY G AR +FD++ ++VVSWN
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
L+ Y + +A +F+ M +NV++W MV GY++ + E LF M N
Sbjct: 84 GLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERN--- 140
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
++ T + + G ++ +++ D + A+T +I + G ++++ +F
Sbjct: 141 -EVSWTVMFGGLIDDGRIDKARKLY----DMMPVKDVVASTNMIGGLCREGRVDEARLIF 195
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ + ++V W MI G + A KL M + ++++ +L + +G ++
Sbjct: 196 DEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKT----EVSWTSMLLGYTLSGRIE 251
Query: 323 EGCELFSRM 331
+ E F M
Sbjct: 252 DAEEFFEVM 260
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 17/258 (6%)
Query: 114 ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
IS +RIGKI+ AR FD + K + SWNS++ Y + G ++A ++F +M +NV++WN
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
+V+GY+++++ +E ++F+ M NV ++ T+++ G + + +
Sbjct: 84 GLVSGYIKNRMIVEARNVFELMPERNV----VSWTAMVKGYMQEGMVGEAESLFWRMPER 139
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
S LID G I+++ +++ VKDV MI GL G A +
Sbjct: 140 NEVSWTVMFGGLID----DGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIF 195
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
EM + V +T+ +++ V +LF M + V+ G L GR
Sbjct: 196 DEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLG--YTLSGR 249
Query: 354 ARLLDRAIELIEAMPFEP 371
++ A E E MP +P
Sbjct: 250 ---IEDAEEFFEVMPMKP 264
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 128/281 (45%), Gaps = 38/281 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ GV S +L L+S G +H ++ F VYV + L+ MY
Sbjct: 322 MQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGE 381
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
+ A VF++ KDII WNS++ +AS G + A+K+ MP + + + +++
Sbjct: 382 LVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTA 441
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ GK+ IF+ + +K V+ ++ + AG+++KA E+ + M +K +
Sbjct: 442 CSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDAT 501
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD----YLTVTSVLSACANLGS------- 219
W ++ G ++ +++ ++ + N +PD Y+ ++S+ ++ + G
Sbjct: 502 VWGALL-GACKTHSRLDLAEVAAKKLFEN-EPDNAGTYVLLSSINASRSKWGDVAVVRKN 559
Query: 220 --------------LETGARIHVYATDNGLASNPHATTALI 246
+E G ++H++ T G+ ++P L+
Sbjct: 560 MRTNNVSKFPGCSWIEVGKKVHMF-TRGGIKNHPEQAMILM 599
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/458 (33%), Positives = 252/458 (55%), Gaps = 11/458 (2%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L A L +G +HG +++GF V + TAL+ MY ++ A ++F+ M E++
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERN 301
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----ARIGKIHSARYIFD 131
+++WNSM+DA+ AM + M + V ++ + G A +G + R+I
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI-H 360
Query: 132 KVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
K+ ++V NSLI Y E++ A MF K+ + +++WN M+ G+ ++ I
Sbjct: 361 KLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPI 420
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
+ ++ F +M++ VKPD T SV++A A L IH + L N TTAL+
Sbjct: 421 DALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALV 480
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
DMYAKCG+I + +F + V WNAMI G HG+G AAL+L EM +K + +
Sbjct: 481 DMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGV 540
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
TF+ ++SACSH+GLV+ G + F M++++ + ++HYG MVDLLGRA L+ A + I
Sbjct: 541 TFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQ 600
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426
MP +P ++ GA+L AC IH+++ ++ A+ + + N G ++ AN+Y + WE+
Sbjct: 601 MPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLF-ELNPDDGGYHVLLANIYRAASMWEK 659
Query: 427 ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R M G+ KT G S++E+ H F +G H
Sbjct: 660 VGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAH 697
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 132/465 (28%), Positives = 221/465 (47%), Gaps = 54/465 (11%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y+F LLK G + +G +HG +K+GF ++ T L MY R +++A KVF++
Sbjct: 136 YNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDR 195
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-TSFNIMISGYARIG-------- 121
MPE+D+++WN+++ ++ G A++++ M +++ SF ++S +
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG 255
Query: 122 -KIH--SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+IH + R FD + V +L+ Y G +E A ++F ML +NV++WN+M+
Sbjct: 256 KEIHGYAMRSGFDSL----VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDA 311
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y++++ E + +F +M VKP ++V L ACA+LG LE G IH + + GL N
Sbjct: 312 YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 371
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+LI MY KC ++ + +F K Q + + WNAMILG A +G AL +M
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 431
Query: 299 SCVKADDITFIGLLSACS------HA----GLVQEGCE--------------------LF 328
VK D T++ +++A + HA G+V C +
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMI 491
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVI 385
+R+ D R + + M+D G A+EL E M +P +++SAC
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSH 551
Query: 386 HQDLEIGDRVAKMVCAKSNY---LSDGELMMFANLYASCGQWEEA 427
+E G + M+ K NY LS +L G+ EA
Sbjct: 552 SGLVEAGLKCFYMM--KENYSIELSMDHYGAMVDLLGRAGRLNEA 594
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 181/373 (48%), Gaps = 22/373 (5%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTI----KTGFCGHVYVQTALLKMYGSLRCI 61
+ A+ Y P A +L C L Q + K G + QT L+ ++ +
Sbjct: 31 IPANVYEHP-----AALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSV 85
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMI--- 114
D+A +VFE + K + +++ML FA +D A++ M DV +F ++
Sbjct: 86 DEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145
Query: 115 --SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
R+GK IH + + D+ + L Y ++ +A ++F +M +++++
Sbjct: 146 GDEAELRVGKEIHG--LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVS 203
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WNT+V GY ++ + +++ M N+KP ++T+ SVL A + L + G IH YA
Sbjct: 204 WNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAM 263
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+G S + +TAL+DMYAKCGS+E + ++F ++V WN+MI + A+
Sbjct: 264 RSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAML 323
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+ +M D VK D++ +G L AC+ G ++ G ++ + G+ R + ++ +
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMY 382
Query: 352 GRARLLDRAIELI 364
+ + +D A +
Sbjct: 383 CKCKEVDTAASMF 395
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 13/310 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + GV + S L A L G +H +++ G +V V +L+ MY +
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKE 387
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A +F K+ + +++WN+M+ FA G+ A+ M + D ++ +I+
Sbjct: 388 VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447
Query: 117 YARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + H A++I V K+V +L+ Y G + A +F M ++V TW
Sbjct: 448 IAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTW 507
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY ++LF+EM+ G +KP+ +T SV+SAC++ G +E G + +
Sbjct: 508 NAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKE 567
Query: 233 N-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILGLALH---GYGY 287
N + + A++D+ + G + ++ + + VK V + AM+ +H +
Sbjct: 568 NYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAE 627
Query: 288 AALKLLGEMN 297
A + L E+N
Sbjct: 628 KAAERLFELN 637
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 262/472 (55%), Gaps = 19/472 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D Y+ P +LK+ S +H +KT ++VQ + + +Y A
Sbjct: 179 GFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGA 238
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL---IDLMPLKDVTSFNIMISGYARIG 121
KVF+ MP +D+++W ++ + G + A+ L +D+ P + +F ++ ++G
Sbjct: 239 SKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRMDVAP--NAATFVSILGACGKLG 296
Query: 122 KIHSARYI---FDKVP-AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
++ + I K P K++V N+L+ Y + A +F ++ K++++W +M++
Sbjct: 297 CLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMIS 356
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G ++ Q E +DLF EM +PD + +TSVLSACA+LG L+ G +H Y + +
Sbjct: 357 GLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKW 416
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ H T+LIDMYAKCG IE + ++F K++ WNA I GLA++G+G ALK G +
Sbjct: 417 DVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLV 476
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARL 356
+S + ++ITF+ + SAC H+GLV EG F +M + ++ LEHYGCMVDLL RA L
Sbjct: 477 ESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAEL 536
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV----CAKSNYLSDGELM 412
++ A+ELI MP P I+GALLSA + ++E+ + K V C +S G +
Sbjct: 537 VEEAMELINKMPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNFECQES-----GVYV 591
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N YA+ +W E R +M + GI K GSS+I V+G HKF+ G H
Sbjct: 592 LLSNWYANNKKWAEVRSVRRLMKEKGISKAPGSSLIRVDGKSHKFVVGDNNH 643
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 116/301 (38%), Gaps = 38/301 (12%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N +++GY + ++ + PD TV +VL +CA + +IH A
Sbjct: 153 NLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVK 212
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L + + + +Y+ CG + +VF V+DV W +I G G A+ L
Sbjct: 213 TDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVAL 272
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEG---------------------------- 324
M+ V + TF+ +L AC G + G
Sbjct: 273 FLRMD---VAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVK 329
Query: 325 CELFSRMEKDFG--VTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGAL 379
CE + ++ F + + + M+ L + + +++L M FEP IL ++
Sbjct: 330 CESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSV 389
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDTG 438
LSAC L+ G V + + S D + ++YA CG E A + N++
Sbjct: 390 LSACASLGLLDYGRWVHEYI-DHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKN 448
Query: 439 I 439
I
Sbjct: 449 I 449
>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39952, mitochondrial; Flags: Precursor
gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 775
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 172/462 (37%), Positives = 250/462 (54%), Gaps = 22/462 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+H D L+ G + G HG I+ F V +LL MY
Sbjct: 322 MQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFEL 381
Query: 61 IDDAFKVFEKMPEK-DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ A K+F ++ E+ + AWN+ML + G+M +K I+L + + + I I +
Sbjct: 382 LSVAEKLFCRISEEGNKEAWNTMLKGY---GKMKCHVKCIEL--FRKIQNLGIEIDSASA 436
Query: 120 IGKIHSARYIFDKVPAKDVVSW-------------NSLILAYTNAGEMEKAGEMFKKMLV 166
I S +I + K + + NSLI Y G++ A MF +
Sbjct: 437 TSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADT 496
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
NVITWN M+ Y+ + + + LFD M + N KP +T+ ++L AC N GSLE G I
Sbjct: 497 -NVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMI 555
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H Y T+ N + ALIDMYAKCG +E+S E+F KD CWN MI G +HG
Sbjct: 556 HRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDV 615
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
+A+ L +M +S VK TF+ LLSAC+HAGLV++G +LF +M + + V L+HY C
Sbjct: 616 ESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQ-YDVKPNLKHYSC 674
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
+VDLL R+ L+ A + +MPF P I G LLS+C+ H + E+G R+A+ A S+
Sbjct: 675 LVDLLSRSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVA-SDPQ 733
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+DG +M AN+Y++ G+WEEA R R MM ++G+ K AG SV+
Sbjct: 734 NDGYYIMLANMYSAAGKWEEAERAREMMRESGVGKRAGHSVV 775
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 96/470 (20%), Positives = 200/470 (42%), Gaps = 45/470 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLRCIDD 63
G D+++ P+++ A L +G +HG +K G F + V + + Y + D
Sbjct: 120 GQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQD 179
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFN--IMISGY-- 117
A VF++MP++D++AW +++ G+ + + + M DV N + G+
Sbjct: 180 ACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQA 239
Query: 118 -ARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ +G + R + + S +S+ Y+ +G +A F+++ +++ +W
Sbjct: 240 CSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSW 299
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ RS E D+F EM+ + PD + ++ +++ + + G H +
Sbjct: 300 TSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIR 359
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALK 291
+ + + +L+ MY K + + ++F + S+ + WN M+ G ++
Sbjct: 360 HCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVKCIE 419
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF-----SRMEKDFGVTRKL-EHYG 345
L ++ + ++ D + ++S+CSH G V G L + ++ V L + YG
Sbjct: 420 LFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYG 479
Query: 346 CMVDLLGRARLL-----------------------DRAIELIEAM---PFEPTESILGAL 379
M DL R+ ++AI L + M F+P+ L L
Sbjct: 480 KMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTL 539
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
L ACV LE G + + + + ++ ++YA CG E++
Sbjct: 540 LMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRE 589
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 139/304 (45%), Gaps = 20/304 (6%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM 96
I G +++V + L+ Y S + + +VF + +DI WNS++ A S G ++
Sbjct: 51 ITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSL 110
Query: 97 KLIDLMPLK----DVTSFNIMISGYARIGKIHSARYI---------FDKVPAKDVVSWNS 143
M L D + +++S A + H ++ FD+ A S
Sbjct: 111 CFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGA----S 166
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV--- 200
+ Y+ G ++ A +F +M ++V+ W +++G++++ + +M +
Sbjct: 167 FVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVD 226
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KP+ T+ AC+NLG+L+ G +H +A NGLAS+ +++ Y+K G+ ++
Sbjct: 227 KPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYL 286
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F + +D+F W ++I LA G + + EM + + D + L++ L
Sbjct: 287 SFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMML 346
Query: 321 VQEG 324
V +G
Sbjct: 347 VPQG 350
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 58/155 (37%)
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
C SLE+ + + GL+ N + LI YA G S VF+ +D+F W
Sbjct: 34 CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
N++I +G +L M S D T ++SAC+ G + + K
Sbjct: 94 NSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLK 153
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G R V + L A + + MP
Sbjct: 154 HGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMP 188
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/457 (34%), Positives = 243/457 (53%), Gaps = 10/457 (2%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L+A +G +HG +K LL MY +D A VF+ M +
Sbjct: 4 ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSARYIFD 131
++ W S++ A+A G D A++L M + D+ + ++ A G + + + + +
Sbjct: 64 VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123
Query: 132 KVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+ D+ S N+L+ Y G ME A +F +M VK++I+WNTM+ GY ++ L E
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ LF +M +KPD T+ +L ACA+L SL+ G +H + NG S+ AL+D
Sbjct: 184 ALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVD 242
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY KCG + +F KD+ W MI G +HG+G A+ EM + ++ D+++
Sbjct: 243 MYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVS 302
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
FI +L ACSH+GL+ EG F+ M+ + V KLEHY C+VDLL R+ L A + I++M
Sbjct: 303 FISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSM 362
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P EP +I GALLS C IH D+++ ++VA+ V + + G ++ AN YA +WEE
Sbjct: 363 PIEPDATIWGALLSGCRIHHDVKLAEKVAEHV-FELEPENTGYYVLLANTYAEAEKWEEV 421
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R + G+ K G S IEV H FLAG H
Sbjct: 422 KKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSH 458
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 11/293 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D ++ +L A S G +H + +++V AL+ MY
Sbjct: 90 MDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGS 149
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGY 117
++DA VF +MP KDII+WN+M+ ++ + A+ L M L+ D T+ ++
Sbjct: 150 MEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLACILPAC 209
Query: 118 ARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
A + + + + + S N+L+ Y G A +F + K++ITW
Sbjct: 210 ASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWT 269
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYATD 232
M+ GY + F+EM+ ++PD ++ S+L AC++ G L+ G R +V +
Sbjct: 270 VMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDE 329
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALH 283
+ ++D+ A+ G + + + F KS D W A++ G +H
Sbjct: 330 CNVKPKLEHYACIVDLLARSGKLAMAYK-FIKSMPIEPDATIWGALLSGCRIH 381
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 34/249 (13%)
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ S+L ACAN G + G +H + L+DMYAKCG ++ ++ VF
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG-- 324
V+ V W ++I A G A++L EM+ V D T +L AC+ G ++ G
Sbjct: 61 VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120
Query: 325 ----------------CELFSRMEKDFG------------VTRKLEHYGCMVDLLGRARL 356
C M G + + + M+ + L
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180
Query: 357 LDRAIELIEAMPFE--PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-M 413
+ A+ L M E P + L +L AC L+ G V + ++ + SD ++
Sbjct: 181 PNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHI-LRNGFFSDQQVANA 239
Query: 414 FANLYASCG 422
++Y CG
Sbjct: 240 LVDMYVKCG 248
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 155/466 (33%), Positives = 262/466 (56%), Gaps = 11/466 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D + +L +L + L++H +K G G ++V AL+ +YG L + +A
Sbjct: 163 GVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEA 222
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISGYARI 120
VF M +D++ WNS++ A G++ A++L M DV + + S A+
Sbjct: 223 HWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQC 282
Query: 121 GKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
G A+ + V + D+++ N+++ Y +++ A ++F + ++V++WNT+
Sbjct: 283 GDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTL 342
Query: 176 VTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
+TGY+++ L E + ++++M +KP T SVL A + LG L+ G R+H + G
Sbjct: 343 ITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTG 402
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L + + TT LID+YAKCG + +++ +F + WNA+I GL +HG+G AL L
Sbjct: 403 LNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFS 462
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+M +K D +TF+ LL+ACSHAGLV +G F M+ +G+ +HY CMVD+LGRA
Sbjct: 463 QMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRA 522
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
LD A E I++MP +P ++ GALL AC IH ++E+G +VA + + + G ++
Sbjct: 523 GQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMG-KVASQNLFELDPENVGYYVLM 581
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+N+YA G+W+ + R+++ + KT G S +EV GS F +G
Sbjct: 582 SNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSG 627
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 12/239 (5%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
+V + SL+ AY G + +A +F +M ++V WN M++G R+ + V L M
Sbjct: 100 PNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRM 159
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
V D +T++SVL C LG +HVYA +GL+ ALID+Y K G +
Sbjct: 160 VGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGML 219
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
++ VF ++D+ WN++I G AA++L M +S V D +T + L SA
Sbjct: 220 TEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASA- 278
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYG------CMVDLLGRARLLDRAIELIEAMP 368
+ Q G EL ++ + V R+ G MVD+ + +D A ++ + +P
Sbjct: 279 ----VAQCGDELGAKSVHCY-VRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLP 332
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 138/313 (44%), Positives = 199/313 (63%), Gaps = 1/313 (0%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G+ + A +F +M ++V++WN+M+ Y + E + LFD+M+A VKP TV S+L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
SACA+LG+L+ G +H Y DN + N TAL+DMYAKCG I + +VF + KDV
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN +I G+A+HG+ A +L EM ++ V+ +DITF+ +LSACSHAG+V EG +L M
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
+G+ K+EHYGC++DLL RA LL+ A+ELI MP EP LGALL C IH + E+
Sbjct: 342 SSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFEL 401
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
G+ V K + S G ++ +N+YA+ +W++A + RN+M GI K G SVIE+
Sbjct: 402 GEMVGKRLINLQPCHS-GRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELK 460
Query: 452 GSYHKFLAGGIGH 464
G H+F+AG H
Sbjct: 461 GMVHRFVAGDWSH 473
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 15/259 (5%)
Query: 41 FCGHVYVQTALLKMY-----GSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA 95
FC V V +LK++ + DDAF +F +MP +D+++WNSML +A CG+ + A
Sbjct: 139 FCNEVGVDKGVLKVWMHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEA 198
Query: 96 MKLIDLMPLKDVTSFNI----MISGYARIGKI----HSARYIFDKVPAKDVVSWNSLILA 147
+ L D M V ++S A +G + H YI D + + +L+
Sbjct: 199 LALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 258
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G++ A ++F M K+V+ WNT++ G E LF EMK V+P+ +T
Sbjct: 259 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITF 318
Query: 208 TSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
++LSAC++ G ++ G + + ++ G+ +ID+ A+ G +E+++E+
Sbjct: 319 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMP 378
Query: 267 VKDVFC-WNAMILGLALHG 284
++ C A++ G +HG
Sbjct: 379 MEPNPCALGALLGGCRIHG 397
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 244/462 (52%), Gaps = 37/462 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + GV D ++F ++KA L +G LH +K+ F H+ Q AL+ MY
Sbjct: 32 MLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNL 91
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I DA VF +M +D+I+W S MI+G++++
Sbjct: 92 IIDALDVFSRMATRDLISWGS-------------------------------MIAGFSQL 120
Query: 121 GKIHSARYIFDKVPAK---DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMV 176
G A F ++ + D+V+WN++I + GE+ A F++M ++++WN ++
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFA-YGELRDAIFFFEEMRCNADLVSWNAIL 179
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
T +R EV L M +PDY+T+T+VL A A S+E G ++H YA GL
Sbjct: 180 TACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLN 239
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ T LID+YAKCGS++ + ++F DV W+++ILG A GYG ALKL M
Sbjct: 240 CDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTM 299
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
VK + +TF+G+L+ACSH GLV+EG +L+ MEK+FG+ EH CMVDLL RA
Sbjct: 300 RRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGC 359
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L+ A I M F+P + LL+AC H ++++G R A+ + K + + ++ N
Sbjct: 360 LNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENIL-KIDPSNSAAHVLLCN 418
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+YAS G WE+ R R++M G+ K G S IEV H F
Sbjct: 419 IYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFF 460
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 17/284 (5%)
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +NV++W +++ GY ++ ++ + +M V PD T S++ AC++LG + G
Sbjct: 1 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
++H + + ++ A ALI MY K I +L+VF + +D+ W +MI G +
Sbjct: 61 RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG-VTRKLE 342
GY AL EM + D + + +++ ++ G +++ F M + V+
Sbjct: 121 GYELEALCYFKEMLHQG-RPDLVAWNAIIAGFAY-GELRDAIFFFEEMRCNADLVSWNAI 178
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV------A 396
CM +A + R ++L+ P L +L A +EIG++V
Sbjct: 179 LTACMRH--DQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKT 236
Query: 397 KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+ C S +++G +LYA CG + A++ + M + +V
Sbjct: 237 GLNCDTS--VTNG----LIDLYAKCGSLKTAHKIFDSMINPDVV 274
>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
Length = 567
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 233/402 (57%), Gaps = 1/402 (0%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
DA ++F++MPE++++++ +M+D A G+++ A ++ D MP +++ S+ MISG G
Sbjct: 129 DAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGM 188
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
AR +F+ +P K+VV+ ++I + G+++ A +F + K+VI+WN M+ GY+ +
Sbjct: 189 FVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHN 248
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E + L M VKPD+ T+ +VL+AC+ L L G H A L S +
Sbjct: 249 GHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFS 308
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
AL+ MY+KCG++ +S VF + KD+ WN +I A HG + L EM + +
Sbjct: 309 NALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLI 368
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
DDITF+ +LSAC H G+V +LF M + ++ + EHY C+VD+L RA L++A
Sbjct: 369 PDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASS 428
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
I+ MP + +++ G+LL AC IH ++++G+ AKM+ +S+ S G ++ +N+YA+ G
Sbjct: 429 YIKHMPLKAEKNVWGSLLGACQIHGNVQLGELAAKMLV-QSDSQSSGPYVILSNIYAAAG 487
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
W + N+ R M + G+ K G S E+ H F+ G H
Sbjct: 488 MWGQVNQIRGQMKERGVKKQPGYSWTEIGNEVHMFVGGDASH 529
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 133/275 (48%), Gaps = 34/275 (12%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH--SARYIFDK-VPAK 136
N + A A G + A ++ D M +DV S+N +++ R G+ H +AR +FD+ +P++
Sbjct: 19 NQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
DVVSWNS+I G+++ A F +NV TWN M+ G +R ++ LFDEM
Sbjct: 79 DVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRLFDEMP 138
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS------------------- 237
NV ++ T+++ A G +E + D L S
Sbjct: 139 ERNV----VSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEARE 194
Query: 238 --------NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
N A TA+I + K G ++ + +F + KDV WNAMI G +G+G A
Sbjct: 195 LFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEA 254
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
++L M VK D T I +L+ACS L+++G
Sbjct: 255 MRLHALMFREGVKPDHATLIAVLTACSALALLRQG 289
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 13/174 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D+ + +L A L+ G H IK + AL+ MY + ++
Sbjct: 265 GVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGES 324
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMD------HAMKLIDLMPLKDVTSFNIMISGYA 118
VF + KDI++WN+++ A+A G+ H M++ L+P D +F ++S
Sbjct: 325 ELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIP--DDITFLSVLSACG 382
Query: 119 RIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK 167
+G + ++ +FD + +K +S + ++ + AG++EKA K M +K
Sbjct: 383 HVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLK 436
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY--IEVVDLF 192
A+ ++ N I A AG++ A +F M ++V++WN ++T R+ + LF
Sbjct: 12 ARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLF 71
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
DE D ++ S+++ C G L+ + A + +A+ A++ +
Sbjct: 72 DEAMPSR---DVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVAT----WNAMLAGLVRL 124
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G + + +F + ++V + M+ LA G A ++ M D + +++ ++
Sbjct: 125 GRVVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNL----VSWAAMI 180
Query: 313 SACSHAGLVQEGCELFSRMEK 333
S C G+ E ELF M +
Sbjct: 181 SGCVENGMFVEARELFEAMPE 201
>gi|50253500|gb|AAT71952.1| At3g21470 [Arabidopsis thaliana]
gi|53850541|gb|AAU95447.1| At3g21470 [Arabidopsis thaliana]
Length = 442
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 146/437 (33%), Positives = 241/437 (55%), Gaps = 38/437 (8%)
Query: 47 VQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG---------------- 90
V ++L+ MYG C+ A KVF++MPE+++ WN+M+ + S G
Sbjct: 2 VGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCR 61
Query: 91 ----------------QMDHAMKLIDLMP--LKDVTSFNIMISGYARIGKIHSARYIFDK 132
+++ A +L + MP LK+V ++++M+ Y K+ AR F+
Sbjct: 62 NTVTWIEMIKGYGKRIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFED 121
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P K+ W+ ++ Y G++ +A +F ++ ++++ WNT++ GY ++ + +D F
Sbjct: 122 IPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAF 181
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
M+ +PD +TV+S+LSACA G L+ G +H G+ N + ALIDMYAKC
Sbjct: 182 FNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKC 241
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G +E + VF V+ V C N+MI LA+HG G AL++ M +K D+ITFI +L
Sbjct: 242 GDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVL 301
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
+AC H G + EG ++FS M K V ++H+GC++ LLGR+ L A L++ M +P
Sbjct: 302 TACVHGGFLMEGLKIFSEM-KTQDVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPN 360
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMV---CAKSNYLSDGELMMFANLYASCGQWEEANR 429
+++LGALL AC +H D E+ ++V K++ + +N S+ L +NLYA +W+ A
Sbjct: 361 DTVLGALLGACKVHMDTEMAEQVMKIIETAGSITNSYSENHLASISNLYAHTERWQTAEA 420
Query: 430 WRNMMNDTGIVKTAGSS 446
R M G+ K+ G S
Sbjct: 421 LRVEMEKRGLEKSPGLS 437
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 16/253 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D + +L A +G +H G + +V AL+ MY
Sbjct: 184 MQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGD 243
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------IDLMPLKDVTSFNIMI 114
+++A VFE + + + NSM+ A G+ A+++ +DL P D +F ++
Sbjct: 244 LENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKP--DEITFIAVL 301
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ G + IF ++ +DV + LI +G++++A + K+M VK
Sbjct: 302 TACVHGGFLMEGLKIFSEMKTQDVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPND 361
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLT--VTSVLSACANLGSLETGARI 226
T + G + + E+ + ++ AG++ Y + S+ + A+ +T +
Sbjct: 362 TVLGALLGACKVHMDTEMAEQVMKIIETAGSITNSYSENHLASISNLYAHTERWQTAEAL 421
Query: 227 HVYATDNGLASNP 239
V GL +P
Sbjct: 422 RVEMEKRGLEKSP 434
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 235/415 (56%), Gaps = 13/415 (3%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYAR 119
A K+F +M D N+M+ +A A+ L M + V ++ +++ AR
Sbjct: 64 ARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACAR 123
Query: 120 IGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+G + R +V D+ N+LI Y N G A ++F + V++V+TWN M
Sbjct: 124 LGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIM 183
Query: 176 VTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-N 233
+ +L L + DL DEM K N++PD +T+ S++ ACA LG+LE G +H Y+ + +
Sbjct: 184 INAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELD 243
Query: 234 GLASNPHAT--TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N TAL+DMYAKCGSI+ +L+VF + +V++VF WNA+I GLA+HG+G A+
Sbjct: 244 KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAIS 303
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M + DD+TFI LL ACSHAGLV EG +F M+ F + ++EHYGC+VDLL
Sbjct: 304 LFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLL 363
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
RAR +D A+ IE MP + + LL AC ++ +++ + V + S G
Sbjct: 364 CRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRV-IELEPDSCGRY 422
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
+M +NLYA QW+ A + R M + GI KT G S IE+NG H+F+AG HL
Sbjct: 423 VMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQ 477
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 3/226 (1%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
LA +++G++ A ++F +M + NTM+ GY RSQ E V L+ M V D
Sbjct: 52 FLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDN 111
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T VL+ACA LG+++ G R H NG S+ ALI Y CGS + +VF +
Sbjct: 112 YTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDE 171
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMND-SCVKADDITFIGLLSACSHAGLVQE 323
S V+DV WN MI G A LL EM ++ D++T + L+ AC+ G ++
Sbjct: 172 STVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLER 231
Query: 324 GCEL--FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
G L +S+ F + L +VD+ + +D A+++ M
Sbjct: 232 GKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRM 277
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 149/322 (46%), Gaps = 26/322 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY---GS 57
M E GV DNY++P +L A L + +G H + +K GF ++V AL++ Y GS
Sbjct: 102 MVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGS 161
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNI 112
C D VF++ +D++ WN M++A + G + A L+D M D +
Sbjct: 162 FGCACD---VFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVS 218
Query: 113 MISGYARIGKIHSARYI------FDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKML 165
++ A++G + +++ DK D+V +L+ Y G ++ A ++F++M
Sbjct: 219 LVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMR 278
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V+NV TWN ++ G + + LFD+M+ + PD +T ++L AC++ G ++ G
Sbjct: 279 VRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLA 338
Query: 226 IHVYATDNGLASNPHATT--ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+ A N P ++D+ + ++ +L +K A +LG
Sbjct: 339 M-FQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRS 397
Query: 284 GYGYAALKLLGEM-----NDSC 300
G + + +G DSC
Sbjct: 398 GGHFDLAEKIGRRVIELEPDSC 419
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 213/355 (60%), Gaps = 1/355 (0%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
DV +I Y+ G + AR +FD V KDV WN+++ Y GE++ A ++F +M
Sbjct: 156 DVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMP 215
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+NVI+W T++ GY ++ E ++LF +M+ V+PD + + +VLSACA+LG+LE G
Sbjct: 216 QRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEW 275
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
IH Y +GL ALIDMYAK G+I ++LEVF + K V W+ +I LALHG
Sbjct: 276 IHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGL 335
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
G A+ + M + V+ +++TF+ +LSACSH G+V G F +M+ + + K+EHYG
Sbjct: 336 GGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYG 395
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
CM+DLL RA L A +L+ MPFE I G+LL+A H+D E+ K + AK
Sbjct: 396 CMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHL-AKLEP 454
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ G ++ +N YA+ G+W E+ R +M + G+ K G SVIE+N ++FLAG
Sbjct: 455 GNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFLAG 509
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 157/316 (49%), Gaps = 46/316 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+YS P +LKA LS+ +G +H QT+ + V V T+L++MY S + DA
Sbjct: 117 GLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDA 176
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
K+F+ + KD+ WN+M+ + G++ A K+ + MP ++V S+ +I+GYA+ + H
Sbjct: 177 RKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPH 236
Query: 125 SARYIFDKVPAKDVVS---------------------------------------WNSLI 145
A +F K+ ++V +N+LI
Sbjct: 237 EAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALI 296
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y +G + +A E+F+ M K+VITW+T++ L E +D+F M+ V+P+ +
Sbjct: 297 DMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEV 356
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT--ALIDMYAKCGSIEQSLEVFY 263
T ++LSAC+++G ++ G R + + P +ID+ A+ G ++++ ++ +
Sbjct: 357 TFVAILSACSHVGMVDVG-RYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLH 415
Query: 264 KSQVKDVFCWNAMILG 279
F NAMI G
Sbjct: 416 DMP----FEANAMIWG 427
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 124/271 (45%), Gaps = 32/271 (11%)
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
++ + +D + + I A T+ G A +F ++ +NT + ++ I
Sbjct: 46 FMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPIN 105
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ L+ ++ ++PD ++ SVL A L ++E G +IH + L + + T+LI
Sbjct: 106 AIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQ 165
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG----------------------- 284
MY+ CG + + ++F KDV WNAM+ G G
Sbjct: 166 MYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTL 225
Query: 285 -YGYA-------ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
GYA A++L +M V+ D+I + +LSAC+ G ++ G + + +EK G
Sbjct: 226 IAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKH-G 284
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ R + Y ++D+ ++ + RA+E+ E M
Sbjct: 285 LCRIVSLYNALIDMYAKSGNIRRALEVFENM 315
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + +L A L + +G +H K G C V + AL+ MY
Sbjct: 245 MQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGN 304
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
I A +VFE M +K +I W++++ A A G A+ + M V +F ++S
Sbjct: 305 IRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSA 364
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ +G + RY FD++ + + + +I AG +++A ++ M + N +
Sbjct: 365 CSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAM 424
Query: 171 TWNTMVTG 178
W +++
Sbjct: 425 IWGSLLAA 432
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 165/499 (33%), Positives = 265/499 (53%), Gaps = 55/499 (11%)
Query: 9 DNYSFPLLLKA--AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
+N S LLK+ + LS +G +HG ++TGF V+V+ AL+ Y +D + K
Sbjct: 123 NNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRK 182
Query: 67 VFEKMPEKDIIAWNSMLDAFA---------------------------------SCGQ-- 91
VF++M ++D+++WNSM+ ++ +CGQ
Sbjct: 183 VFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQ 242
Query: 92 -----MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
M+ ++D D++ N +I YA+ G + AR +FD++ KD V++ ++I
Sbjct: 243 DLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIIS 302
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
G ++++ E+F+ M + + TWN ++TG +++ + V+DL EM+A +P+ +T
Sbjct: 303 GLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVT 362
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
++SVLS A SL+ G IH YA G N + TA+IDMYAK G + + VF +S+
Sbjct: 363 LSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSK 422
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+ + W A+I A+HG AL L EM ++ D +TF +L+AC+H G+V + E
Sbjct: 423 DRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWE 482
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+F M K +G+ +EHY C+V LG+AR L A E + MP EP+ + GALL I
Sbjct: 483 IFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWGALLHGASIS 542
Query: 387 QDLEIGDRVAKMVCAKSNYL------SDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
D+E+G K VC +YL + G ++ ANLY+ G+W+EA+ R MN G+
Sbjct: 543 SDVELG----KSVC---DYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVGLQ 595
Query: 441 KTAGSSVIEVNGSYHKFLA 459
K GSS IE + F+A
Sbjct: 596 KIPGSSWIETSEGLRSFIA 614
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 152/307 (49%), Gaps = 24/307 (7%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH + I Y+ + L+ +Y + A VF+++P K+ ++N+ML +++ +
Sbjct: 46 LHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNR 105
Query: 92 MDHAMKLIDLMP-------------LKDVTSFNIMISGYARIGK-IHS--ARYIFDKVPA 135
A+ L + LK ++SF + ++GK +H R FD
Sbjct: 106 HGDALDLFSSLASSNLVNNISITCLLKSLSSFTL---SDVKLGKEVHGFVLRTGFDA--- 159
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
DV N+LI Y+ +++ + ++F +M ++V++WN+M++GY + LY + L+ EM
Sbjct: 160 -DVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREM 218
Query: 196 -KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
+P+ +TV SVL AC L G +H + DN + + ALI +YAKCGS
Sbjct: 219 VDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGS 278
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
++ + E+F + KD + A+I GL LHGY +L+L M + + GL+
Sbjct: 279 LDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQN 338
Query: 315 CSHAGLV 321
H G++
Sbjct: 339 NRHEGVL 345
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ LG + + +L SS G +H IK G+ ++YV TA++ MY
Sbjct: 351 MQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGY 410
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+ A +VF++ ++ ++ W +++ A+A G + A+ L M + D +F +++
Sbjct: 411 LRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAA 470
Query: 117 YARIGKIHSARYIFDKVPAKD-----VVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
A G + A IF+ + K V + ++ A A + +A E KM ++ +
Sbjct: 471 CAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAK 530
Query: 171 TWNTMVTG 178
W ++ G
Sbjct: 531 VWGALLHG 538
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 168/542 (30%), Positives = 266/542 (49%), Gaps = 83/542 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + +S ++ A L S G ++HG IK G+ + AL+ MY + + DA
Sbjct: 253 GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADA 312
Query: 65 FKVFEKMPEKDIIAWNS------------------------------------------- 81
VFEK+ + DI++WN+
Sbjct: 313 ISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVG 372
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----- 136
++D ++ C ++ A +L+P KD+ ++N +ISGY++ + A +F ++ +
Sbjct: 373 LVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFN 432
Query: 137 ----------------------------------DVVSWNSLILAYTNAGEMEKAGEMFK 162
D+ NSLI +Y +E A +F+
Sbjct: 433 QTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFE 492
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
+ + +++++ +M+T Y + E + LF EM+ +KPD +S+L+ACANL + E
Sbjct: 493 ECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQ 552
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G ++HV+ G + A +L++MYAKCGSI+ + F + + + W+AMI GLA
Sbjct: 553 GKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQ 612
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
HG+G AL+L +M V + IT + +L AC+HAGLV E F ME+ FG E
Sbjct: 613 HGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQE 672
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK 402
HY CM+DLLGRA ++ A+EL+ MPFE S+ GALL A IH+D+E+G R A+M+
Sbjct: 673 HYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFIL 732
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
S G ++ AN+YAS G+WE R +M D+ + K G S IEV + FL G
Sbjct: 733 EPEKS-GTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDR 791
Query: 463 GH 464
H
Sbjct: 792 SH 793
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/440 (23%), Positives = 193/440 (43%), Gaps = 92/440 (20%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LGV + ++F +LKA I+ IG +HG + +GF G V+V L+ MY
Sbjct: 148 MHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDE 207
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFAS---CGQ---MDHAMKLIDLMP----------- 103
D+ ++F+++PE+++++WN++ + CG+ + + M L + P
Sbjct: 208 FLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNA 267
Query: 104 ---LKDVT-------------------SFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
L+D + S N ++ YA++G + A +F+K+ D+VSW
Sbjct: 268 CTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSW 327
Query: 142 NSLILA-------------------------------------------YTNAGEMEKAG 158
N++I Y+ +E A
Sbjct: 328 NAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDAR 387
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
F + K++I WN +++GY + +E + LF EM + + T++++L + A L
Sbjct: 388 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQ 447
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+ ++H + +G S+ + +LID Y KC +E + +F + + D+ + +MI
Sbjct: 448 VVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMIT 507
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
A +G G ALKL EM D +K D LL+AC++ ++G +L + K
Sbjct: 508 AYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK----- 562
Query: 339 RKLEHYGCMVDLLGRARLLD 358
YG ++D+ L++
Sbjct: 563 -----YGFVLDIFAGNSLVN 577
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 163/345 (47%), Gaps = 23/345 (6%)
Query: 14 PLLLKAAGILSSSCI------GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
P + + +LS C GL +H K+G ++ L+ +Y R A K+
Sbjct: 54 PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARIGKI 123
++ E D+++W++++ +A G A+ M L V +F+ ++ + + +
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173
Query: 124 HSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ + V DV N+L++ Y E + +F ++ +NV++WN + + Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E V LF EM +KP+ +++S+++AC L G IH Y G +P
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ AL+DMYAK G + ++ VF K + D+ WNA+I G LH + AL+LLG+M
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ 353
Query: 300 C--------VKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDF 335
+++D +GL+ S L+++ F+ + EKD
Sbjct: 354 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 398
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 148/298 (49%), Gaps = 20/298 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ + + +LK+ L + +HG ++K+GF +YV +L+ YG
Sbjct: 424 MHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH 483
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------IDLMPLKDVTS----- 109
++DA ++FE+ D++++ SM+ A+A GQ + A+KL ++L P + V S
Sbjct: 484 VEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNA 543
Query: 110 -FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
N+ + +H +Y F D+ + NSL+ Y G ++ AG F ++ +
Sbjct: 544 CANLSAFEQGKQLHVHILKYGF----VLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG 599
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+++W+ M+ G + + + LF++M V P+++T+ SVL AC + G L T A+++
Sbjct: 600 IVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAG-LVTEAKLYF 658
Query: 229 YATDNGLASNP--HATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
+ + P +ID+ + G I +++E+ K + + W A++ +H
Sbjct: 659 ESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIH 716
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+++L D+ GN P ++ + +LS C SL G +IH + T +GL+ +P LI+
Sbjct: 43 ILNLIDK---GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLIN 99
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
+Y+KC + ++ +S D+ W+A+I G A +G G AL EM+ VK ++ T
Sbjct: 100 LYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFT 159
Query: 308 FIGLLSACS-----HAGLVQEGCELFSRMEKDFGVTRKL-EHYGCMVDLLGRARLLDRAI 361
F +L ACS G G + S E D V L Y + L RL D
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP 219
Query: 362 E 362
E
Sbjct: 220 E 220
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 250/479 (52%), Gaps = 23/479 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + DN +F +L + +G +HG+ ++G V + AL+ MY +RC
Sbjct: 523 MQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMY--IRC 580
Query: 61 --IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
+ DA VF + +D+++W +M+ C MK I+L F + S ++
Sbjct: 581 GSLQDARNVFHSLQHRDVMSWTAMI---GGCADQGEDMKAIELFWQMQNEGFRPVKSTFS 637
Query: 119 RIGKIHSARYIFDKVPAKDVVSW-------------NSLILAYTNAGEMEKAGEMFKKML 165
I K+ ++ D+ K V+++ N+LI AY+ +G M A E+F KM
Sbjct: 638 SILKVCTSSACLDE--GKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMP 695
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+++++WN ++ GY ++ L V+ +M+ +V P+ + S+L+AC++ +LE G R
Sbjct: 696 SRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKR 755
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H L + ALI MYAKCGS ++ EVF K+V WNAMI A HG
Sbjct: 756 VHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGL 815
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
AL M +K D TF +LSAC+HAGLV EG ++FS ME ++GV +EHYG
Sbjct: 816 ASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYG 875
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
C+V LLGRAR A LI MPF P ++ LL AC IH ++ + + A K N
Sbjct: 876 CLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNAL-KLNA 934
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ ++ +N+YA+ G+W++ + R +M GI K G S IEV+ H+F+A H
Sbjct: 935 RNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSH 993
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/343 (32%), Positives = 178/343 (51%), Gaps = 16/343 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ D ++ LL A S G +H T++ G + V TAL+ M +RC
Sbjct: 220 MSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTM--CVRC 277
Query: 61 --IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIM 113
+D A + F+ ++D++ +N+++ A A G A + D + L T +I+
Sbjct: 278 GDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSIL 337
Query: 114 ----ISGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S GK IHS +I + + DV N+LI Y G++ KA E+F M ++
Sbjct: 338 NACSTSKALEAGKLIHS--HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+I+WN ++ GY R + E + L+ +M++ VKP +T +LSACAN + G IH
Sbjct: 396 LISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHE 455
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+G+ SN H AL++MY +CGS+ ++ VF +Q +DV WN+MI G A HG
Sbjct: 456 DILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYET 515
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
A KL EM + ++ D+ITF +LS C + ++ G ++ R+
Sbjct: 516 AYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI 558
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/472 (27%), Positives = 214/472 (45%), Gaps = 47/472 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV + ++ +L A + G ++H + G V + AL+ MY
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD 380
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
+ A ++F MP++D+I+WN+++ +A AM+L M + V +F ++S
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + I + + + S N+L+ Y G + +A +F+ ++VI+W
Sbjct: 441 CANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISW 500
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N+M+ G+ + Y LF EM+ ++PD +T SVLS C N +LE G +IH T+
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+GL + + ALI+MY +CGS++ + VF+ Q +DV W AMI G A G A++L
Sbjct: 561 SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIEL 620
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE-----LFSRMEKDFGVTRKL----EH 343
+M + + TF +L C+ + + EG + L S E D GV L
Sbjct: 621 FWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSK 680
Query: 344 YGCMVD-------------------LLGRAR--LLDRAIELIEAMPFE---PTESILGAL 379
G M D + G A+ L A+E M + P + +L
Sbjct: 681 SGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSL 740
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA---NLYASCGQWEEAN 428
L+AC LE G RV + + G++ + A ++YA CG EA
Sbjct: 741 LNACSSFSALEEGKRVHAEIVKRK---LQGDVRVGAALISMYAKCGSQGEAQ 789
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 176/348 (50%), Gaps = 15/348 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H Q ++ +++ L+ MY R + DA +VF++MP +D+I+WNS++ +A G
Sbjct: 49 IHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGF 108
Query: 92 MDHAMKLIDLM------PLKDVTSFNIMISGYARI-----GKIHSARYIFDKVPAKDVVS 140
A +L + M P K +T +I+ + Y+ KIHS I +D
Sbjct: 109 KKKAFQLFEEMQNAGFIPNK-ITYISILTACYSPAELENGKKIHSQ--IIKAGYQRDPRV 165
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
NSL+ Y G++ +A ++F + ++V+++NTM+ Y + E + LF +M + +
Sbjct: 166 QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGI 225
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD +T ++L A L+ G RIH + GL S+ TAL+ M +CG ++ + +
Sbjct: 226 SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQ 285
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F + +DV +NA+I LA HG+ A + M V + T++ +L+ACS +
Sbjct: 286 AFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKA 345
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++ G + S + +D G + ++ ++ + R L +A EL MP
Sbjct: 346 LEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKARELFYTMP 392
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 203/474 (42%), Gaps = 53/474 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G + ++ +L A + G +H Q IK G+ VQ +LL MYG
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PLKDVTSFNI-- 112
+ A +VF + +D++++N+ML +A + + L M P K VT N+
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDK-VTYINLLD 237
Query: 113 ------MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
M+ RI K+ ++ D+ +L+ G+++ A + FK
Sbjct: 238 AFTTPSMLDEGKRIHKL-----TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTAD 292
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
++V+ +N ++ + +E + + M++ V + T S+L+AC+ +LE G I
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H + +++G +S+ ALI MYA+CG + ++ E+FY +D+ WNA+I G A
Sbjct: 353 HSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDR 412
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG---------------------- 324
A++L +M VK +TF+ LLSAC+++ +G
Sbjct: 413 GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANAL 472
Query: 325 ------CELFSRMEKDFGVT--RKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTE 373
C + F T R + + M+ + + A +L + M EP
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
++LS C + LE+G ++ + L N+Y CG ++A
Sbjct: 533 ITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDA 586
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 1/175 (0%)
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
D+ + + + + T ++L C L RIH + + + + LI+MY
Sbjct: 13 DVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMY 72
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
KC S+ + +VF + +DV WN++I A G+ A +L EM ++ + IT+I
Sbjct: 73 VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYI 132
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+L+AC ++ G ++ S++ K G R ++ + G+ L RA ++
Sbjct: 133 SILTACYSPAELENGKKIHSQIIKA-GYQRDPRVQNSLLSMYGKCGDLPRARQVF 186
>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
Length = 504
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 236/422 (55%), Gaps = 15/422 (3%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMP------------EKDIIAWNSMLDAFASCGQM 92
V+ LL YG +D A ++F+++P E+++++WNSM+ + +
Sbjct: 84 VHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDI 143
Query: 93 DHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152
A L D M +D S+N MISGY R+ + A +F ++P D ++WNS+I + G
Sbjct: 144 FSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKG 203
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+E A +F + KN+++WN+M+ GY + Y +L+ +M KPD T++SVLS
Sbjct: 204 NLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLS 263
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVF 271
C+ +L G +IH T + P +LI MY++CG+I ++ +F + ++ K+V
Sbjct: 264 VCSGFAALHLGMQIHQQITKTVIPDIP-INNSLITMYSRCGAIVEARTIFDEVKLQKEVI 322
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WNAMI G A HG+ AL+L M V+ ITFI +L+AC+HAG V+EG F M
Sbjct: 323 SWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSM 382
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
+FG+ ++EH+ +VD++GR L+ A++LI +MPFEP +++ GALL AC +H ++E+
Sbjct: 383 ACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVEL 442
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
RVA K S ++ N+YA GQW+ A R MM I K G S ++ +
Sbjct: 443 A-RVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVDSS 501
Query: 452 GS 453
S
Sbjct: 502 HS 503
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 141/322 (43%), Gaps = 88/322 (27%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD-------------- 106
+D+A ++F+ M E+++++WN+M+ F G ++ A++ MP +D
Sbjct: 1 MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQN 60
Query: 107 -----------------------VTSFNIMISGYARIGKIHSARYIFDKVP--------- 134
V ++NI+++GY + G++ AR +FD++P
Sbjct: 61 GELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDG 120
Query: 135 ---AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
++VVSWNS+I+ Y A ++ A +F +M ++ I+WNTM++GY+R E L
Sbjct: 121 GRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWML 180
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
F EM PD LT S++S +A+
Sbjct: 181 FQEMP----NPDTLTWNSMISG-----------------------------------FAQ 201
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
G++E + +F K++ WN+MI G +G A +L +M K D T +
Sbjct: 202 KGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSV 261
Query: 312 LSACSHAGLVQEGCELFSRMEK 333
LS CS + G ++ ++ K
Sbjct: 262 LSVCSGFAALHLGMQIHQQITK 283
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 166/470 (35%), Positives = 257/470 (54%), Gaps = 13/470 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + ++ ++LKA LS+ G +H G V V TALL+MYG I++A
Sbjct: 124 GVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEA 183
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARI 120
++F+ + DII+W M+ A+A G A +L+ M + + ++ +++ A
Sbjct: 184 RRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASE 243
Query: 121 G------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
G ++H R+ D DV +L+ Y +G ++ A +F +M V++V++WN
Sbjct: 244 GALKWVKRVH--RHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNV 301
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ + E DLF +M+ KPD + S+L+ACA+ G+LE +IH +A D+G
Sbjct: 302 MIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSG 361
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L + TAL+ MY+K GSI+ + VF + +V++V WNAMI GLA HG G AL++
Sbjct: 362 LEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFR 421
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
M VK D +TF+ +LSACSHAGLV EG + M + +G+ + H CMVDLLGRA
Sbjct: 422 RMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRA 481
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
L A I+ M +P E+ GALL +C + ++E+G+ VAK K + + ++
Sbjct: 482 GRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERL-KLDPKNAATYVLL 540
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G+W+ + R MM + GI K G S IEV+ H FL H
Sbjct: 541 SNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSH 590
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 97/181 (53%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+L+ Y G +++A +F ++ K+ +WN M+ GY+ + + + LF EM V+
Sbjct: 67 NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQ 126
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ T +L ACA+L +L+ G +H GL S+ TAL+ MY KCGSI ++ +
Sbjct: 127 PNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRI 186
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F D+ W MI A G G A +L+ +M K + IT++ +L+AC+ G +
Sbjct: 187 FDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGAL 246
Query: 322 Q 322
+
Sbjct: 247 K 247
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 132/322 (40%), Gaps = 83/322 (25%)
Query: 84 DAFASCGQMDHAMKLIDLMPLKDVTS-------------FNIMISGYARIGKIHSARYIF 130
D+F + +K DLM K V N ++ Y G++ AR +F
Sbjct: 27 DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86
Query: 131 DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV-------------------IT 171
D + K SWN++I Y E A +F++M + V +
Sbjct: 87 DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146
Query: 172 WNTMV-----TGYLRSQLYI---------------EVVDLFDEM---------------- 195
W V G L S + + E +FD +
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206
Query: 196 KAGNVKPDY---------------LTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++GN K Y +T S+L+ACA+ G+L+ R+H +A D GL +
Sbjct: 207 QSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVR 266
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TAL+ MYAK GSI+ + VF + +V+DV WN MI A HG G+ A L +M
Sbjct: 267 VGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEG 326
Query: 301 VKADDITFIGLLSACSHAGLVQ 322
K D I F+ +L+AC+ AG ++
Sbjct: 327 CKPDAIMFLSILNACASAGALE 348
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+V L + ++ G + ++ V VL C L ++H + + N H L+
Sbjct: 13 IVVLMNRLQRGLITDSFMYV-EVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLH 71
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
+Y +CG ++++ VF K WNAMI G H + A++L EM V+ + T
Sbjct: 72 VYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGT 131
Query: 308 FIGLLSACSHAGLVQEGCELFS 329
++ +L AC+ ++ G E+ +
Sbjct: 132 YMIILKACASLSALKWGKEVHA 153
>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial [Vitis vinifera]
Length = 681
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 236/422 (55%), Gaps = 15/422 (3%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMP------------EKDIIAWNSMLDAFASCGQM 92
V+ LL YG +D A ++F+++P E+++++WNSM+ + +
Sbjct: 261 VHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDI 320
Query: 93 DHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152
A L D M +D S+N MISGY R+ + A +F ++P D ++WNS+I + G
Sbjct: 321 FSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKG 380
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+E A +F + KN+++WN+M+ GY + Y +L+ +M KPD T++SVLS
Sbjct: 381 NLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLS 440
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVF 271
C+ +L G +IH T + P +LI MY++CG+I ++ +F + ++ K+V
Sbjct: 441 VCSGFAALHLGMQIHQQITKTVIPDIP-INNSLITMYSRCGAIVEARTIFDEVKLQKEVI 499
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WNAMI G A HG+ AL+L M V+ ITFI +L+AC+HAG V+EG F M
Sbjct: 500 SWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSM 559
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
+FG+ ++EH+ +VD++GR L+ A++LI +MPFEP +++ GALL AC +H ++E+
Sbjct: 560 ACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVEL 619
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
RVA K S ++ N+YA GQW+ A R MM I K G S ++ +
Sbjct: 620 A-RVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVDSS 678
Query: 452 GS 453
S
Sbjct: 679 HS 680
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 105/439 (23%), Positives = 195/439 (44%), Gaps = 37/439 (8%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG--QMDHAMKLIDL 101
++ +++ Y R + A K+F++MP++D+++WN M+ + SC ++ L D
Sbjct: 97 NIVTWNSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDE 156
Query: 102 MPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
MP +D S+N MISGY R G++ A +FD + ++VVSWN+++ + G++E+A E F
Sbjct: 157 MPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFF 216
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVD-LFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
+M ++ + + +V G +++ E L + + K D + ++L A
Sbjct: 217 MRMPERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGR 276
Query: 221 ETGAR-----IHVY---ATDNG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
AR I Y D G N + ++I Y K I + +F + + +D
Sbjct: 277 VDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTI 336
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN MI G A L EM + D +T+ ++S + G ++ LF+ +
Sbjct: 337 SWNTMISGYVRMSDMEEAWMLFQEMPN----PDTLTWNSMISGFAQKGNLELARALFATI 392
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSAC----V 384
+ + L + M+ A EL M + P L ++LS C
Sbjct: 393 PQ-----KNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAA 447
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
+H ++I ++ K V + + L+ +Y+ CG EA R + ++ + K
Sbjct: 448 LHLGMQIHQQITKTVIP--DIPINNSLI---TMYSRCGAIVEA---RTIFDEVKLQKEVI 499
Query: 445 SSVIEVNG-SYHKFLAGGI 462
S + G ++H F A +
Sbjct: 500 SWNAMIGGYAFHGFAADAL 518
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 138/300 (46%), Gaps = 47/300 (15%)
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP 134
D+ N + G+++ A L D MP +++ ++N MI+GY R ++ AR +FD++P
Sbjct: 66 DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125
Query: 135 AKDVVSWNSLILAYTN--AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+DVVSWN +I Y + +E+ +F +M ++ ++WNTM++GY RS E + LF
Sbjct: 126 DRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLF 185
Query: 193 DEMKAGNV---------------------------KPDYLTVTSVLSACANLGSLETGAR 225
D M+ NV + D +++++++ G L+ R
Sbjct: 186 DSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKR 245
Query: 226 IHVYA--TDNGLASNPHATTALIDMYAKCGSIEQSLEV-----FYKSQVKD-------VF 271
I + + D+ HA L+ Y + G ++++ ++ FY KD V
Sbjct: 246 ILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVV 305
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN+MI+ ++A L +M + D I++ ++S ++E LF M
Sbjct: 306 SWNSMIMCYVKARDIFSARVLFDQMKER----DTISWNTMISGYVRMSDMEEAWMLFQEM 361
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 123/270 (45%), Gaps = 52/270 (19%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D+ + N IS R G+I+ AR +FD +P +++V+WNS+I Y EM KA ++F +M
Sbjct: 66 DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125
Query: 166 VKNVITWNTMVTGYLRSQ--LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
++V++WN M++GY+ Q E LFDEM + C + ++ +G
Sbjct: 126 DRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERD--------------CVSWNTMISG 171
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
Y + G ++++L++F Q ++V WNAM+ G +
Sbjct: 172 -------------------------YTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQN 206
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF---SRMEKDFGVTRK 340
G A++ M + D + L++ G + E + R + D G
Sbjct: 207 GDVERAIEFFMRMPER----DSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKG---D 259
Query: 341 LEH-YGCMVDLLGRARLLDRAIELIEAMPF 369
L H Y ++ G+ +D+A +L + +PF
Sbjct: 260 LVHAYNILLAGYGQNGRVDKARQLFDQIPF 289
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 152/443 (34%), Positives = 239/443 (53%), Gaps = 40/443 (9%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID------LMPLKDVTSF---- 110
I A+K+F +P + WN+++ F + A+ L +P SF
Sbjct: 60 ISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRA 119
Query: 111 ---------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
N +I YA + +AR +FD +DV++W +
Sbjct: 120 CTDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTA 179
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y +G +E A E+F +M +N ++W+ M+TGY+ ++ E ++LF++++ ++P+
Sbjct: 180 LINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPN 239
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ + L+AC+ LGSL+ G IH Y NG + TAL+DMYAKCG IE + VF
Sbjct: 240 HAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFE 299
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
K KD F + ++I GLA HG A++L G M V +++TFI +LSACS GLV E
Sbjct: 300 KMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDE 359
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G +F+ M +G+ ++HYGCMVDLLGRA LL+ A L+ MP EP +LGALL++C
Sbjct: 360 GLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSC 419
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
+H D+E+G + + + L G + ++ +N+YAS QW+ + R M + K
Sbjct: 420 RVHGDVELGKETVESLVERG--LDHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKKV 477
Query: 443 AGSSVIEVNGSYHKFLAGGIGHL 465
G S IE++GS +F+AG + +L
Sbjct: 478 PGCSSIEIDGSVSEFIAGDMSYL 500
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 148/325 (45%), Gaps = 43/325 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G +NY+F +L+A +S +GL H Q IK G+ + +V L+ +Y +
Sbjct: 101 MLQTGFLPNNYTFSFVLRAC--TDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSS 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A K+F+ +D+I W ++++ + G ++ A +L D MP ++ S++ MI+GY +
Sbjct: 159 VEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHM 218
Query: 121 GKIHSARYIFDKVPAK---------------------------------------DVVSW 141
G A +F+ + D V
Sbjct: 219 GMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLG 278
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+L+ Y G +E A +F+KM K+ + ++++G + + LF M++ V
Sbjct: 279 TALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVI 338
Query: 202 PDYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T VLSAC+ +G ++ G RI + + G+ ++D+ + G +E++
Sbjct: 339 PNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKR 398
Query: 261 VFYKSQVK-DVFCWNAMILGLALHG 284
+ + ++ D + A++ +HG
Sbjct: 399 LVREMPMEPDSYVLGALLNSCRVHG 423
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 98/219 (44%), Gaps = 14/219 (6%)
Query: 118 ARIGKIHSARYI----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
++I ++HS + D A ++S + A ++ ++ A ++F + + WN
Sbjct: 24 SQIKQMHSHLIVSASRLDPFAAGKIIS----LFAVSSNADISHAYKLFLSLPHRTTFIWN 79
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
T++ ++ + L+ M P+ T + VL AC + + G H
Sbjct: 80 TIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTD--NSPVGLASHAQVIKL 137
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
G S LI +YA S+E + ++F S +DV W A+I G G+ A +L
Sbjct: 138 GWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELF 197
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
+M + +++++ +++ H G+ +E ELF+ ++
Sbjct: 198 DQMPER----NEVSWSAMITGYVHMGMFREALELFNDLQ 232
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 161/470 (34%), Positives = 262/470 (55%), Gaps = 17/470 (3%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E+ V D Y+ P LL AA + + H K G H + +L+ MY C+D
Sbjct: 110 EVRVRPDAYTLPFLLLAAARCPAPALARSAHALLEKIGLGDHDHTVHSLITMYS---CLD 166
Query: 63 D---AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN-----IMI 114
D A +VF+ + +D+++WNSM+ A+ G + ++ M + + N +++
Sbjct: 167 DHLAARRVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAVAPNGVTLAVVL 226
Query: 115 SGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ G + R++ + V + D + ++L+ Y GEM +A +F + K+V+
Sbjct: 227 TACRDAGNLVLGRWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVV 286
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M+TGY ++ + E + LF M+ + PD +T+ VLS+CA +G+L+ G + YA
Sbjct: 287 AWNAMITGYAQNGMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYA 346
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
GL +N + TAL+DMYAKCG +E++ VF K K+ WNA+I GLA +G GY A+
Sbjct: 347 MRRGLYNNVYVGTALVDMYAKCGDLEKATHVFGKMPFKNEASWNALICGLAFNGRGYDAI 406
Query: 291 KLLGEMNDS-CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+ M D ++ DDITFIG+LSAC HAGL++ G +LF+ + F + ++EHY C+VD
Sbjct: 407 QQFELMRDEKGLQPDDITFIGVLSACVHAGLLEYGRQLFNSLTPVFKIIPRIEHYSCIVD 466
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LL RA L+ A + IE MP + +LGALL+AC ++ E+G+RV + K +
Sbjct: 467 LLARAGHLEEAWDFIEEMPGKVDAVMLGALLAACRKCKNTEVGERVINRI-MKLEPSNSW 525
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
++ + +YA+ + +E+ R +M + G+ KT G S +EVNG +F A
Sbjct: 526 NYVVSSKIYATSDKMDESARMIGLMRERGVNKTPGCSWVEVNGKVLEFYA 575
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 34/231 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G+ D + +L + + + +G+ L ++ G +VYV TAL+ MY
Sbjct: 311 MREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYVGTALVDMYAKCGD 370
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A VF KMP K+ +WN+++ A G+ A++ +LM +D
Sbjct: 371 LEKATHVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELM--RD-------------- 414
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
+K D +++ ++ A +AG +E ++F + ++ + ++ +
Sbjct: 415 ----------EKGLQPDDITFIGVLSACVHAGLLEYGRQLFNSLTPVFKIIPRIEHYSCI 464
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
V R+ E D +EM K D + + ++L+AC + E G R+
Sbjct: 465 VDLLARAGHLEEAWDFIEEMPG---KVDAVMLGALLAACRKCKNTEVGERV 512
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 160/482 (33%), Positives = 251/482 (52%), Gaps = 48/482 (9%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
+G +H + G V + ++ Y S ID + VF + E + +NSM+ A+A
Sbjct: 88 LGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYA 147
Query: 88 SCGQMDHAM----------------------------------KLIDLMPLKDVTSFNIM 113
G + + K + + L+ F++
Sbjct: 148 RYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLY 207
Query: 114 ISG-----YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
++ Y + G+I+ A +FD + +DV SWN+L+ YT +G ++ A +F++M +N
Sbjct: 208 VATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRN 267
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLTVTSVLSACANLGSLETGARI 226
+++W TM++GY +S L + + LFDEM + V+P+++T+ SVL ACA L +LE G +I
Sbjct: 268 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 327
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK--SQVKDVFCWNAMILGLALHG 284
H A GL SN AL MYAKCGS+ + F K K++ WN MI A +G
Sbjct: 328 HELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG 387
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
+G A+ EM + ++ DDITF GLLS CSH+GLV G + F+ M + + ++EHY
Sbjct: 388 HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHY 447
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK--MVCAK 402
C+ DLLGRA L A +L+ MP SI G+LL+AC H++LE+ + A+ V
Sbjct: 448 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEP 507
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
N G ++ +N+YA G+W+E ++ R ++ G K+ G S IE+NG H FL G
Sbjct: 508 EN---TGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDT 564
Query: 463 GH 464
H
Sbjct: 565 SH 566
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 128/268 (47%), Gaps = 43/268 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G D ++FP +LK++ L S +G +HG ++ G +YV T+L+ +YG
Sbjct: 162 MHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGE 221
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+DA KVF+ M +D+ +WN++L + G +D A+ + + MP +++ S+ MISGY++
Sbjct: 222 INDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQS 281
Query: 121 GKIHSARYIFDKVPAKDV---VSW-------------------------------NS--- 143
G A +FD++ +D +W NS
Sbjct: 282 GLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNAS 341
Query: 144 ----LILAYTNAGEMEKAGEMFKKMLV--KNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
L Y G + A F K+ KN+I WNTM+T Y ++ V F EM
Sbjct: 342 VLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQ 401
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGAR 225
++PD +T T +LS C++ G ++ G +
Sbjct: 402 AGIQPDDITFTGLLSGCSHSGLVDVGLK 429
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 58/320 (18%), Positives = 108/320 (33%), Gaps = 66/320 (20%)
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P L+ V L L+ G ++H + GL + ++ YA G I+ S+
Sbjct: 67 PPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVS 126
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF-------IGLLS 313
VF +N+MI A +G+ + M+ D TF + LLS
Sbjct: 127 VFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLS 186
Query: 314 A----CSHAGLVQEGCE-----------LFSRMEK--------DFGVTRKLEHYGCMVDL 350
C H +++ G + L+ + + D R + + ++
Sbjct: 187 VWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAG 246
Query: 351 LGRARLLDRAIELIEAMPF------------------------------------EPTES 374
++ +D A+ + E MP+ P
Sbjct: 247 YTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWV 306
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
+ ++L AC LE G ++ ++ C + L+ +YA CG +A + +
Sbjct: 307 TIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKL 366
Query: 435 NDTGIVKTAGSSVIEVNGSY 454
N A +++I SY
Sbjct: 367 NRNEKNLIAWNTMITAYASY 386
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 167/496 (33%), Positives = 251/496 (50%), Gaps = 57/496 (11%)
Query: 26 SCIGLM----LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNS 81
SC+ +H Q + +GF Y+ LL +Y S + A KVFE + WN
Sbjct: 36 SCVSFRNLAKIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQ 95
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVT------SF-------------------NIMISG 116
++ +++L M L V SF ++++G
Sbjct: 96 IIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNG 155
Query: 117 Y-----ARIGKIH--------------SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
Y R I+ ARY+FD++P +VV WNSL+ Y G+ + A
Sbjct: 156 YWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGA 215
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
++F +M +NV TW MV G+ ++ + LFD+M+ V+ D + + + LSACA L
Sbjct: 216 RKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAEL 275
Query: 218 GSLETGARIHVYATDNGLASNPHA----TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
G L G IH Y + + ALI MYA CG ++ + +VF + ++ W
Sbjct: 276 GDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSW 335
Query: 274 NAMILGLALHGYGYAALKLLGEM---NDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
+++I G A G G A+++ M + V+ D+ITFIG L+ACSHAGL+ +G LF
Sbjct: 336 SSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQS 395
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390
M K FGV ++EHYGCMVDLL RA LL A+ LIE+MP +P ++ GALLS C +H++ E
Sbjct: 396 MHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDE 455
Query: 391 IGDRVAKMVCAK--SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
I VAK + + N + G M+ AN+YA+ G+W++ R M+D G+ K +G S I
Sbjct: 456 IVSHVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWI 515
Query: 449 EVNGSYHKFLAGGIGH 464
E+NG F+ G H
Sbjct: 516 EINGVLCSFMVGEETH 531
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 155/332 (46%), Gaps = 53/332 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY-----GSLR 59
GV A+ +++ LL A G +HG+ + G+ ++YV+T L+ +Y G
Sbjct: 120 GVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDF 179
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ A +F++MP+ +++ WNS+L + G D A K+ D MP ++V ++ IM++G+A+
Sbjct: 180 DLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQ 239
Query: 120 IGKIHSARYIFDKVPAKDV-------------------------------VSW------- 141
G+ A +FD++ V +W
Sbjct: 240 NGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPV 299
Query: 142 -----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM- 195
N+LI Y + G M+ A ++F+++ +N ++W++++TG+ + +E + +F M
Sbjct: 300 LVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLML 359
Query: 196 --KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKC 252
V+PD +T L+AC++ G + G R+ G+ ++D+ ++
Sbjct: 360 CSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRA 419
Query: 253 GSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
G + ++L + +K + W A++ G LH
Sbjct: 420 GLLTEALSLIESMPMKPNNAVWGALLSGCRLH 451
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 150/383 (39%), Gaps = 66/383 (17%)
Query: 85 AFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
A ++ G+ + LK SF + KIH A+ + K+ + N L
Sbjct: 15 AISAIGRSSRVRQQFIFSVLKSCVSFR-------NLAKIH-AQIVVSGFSQKNYI-LNHL 65
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+ Y + G + A ++F+ + + WN ++ G+ RS+ + ++LF M V+ +
Sbjct: 66 LSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANG 125
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA-------------- 250
T + +LSAC G +IH NG SN + T LI++YA
Sbjct: 126 FTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRAR 185
Query: 251 ----------------------KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ G + + +VF + ++V W M+ G A +G
Sbjct: 186 YLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKL 245
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL L +M + V+ D + + LSAC+ G + G + +E+ T + H +V
Sbjct: 246 ALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVER----TWRSRHLPVLV 301
Query: 349 DL-------LGRARLLDRAIELIEAMPFEPTES----ILGALLSACVIHQDLEIGDRVAK 397
L ++D A ++ E +P T S I G C + R+ +
Sbjct: 302 SLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVE-----AIRIFQ 356
Query: 398 -MVCAKSNYLSDGELMMFANLYA 419
M+C+ N + E+ L A
Sbjct: 357 LMLCSGQNEVRPDEITFIGALTA 379
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH----VYVQTALLKMYG 56
M+ GV D + L A L +G +HG +T H V + AL+ MY
Sbjct: 253 MRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYA 312
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
S +D A+KVFE++P+++ ++W+S++ FA G A+++ LM + SG
Sbjct: 313 SCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLM----------LCSG 362
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVIT 171
+ D +++ + A ++AG + +F+ M ++ +
Sbjct: 363 QNEV--------------RPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEH 408
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
+ MV R+ L E + L + M +KP+ ++LS C
Sbjct: 409 YGCMVDLLSRAGLLTEALSLIESMP---MKPNNAVWGALLSGC 448
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 156/472 (33%), Positives = 253/472 (53%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + +++P +L+ + + +G +H Q IKTGF +VYV + L+ MY
Sbjct: 406 MQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGK 465
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+D A + + E D+++W +++ +A A+K M + + S NI IS
Sbjct: 466 LDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISA 525
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A I ++ R I + ++D+ N+L+ Y G +++A F+K+ K+ I+W
Sbjct: 526 CAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISW 585
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N +++G+ +S + + +F +M ++ + T S +SA AN+ +++ G +IH
Sbjct: 586 NGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIK 645
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S+ + ALI YAKCGSIE + F + K+ WNAMI G + HGYG A+ L
Sbjct: 646 RGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNL 705
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M + +TF+G+LSACSH GLV +G F M K+ G+ K HY C+VDL+
Sbjct: 706 FEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLIS 765
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L RA + IE MP EP +I LLSAC +H+++E+G+ A+ + S +
Sbjct: 766 RAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDS-ATYV 824
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N+YA G+W+ ++ R MM + G+ K G S IEV S H F G H
Sbjct: 825 LLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLH 876
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 200/474 (42%), Gaps = 49/474 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ Y F +L + +G LH K G YV AL+ +Y +
Sbjct: 204 MHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPN 263
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
A KVF KM KD +++NS++ A G D A++L M D + ++S
Sbjct: 264 FVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSA 323
Query: 117 YARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A G ++HS Y+ + D++ +L+ Y N +++ A EMF +NV+
Sbjct: 324 CASNGALCKGEQLHS--YVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVV 381
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M+ + + E +F +M+ + P+ T S+L C ++G+L+ G +IH
Sbjct: 382 LWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQV 441
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G N + + LIDMYAK G ++ + + DV W A+I G A H AL
Sbjct: 442 IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEAL 501
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
K EM + +++D+I F +SAC+ + +G ++ ++ G + L +V L
Sbjct: 502 KHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVS-GYSEDLSIGNALVSL 560
Query: 351 LGRARLLDRA---IELIEA-------------------------------MPFEPTESIL 376
R + A E I+A E +
Sbjct: 561 YARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTF 620
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANR 429
G+ +SA +++ G ++ M+ K + SD E+ YA CG E+A R
Sbjct: 621 GSAVSAAANIANIKQGKQIHAMI-IKRGFDSDIEVSNALITFYAKCGSIEDARR 673
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 163/331 (49%), Gaps = 16/331 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LHG+ +K GF + L+ +Y +L +D KVFE MP + + +W+ ++ F
Sbjct: 32 LHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKM 91
Query: 92 MDHAMKLIDLMPLKDVTSFNIMI-------SGYARIG-----KIHSARYIFDKVPAKDVV 139
+ + L M ++V+ I SG+ RIG +IH AR I + ++
Sbjct: 92 SNRVLDLFSCMIEENVSPTEISFASVLRACSGH-RIGIRYAEQIH-ARIICHGLLCSPII 149
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
S N LI Y G + A ++F + K+ ++W M++G+ ++ E + LF EM
Sbjct: 150 S-NPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG 208
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+ P +SVLS C + + G ++H G + + AL+ +Y++ + +
Sbjct: 209 IFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAE 268
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF K Q KD +N++I GLA G+ AL+L +M +K D +T LLSAC+ G
Sbjct: 269 KVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNG 328
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ +G +L S + K G++ + G ++DL
Sbjct: 329 ALCKGEQLHSYVIKA-GISSDMIVEGALLDL 358
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%)
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
+L C N GSL ++H G + L+D+Y G ++ ++VF +
Sbjct: 16 LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRS 75
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
V W+ +I G L L M + V +I+F +L ACS
Sbjct: 76 VRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS 122
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 160/487 (32%), Positives = 253/487 (51%), Gaps = 56/487 (11%)
Query: 32 LHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
+HG K G ++ TALL Y +L A +F++MP+ ++ +M A A+ G
Sbjct: 33 IHGLLFKEGLLHAGSHLPTALLSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASG 92
Query: 91 QMDHAMKLID------LMP----------------------------------------- 103
Q A+ + ++P
Sbjct: 93 QTAQALAVFGDMLADGVLPDNVALAVALAACHGTGSFPAALGMAAARRPGKMVHALIVTS 152
Query: 104 --LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
+ DV +I Y G++ +R +FD +P K VSWN+++ Y + A E+F
Sbjct: 153 GIVPDVFVSTELIRLYGEYGELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELF 212
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN---VKPDYLTVTSVLSACANLG 218
M ++V++WNT++ GY ++E ++LF +M + + V P+ T+++VL+ACA G
Sbjct: 213 LAMPKRDVVSWNTIIAGYCLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAG 272
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMI 277
LETG +H Y N + + +LIDMYAKCGSIE++L+VF K+ K D++ W +I
Sbjct: 273 CLETGIWVHAYIDRNRMNDDGSLDRSLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVI 332
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
GLA+HG AL++ G M D+ ++ DD+T +G+L+AC+H GLV EG F +EK + +
Sbjct: 333 CGLAMHGKAADALRMFGMMQDNGIRPDDVTLVGVLNACAHGGLVDEGLHHFYSLEK-YAI 391
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK 397
T K+EHYGC++DLLGR L A +I M +P I GA L+AC +H ++E+G+ +A
Sbjct: 392 TPKIEHYGCVIDLLGRVGRLQEAYSIIRTMRMKPNAVIWGAFLNACKVHSNVELGE-IAA 450
Query: 398 MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
+ + +M ++LYA W R R MN + KT G S IE++G H+F
Sbjct: 451 AELTRLDPDDPWAKVMLSSLYAKAQDWSSLARERREMNSLQMKKTPGCSSIELDGEVHEF 510
Query: 458 LAGGIGH 464
+AG H
Sbjct: 511 VAGSFQH 517
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 143/317 (45%), Gaps = 49/317 (15%)
Query: 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM 71
SFP L G+ ++ G M+H + +G V+V T L+++YG + + ++F+ M
Sbjct: 128 SFPAAL---GMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGEYGELLVSRRLFDAM 184
Query: 72 PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD 131
P K ++WN+M+ + + A +L MP +DV S+N +I+GY IG+ A +F
Sbjct: 185 PVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGYCLIGRFMEALELFR 244
Query: 132 KV---------PAKDVVS----------------W-----------------NSLILAYT 149
++ P +S W SLI Y
Sbjct: 245 QMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDRNRMNDDGSLDRSLIDMYA 304
Query: 150 NAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G +EKA ++F+K K ++ +W T++ G + + +F M+ ++PD +T+
Sbjct: 305 KCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIRPDDVTLV 364
Query: 209 SVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
VL+ACA+ G ++ G H Y+ + + +ID+ + G ++++ + ++
Sbjct: 365 GVLNACAHGGLVDEGLH-HFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYSIIRTMRM 423
Query: 268 K-DVFCWNAMILGLALH 283
K + W A + +H
Sbjct: 424 KPNAVIWGAFLNACKVH 440
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 159/470 (33%), Positives = 251/470 (53%), Gaps = 60/470 (12%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCI-GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
G D Y+ P LKA L G H K GF G V VQ AL+ YG+ D
Sbjct: 112 GARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGD 171
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI---DLMPLKDVTSFNIMIS----G 116
A KVF++M E+D+++W ++L AF G A+ ++ D+ P +VT +++++ G
Sbjct: 172 ARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDVTP-NEVTLASVLVACGNLG 230
Query: 117 YARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
AR GK +H + F + +++ N+L+ Y +++ A +F +L +++++W M
Sbjct: 231 TARAGKAVHG--WYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVM 288
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
++G ++ + E +++F+ M+ VKPD + +++VLSACA+LG+LE+G +H Y G+
Sbjct: 289 ISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGI 348
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ H T+++DMY KCG ++ ++ +F + +K+V WNA+I G ALHG G AL
Sbjct: 349 EWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDR 408
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M S + +++TFI +L AC H+GLVQEG +LF M K + ++ +HYGCMVDLLGRA
Sbjct: 409 MVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAG 468
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L+ A ++I+AMP P + DR
Sbjct: 469 LIQEAYDVIKAMPMRP-------------------VSDR--------------------- 488
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
W + + R MN+ G+ K GSSVIEVNG +FL G HL
Sbjct: 489 --------WADVGKARGFMNEKGMQKEPGSSVIEVNGKTCEFLVGQQNHL 530
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 118/317 (37%), Gaps = 63/317 (19%)
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+N+LI + T+AG+ A F +LV +
Sbjct: 79 PFNALISSLTHAGDPSAAFRAFALLLVAS--------------------------GAGAG 112
Query: 200 VKPDYLTVTSVLSACANL-GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+PD T+ + L ACA L G L G + H A G AL+ Y CG +
Sbjct: 113 ARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDA 172
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+VF + +DV W A++ G AL +L EM+ V +++T +L AC +
Sbjct: 173 RKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMD---VTPNEVTLASVLVACGNL 229
Query: 319 GLVQEG----------------------CELFSRMEK--------DFGVTRKLEHYGCMV 348
G + G +++ + EK D + R + + M+
Sbjct: 230 GTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMI 289
Query: 349 DLLGRARLLDRAIELIEAMPF---EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
L + + A+E+ AM +P + +L +LSAC LE G V + + K
Sbjct: 290 SGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIE 349
Query: 406 LSDGELMMFANLYASCG 422
++Y CG
Sbjct: 350 WDVHVGTSVVDMYVKCG 366
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D +L A L + G +H + G V+V T+++ MY C
Sbjct: 308 MQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGC 367
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
+D A +F++MP K++ +WN++++ FA G+ A+ D M + +F ++
Sbjct: 368 LDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGA 427
Query: 117 YARIGKIHSARYIFDKV-------PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
G + R +F+ + P +D + ++ AG +++A ++ K M ++ V
Sbjct: 428 CCHSGLVQEGRQLFELMTKSYKLSPWED--HYGCMVDLLGRAGLIQEAYDVIKAMPMRPV 485
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 209/332 (62%), Gaps = 1/332 (0%)
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P K +VS ++I Y G +++A +F + ++ I WN M+ GY + L E + LF
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
+M V+P+ +TV +VLSAC G+LETG +H Y +NG+ N T+LIDMY+KC
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
GS+E + VF + KDV WN+M++G A+HG+ AL+L EM + DITFIG+L
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
+ACSHAGLV EG + F M+ ++G+ K+EHYGCMV+LLGRA L+ A EL++ M +
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRN 432
+ G LL AC +H ++ +G+++A+ + ++ N + G ++ +N+YA+ G WE R R
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQ-NLANSGTYVLLSNIYAAAGNWEGVARVRT 299
Query: 433 MMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+M ++G K G S IEVN H+FLAG + H
Sbjct: 300 LMKESGFEKEPGCSSIEVNNKVHEFLAGDLRH 331
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 10/246 (4%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
TA++ Y ID+A +F+ + E+D I WN M+D +A G + + L M V
Sbjct: 10 TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69
Query: 109 SFNI----MISGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEM 160
+ ++S + G + + R++ + +V SLI Y+ G +E A +
Sbjct: 70 PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
F+++ K+V+ WN+MV GY + + LF EM +P +T VL+AC++ G +
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLV 189
Query: 221 ETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMIL 278
G + D G+ ++++ + G +E++ E+ ++ +D W ++
Sbjct: 190 SEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLG 249
Query: 279 GLALHG 284
LHG
Sbjct: 250 ACRLHG 255
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 108/253 (42%), Gaps = 13/253 (5%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + + +L A G + G +H G +V V T+L+ MY ++DA
Sbjct: 68 VRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDAR 127
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-----KDVTSFNIMISGYARI 120
VFE++ KD++AWNSM+ +A G A++L M + D+T ++ + +
Sbjct: 128 LVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL-NACSHA 186
Query: 121 GKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLV-KNVITWNT 174
G + F + + V + ++ AG +E+A E+ K M + ++ + W T
Sbjct: 187 GLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGT 246
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ G R I + + E + T + + A G+ E AR+ ++G
Sbjct: 247 LL-GACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESG 305
Query: 235 LASNPHATTALID 247
P ++ ++
Sbjct: 306 FEKEPGCSSIEVN 318
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 174/538 (32%), Positives = 262/538 (48%), Gaps = 80/538 (14%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIG--LMLHGQTIKTGFCGHVYVQTALLKMY---GSLRC 60
+ D+YSF LL A G L + + LH +K+G G + V AL+ +Y S
Sbjct: 153 LRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEA 212
Query: 61 IDDAFKVFEKMPEKDI-------------------------------IAWNSMLDAFASC 89
DA KV ++MP KD + WN+M+ +
Sbjct: 213 TRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHS 272
Query: 90 GQMDHAMKLIDLM-----PLKDVT-----------------------------SF----- 110
G A +L M PL + T +F
Sbjct: 273 GMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAA 332
Query: 111 ----NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
N +++ Y++ G I AR IFD + KDVVSWN+++ Y + ++KA E+F++M
Sbjct: 333 LPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
KN ++W MV+GY+ + + LF++M++ NVKP T ++AC LG+L+ G ++
Sbjct: 393 KNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQL 452
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H + G + A ALI MYA+CG+++++ +F D WNAMI L HG+G
Sbjct: 453 HGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHG 512
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL+L M + D I+F+ +L+AC+H+GLV EG F M++DFG+ +HY
Sbjct: 513 REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTR 572
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
++DLLGRA + A +LI+ MPFEPT SI A+LS C D+E+G A + K
Sbjct: 573 LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLF-KMTPQ 631
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
DG ++ +N Y++ G W +A R R +M D G+ K G S IE H FL G H
Sbjct: 632 HDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKH 689
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 12/201 (5%)
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLV--KNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
VS SL+ AY A + A F + ++ + N +++ Y R+ V +F +
Sbjct: 89 VSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148
Query: 197 A-GNVKPDYLTVTSVLSACANLG--SLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
A G+++PD + T++LSA +L S+ A++H +G AL+ +Y KC
Sbjct: 149 ASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCE 208
Query: 254 SIEQSLE---VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
S E + + V + KD W M++G G AA + E++ D+ +
Sbjct: 209 SPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKF----DVVWNA 264
Query: 311 LLSACSHAGLVQEGCELFSRM 331
++S H+G+ E ELF RM
Sbjct: 265 MISGYVHSGMAVEAFELFRRM 285
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 21/254 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V +Y++ + A G L + G LHG ++ GF G AL+ MY
Sbjct: 421 MRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGA 480
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+ +A +F MP D ++WN+M+ A G A++L D M + D SF +++
Sbjct: 481 VKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTA 540
Query: 117 YARIGKIHSA-RYI------FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
G + RY F +P +D + LI AG + +A ++ K M +
Sbjct: 541 CNHSGLVDEGFRYFESMKRDFGIIPGED--HYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598
Query: 170 IT-WNTMVTGYLRS---QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+ W +++G S +L D +M + Y+ +++ SA G AR
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQH-DGTYILLSNTYSAA---GCWVDAAR 654
Query: 226 IHVYATDNGLASNP 239
+ D G+ P
Sbjct: 655 VRKLMRDRGVKKEP 668
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 156/454 (34%), Positives = 242/454 (53%), Gaps = 43/454 (9%)
Query: 29 GLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
G +H +K GF G V V AL+ Y + + +DDA KVF++MPE+D+++W +++D +A
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220
Query: 88 SCGQMDHAMKLIDLMPL----------------------------------------KDV 107
G D A +L M + + V
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSV 280
Query: 108 TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
N ++ + + G + AR +FD + KDV SW S++ AY G++E A ++FK M +
Sbjct: 281 NLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRR 340
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
NV++W+ M+ Y + E V LF EM A V P T+ SVLSACA LG L+ G I+
Sbjct: 341 NVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIY 400
Query: 228 V-YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
Y N + + ALIDM+AKCG + ++ ++F + ++V WN MI+ A+HG
Sbjct: 401 ENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQS 460
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A++L ++ + D ITF+GLL++CSH+GLV EG F ME + + ++EHY C
Sbjct: 461 EEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYAC 520
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
M+DLLG+ LL+ A E+ MP E E+ GALL+AC +H ++EIG VA + + +
Sbjct: 521 MIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKL-VELDPS 579
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
G ++ + +YAS +W++ R M D G V
Sbjct: 580 DSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGTV 613
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 152/323 (47%), Gaps = 44/323 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + + + A G + G+MLH + G V + AL+ M+G C+ A
Sbjct: 240 GMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYA 299
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+VF+ M KD+ +W SM++A+A CG ++ A +L MP ++V S++ MI+ Y+++ +
Sbjct: 300 REVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPE 359
Query: 125 SARYIFDKVPAK----------------------DVVSW------------------NSL 144
A ++F ++ A D+ W N+L
Sbjct: 360 EAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNAL 419
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I + G++ +A ++F +M +NV++WNTM+ + E + LF+++K N+ PD
Sbjct: 420 IDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQ 479
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVF 262
+T +L++C++ G + G R + + P +ID+ K G +E++ EV
Sbjct: 480 ITFLGLLASCSHSGLVSEGRR-YFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVA 538
Query: 263 YKSQVK-DVFCWNAMILGLALHG 284
++ D W A++ +HG
Sbjct: 539 RGMPMEADEAGWGALLNACRMHG 561
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 9/209 (4%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL------GSL 220
N TM+ G+LR++L + LF + + D T + A A G+
Sbjct: 99 PNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTP 158
Query: 221 ETGARIHVYATDNG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
G IH A G + + AL+ YA S++ + +VF + +DV W ++ G
Sbjct: 159 SGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDG 218
Query: 280 LALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
A G A +L M ++ + +T + +SA GL+ G + + + GV
Sbjct: 219 YARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGI-MLHKYVTEGGVA 277
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAM 367
R + +VD+ G+ + A E+ + M
Sbjct: 278 RSVNLDNALVDMFGKCGCVRYAREVFDGM 306
>gi|414589212|tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
Length = 590
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 168/500 (33%), Positives = 251/500 (50%), Gaps = 81/500 (16%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY--------- 55
GV+ + ++F LL+A L + +HGQ ++ GF V VQ ALL +Y
Sbjct: 110 GVYPNGFTFTFLLRACESLRRLFLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCSDPGDV 169
Query: 56 GSLRCIDD-------------------------AFKVFEKMPEKDIIAWNSMLDAFASCG 90
G R + D A ++FE MPE+++++WN+++ AF G
Sbjct: 170 GIARQVFDEMANRDVVSWNSIVGVYMSNGDAAGAMELFEAMPERNVVSWNTIVAAFTRAG 229
Query: 91 QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN 150
M A + D MP++D S+N+MISGYA G + SA +FD + KDVVSW +++ AY
Sbjct: 230 DMVSARAVFDRMPIRDAISWNLMISGYATSGNVESAWSLFDIMDRKDVVSWTAMVSAYAK 289
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTVTS 209
GE++ A +F +M KN+++WN M+TGY + Y + + F +M G PD T+ S
Sbjct: 290 IGELDSARVLFDQMPDKNLVSWNAMITGYNHNLRYDDALCTFQQMMLEGRFMPDEATLVS 349
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHAT----TALIDMYAKCGSIEQSLEVFYKS 265
V+SACA LGS+E I Y + SN H T AL+DM+AKCG + ++ VF K
Sbjct: 350 VVSACAQLGSVEYCNWISSYISK----SNTHITVALGNALVDMFAKCGDVGRAHLVFNKM 405
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ + W MI G A +G AL + +M V DD F+ L AC+H GL+QEG
Sbjct: 406 KTRCTITWTTMISGFAYNGQFREALLVYNDMCREGVTLDDTVFVAALGACAHGGLLQEGW 465
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR-AIELIEAMPFEPTESILGALLSACV 384
+F++M + + ++EHYGC+VDLLGRA L + + +++E PF + +L
Sbjct: 466 SIFNQMVEYCRIVPRMEHYGCIVDLLGRAELSEYVSTKIVEMEPFNSSYQVL-------- 517
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444
+N A G+W+ R M D G+ KT G
Sbjct: 518 -----------------------------VSNCSALEGRWDSVMDARRTMRDCGVEKTPG 548
Query: 445 SSVIEVNGSYHKFLAGGIGH 464
SS+I+V H+FLA H
Sbjct: 549 SSLIQVGNEVHEFLAKDTRH 568
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 154/470 (32%), Positives = 243/470 (51%), Gaps = 13/470 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + +++P +L+ +G +H ++KTGF +YV L+ MY
Sbjct: 336 MQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW 395
Query: 61 IDDAFKVFEKMPEKDIIAWNSML----------DAFASCGQMDHAMKLIDLMPLKDVTSF 110
++ A +V E + EKD+++W SM+ DA A+ +M D + L S
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISG 455
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
I+ + +IH+ Y+ + DV WN+L+ Y G + +A F++M +K+ I
Sbjct: 456 CAGINAMRQGLQIHARIYVSGY--SGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGI 513
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
T N +V+G+ +S L+ E + +F M VK + T S LSA ANL ++ G +IH
Sbjct: 514 TGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARV 573
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G + ALI +Y KCGS E + F + ++ WN +I + HG G AL
Sbjct: 574 IKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEAL 633
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M +K +D+TFIG+L+ACSH GLV+EG F M ++G+ + +HY C++D+
Sbjct: 634 DLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDI 693
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
GRA LDRA + IE MP + LLSAC +H+++E+G+ AK + + S
Sbjct: 694 FGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDS-AS 752
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
++ +N YA +W ++ R MM D G+ K G S IEV H F G
Sbjct: 753 YVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVG 802
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 177/382 (46%), Gaps = 17/382 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV Y +L + G ++H Q K GFC ++V A++ +Y LRC
Sbjct: 134 MHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLY--LRC 191
Query: 61 --IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMI 114
A +VF MP +D + +N+++ A CG +HA+++ + M D + + ++
Sbjct: 192 GSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLL 251
Query: 115 SGYARIG------KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ A +G ++HS Y+F + D + SL+ Y G++E A +F N
Sbjct: 252 AACASLGDLQKGTQLHS--YLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTN 309
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+ WN M+ + + + +LF +M+A ++P+ T +L C ++ G +IH
Sbjct: 310 VVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS 369
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ G S+ + + LIDMY+K G +E++ V + KDV W +MI G H
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKD 429
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL EM + D+I +S C+ +++G ++ +R+ G + + + +V
Sbjct: 430 ALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS-GYSGDVSIWNALV 488
Query: 349 DLLGRARLLDRAIELIEAMPFE 370
+L R + A E M +
Sbjct: 489 NLYARCGRIREAFSSFEEMELK 510
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 168/346 (48%), Gaps = 13/346 (3%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H + + G + V L+ +Y + A +VFE++ +D ++W +ML +A G
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISG----------YARIGKIHSARYIFDKVPAKDVVSW 141
+ A+ L M V ++S +A+ IH+ Y ++
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGF--CSEIFVG 181
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N++I Y G A +F M ++ +T+NT+++G+ + +++F+EM+ +
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +T++S+L+ACA+LG L+ G ++H Y G++S+ +L+D+Y KCG +E +L +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F S +V WN M++ + +L +M + ++ + T+ +L C+ +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
G ++ S + G + G ++D+ + L++A ++E +
Sbjct: 362 DLGEQIHS-LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 156/512 (30%), Positives = 259/512 (50%), Gaps = 53/512 (10%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D++ FP + KA L + +G ++ + GF G+ V+ ++L M+ +D A
Sbjct: 106 GVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIA 165
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG-------- 116
+ FE++ KD+ WN M+ + S G+ A+ + M L+ V +I I+
Sbjct: 166 RRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNL 225
Query: 117 --------------------------------YARIGKIHSARYIFDKVPAKDVVSWNSL 144
YA+ + AR F + D+VSWN++
Sbjct: 226 SLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAM 285
Query: 145 --ILAYTNAGEMEKAGEMFKKMLV----------KNVITWNTMVTGYLRSQLYIEVVDLF 192
+ +T G+ + A E F++M + ++V+ WN++++ +S + +DL
Sbjct: 286 LAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLL 345
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
EM NV+ + +T+ S L AC+ L +L G IH + GL + +LIDMY +C
Sbjct: 346 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRC 405
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
GSI++S +F +D+ WN MI +HG+G A+ L + +K + ITF LL
Sbjct: 406 GSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLL 465
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
SACSH+GL++EG + F M+ ++ + +E Y CMVDLL RA + +E IE MPFEP
Sbjct: 466 SACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPN 525
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRN 432
++ G+LL AC IH + ++ + A+ + + S G ++ AN+Y++ G+WE+A + R
Sbjct: 526 AAVWGSLLGACRIHCNPDLAEYAARYL-FELEPQSSGNYVLMANIYSAAGRWEDAAKIRC 584
Query: 433 MMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+M + G+ K G S IEV H F+ G H
Sbjct: 585 LMKERGVTKPPGCSWIEVKRKLHSFVVGDTSH 616
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 123/519 (23%), Positives = 202/519 (38%), Gaps = 152/519 (29%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
+G +H Q + G ++ + LL++Y C++DA ++F+KM E+++ +W ++++ +
Sbjct: 28 LGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYC 87
Query: 88 SCGQMDHAMKLIDLM------------PL--------------KDVTSF--------NIM 113
G + +KL LM P KDV + N
Sbjct: 88 GLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC 147
Query: 114 ISG-----YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ G + + G++ AR F+++ KDV WN ++ YT+ GE +KA +F+KM+++
Sbjct: 148 VKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLE- 206
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
VKP+ +T+ S +SAC NL L G IH
Sbjct: 207 ------------------------------GVKPNSITIASAVSACTNLSLLRHGREIHG 236
Query: 229 YATD-NGLASNPHATTALIDMYAKCGSIE------------------------------- 256
Y L S+ +L+D YAKC S+E
Sbjct: 237 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGD 296
Query: 257 --QSLEVFYKSQV----------KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
+LE F + + +DV WN++I A G AL LL EMN S V+ +
Sbjct: 297 GKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVN 356
Query: 305 DITFIGLLSACSHAGLVQEGCELF------------------------------SRMEKD 334
+T + L ACS +++G E+ SR D
Sbjct: 357 TVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD 416
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIE---AMPFEPTESILGALLSACVIHQDLEI 391
R L + M+ + G A+ L + M +P LLSAC +E
Sbjct: 417 LMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEE 476
Query: 392 GDRVAKMVCAKSNYLSDGELMMFA---NLYASCGQWEEA 427
G + KM+ K+ Y D + +A +L + GQ+ E
Sbjct: 477 GWKYFKMM--KTEYAMDPAVEQYACMVDLLSRAGQFNET 513
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
S+L C L +L G ++H NG+ + L+++Y + G +E + +F K +
Sbjct: 15 SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+VF W A++ G +KL M + V+ D F + ACS + G +++
Sbjct: 75 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 134
Query: 329 SRMEKDFGVTRKLEHYGC----MVDLLGRARLLDRAIELIEAMPFE 370
D+ ++ E C ++D+ + +D A E + F+
Sbjct: 135 -----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 254/473 (53%), Gaps = 21/473 (4%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D Y+F LKA + G +H QT+K GF +V L MY +D
Sbjct: 165 VGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGL 224
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARIG 121
++FE M ++D+++W +++ + GQ ++A+K M DV+ +F +ISG A +G
Sbjct: 225 RLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLG 284
Query: 122 KIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+I + V + +V NS++ Y+ +++ A +F+ + +++I+W+TM++
Sbjct: 285 RIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMIS 344
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY + E D M+ +P+ SVLS C N+ LE G ++H + GL
Sbjct: 345 GYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQ 404
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
N +ALI+MY+KCGSI+++ ++F +++ ++ W AMI G A HGY A+ L ++
Sbjct: 405 NTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLP 464
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
++ D +TFI +L+ACSHAGLV G F+ + K + +HYGCM+DLL RA L
Sbjct: 465 KVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRL 524
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV------CAKSNYLSDGEL 411
+ A +I++MPF+ + + LL AC IH D++ G R A+ + CA ++
Sbjct: 525 NDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTH------- 577
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YA+ G+W+EA R MM G+VK G S I+ F++G H
Sbjct: 578 ITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDRSH 630
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 165/333 (49%), Gaps = 8/333 (2%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E G+H D + L LKA G+ S G LHG ++KT F V+V +AL+ MY + +D
Sbjct: 61 EPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVD 120
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYA 118
+ VF++MP +++++W +++ G A+ M ++ D +F+ + A
Sbjct: 121 EGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACA 180
Query: 119 RIGKIHSARYIFDKVPAK--DVVSW--NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
G ++ R I + K VS+ N+L Y G+++ +F+ M ++V++W T
Sbjct: 181 DSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTT 240
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ ++ V F M+ +V P+ T +V+S CA LG +E G ++H + G
Sbjct: 241 IIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRG 300
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L + +++ MY+KC ++ + VF +D+ W+ MI G A G G A L
Sbjct: 301 LVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLS 360
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
M + ++ F +LS C + ++++G +L
Sbjct: 361 WMRREGPRPNEFAFASVLSVCGNMAILEQGKQL 393
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/416 (22%), Positives = 179/416 (43%), Gaps = 52/416 (12%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-- 118
+++A ++F+KM ++D I+W +++ + + A+ L M ++ + I A
Sbjct: 17 LNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALK 76
Query: 119 --------RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
G+ +H D V + V S +L+ Y G++++ +FK+M ++NV
Sbjct: 77 ACGLNMSVSFGESLHGYSVKTDFVNSVFVGS--ALVDMYMKIGKVDEGCIVFKEMPLRNV 134
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++W ++ G +R+ E + F +M V D T +S L ACA+ G+L G IH
Sbjct: 135 VSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQ 194
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
G + L MY KCG ++ L +F +DV W +I+ G A
Sbjct: 195 TLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENA 254
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM------------------ 331
+K M ++ V ++ TF ++S C+ G ++ G +L + +
Sbjct: 255 VKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAM 314
Query: 332 -----EKDFGVT-------RKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESIL 376
+ D T R + + M+ + + A + + M E P E
Sbjct: 315 YSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAF 374
Query: 377 GALLSACVIHQDLEIGDRV-AKMVCA--KSNYLSDGELMMFANLYASCGQWEEANR 429
++LS C LE G ++ A ++C + N + L+ N+Y+ CG +EA++
Sbjct: 375 ASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALI---NMYSKCGSIKEASK 427
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 163/355 (45%), Gaps = 22/355 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V + ++F ++ L G LH I+ G + V +++ MY
Sbjct: 261 MRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQ 320
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+D A VF+ + +DII+W++M+ +A G + A + M P + +F ++S
Sbjct: 321 LDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSV 380
Query: 117 YARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ + + + V ++ + ++LI Y+ G +++A ++F + N+++W
Sbjct: 381 CGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSW 440
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY--- 229
M+ GY E +DLF ++ ++PD +T +VL+AC++ G ++ G H +
Sbjct: 441 TAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLG--FHYFNSL 498
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHG---Y 285
+ + + + +ID+ + G + + + +D W+ ++ +HG
Sbjct: 499 SKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDC 558
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
G A + + +++ +C +T I L + + G +E E+ +M K GV ++
Sbjct: 559 GKRAAEKILQLDPNCA----VTHITLANMYAAKGKWKEAAEV-RKMMKSKGVVKE 608
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 116/278 (41%), Gaps = 31/278 (11%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N+++ + G +++AR +FDK+ +D +SW ++I Y N +A +F KM V+
Sbjct: 5 NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVE--- 61
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+ D ++ L AC S+ G +H Y+
Sbjct: 62 ---------------------------PGLHMDPFILSLALKACGLNMSVSFGESLHGYS 94
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
++ +AL+DMY K G +++ VF + +++V W A+I GL GY AL
Sbjct: 95 VKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEAL 154
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+M V D TF L AC+ +G + G E+ + K G T + +
Sbjct: 155 AYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKK-GFTAVSFVANTLATM 213
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQD 388
+ LD + L E+M S ++S I Q+
Sbjct: 214 YNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQE 251
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 167/506 (33%), Positives = 256/506 (50%), Gaps = 52/506 (10%)
Query: 5 GVHADN-----YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
+HAD+ YSF L A +S G +H K+ VY+ TAL+ MY
Sbjct: 137 AMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCE 196
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTS 109
++A KVF+ MPE++I++WNS++ + G +D A+ L D + L V S
Sbjct: 197 RPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMS 256
Query: 110 F------------------------------NIMISGYARIGKIHSARYIFDKVPAKDVV 139
N ++ YA+ G+ A+ +FD++ + VV
Sbjct: 257 ACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVV 316
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
S S+I Y + + A +F +M+ KNV+ WN ++ Y + E + LF +K +
Sbjct: 317 SETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRES 376
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYAT------DNGLASNPHATTALIDMYAKCG 253
V P + T +VL+ACANL +L+ G + HV+ D+G S+ +L+DMY K G
Sbjct: 377 VWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTG 436
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
SI +VF + +D WNAMI+G A +G AL L M S + D +T IG+LS
Sbjct: 437 SISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLS 496
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
AC H+GLV+EG F M +D G+ +HY CM+DLLGRA L ELIE MP EP
Sbjct: 497 ACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDA 556
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
+ +LL AC +H+++++G+ A + + + + G ++ +N+YA G+W + R R
Sbjct: 557 VLWASLLGACRLHKNIDMGEWAAGKLF-ELDPDNSGPYVLLSNMYAELGKWADVFRVRRS 615
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLA 459
M G+ K G S IE+ + FLA
Sbjct: 616 MKHRGVSKQPGCSWIEIGRKVNVFLA 641
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 154/336 (45%), Gaps = 44/336 (13%)
Query: 39 TGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL 98
+ F G ++ LL Y L + DA +VF+ MP ++ ++N++L A A G+ D A+ L
Sbjct: 44 SPFAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALAL 103
Query: 99 IDLMPLKDVTSFNIMISGYARIGK----------IHSARYIF------------------ 130
+P D S+N +++ A+ G+ +H+ ++
Sbjct: 104 FGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKAS 163
Query: 131 ---DKVPA--------KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
++V A DV +L+ Y E+A ++F M +N+++WN+++T Y
Sbjct: 164 RTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCY 223
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY-ATDNGLASN 238
++ E + LF M PD +T+ SV+SACA L + G ++H + +
Sbjct: 224 EQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFRED 283
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
AL+DMYAKCG ++ VF + ++ V +MI G A A + +M +
Sbjct: 284 MVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVE 343
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
V A ++ L++ +H +E LF R++++
Sbjct: 344 KNVVAWNV----LIATYAHNSEEEEALRLFVRLKRE 375
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 120/244 (49%)
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
N ++S YAR+G +H AR +FD +P ++ S+N+L+ A G + A +F + +
Sbjct: 53 LNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQ 112
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++N +V + + + M A + + + S LSACA+ + TG ++H
Sbjct: 113 CSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHAL 172
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
T + S+ + TAL+DMYAKC E++ +VF +++ WN++I +G A
Sbjct: 173 VTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEA 232
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L L M D++T ++SAC+ +EG ++ +RM K + +VD
Sbjct: 233 LALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVD 292
Query: 350 LLGR 353
+ +
Sbjct: 293 MYAK 296
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 168/511 (32%), Positives = 257/511 (50%), Gaps = 52/511 (10%)
Query: 5 GVHADN-----YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
+HAD+ YSF L A S G+ +H K+ VY+ +ALL MY
Sbjct: 882 AMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCE 941
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTS 109
++A +VFE MPE++I++WNS++ + G + A+ L D + L V S
Sbjct: 942 WPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMS 1001
Query: 110 F------------------------------NIMISGYARIGKIHSARYIFDKVPAKDVV 139
N ++ YA+ G+ +AR +FD++ ++ VV
Sbjct: 1002 ACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVV 1061
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
S SLI Y + +E A +F +M+ KNVI WN ++ Y ++ E + LF +K +
Sbjct: 1062 SETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRES 1121
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHV------YATDNGLASNPHATTALIDMYAKCG 253
V P + T +VL+AC N+ L+ G + HV + D G S+ +L+DMY K G
Sbjct: 1122 VWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 1181
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
SI+ +VF + +D WNAMI+G A +G AL L M S D +T IG+LS
Sbjct: 1182 SIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLS 1241
Query: 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
AC H+GLV+EG F M +D G+ +HY CM+DLLGRA L ELI+ M EP
Sbjct: 1242 ACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDA 1301
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
+ +LL +C +H+++E+G+ A + + + + G ++ +N+YA G+W + R R+
Sbjct: 1302 VLWASLLGSCRLHKNVEMGEWAAGKL-FELDPRNSGPYVLLSNMYAELGKWADVFRVRSS 1360
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M G+ K G S IE+ FLA GH
Sbjct: 1361 MKHRGVSKQPGCSWIEIGRKVSVFLARDNGH 1391
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 205/412 (49%), Gaps = 43/412 (10%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H ++ G+ HV+V+++++ MY +D A +F P KD++ S++ AS
Sbjct: 271 GRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLAS 330
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----DVVSWNSL 144
CG++ A ++ + M +++ S+N M++GY R + A +F ++ + D ++ S+
Sbjct: 331 CGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSV 390
Query: 145 ILAYTNAGEMEKAGEM---------FKKMLVKNVI------------------------- 170
+ A T ++ K E+ F ++KN +
Sbjct: 391 LSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSER 450
Query: 171 ---TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+WN++++GY R + + +M++ V P+ T +S L+ACAN+ L+ G +IH
Sbjct: 451 DSYSWNSLISGYERHSMSEAALYALTKMQS-EVTPNQSTFSSALAACANIFLLKQGMQIH 509
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
Y G + + LIDMY KC + S+ +F +DV WN+MI G A G G
Sbjct: 510 AYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGE 569
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
L L EM +KAD +TF+G L +C G V+ G F+ M D + ++EHY CM
Sbjct: 570 YGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLM-MDESIIPRIEHYECM 628
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
++LLG+ + + +E MPFEPT ++ + C + + ++G+R AK +
Sbjct: 629 IELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCI 680
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 190/410 (46%), Gaps = 45/410 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ + + +L C LHG K F +V + TAL+ +YG+
Sbjct: 142 MNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFL 201
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PLKDVTSFNIM- 113
+ DA + F+ + E + I+WN ++ + G D A+ + M PL S ++
Sbjct: 202 LADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLA 261
Query: 114 --------------------------------ISGYARIGKIHSARYIFDKVPAKDVVSW 141
+ YA+ G + +A+ +F+ P KD+V
Sbjct: 262 CRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMS 321
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ + G + A +F+ M +N+++WN M+TGY+RS + LF +M+ +
Sbjct: 322 TSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETRE 381
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE--QSL 259
D +T+ SVLSAC + + G +H +A G S+P AL+ MY+KCG + + L
Sbjct: 382 FDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERL 441
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F +D + WN++I G H AAL L +M S V + TF L+AC++
Sbjct: 442 LLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQ-SEVTPNQSTFSSALAACANIF 500
Query: 320 LVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
L+++G ++ + M K + + L ++D+ + R D +I + EA P
Sbjct: 501 LLKQGMQIHAYMIRKGYEIDDILR--SVLIDMYCKCRQFDYSIRIFEARP 548
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 3/249 (1%)
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
N ++S YAR+G++ AR +FD++P + S+N+L+ A+ G A +F + +
Sbjct: 798 LNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQ 857
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++N ++ + + + M A + + + S LSACA TG ++H
Sbjct: 858 CSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHAL 917
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ + A + + +AL+DMYAKC E++ VF +++ WN++I +G A
Sbjct: 918 VSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEA 977
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L L M + D++T ++SAC+ +EG ++ +R+ K + +VD
Sbjct: 978 LVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVD 1037
Query: 350 LL---GRAR 355
+ GR R
Sbjct: 1038 MYAKCGRTR 1046
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 145/331 (43%), Gaps = 48/331 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLR 59
M + G D + ++ A L++ G +H + +K+ F + + AL+ MY
Sbjct: 984 MMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCG 1043
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
A VF++M + +++ S++ +A ++ A + M K+V ++N++I+ YA+
Sbjct: 1044 RTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQ 1103
Query: 120 IGK-------------------------------------------IHSAR--YIFDKVP 134
G+ +H + + FD P
Sbjct: 1104 NGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGP 1163
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
DV NSL+ Y G ++ ++F++M ++ ++WN M+ G+ ++ + + LF+
Sbjct: 1164 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFER 1223
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT-DNGLASNPHATTALIDMYAKCG 253
M PD +T+ VLSAC + G +E G R T D+G+ + T +ID+ + G
Sbjct: 1224 MLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAG 1283
Query: 254 SIEQSLEVFYK-SQVKDVFCWNAMILGLALH 283
+++ E+ + S D W +++ LH
Sbjct: 1284 HLKEVEELIKEMSMEPDAVLWASLLGSCRLH 1314
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 104/457 (22%), Positives = 177/457 (38%), Gaps = 108/457 (23%)
Query: 79 WNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK-----V 133
+N +++ A+CG + A +L DLMPL+D S+N +I+ +R G A +F +
Sbjct: 88 FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147
Query: 134 PAKD----------------------------------VVSWNSLILAYTNAGEMEKAGE 159
KD V+ +L+ Y N + A
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARR 207
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
F +L N I+WN +V Y + + VD+F M + V+P TV+ + AC + +
Sbjct: 208 AFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNA 267
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD---------- 269
LE G IH + +G + H ++++DMYAKCG+++ + +F + +KD
Sbjct: 268 LEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSG 327
Query: 270 ---------------------VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
+ WNAM+ G AL L +M + D IT
Sbjct: 328 LASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITL 387
Query: 309 IGLLSACS-----------HAGLVQEGCELFS---------RMEKDFGVTRKLEH----- 343
+LSAC+ HA ++ C FS RM G R E
Sbjct: 388 GSVLSACTGILDIGKGEEVHAFAIK--CGFFSSPILKNALVRMYSKCGCLRSAERLLLFE 445
Query: 344 ---------YGCMVDLLGRARLLDRAIELIEAMPFE--PTESILGALLSACVIHQDLEIG 392
+ ++ R + + A+ + M E P +S + L+AC L+ G
Sbjct: 446 MGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQG 505
Query: 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
++ + K + D + ++Y C Q++ + R
Sbjct: 506 MQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIR 542
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 20/251 (7%)
Query: 21 GILSSSCIGLM-------LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK--VFEKM 71
G + S+C G++ +H IK GF ++ AL++MY C+ A + +FE
Sbjct: 388 GSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMG 447
Query: 72 PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---LKDVTSFNIMISGYARIG------K 122
E+D +WNS++ + + A+ + M + ++F+ ++ A I +
Sbjct: 448 SERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQGMQ 507
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
IH+ Y+ K D + + LI Y + + + +F+ ++VI WN+M+ G S
Sbjct: 508 IHA--YMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYS 565
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
+DLFDEM+ +K D +T L +C + G + G D +
Sbjct: 566 GKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHY 625
Query: 243 TALIDMYAKCG 253
+I++ K G
Sbjct: 626 ECMIELLGKHG 636
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/470 (34%), Positives = 247/470 (52%), Gaps = 46/470 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D+Y++P +LKA + IGL LHG K G +++V L+ +YG
Sbjct: 128 GFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGK------- 180
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
CG + A ++D M KDV S+N M++GYA+ +
Sbjct: 181 ------------------------CGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFD 216
Query: 125 SARYI---FDKVPAK-DVVSWNSLILAYTNAGEME--KAGEMFKKMLVKNVITWNTMVTG 178
A I D V K D + SL+ A TN EMF + K++++WN M++
Sbjct: 217 DALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISV 276
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y+++ + + VDL+ +M V+PD +T SVL AC +L +L G RIH Y L N
Sbjct: 277 YMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPN 336
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+LIDMYA+CG +E + VF + + +DV W ++I + G GY A+ L EM +
Sbjct: 337 MLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQN 396
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
S D I F+ +LSACSH+GL+ EG F +M D+ +T +EH+ C+VDLLGR+ +D
Sbjct: 397 SGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVD 456
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMF 414
A +I+ MP +P E + GALLS+C ++ +++IG D++ ++ +S Y ++
Sbjct: 457 EAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGY-----YVLL 511
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G+W E R++M I K G S +E+N H FLAG H
Sbjct: 512 SNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYH 561
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 26/317 (8%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ AY GE A +F + +NVI +N M+ Y+ + LY + + +F +M +G PD
Sbjct: 73 LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ T VL AC+ +L G ++H GL N LI +Y KCG + ++ V
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG---- 319
+ Q KDV WN+M+ G A + AL + EM+ K D T LL A ++
Sbjct: 193 EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV 252
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESIL 376
L E E+F +EK + L + M+ + + + ++++L M EP
Sbjct: 253 LYVE--EMFMNLEK-----KSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITC 305
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYASCGQWEEANR---- 429
++L AC L +G R+ + V K N L + L+ ++YA CG E+A R
Sbjct: 306 ASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLI---DMYARCGCLEDAKRVFDR 362
Query: 430 --WRNMMNDTGIVKTAG 444
+R++ + T ++ G
Sbjct: 363 MKFRDVASWTSLISAYG 379
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 93/188 (49%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V D + +L+A G LS+ +G +H + C ++ ++ +L+ MY C
Sbjct: 293 MGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGC 352
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
++DA +VF++M +D+ +W S++ A+ GQ +A+ L M D +F ++S
Sbjct: 353 LEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSA 412
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G ++ ++ F ++ ++ + L+ +G +++A + K+M +K N
Sbjct: 413 CSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNER 472
Query: 171 TWNTMVTG 178
W +++
Sbjct: 473 VWGALLSS 480
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 127/335 (37%), Gaps = 79/335 (23%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA----------------------- 118
++ A+A+ G+ A + D++P ++V +N+MI Y
Sbjct: 73 LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132
Query: 119 -----------------RIG-KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEM 160
RIG ++H A +F ++ N LI Y G + +A +
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGA--VFKVGLDLNLFVGNGLIALYGKCGCLPEARCV 190
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
+M K+V++WN+MV GY ++ + + +D+ EM KPD T+ S+L A N S
Sbjct: 191 LDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSE 250
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
+Y + E+F + K + WN MI
Sbjct: 251 NV-------------------------LYVE--------EMFMNLEKKSLVSWNVMISVY 277
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME-KDFGVTR 339
+ ++ L +M V+ D IT +L AC + G + +E K
Sbjct: 278 MKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNM 337
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
LE+ ++D+ R L+ A + + M F S
Sbjct: 338 LLEN--SLIDMYARCGCLEDAKRVFDRMKFRDVAS 370
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/475 (33%), Positives = 254/475 (53%), Gaps = 13/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G D +SFP +LK+ LS G LH I+ G +V TAL+ MY
Sbjct: 41 MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGL 100
Query: 61 IDDAFKVFEKMPEKDI--IAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
++DA KVFE+ P + +N+++ + + ++ A + M V+ ++ I G
Sbjct: 101 VEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLV 160
Query: 119 RIGKIHSARYIFDKVPAK--------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ + ++ + + +V NS I Y G +E +F +M VK +I
Sbjct: 161 PLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLI 220
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TWN +++GY ++ L +V++LF++MK+ V PD T+ SVLS+CA+LG+ + G +
Sbjct: 221 TWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELV 280
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
NG A N + ALI MYA+CG++ ++ VF VK + W AMI +HG G L
Sbjct: 281 EANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGL 340
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M ++ D F+ +LSACSH+GL +G ELF M++++ + EHY C+VDL
Sbjct: 341 TLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDL 400
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDG 409
LGRA LD A+E I++MP EP ++ GALL AC IH+++++ + AK++ + ++ G
Sbjct: 401 LGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVI--EFEPMNIG 458
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+Y+ E R R MM + K G S +E G H FLAG H
Sbjct: 459 YYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSH 513
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 125/316 (39%), Gaps = 57/316 (18%)
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN + L+ E + L+ M PD + +L +CA+L +G ++H +
Sbjct: 17 SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVF----YKSQVKDVFCWNAMILGLALHGYG 286
G + P TALI MY KCG +E + +VF + SQ+ C+NA+I G +
Sbjct: 77 IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLG--VCYNALISGYTANSKV 134
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACS------------------------------ 316
A + M ++ V D +T +GL+ C+
Sbjct: 135 SDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSF 194
Query: 317 -----HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE- 370
G V+ G LF M + L + ++ + L +EL E M
Sbjct: 195 ITMYMKCGSVESGRRLFDEMP-----VKGLITWNAVISGYSQNGLAYDVLELFEQMKSSG 249
Query: 371 --PTESILGALLSACVIHQDLEIGDRVAKMV----CAKSNYLSDGELMMFANLYASCGQW 424
P L ++LS+C +IG V ++V A + +LS+ + M YA CG
Sbjct: 250 VCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISM----YARCGNL 305
Query: 425 EEANRWRNMMNDTGIV 440
+A ++M +V
Sbjct: 306 AKARAVFDIMPVKSLV 321
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 247/429 (57%), Gaps = 13/429 (3%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP--------EKDIIAWNS 81
L+ +G + G Y L+ YG +A K+F+++P +++I+WNS
Sbjct: 237 LLQYGGNVGKGDLVDAY--NTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNS 294
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
M+ + G + A +L D M +D S+N MISGY +I + A +F ++P D +SW
Sbjct: 295 MIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSW 354
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N +I ++ G ++ A ++FK++ K++++WN+M++GY +++ Y +++F +M+ K
Sbjct: 355 NMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKK 414
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T++S+LSACA L L G +IH T +A P +L+ MY++CG+I ++ V
Sbjct: 415 PDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLP-INNSLVTMYSRCGAIVEARMV 473
Query: 262 FYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F + + +DV WNAMI G A HG+ AL+L M V+ ITFI +L+AC+HAGL
Sbjct: 474 FDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGL 533
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
++EG F+ M G+ ++EHY +VD++GR L+ A+ LI +MP EP +++ GALL
Sbjct: 534 IEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALL 593
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
AC +H ++E+ R A K S ++ N+YA G+W++A R MM +
Sbjct: 594 GACKVHNNVEMA-RAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQ 652
Query: 441 KTAGSSVIE 449
K AG S ++
Sbjct: 653 KDAGYSRVD 661
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 189/402 (47%), Gaps = 34/402 (8%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ--MDHAMKLIDLMPLKDVT 108
++ Y R + A ++FE+MP +DI++WN ML + SCG ++ A + D MP D
Sbjct: 94 MITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCV 153
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N M+SGYA+ G + A +F+++P ++VVSWN+++ Y G +EKA E FK M ++
Sbjct: 154 SWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRD 213
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPDYLTVTSVLSACANLGSLETGARIH 227
+ +V+G +++ +E + + GNV K D + + L A + AR
Sbjct: 214 SASLRALVSGLIQNDKLVEAERILLQY-GGNVGKGDLVDAYNTLIAGYGQKGMAYEARKL 272
Query: 228 V----------YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
Y+ N ++ N ++I Y + G I + E+F K +D F WN MI
Sbjct: 273 FDRIPLCCDCGYSRRNVISWN-----SMIMCYVRAGDIVSARELFDKMVERDTFSWNTMI 327
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
G A L M + D +++ ++S S G ++ +LF R+ +
Sbjct: 328 SGYVQILDMKEASNLFSRMPE----PDTLSWNMMISGFSEIGSLKLAHDLFKRIPE---- 379
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDR 394
+ L + M+ + A+ + M E P L ++LSAC DL +G +
Sbjct: 380 -KSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQ 438
Query: 395 VAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMN 435
+ ++V +++D + +Y+ CG EA + MN
Sbjct: 439 IHQLVTKA--FIADLPINNSLVTMYSRCGAIVEARMVFDEMN 478
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 130/270 (48%), Gaps = 14/270 (5%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ + S N IS R G+I+ AR +FD + ++WN +I AY EM KA ++F++
Sbjct: 54 VPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEE 113
Query: 164 MLVKNVITWNTMVTGYLR--SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
M +++++WN M++GY+ + ++FD+M + D ++ ++LS A G+++
Sbjct: 114 MPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMP----ETDCVSWNTMLSGYAKSGTMD 169
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
+ + + S A++ Y G +E+++E F +D A++ GL
Sbjct: 170 KAEELFNEMPERNVVS----WNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLI 225
Query: 282 LHGYGYAALKLLGEMNDSCVKADDI-TFIGLLSACSHAGLVQEGCELFSRMEK--DFGVT 338
+ A ++L + + K D + + L++ G+ E +LF R+ D G +
Sbjct: 226 QNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYS 285
Query: 339 RK-LEHYGCMVDLLGRARLLDRAIELIEAM 367
R+ + + M+ RA + A EL + M
Sbjct: 286 RRNVISWNSMIMCYVRAGDIVSARELFDKM 315
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/473 (34%), Positives = 251/473 (53%), Gaps = 18/473 (3%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
LGV D + +L A + + +G LHG +K F V LL MY ++
Sbjct: 290 LGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNG 349
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYAR 119
A +VF KM + I++W S++ A+ G A+ L D M K D+ + ++ A
Sbjct: 350 ATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACAC 409
Query: 120 IGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ R Y+ ++ N+LI Y G +E+A +F K+ VK++++WNTM
Sbjct: 410 SSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTM 469
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ GY ++ L E ++LF +M+ KPD +T+ VL ACA L +L+ G IH + G
Sbjct: 470 IGGYSQNLLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGY 528
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
S+ H AL+DMYAKCG + + +F KD+ W MI G +HG+G A+ E
Sbjct: 529 FSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNE 588
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + ++ D+ +F +L+ACSH+GL+ EG + F+ M + GV KLEHY C+VDLL R
Sbjct: 589 MRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMG 648
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA----KSNYLSDGEL 411
L +A + IE+MP +P +I G LLS C IH D+++ ++VA+ + + Y
Sbjct: 649 NLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRY-----Y 703
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ AN+YA +WEE + R M G + G S IEV G ++ F+AG H
Sbjct: 704 VVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKH 756
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 199/377 (52%), Gaps = 12/377 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+LGV + Y+F +LK L +HG +K GF + V +L+ Y
Sbjct: 186 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGG 245
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
++ A +F+++ E D+++WNSM++ G + +++ M + D+T+ ++
Sbjct: 246 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 305
Query: 117 YARIGKIHSARYI----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A IG + R + +++VV N+L+ Y+ G + A E+F KM +++W
Sbjct: 306 CANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 365
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ Y+R LY + + LFDEM++ V+PD TVTS++ ACA SL+ G +H Y
Sbjct: 366 TSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 425
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NG+ SN T ALI+MYAKCGS+E++ VF K VKD+ WN MI G + + AL+L
Sbjct: 426 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALEL 485
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC-MVDLL 351
+M K DDIT +L AC+ + +G E+ + + G L H C +VD+
Sbjct: 486 FLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRR-GYFSDL-HVACALVDMY 542
Query: 352 GRARLLDRAIELIEAMP 368
+ LL A L + +P
Sbjct: 543 AKCGLLVLAQLLFDMIP 559
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/436 (23%), Positives = 189/436 (43%), Gaps = 44/436 (10%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H I G + L+ MY + + K+F+K+ + WN ++ +A
Sbjct: 113 GKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAK 172
Query: 89 CGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKDVVS 140
G ++ L M + + +F ++ +A +GK+ + Y+ +
Sbjct: 173 IGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV 232
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
NSLI AY G +E A +F ++ +V++WN+M+ G + + +++F +M V
Sbjct: 233 VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 292
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+ D T+ SVL ACAN+G+L G +H + + + L+DMY+KCG++ + E
Sbjct: 293 EVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATE 352
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF K + W ++I G A+ L EM V+ D T ++ AC+ +
Sbjct: 353 VFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 412
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR------ARLL----------------- 357
+ +G ++ S + K+ G+ L ++++ + ARL+
Sbjct: 413 LDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG 471
Query: 358 --------DRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
+ A+EL M F+P + + +L AC L+ G + + + Y S
Sbjct: 472 GYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHI-LRRGYFS 530
Query: 408 DGELM-MFANLYASCG 422
D + ++YA CG
Sbjct: 531 DLHVACALVDMYAKCG 546
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 9/292 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D Y+ ++ A SS G +H IK G ++ V AL+ MY
Sbjct: 388 MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGS 447
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGY 117
+++A VF K+P KDI++WN+M+ ++ + A++L M + D + ++
Sbjct: 448 VEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPAC 507
Query: 118 ARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
A + + R I + + D+ +L+ Y G + A +F + K++I+W
Sbjct: 508 AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWT 567
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYATD 232
M+ GY E + F+EM+ ++PD + +++L+AC++ G L G + + +
Sbjct: 568 VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNE 627
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
G+ ++D+ A+ G++ ++ + +K D W ++ G +H
Sbjct: 628 CGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIH 679
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
SVL CA SLE G R+H NG++ + L+ MY CG + Q ++F K
Sbjct: 99 SVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 158
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
VF WN ++ A G ++ L +M V + TF +L + G V+E
Sbjct: 159 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE 213
>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 247/429 (57%), Gaps = 13/429 (3%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP--------EKDIIAWNS 81
L+ +G + G Y L+ YG +A K+F+++P +++I+WNS
Sbjct: 237 LLQYGGNVGKGDLVDAY--NTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNS 294
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
M+ + G + A +L D M +D S+N MISGY +I + A +F ++P D +SW
Sbjct: 295 MIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSW 354
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N +I ++ G ++ A ++FK++ K++++WN+M++GY +++ Y +++F +M+ K
Sbjct: 355 NMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKK 414
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T++S+LSACA L L G +IH T +A P +L+ MY++CG+I ++ V
Sbjct: 415 PDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLP-INNSLVTMYSRCGAIVEARMV 473
Query: 262 FYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F + + +DV WNAMI G A HG+ AL+L M V+ ITFI +L+AC+HAGL
Sbjct: 474 FDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGL 533
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
++EG F+ M G+ ++EHY +VD++GR L+ A+ LI +MP EP +++ GALL
Sbjct: 534 IEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALL 593
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
AC +H ++E+ R A K S ++ N+YA G+W++A R MM +
Sbjct: 594 GACKVHNNVEMA-RAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQ 652
Query: 441 KTAGSSVIE 449
K AG S ++
Sbjct: 653 KDAGYSRVD 661
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/402 (26%), Positives = 189/402 (47%), Gaps = 34/402 (8%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ--MDHAMKLIDLMPLKDVT 108
++ Y R + A ++FE+MP +DI++WN ML + SCG ++ A + D MP D
Sbjct: 94 MITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCV 153
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N M+SGYA+ G + A +F+++P ++VVSWN+++ Y G +EKA E FK M ++
Sbjct: 154 SWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRD 213
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPDYLTVTSVLSACANLGSLETGARIH 227
+ +++G +++ +E + + GNV K D + + L A + AR
Sbjct: 214 SASLRALISGLIQNDKLVEAERILLQY-GGNVGKGDLVDAYNTLIAGYGQKGMAYEARKL 272
Query: 228 V----------YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
Y+ N ++ N ++I Y + G I + E+F K +D F WN MI
Sbjct: 273 FDRIPLCCDCGYSRRNVISWN-----SMIMCYVRAGDIVSARELFDKMVERDTFSWNTMI 327
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337
G A L M + D +++ ++S S G ++ +LF R+ +
Sbjct: 328 SGYVQILDMKEASNLFSRMPE----PDTLSWNMMISGFSEIGSLKLAHDLFKRIPE---- 379
Query: 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDR 394
+ L + M+ + A+ + M E P L ++LSAC DL +G +
Sbjct: 380 -KSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQ 438
Query: 395 VAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMN 435
+ ++V +++D + +Y+ CG EA + MN
Sbjct: 439 IHQLVTKA--FIADLPINNSLVTMYSRCGAIVEARMVFDEMN 478
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 129/270 (47%), Gaps = 14/270 (5%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ + S N IS R G+I+ AR +FD + ++WN +I AY EM KA ++F++
Sbjct: 54 VPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEE 113
Query: 164 MLVKNVITWNTMVTGYLR--SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
M +++++WN M++GY+ + ++FD+M + D ++ ++LS A G ++
Sbjct: 114 MPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMP----ETDCVSWNTMLSGYAKSGMMD 169
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
+ + + S A++ Y G +E+++E F +D A+I GL
Sbjct: 170 KAEELFNEMPERNVVS----WNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLI 225
Query: 282 LHGYGYAALKLLGEMNDSCVKADDI-TFIGLLSACSHAGLVQEGCELFSRMEK--DFGVT 338
+ A ++L + + K D + + L++ G+ E +LF R+ D G +
Sbjct: 226 QNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYS 285
Query: 339 RK-LEHYGCMVDLLGRARLLDRAIELIEAM 367
R+ + + M+ RA + A EL + M
Sbjct: 286 RRNVISWNSMIMCYVRAGDIVSARELFDKM 315
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/410 (36%), Positives = 236/410 (57%), Gaps = 13/410 (3%)
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQM--------DHAMKLIDLMPLKDVTSFNIMISGY 117
++ +K P D + +ML A+C Q+ HA L + + D S N +I Y
Sbjct: 322 EMLQKGPRPDKV---TMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNIS-NAIIDMY 377
Query: 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ GK +A +F+ +P K VV+WNSLI G+ME A +F +ML +++++WNTM+
Sbjct: 378 MKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIG 437
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
++ ++ E ++LF EM+ + D +T+ + SAC LG+L+ + Y N +
Sbjct: 438 ALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHV 497
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ TAL+DM+++CG ++ VF + + +DV W A I +A+ G A++L EM
Sbjct: 498 DLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEML 557
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ VK DD+ F+ LL+ACSH G V +G +LF MEK G+ + HYGCMVDLLGRA LL
Sbjct: 558 EQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLL 617
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
+ A++LI++MP EP + + G+LL+AC H+++E+ A+ + + G ++ +N+
Sbjct: 618 EEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERV-GIHVLLSNI 676
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
YAS G+W + R R M + G+ K GSS IEV G H+F +G H N
Sbjct: 677 YASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAEN 726
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 169/337 (50%), Gaps = 12/337 (3%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
+G+ D Y+FP LL A + + G+ +HG +K G G ++V +L+ Y +D
Sbjct: 124 MGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDL 183
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYAR 119
K+F+ M E+++++W S+++ ++ A+ L M V + +IS A+
Sbjct: 184 GRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAK 243
Query: 120 IGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ + + YI + + N+L+ Y G++ A ++F + KN++ +NT+
Sbjct: 244 LKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTI 303
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
++ Y+ + +V+ + DEM +PD +T+ S ++ACA LG L G H Y NGL
Sbjct: 304 MSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGL 363
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ + A+IDMY KCG E + +VF K V WN++I GL G A ++ E
Sbjct: 364 EGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDE 423
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
M ++ D +++ ++ A + +E ELF M+
Sbjct: 424 M----LERDLVSWNTMIGALVQVSMFEEAIELFREMQ 456
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 168/354 (47%), Gaps = 20/354 (5%)
Query: 56 GSLRCIDDAFKVF--EKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTS 109
G+L +D A F + + +N ++ +AS G D A+ +++ + + D +
Sbjct: 73 GTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYT 132
Query: 110 FNIMISGYARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
F ++S ++I + + V D+ NSLI Y G+++ ++F ML
Sbjct: 133 FPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGML 192
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+NV++W +++ GY L E V LF +M V+P+ +T+ V+SACA L LE G +
Sbjct: 193 ERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKK 252
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+ Y ++ G+ + AL+DMY KCG I + ++F + K++ +N ++ H +
Sbjct: 253 VCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEW 312
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY- 344
L +L EM + D +T + ++AC+ G + G + + + LE +
Sbjct: 313 ASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVG-----KSSHAYVLRNGLEGWD 367
Query: 345 ---GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395
++D+ + + A ++ E MP T +L++ V D+E+ R+
Sbjct: 368 NISNAIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIAGLVRDGDMELAWRI 420
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR---- 119
A+++F++M E+D+++WN+M+ A + A++L M + + + + G A
Sbjct: 417 AWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGY 476
Query: 120 IGKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+G + A+++ + D+ +L+ ++ G+ A +FK+M ++V W T
Sbjct: 477 LGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAW-TA 535
Query: 176 VTGYLRSQLYIE-VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
G + + E ++LF+EM VKPD + ++L+AC++ GS++ G ++ ++ +
Sbjct: 536 AIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQL-FWSMEKA 594
Query: 235 LASNPHATT--ALIDMYAKCGSIEQSLEVFYKSQVK--DVFCWNAMILGLALHG----YG 286
PH ++D+ + G +E+++++ ++ DV W +++ H
Sbjct: 595 HGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVV-WGSLLAACRKHKNVELAH 653
Query: 287 YAALKL 292
YAA KL
Sbjct: 654 YAAEKL 659
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 112/256 (43%), Gaps = 17/256 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D + + A G L + + + K + + TAL+ M+ RC
Sbjct: 455 MQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFS--RC 512
Query: 61 ID--DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----FNIMI 114
D A VF++M ++D+ AW + + A G + A++L + M + V F ++
Sbjct: 513 GDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALL 572
Query: 115 SGYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
+ + G + R +F + +V + ++ AG +E+A ++ + M ++ N
Sbjct: 573 TACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPN 632
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-ANLGSLETGARIH 227
+ W +++ R +E+ E K + P+ + + +LS A+ G AR+
Sbjct: 633 DVVWGSLLAA-CRKHKNVELAHYAAE-KLTQLAPERVGIHVLLSNIYASAGKWTDVARVR 690
Query: 228 VYATDNGLASNPHATT 243
+ + G+ P +++
Sbjct: 691 LQMKEKGVQKVPGSSS 706
>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
Length = 529
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 232/392 (59%), Gaps = 3/392 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A +FE MPE+D+++WNSM+ A G +D A++L D MP + S+N ++SG+
Sbjct: 138 ITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNALVSGFMAQ 197
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A+ +F+++P ++ VSW ++I Y AG+++ A +F +M K++ WN M++ Y
Sbjct: 198 GHLAQAQELFERMPIRNNVSWITMISGYAKAGDVQAAANLFDRMDSKDLYAWNAMISCYA 257
Query: 181 RSQLYIEVVDLFDEMKAGN--VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
++ E + +F+ M + V P+ T +SV+SAC+ LG L G + + G+ +
Sbjct: 258 QNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDLRFGLWVESFMGYVGVHLD 317
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
H TALID+Y K G ++++ ++F + +DV ++AMI+G +HG A+ L EM+
Sbjct: 318 DHLRTALIDLYTKSGQMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAISLFKEMSK 377
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ + + +TF+GLLSA SHAGL++E F+ M + + +EHY MVD+LGR L+
Sbjct: 378 ARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMSSKYKINPSMEHYTIMVDILGRCGKLE 437
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A +LI +P P S+ GALL AC +H ++E+G+ VA C + G ++ N+Y
Sbjct: 438 EAFQLIMQIPVCPHASVWGALLLACRLHNNIELGE-VAASKCFELEPKESGYYILLGNIY 496
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
A +W++ R MM + G+ KT GSS + V
Sbjct: 497 AQAKKWDKVKGLRKMMAERGLSKTPGSSWVHV 528
>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 579
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 236/436 (54%), Gaps = 33/436 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DAF+ PEK+ ++N+++ A CG+M A +L + MP +V S+ M+ GYAR+
Sbjct: 107 LQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARV 166
Query: 121 -GKIHSARYIFDKVPAKDVVSW-------------------------------NSLILAY 148
G I AR +F+ +P ++ VSW ++I +
Sbjct: 167 EGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQKNDVARTAMITGF 226
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G ME A ++F+++ +++++WN ++TGY ++ E ++LF +M ++PD LT
Sbjct: 227 CKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFV 286
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
SV ACA+L SLE G++ H +G S+ ALI +++KCG I S VF +
Sbjct: 287 SVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHP 346
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
D+ WN +I A HG A +M V+ D ITF+ LLSAC AG V E LF
Sbjct: 347 DLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLF 406
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQD 388
S M ++G+ + EHY C+VD++ RA L RA ++I MPF+ SI GA+L+AC +H +
Sbjct: 407 SLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVHLN 466
Query: 389 LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+E+G+ A+ + + S G +M +N+YA+ G+W++ +R R +M + G+ K S +
Sbjct: 467 VELGELAARRILNLDPFNS-GAYVMLSNIYAAAGKWKDVHRIRVLMKEQGVKKQTAYSWL 525
Query: 449 EVNGSYHKFLAGGIGH 464
++ H F+ G H
Sbjct: 526 QIGNKTHYFVGGDPSH 541
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 134/267 (50%), Gaps = 9/267 (3%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A K+F++M KD++ WNSML A+ G + + L MPL++V S+N +I+ +
Sbjct: 45 VDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPLRNVVSWNSIIAACVQN 104
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ A P K+ S+N++I G M+ A +F+ M NV+++ MV GY
Sbjct: 105 DNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYA 164
Query: 181 RSQLYI-EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
R + I LF+ M N ++ +++ G E + V N
Sbjct: 165 RVEGGIGRARALFEAMPRRN----SVSWVVMINGLVENGLCEEAWEVFVRMPQK----ND 216
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
A TA+I + K G +E + ++F + + +D+ WN ++ G A +G G AL L +M +
Sbjct: 217 VARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRT 276
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCE 326
++ DD+TF+ + AC+ ++EG +
Sbjct: 277 GMQPDDLTFVSVFIACASLASLEEGSK 303
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 123/250 (49%), Gaps = 18/250 (7%)
Query: 48 QTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL-----M 102
+TA++ + ++DA +F+++ +D+++WN ++ +A G+ + A+ L M
Sbjct: 219 RTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGM 278
Query: 103 PLKDVTSFNIMI-----SGYARIGKIHS--ARYIFDKVPAKDVVSWNSLILAYTNAGEME 155
D+T ++ I + K H+ ++ FD D+ N+LI ++ G +
Sbjct: 279 QPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFD----SDLSVCNALITVHSKCGGIV 334
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
+ +F ++ ++++WNT++ + + LY + FD+M +V+PD +T S+LSAC
Sbjct: 335 DSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACC 394
Query: 216 NLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCW 273
G + + DN G+ L+D+ ++ G ++++ ++ + K D W
Sbjct: 395 RAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIW 454
Query: 274 NAMILGLALH 283
A++ ++H
Sbjct: 455 GAVLAACSVH 464
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 11/177 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ D+ +F + A L+S G H IK GF + V AL+ ++
Sbjct: 273 MIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGG 332
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
I D+ VF ++ D+++WN+++ AFA G D A D M D +F ++S
Sbjct: 333 IVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSA 392
Query: 117 YARIGKIHSARYIFD------KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
R GK++ + +F +P + + L+ + AG++++A ++ +M K
Sbjct: 393 CCRAGKVNESMNLFSLMVDNYGIPPRS-EHYACLVDVMSRAGQLQRACKIINEMPFK 448
>gi|354805201|gb|AER41619.1| CRR4 [Oryza glumipatula]
Length = 745
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/495 (33%), Positives = 247/495 (49%), Gaps = 74/495 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY--------- 55
GV + ++F LL+A +L +HGQ ++ GF V+VQ AL+ +Y
Sbjct: 106 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALVDVYHRCGGGGGV 165
Query: 56 -GSLRCIDD------------------------AFKVFEKMPEKDIIAWNSMLDAFASCG 90
+ + D+ A FE MPE+++++WN+++ FA G
Sbjct: 166 GAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMG 225
Query: 91 QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN 150
M A + D MP ++ S+N+MISGYA G + +AR +FD++ KDVVSW +++ AY
Sbjct: 226 DMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAK 285
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTVTS 209
G+++ E+F M VKN+++WN M+TGY + Y E + F M G +PD T+ S
Sbjct: 286 IGDLDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVS 345
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
V+SACA LGS+E I + + + ALIDM+AKCG + ++ +FYK + +
Sbjct: 346 VVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRC 405
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ W MI G A + AL + M V+ DD FI L+AC+H GL+QEG +F+
Sbjct: 406 IITWTTMISGFA---FNRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFN 462
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M + + + ++EHYGCMVDLLGRA L++ + I + EP S L+S C L
Sbjct: 463 EMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL--EPFNSSYQVLVSNC---SAL 517
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E G+W+ R M + GI K GSS I+
Sbjct: 518 E-------------------------------GRWDGVIDARTSMRNWGIEKVPGSSSIQ 546
Query: 450 VNGSYHKFLAGGIGH 464
V H+FLA H
Sbjct: 547 VGSEVHEFLAKDTRH 561
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/506 (32%), Positives = 256/506 (50%), Gaps = 45/506 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M +L V D+ SF LKA + G ++ K GF + V+ L+ Y
Sbjct: 248 MFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGL 307
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS----------- 109
+ +A +VF++ +KD++ W +M+D +A+ + AM++ +LM L V
Sbjct: 308 LKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSA 367
Query: 110 ----------------------------FNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
N ++ Y + + AR +FD++ KDV SW
Sbjct: 368 CSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSW 427
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S++ Y G++E A F + KN + W+ M+ GY ++ E + LF EM V
Sbjct: 428 TSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVV 487
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT---ALIDMYAKCGSIEQS 258
P T+ SVLSAC L L G IH Y + P + T A++DMYAKCGSI+ +
Sbjct: 488 PIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKII--PLSVTLENAIVDMYAKCGSIDAA 545
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
EVF +++ WN MI G A +G A+ + +M + + ++ITF+ LL+ACSH
Sbjct: 546 TEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHG 605
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
GL+ EG E F ME+ +G+ + HY CMVDLLGR LL+ A +LI MP +P E+ GA
Sbjct: 606 GLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGA 665
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
LL+AC +H ++E+ R++ + + G ++ AN A+ +W + R R++M D G
Sbjct: 666 LLNACRMHGNVELA-RLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKG 724
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ K G S+IE++G + +FL H
Sbjct: 725 VKKIPGYSLIEIDGGFVEFLVADESH 750
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 153/346 (44%), Gaps = 43/346 (12%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMK----LIDLMPLKDVTSFNIMISGYAR 119
A +F ++ + + WN+M+ + + + A + L D SF + +
Sbjct: 210 AHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQ 269
Query: 120 IGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ ++ V +++ N LI Y G ++ A ++F + K+V+TW TM
Sbjct: 270 FETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTM 329
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ GY E +++F+ M +V+P+ +T+ +V+SAC+++G+LE G R+H + +
Sbjct: 330 IDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNM 389
Query: 236 ASNPHATTALIDM-------------------------------YAKCGSIEQSLEVFYK 264
+ AL+DM YAKCG +E + F +
Sbjct: 390 RCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQ 449
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ K+ CW+AMI G + + +LKL EM + V + T + +LSAC + G
Sbjct: 450 TPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLG 509
Query: 325 --CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ + K ++ LE+ +VD+ + +D A E+ MP
Sbjct: 510 DWIHQYFVVGKIIPLSVTLEN--AIVDMYAKCGSIDAATEVFSTMP 553
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 1/221 (0%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A ++G++ A +F ++ N WNTM+ GY ++ I F M V+ D +
Sbjct: 200 ALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRS 259
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
L AC ++ G ++ G LI YA+ G ++ + +VF +S
Sbjct: 260 FVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESS 319
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
KDV W MI G A H A+++ M S V+ +++T I ++SACS G ++ G
Sbjct: 320 DKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKR 379
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ ++E+ + L + ++D+ + L A EL + M
Sbjct: 380 VHEKVEEK-NMRCSLSLHNALLDMYVKCDCLVDARELFDRM 419
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/450 (34%), Positives = 251/450 (55%), Gaps = 56/450 (12%)
Query: 64 AFKVFEKMPEKDIIAWNSMLD----------------------------------AFASC 89
A K+F+++P+ D+ +N+M+ AF +C
Sbjct: 229 AHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGAC 288
Query: 90 GQ----------MDHAMKL-IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDV 138
G HA+K+ +D +V N +I + + G++ AR +FD +D
Sbjct: 289 GNGMCVREGEQVFTHAVKVGLD----GNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDF 344
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
SWN++I AY +G M A E+F +M ++V++W+T++ GY++ ++E +D F +M
Sbjct: 345 YSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQS 404
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
VKP+ T+ S L+AC+NL +L+ G IHVY + + N +LIDMYAKCG I+ +
Sbjct: 405 EVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSA 464
Query: 259 LEVFYKSQVK-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
VF++ +VK V+ WNAMI G A+HG A+ + +M V + +TFI LL+ACSH
Sbjct: 465 SSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSH 524
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+V+EG F M D+G+ ++EHYGCMVDLL R+ L + E+I +MP P +I G
Sbjct: 525 GYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWG 584
Query: 378 ALLSACVIHQDLEIGDRVAKMVCA-KSNYLSDGELMMFANLYASCGQWEEAN--RWRNMM 434
ALL+AC I++D+E G R+ +++ N++ G ++ N+Y++ G+W EA R +N +
Sbjct: 585 ALLNACRIYKDMERGYRIGRIIKEIDPNHI--GCNVLLGNIYSTSGRWNEARMVREKNEI 642
Query: 435 NDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N + K G S IE+NG +H+FL G H
Sbjct: 643 N-SDRKKIPGFSSIELNGVFHEFLVGDRSH 671
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 178/389 (45%), Gaps = 55/389 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCI--GLMLHGQTIKTGFCGHVYVQTALLKMYGSL 58
+++ G + YSF A G + C+ G + +K G G+V+V AL+ M+G
Sbjct: 269 IRDSGYFPNRYSFVFAFGACG--NGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKW 326
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
++DA VF+ ++D +WN+M+ A+ G M A +L D M +DV S++ +I+GY
Sbjct: 327 GRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYV 386
Query: 119 RIGKIHSARYIFDKV------P----------------------------AKDVVSWNSL 144
++G A F K+ P +D + N
Sbjct: 387 QVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDR 446
Query: 145 ILA-----YTNAGEMEKAGEMFKKMLVKN-VITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+LA Y GE++ A +F + VK V WN M+ G+ E +++F++MK
Sbjct: 447 LLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVE 506
Query: 199 NVKPDYLTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V P+ +T ++L+AC++ ++ G + + A+D G+ ++D+ ++ G ++
Sbjct: 507 KVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKD 566
Query: 258 SLE-VFYKSQVKDVFCWNAMILGLALHG---YGYAALKLLGEMNDSCVKADDITFIGLLS 313
S E + DV W A++ ++ GY +++ E++ + + + +G +
Sbjct: 567 SEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCN--VLLGNIY 624
Query: 314 ACS----HAGLVQEGCELFSRMEKDFGVT 338
+ S A +V+E E+ S +K G +
Sbjct: 625 STSGRWNEARMVREKNEINSDRKKIPGFS 653
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/472 (33%), Positives = 255/472 (54%), Gaps = 14/472 (2%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V DNYS + A L S +G LH ++K G +V +L+ MY S A
Sbjct: 89 VTLDNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATAR 148
Query: 66 KVFEKMPEK--DIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYA 118
+V + P+ D ++WN+++ + G + A++ M L DVT N +++ A
Sbjct: 149 QVLDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVAS-A 207
Query: 119 RIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
+ GK+ R V + +SLI Y G +E A ++F M +NV+ W +
Sbjct: 208 KAGKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTS 267
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M++GY + + E V+LF +M+ +K D T+ +V+S+CA +G+L+ G +H Y +G
Sbjct: 268 MISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHG 327
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L +LIDMY+KCG I ++ E+F +DVF W AMI+G ++G AL L
Sbjct: 328 LGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFA 387
Query: 295 EMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
+M + V +++TF+G+L++CSH GLV++G F RM + + ++EHYGCMVDLLGR
Sbjct: 388 QMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGR 447
Query: 354 ARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
A+LL A + I+ MP P + +LL AC ++ + + VA+ + G +++
Sbjct: 448 AKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLL 507
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
+N+YA+ +W + N R M+++ + K G S IEV+G H+F AG HL
Sbjct: 508 -SNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVDGCVHEFFAGDESHL 558
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+G V D ++ SA + L S+ GA++H + GL S+ +LI+MY+ C
Sbjct: 86 SGYVTLDNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPA 145
Query: 257 QSLEVFYKSQ--VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ +V + D WN +I G G AL+ G+M V DD+T + L A
Sbjct: 146 TARQVLDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVA 205
Query: 315 CSHAGLVQEG 324
+ AG V+ G
Sbjct: 206 SAKAGKVKVG 215
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 34/225 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D+ + ++ + + + +G +H G + V+ +L+ MY
Sbjct: 288 MQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGD 347
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A ++F + ++D+ +W +M+ F G A+ L M +
Sbjct: 348 INKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGE--------------- 392
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
GK+ + V++ ++ + ++ G +E+ F++M L + + M
Sbjct: 393 GKV-----------MPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCM 441
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
V R++L E M + PD + S+L AC G +
Sbjct: 442 VDLLGRAKLLTEAEQFIKNMP---IAPDVVVWRSLLFACRACGEV 483
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 210/337 (62%), Gaps = 2/337 (0%)
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD++P VVS +++ Y N G ++ A +F + K+ I WN M+ GY + E
Sbjct: 176 LFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEA 235
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS-NPHATTALID 247
+ LF M + +PD +TV VLSA A LG++E+G +H Y ++ N TAL+D
Sbjct: 236 LQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVD 295
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY KCGS+E ++ VF+ KD+ WNAMI G A+HG AL++ ++ D + DIT
Sbjct: 296 MYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDIT 355
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
FIGLL+ACSH+GLV+EG F ME ++G+ K+EHYGCMVDLLGRA L++ A L++++
Sbjct: 356 FIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSL 415
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P + +LL+AC +H+++ +G R+A + A + + G ++ +N+YA+ G+WEE
Sbjct: 416 TITPDAVMWVSLLAACRLHKNMALGQRIADFLVA-NGLANSGMYILLSNIYAAVGKWEEV 474
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R R+MM +GI K G S IE++ ++F+AG + H
Sbjct: 475 ARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSH 511
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 135/321 (42%), Gaps = 57/321 (17%)
Query: 16 LLKAAGILSSS---CIGL----MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
LL A LS+S C GL LH K G YV TALL MY A +F
Sbjct: 118 LLPTAHTLSASLPACRGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALF 177
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----------- 117
++MP+ +++ +ML +A+ G +D A +L D +P KD +N MI GY
Sbjct: 178 DEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQ 237
Query: 118 ------------------------ARIGKIHSARYIFDKVPAKDVVSWN-----SLILAY 148
A++G + S +++ V V N +L+ Y
Sbjct: 238 LFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMY 297
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G +E A +F + K+++ WN M+ GY + +++F +++ + P +T
Sbjct: 298 CKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFI 357
Query: 209 SVLSACANLGSLETGARI-----HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+L+AC++ G +E G H Y D + ++D+ + G IE++ +
Sbjct: 358 GLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEH----YGCMVDLLGRAGLIEEAFHLVQ 413
Query: 264 KSQV-KDVFCWNAMILGLALH 283
+ D W +++ LH
Sbjct: 414 SLTITPDAVMWVSLLAACRLH 434
>gi|326530660|dbj|BAK01128.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 613
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 232/400 (58%), Gaps = 4/400 (1%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +F++MP +D++++NSML A+ G MD A +L D MP +DV S+N M++G+ R
Sbjct: 183 LPSARHLFDQMPVRDLVSYNSMLSGHAAAGDMDGARQLFDGMPERDVVSWNSMLAGHTRC 242
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + AR +FD +P +DVVSWNS++ Y AG++ A +F M ++ ++WN ++ Y
Sbjct: 243 GDMEEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVVLALYA 302
Query: 181 RSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIH--VYATDNGLAS 237
R + + E + LFD M A G P+ T SVL+AC +LG LE G R+H V L
Sbjct: 303 RVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWETLVP 362
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ TAL+ MYAKCG +E + +F + V WN+MI+G LHG AL+L EM
Sbjct: 363 DVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELFLEME 422
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ + ++ TF+ +LS+C+H GLV EG F RM + +GV K EH+GCM+DLLGRA LL
Sbjct: 423 RTGPRPNETTFVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEPKAEHFGCMMDLLGRAGLL 482
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
+ L++ + + + ++ GA++SA +G+ V K + + G ++ +N+
Sbjct: 483 TDSDTLVQNLQEKASPALWGAMVSASRAQNGSRLGEFVGKKLI-EMRPKEVGPYVLLSNI 541
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
YA G+W + + R MM G K G S++ + H+
Sbjct: 542 YAGEGRWNDVEKVREMMKGNGAEKDVGLSLVGSSEPEHRI 581
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/504 (31%), Positives = 263/504 (52%), Gaps = 49/504 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI--- 61
G++ D+ FP +LK+ +L +G LHG I+ G +Y AL+ MY LR +
Sbjct: 101 GLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEES 160
Query: 62 -----------------------------DDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
D K+FE MPEKD+++WN+++ A G
Sbjct: 161 GRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLY 220
Query: 93 DHAMKLIDLMPLKDVTSFNIMISGY----------ARIGKIH--SARYIFDKVPAKDVVS 140
+ +++I M ++ + +S +R +IH S R D D+
Sbjct: 221 EETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDA----DIYV 276
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+SLI Y + + +F + ++ I+WN+++ G +++ L+ E + F +M +
Sbjct: 277 ASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKI 336
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KP + +S++ ACA+L +L G ++H Y T NG N ++L+DMYAKCG+I + +
Sbjct: 337 KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQ 396
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F + +++D+ W AMI+G ALHG A++L +M +K + + F+ +L+ACSH GL
Sbjct: 397 IFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGL 456
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V E + F+ M +DFG+ +EHY + DLLGRA L+ A + I M PT SI LL
Sbjct: 457 VDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLL 516
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC +H ++++ ++VA + + + + G ++ AN+Y++ +W+EA +WR M GI
Sbjct: 517 SACRVHXNIDMAEKVANRIL-EVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIR 575
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
KT S IEV + F+AG H
Sbjct: 576 KTPACSWIEVKNKVYAFMAGDESH 599
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 32/212 (15%)
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y++ + + +F + + W +++ Y L + + F M A + PD+
Sbjct: 50 YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS--------- 258
SVL +CA L L G +H Y GL + + AL++MY+K +E+S
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169
Query: 259 -----------------------LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
++F KD+ WN +I G A +G L+++ E
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIRE 229
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
M + +K D T +L + + G E+
Sbjct: 230 MGGANLKPDSFTLSSVLPLIAENVDISRGKEI 261
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/494 (32%), Positives = 262/494 (53%), Gaps = 48/494 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ DNY++P LLKA L + G +H IKTG +YVQ AL+ YGS+
Sbjct: 67 IKTCSTRPDNYTYPCLLKACSRLFTDSNGKQVHTHVIKTGLDSDIYVQNALVHFYGSVGN 126
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSF 110
DA +F++MP++D+ +WNS++ + + M L D + L V S
Sbjct: 127 STDACFLFDRMPDRDVASWNSLMGIYNTNNSFTEVMVLFKKLMCGCVKADKISLVIVLSA 186
Query: 111 -------------------------------NIMISGYARIGKIHSARYIFDK-VPAKDV 138
N +++ Y + +I A +FD+ V DV
Sbjct: 187 CAQAQMEGLEYGRSVHGYVIKVGFGCFLNVDNALLNFYIKCKEIDDASKMFDEFVHEGDV 246
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
VS+ LI AY G ++ A ++F +++ K+ + WN MV Y++++ E +DLF++M +
Sbjct: 247 VSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMDSA 306
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQ 257
V PD T+ SVL ACA++ L+ +H + N + + TALI MY+KCGS+E+
Sbjct: 307 GVIPDENTMVSVLLACASISDLQCARLLHRFINRNSNVRQDVFLKTALITMYSKCGSVEE 366
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+L FYK + DVF W AMI GLA +GYG AL + M + ++ ++ T + +L+AC H
Sbjct: 367 ALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRMENQGIRPNESTLVSVLTACIH 426
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+GLV+EGC+LF M D+ + K+EH+GC++DLL RA LL +A E I+ + P E ++
Sbjct: 427 SGLVKEGCQLFKSMVSDYKMQLKMEHFGCLIDLLSRAGLLHQAEEFIQLLL--PEERLIA 484
Query: 378 --ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
LLSAC+ + + + G +VA + S+ + +++ +N YA GQW + R +
Sbjct: 485 YKTLLSACMKYSEFDFGKKVANEMSKLSSNSHETRILL-SNFYALAGQWAQVAETRKFIK 543
Query: 436 DTGIVKTAGSSVIE 449
+ K G S ++
Sbjct: 544 EFDTRKAPGMSFVD 557
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 171 TWNTMVTGYLRSQLY----IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
TWN ++ Y RS I V + F +K + +PD T +L AC+ L + G ++
Sbjct: 41 TWNCLIRAYSRSPTAPIKAILVYNFF--IKTCSTRPDNYTYPCLLKACSRLFTDSNGKQV 98
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H + GL S+ + AL+ Y G+ + +F + +DV WN+++ +
Sbjct: 99 HTHVIKTGLDSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNTNNSF 158
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+ L ++ CVKAD I+ + +LSAC+ A + EG E
Sbjct: 159 TEVMVLFKKLMCGCVKADKISLVIVLSACAQAQM--EGLE 196
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/468 (35%), Positives = 252/468 (53%), Gaps = 70/468 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D ++P L+KA+ LS G+ +H Q IKTG
Sbjct: 105 MLRHGVAPDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGH------------------- 145
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
E D NS++ +ASCG NIM
Sbjct: 146 ------------ESDRFIQNSLIHMYASCG--------------------NIMW------ 167
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
A +F+ + K++VSWNS++ Y GEM A ++F+ M ++V +W++ + GY+
Sbjct: 168 -----AHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYV 222
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ Y E + +F++M+A K + +T+ SVLSACA+LG+L+ G +H Y DN L
Sbjct: 223 KAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMV 282
Query: 241 ATTALIDMYAKCGSIEQSLEVFY---KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
T+L+DMYAKCG+IE++L VF KSQ DVF WNAMI GLA HG +LKL EM
Sbjct: 283 LQTSLVDMYAKCGAIEEALFVFRGISKSQT-DVFIWNAMIGGLATHGLVEESLKLFKEMQ 341
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ +++D+IT++ LL+AC+H GLV+E F + K G+T EHY CMVD+L RA L
Sbjct: 342 MAGIRSDEITYLCLLAACAHGGLVKEAWNFFESLVKR-GMTPTSEHYACMVDVLARAGQL 400
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFAN 416
A + I +P EPT S+LGA+ S C+ H++ ++ + V K++ N +DG + +N
Sbjct: 401 TTAYQFICQIPIEPTASMLGAIFSGCINHRNFDLAETVGRKLIELDPN--NDGRYIGLSN 458
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+YA +W+++ R M G+ K+ G S +E++ +H+F+A H
Sbjct: 459 VYAVVKRWDDSKSMREAMERRGVKKSPGFSFVEISEIHHRFIAHDKTH 506
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 31/209 (14%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A +N+G+++ + +F ++ + +WN ++ GY S+ I + +F +M V PDYLT
Sbjct: 57 ALSNSGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLT 116
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
++ A A L ++G +H G S+ +LI MYA CG+I + +VF Q
Sbjct: 117 YPFLVKASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQ 176
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV------------------------- 301
K++ WN+M+ G A G A K+ M + V
Sbjct: 177 GKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEK 236
Query: 302 ------KADDITFIGLLSACSHAGLVQEG 324
KA+++T + +LSAC+H G +Q+G
Sbjct: 237 MRAVGPKANEVTMVSVLSACAHLGALQKG 265
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/502 (32%), Positives = 260/502 (51%), Gaps = 47/502 (9%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
++YSF L A L +G +HG K+ + V++ + L+ Y + A +VF
Sbjct: 155 NDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVF 214
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSF-------- 110
+ M EK++++WN ++ + G A++ D + L V S
Sbjct: 215 DGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFK 274
Query: 111 ----------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
N ++ YA+ G+++ AR +FD++P ++ VS +++ Y
Sbjct: 275 EGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGY 334
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
+ ++ A MF + K++++WN ++ GY ++ E + LF +K +V P + T
Sbjct: 335 AKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFG 394
Query: 209 SVLSACANLGSLETGARIHVYATDNGL----ASNPH--ATTALIDMYAKCGSIEQSLEVF 262
++L+A ANL LE G + H + +G P +LIDMY KCGS+E+ L VF
Sbjct: 395 NLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVF 454
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
KD WN MI+G A +GYG AL+L +M +S K D +T IG L ACSHAGLV+
Sbjct: 455 ENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVE 514
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
EG F M K+ G+ +HY CMVDLLGRA L+ A +LIE+MP +P + +LLSA
Sbjct: 515 EGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSA 574
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C +H+++ +G VA+ + + + S G ++ AN+Y+ G+W +A R +M G+VK
Sbjct: 575 CKVHRNITLGKYVAEKI-FEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQ 633
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
G S I++ + H F+ H
Sbjct: 634 PGCSWIDIQSNVHVFMVKDKRH 655
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 129/473 (27%), Positives = 201/473 (42%), Gaps = 84/473 (17%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ F LL L SS +HG+ I+T FC V++Q L+ +YG +D A KVF
Sbjct: 23 DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++M E+++ ++NS++ G +D + L LMP KD S+N MI+G+A+ + A
Sbjct: 83 DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142
Query: 129 IFDKVPAKDVV----SWNS-----------------------------------LILAYT 149
F ++ D V S+ S LI Y+
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G + A +F M KNV++WN ++T Y ++ IE ++ F M KPD +T+ S
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHAT-TALIDMYAKCGSIEQSLEVFYKSQVK 268
V+SACA L + + G +IH + N AL+DMYAKCG + ++ VF + V+
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+ M+ G A A++K M + + D +++ L++ + G +E LF
Sbjct: 323 NAVSETTMVSGYA----KSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLF 378
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQD 388
RM K V PT G LL+A D
Sbjct: 379 -RMLKRESVC--------------------------------PTHYTFGNLLNASANLAD 405
Query: 389 LEIGDRVAKMVCAKSNYLSDGELM------MFANLYASCGQWEEANR-WRNMM 434
LE+G + V GE ++Y CG EE R + NM+
Sbjct: 406 LELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMV 458
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/356 (40%), Positives = 221/356 (62%), Gaps = 4/356 (1%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y + SAR +FD + +D+ SW +L+ Y N+ ++ A ++F +M ++VI
Sbjct: 127 NSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSVI 186
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+++ M+ Y+R + E +DLF E+ + ++P V SVL ACANLG+L+ G ++ Y
Sbjct: 187 SYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSYV 246
Query: 231 TDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ G + TALIDM+ KCGSIE +L VF ++ K V W AM+ GLA+HG G
Sbjct: 247 CQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQL 306
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
++ +M DS VK + +TF+ LLS CSH+GLV EG F RME DFGV +EH+GC+VD
Sbjct: 307 IEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVD 366
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA L+D+A++LI MPFEP +I G+LL+AC +++++EIG+ A+ + + +G
Sbjct: 367 LLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGELAAQWLIKDEPW--NG 424
Query: 410 EL-MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
L M +LY G+W+E + + M + G K G S+IEV G ++F+ G H
Sbjct: 425 ALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGICYEFVVGDKSH 480
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 141/302 (46%), Gaps = 41/302 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G D Y+FP LLKA L+ G LH Q +K G GHV+V+ +L+ +YGS
Sbjct: 79 MLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLGGHVFVENSLIHLYGSNSG 138
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A +VF+ M +DI +W ++L +A+ + A K+ D MP + V S++ MI+ Y R
Sbjct: 139 MDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRG 198
Query: 121 GKIHSARYIFDKV------P----------------AKDVVSW----------------- 141
+ A +F ++ P A DV W
Sbjct: 199 NRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRI 258
Query: 142 -NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+LI + G +E A +F+ K+V W M++G L ++++ F++M V
Sbjct: 259 ATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGV 318
Query: 201 KPDYLTVTSVLSACANLGSLETGA-RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
KP+ +T ++LS C++ G + G +D G+ ++D+ + G I+Q++
Sbjct: 319 KPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAM 378
Query: 260 EV 261
++
Sbjct: 379 QL 380
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 40/289 (13%)
Query: 142 NSLILAYTNAGE--MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
LI YT++ + A +F + + +NTM Y S + + L M
Sbjct: 24 RKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMFRVYAASPTPLHALLLHRHMLRHG 83
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
PD T +L AC+ L L G +H A GL + +LI +Y ++ +
Sbjct: 84 PPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLGGHVFVENSLIHLYGSNSGMDSAR 143
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
VF +D+ W ++ A AA K+ EM + V I++ +++A
Sbjct: 144 RVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSV----ISYSAMIAAYVRGN 199
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
+E +LF + F V EP++S + ++
Sbjct: 200 RFREALDLFREL---FSVK------------------------------IEPSDSCVMSV 226
Query: 380 LSACVIHQDLEIGDRVAKMVC-AKSNYLSDGELMMFANLYASCGQWEEA 427
L AC L++G V VC +K +Y+ +++ CG E A
Sbjct: 227 LCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHA 275
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 47 VQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG---QMDHAM-KLIDLM 102
+ TAL+ M+ I+ A VFE EK + W +ML A G Q+ A K++D
Sbjct: 258 IATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSG 317
Query: 103 PLKDVTSFNIMISGYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKA 157
+ +F ++SG + G ++ Y FD++ + V + ++ AG +++A
Sbjct: 318 VKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQA 377
Query: 158 GEMFKKMLVK-NVITWNTMVTG 178
++ +M + N W +++
Sbjct: 378 MQLISEMPFEPNAAIWGSLLNA 399
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 209/351 (59%), Gaps = 2/351 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y R G + AR +FD + KD VSWN+LI A+ G+M KA E+F M K V+
Sbjct: 156 NSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVV 215
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +V+GY + V++F +M+ +PD +++ +VL ACA LG+LE G I+ Y
Sbjct: 216 SWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYC 275
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G+ + AL++MYAKCG IE++L++F+ KDV W+ I GLA HG A+
Sbjct: 276 NKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAV 335
Query: 291 KLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
KL M+ + V + ITF+GLLSACSHAGL+ EG F RM++++GV +EHYGC+VD
Sbjct: 336 KLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVD 395
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGR+ + RA++ I MP P I G+LLSAC H D++ VA + G
Sbjct: 396 LLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTA-VVAAERLVELEPEDVG 454
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
L+M AN+YA+ G+W R + KT G S+IEV+ +F+AG
Sbjct: 455 NLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAG 505
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 142/295 (48%), Gaps = 41/295 (13%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D +++P LLKA G L++S +G +H ++G H VQ +L++MY + A KVF
Sbjct: 116 DRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVF 175
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ M EKD ++WN+++ A A GQM A +L MP K V S+ ++SGY +G A
Sbjct: 176 DGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVE 235
Query: 129 IFDKVP----------------------AKDVVSW-----------------NSLILAYT 149
+F ++ A ++ W N+L+ Y
Sbjct: 236 VFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYA 295
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVT 208
G +E+A ++F M K+VI+W+T + G E V LF+ M + G V P+ +T
Sbjct: 296 KCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFV 355
Query: 209 SVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+LSAC++ G L+ G R + G+ + ++D+ + G I+++L+
Sbjct: 356 GLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTI 410
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 52/301 (17%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM---------KAGNVKP 202
G A +F + N+ N M+ Y ++ L+ + V+++ M G
Sbjct: 56 GRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVG 115
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D T +L AC L + + G ++H + +G S+ +LI+MY +CG + + +VF
Sbjct: 116 DRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVF 175
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ KD WN +I A G A +L M D V +++ L+S + G
Sbjct: 176 DGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTV----VSWTALVSGYTAVGDFA 231
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
E+F +M+ + FEP + + A+L A
Sbjct: 232 GAVEVFRQMQME---------------------------------GFEPDDVSIVAVLPA 258
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMM---FANLYASCGQWEEANRWRNMMNDTGI 439
C LE+G R C K L G++ + +YA CG EEA + + M++ +
Sbjct: 259 CAQLGALELG-RWIYAYCNKHGML--GKIYICNALMEMYAKCGCIEEALQLFHGMSEKDV 315
Query: 440 V 440
+
Sbjct: 316 I 316
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 34/227 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D+ S +L A L + +G ++ K G G +Y+ AL++MY C
Sbjct: 240 MQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGC 299
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I++A ++F M EKD+I+W++ + A+ G+ A+KL ++M + +M +G +
Sbjct: 300 IEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREG----RVMPNGITFV 355
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
G L+ A ++AG +++ F +M + +V + +
Sbjct: 356 G----------------------LLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCV 393
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
V RS +D M + PD S+LSAC + ++T
Sbjct: 394 VDLLGRSGRIQRALDTIGGMP---IPPDGKIWGSLLSACRSHSDVDT 437
>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
Length = 701
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 238/437 (54%), Gaps = 42/437 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V +L Y L +++A K+F++MP K+ I+W +++ A G++ A L+D M
Sbjct: 266 NVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMS 325
Query: 104 LK-------------------------------DVTSFNIMISGYARIGKIHSARYIFDK 132
D +N MISGY + G + A +F +
Sbjct: 326 FNCVAAKTALMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQR 385
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P KD VSWN++I Y G+M KA +F++M KN ++WN++++G++++ L+++ F
Sbjct: 386 MPNKDTVSWNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHF 445
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
M+ G + D+ T S L ACANL +L G ++H +G ++ A ALI YAKC
Sbjct: 446 MLMRRGTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKC 505
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G + ++ ++F + KD+ WNA++ G A +G G A+ + EM + V+ D++TF+G+L
Sbjct: 506 GRMLEAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGIL 565
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
SACS AGL+ EG F+ M +++ + EHY CM DLLGRA L+ A EL++ M +P
Sbjct: 566 SACSRAGLIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPN 625
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEA 427
+ GALL AC ++++ E+ A+ + C SNY+ + +N+ A G+W+EA
Sbjct: 626 AGVWGALLGACQMYKNHELARLAAEKLSELEPCRASNYV------LLSNISAEAGKWDEA 679
Query: 428 NRWRNMMNDTGIVKTAG 444
+ R + + G K G
Sbjct: 680 EKARASIKEKGANKPPG 696
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 182/391 (46%), Gaps = 34/391 (8%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
A++ Y DDA K+ +MP D+ +WNS L GQM A++ D M KD+
Sbjct: 147 NAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMV 206
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N+M+ G+ R G + +A F ++ + +VVSW +L+ Y AG + A ++F +M +N
Sbjct: 207 SWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERN 266
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+ N M+ GY+R E LFDEM N ++ T+++S A G L+ +
Sbjct: 267 VVACNVMLDGYVRLSRLEEACKLFDEMPGKN----SISWTTIISGLARAGKLQEAKDLLD 322
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ N +A A TAL+ Y + + + ++F +V D CWN MI G G
Sbjct: 323 KMSFNCVA----AKTALMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEE 378
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT-----RKLEH 343
A+ L M + D +++ +++ + G +++ +F RM + V+
Sbjct: 379 AMLLFQRMPNK----DTVSWNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQ 434
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
G VD L+ R + S + L AC L +G ++ ++ +S
Sbjct: 435 NGLFVDAFHHFMLMRRGTNRADW-------STYASCLRACANLAALHVGRQLHSLLV-RS 486
Query: 404 NYLSDGELMMFA-----NLYASCGQWEEANR 429
+++D +FA + YA CG+ EA +
Sbjct: 487 GHIND----LFARNALISTYAKCGRMLEAKQ 513
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 160/346 (46%), Gaps = 49/346 (14%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID+A +F+ MP ++ ++WN+M+ A + G++ A L D MP +D S+ +M+S YAR
Sbjct: 65 IDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARA 124
Query: 121 GKIHSARYIFDK--------------------------------VPAKDVVSWNSLILAY 148
G++ AR + D+ +PA D+ SWNS +
Sbjct: 125 GELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGL 184
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
T +G+M +A + F +M+ K++++WN M+ G++R+ F +++ P+ ++
Sbjct: 185 TQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIES----PNVVSWV 240
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
++L+ G + + D N A ++D Y + +E++ ++F + K
Sbjct: 241 TLLNGYCRAGRISDARDLF----DRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGK 296
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+ W +I GLA G A LL +M+ +CV A G L +V + ++F
Sbjct: 297 NSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYL----QRNMVNDARQIF 352
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
ME V + M+ + +L+ A+ L + MP + T S
Sbjct: 353 DGMEVHDTVC-----WNTMISGYVQRGMLEEAMLLFQRMPNKDTVS 393
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 146/307 (47%), Gaps = 18/307 (5%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A ++F+ MP ++ + +NSML A A G++D A L D MP ++ S+N MI+ + G++
Sbjct: 37 ARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRV 96
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML-VKNVITWNTMVTGYLRS 182
AR +FD++P++D SW ++ Y AGE+E A ++ +M K +N M++GY ++
Sbjct: 97 ADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRMPGDKCTACYNAMISGYAKN 156
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
+ + V L EM A PD + S L+ G + + + + S
Sbjct: 157 GRFDDAVKLLREMPA----PDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMVS----W 208
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
+++ + + G ++ + F + + +V W ++ G G A L M + V
Sbjct: 209 NLMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVV 268
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
A ++ G + ++E C+LF M ++ + ++ L RA L A +
Sbjct: 269 ACNVMLDGYV----RLSRLEEACKLFDEMPGKNSIS-----WTTIISGLARAGKLQEAKD 319
Query: 363 LIEAMPF 369
L++ M F
Sbjct: 320 LLDKMSF 326
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 159/361 (44%), Gaps = 37/361 (10%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N L A GQ+ A +L D MP ++ ++N M+S AR G+I AR +FD +P+++ V
Sbjct: 22 NQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNAV 81
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
SWN++I A ++ G + A +F +M ++ +W MV+ Y R+ D+ D M
Sbjct: 82 SWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRMPGDK 141
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
Y +++S A G + ++ L S A L + G + +++
Sbjct: 142 CTACY---NAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLT----QSGQMVRAV 194
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+ F + KD+ WN M+ G G AA G + V ++++ LL+ AG
Sbjct: 195 QFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNV----VSWVTLLNGYCRAG 250
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT---ESIL 376
+ + +LF RM + R + M+D R L+ A +L + MP + + +I+
Sbjct: 251 RISDARDLFDRMPE-----RNVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSISWTTII 305
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
L A + + ++ D+++ A L G L RNM+ND
Sbjct: 306 SGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQ------------------RNMVND 347
Query: 437 T 437
Sbjct: 348 A 348
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
AD ++ L+A L++ +G LH +++G ++ + AL+ Y + +A +
Sbjct: 454 RADWSTYASCLRACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEAKQ 513
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGK 122
+F++M KDI++WN+++D +AS GQ A+ + M D +F ++S +R G
Sbjct: 514 IFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAGL 573
Query: 123 IHSARYIFDKV-------PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
I F+ + P + + + +L AG++ +A E+ + M ++ N W
Sbjct: 574 IDEGLGFFNSMTEEYSLKPVAEHYACMADLLG--RAGKLNEAFELVQGMQIQPNAGVWGA 631
Query: 175 MV 176
++
Sbjct: 632 LL 633
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/430 (36%), Positives = 245/430 (56%), Gaps = 21/430 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
HG I+ + VQ ALL MY + A K F ++ E++ AWN M+ + G
Sbjct: 690 FHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGL 749
Query: 92 MDHAMKLIDLMPLKDVTSFNI---------MISGYARIGKIHSAR----YIFDKVPAKDV 138
+ MK I L +++ I ++S +++G H AR Y+ + ++V
Sbjct: 750 I---MKCIGL--FREMQCLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDENV 804
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y +G + A +F + + ++++TWNT+++ Y + E + L+D+M
Sbjct: 805 SVNNSLIDMYGKSGNLTIARRIFCR-IPRDIVTWNTLISSYAHCGHFAEALSLYDKMVLE 863
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
++KP+ T+ VLSAC++L SLE G ++H Y N TALIDMYAKCG +E+S
Sbjct: 864 DLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKS 923
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
E+F +DV WN MI G +HG +A++ +M +S K + +TF+ +LSAC+HA
Sbjct: 924 REIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAVLSACAHA 983
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
GLV+EG LF +M+ D+ V L+HY CMVDLLGR+ L A L+ +MP P + GA
Sbjct: 984 GLVKEGKYLFGKMQ-DYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGA 1042
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
LLS+C IH ++E+G R+AK S+ +DG +M +N+Y+S G+WEEA + R +M + G
Sbjct: 1043 LLSSCKIHNEIEMGIRIAKHAIX-SDVENDGYYVMISNMYSSIGKWEEAEKARGIMKERG 1101
Query: 439 IVKTAGSSVI 448
+ K G S +
Sbjct: 1102 VRKKTGWSAV 1111
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 186/385 (48%), Gaps = 27/385 (7%)
Query: 1 MQELGVHADNYSFPLL---LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS 57
M +G + +F L +A G L + G LHG +KTG VQ++LL MY
Sbjct: 555 MHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSK 614
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFA------SCGQMDHAMKLIDLMPLKDVTSFN 111
++A + F ++ KDII+W SM+ A++ C M M + + P D +
Sbjct: 615 CGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYP--DGIVIS 672
Query: 112 IMISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
M+S ++ ++ A+ I + D + N+L+ Y G ++ A + F ++ +
Sbjct: 673 CMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQ 732
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
N WN MV+GY + L ++ + LF EM+ ++ D ++ SV+S+C+ LG+ IH
Sbjct: 733 NFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLARSIH 792
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
Y N + N +LIDMY K G++ + +F + +D+ WN +I A G+
Sbjct: 793 CYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFA 851
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS-----RMEKDFGVTRKLE 342
AL L +M +K + T + +LSACSH ++EG ++ + + E + + L
Sbjct: 852 EALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATAL- 910
Query: 343 HYGCMVDLLGRARLLDRAIELIEAM 367
+D+ + L+++ E+ +M
Sbjct: 911 -----IDMYAKCGQLEKSREIFNSM 930
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 137/343 (39%), Gaps = 56/343 (16%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+SL+ Y+ G E+A F ++L K++I+W +M++ Y R E +D+F EM +
Sbjct: 606 SSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIY 665
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD + ++ +LS+ +N + H + AL+ MY K G ++ + +
Sbjct: 666 PDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKF 725
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + ++ WN M+ G G + L EM C+ I +
Sbjct: 726 FGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQ--CL---GIESDSNSLVSVVSSCS 780
Query: 322 QEGCELFSR----------MEKDFGVTRKL-EHYGCMVDLLGRARLLDR----------- 359
Q G +R M+++ V L + YG +L R+ R
Sbjct: 781 QLGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIPRDIVTWNTL 840
Query: 360 ------------AIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
A+ L + M E P + L +LSAC LE G++V N
Sbjct: 841 ISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKV-------HN 893
Query: 405 YLSDGEL-------MMFANLYASCGQWEEANRWRNMMNDTGIV 440
Y++ G+ ++YA CGQ E++ N M++ ++
Sbjct: 894 YINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVI 936
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 2/159 (1%)
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
++NV W + G S++ +E + + +P++ T+ AC NLG+L G
Sbjct: 531 IRNVEFWRRHMNG--ESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRC 588
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H G+ + ++L+ MY+KCG+ E++ F + KD+ W +MI + G+
Sbjct: 589 LHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGW 648
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ + EM S + D I +LS+ S++ V E
Sbjct: 649 ATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEA 687
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 21/226 (9%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPE----KDIIAWNSMLDAFASCGQMD--HAM--KLID 100
++L +Y +D A +M + K IA++S++ + D H + KL
Sbjct: 265 SSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKKLKS 324
Query: 101 LMPLKDVTSFNIMISGYARIGKIHSARYIFDK----VPAKDVVSWNSLILAYTNAGEMEK 156
+ + + MIS ++G+ A ++ + P D N L+ AY N EME
Sbjct: 325 IFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKNEMEM 384
Query: 157 AGEMFKKMLVKNVI----TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK---PDYLTVTS 209
A + + +M+ + + TW + GYL+ + +V+D F E G+VK PD V
Sbjct: 385 AEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYF-EKAVGSVKKWNPDEKLVRE 443
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
V G++E ++ V G S L+ YAK G +
Sbjct: 444 VYKNLEEQGNIEGAEKVLVILRKAGHVST-EIYNWLLRAYAKAGKM 488
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 35/247 (14%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L A L+S G +H F ++ + TAL+ MY ++ + ++F M E+D
Sbjct: 875 VLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERD 934
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARIGKIHSARYIFD 131
+I WN M+ + G A++ M +F ++S A G + +Y+F
Sbjct: 935 VITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLF- 993
Query: 132 KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
G+M + N+ + MV RS E L
Sbjct: 994 --------------------------GKMQDYSVAPNLKHYACMVDLLGRSGNLQEAEAL 1027
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
M + PD ++LS+C +E G RI +A + + ++ + + +MY+
Sbjct: 1028 VLSMP---ISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIXSDVENDGYYVM-ISNMYSS 1083
Query: 252 CGSIEQS 258
G E++
Sbjct: 1084 IGKWEEA 1090
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 85/190 (44%), Gaps = 12/190 (6%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLK-DVT----SFNIMISGYARIGKIHSARYIFDKV- 133
N ++ + HA+++ + M + D+ + + + A+I + SA F+ +
Sbjct: 92 NRIVRELRKLKRYKHALEICEWMTKQHDIKLLAGDYAVHLDLIAKIRGLASAEKFFEDLS 151
Query: 134 -PAKDVVSWNSLILAYTNAGEMEKAGEMFKKM----LVKNVITWNTMVTGYLRSQLYIEV 188
K + +L+ Y EKA + +KM +K + +N M++ Y+ +V
Sbjct: 152 DKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLKCPLPYNHMISLYISDGQLEKV 211
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ E+K N PD +T L+ CA+ +ET ++ + + + ++L ++
Sbjct: 212 PGMIQELKK-NTSPDVVTYNLWLTVCASQNDVETAEKVLLEIKKAKIDPDWVTYSSLTNL 270
Query: 249 YAKCGSIEQS 258
Y K G ++++
Sbjct: 271 YIKKGLLDKA 280
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 255/473 (53%), Gaps = 41/473 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRC-IDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
+H IKTG H + +L S I+ A+ +F +P ++ WN+++ F+
Sbjct: 44 IHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSRSS 103
Query: 91 QMDHAMKLI------DLMPL---------------------------------KDVTSFN 111
A+ L ++P KD N
Sbjct: 104 TPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQN 163
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+I YA G + AR +FD++ DVV+ NS+I+ GE++K+ +F M + +T
Sbjct: 164 TIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVT 223
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN+M++GY+R++ +E ++LF +M+ V+P T+ S+LSACA+LG+L+ G +H Y
Sbjct: 224 WNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVK 283
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N TA+IDMY KCG I +++EVF S + + CWN++I+GLAL+GY A++
Sbjct: 284 RGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIE 343
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
++ S +K D ++FIG+L+AC + G V + + FS M + + ++HY CMV++L
Sbjct: 344 YFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVL 403
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
G+A LL+ A +LI+ MP + I G+LLS+C H ++EI R A+ VC + + G L
Sbjct: 404 GQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGYL 463
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+M +N+ A+ Q+EEA R +M + K G S IE+ G H+FLAGG H
Sbjct: 464 LM-SNVQAASNQFEEAMEQRILMRERLAEKEPGCSSIELYGEVHEFLAGGRLH 515
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 187/402 (46%), Gaps = 56/402 (13%)
Query: 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM 71
++P + KA L + G LHG+ +K G ++Q ++ MY + + +A +VF+++
Sbjct: 126 TYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDEL 185
Query: 72 PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD 131
+ D++A NSM+ A CG++D + +L D MP + ++N MISGY R ++ A +F
Sbjct: 186 VDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFR 245
Query: 132 KV------PAK---------------------------------DVVSWNSLILAYTNAG 152
K+ P++ +V+ ++I Y G
Sbjct: 246 KMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCG 305
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+ KA E+F+ + + WN+++ G + + ++ F +++A ++KPD+++ VL+
Sbjct: 306 VIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLT 365
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVFYKSQVK-D 269
AC +G++ AR + N P T ++++ + +E++ ++ +K D
Sbjct: 366 ACKYIGAV-GKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKAD 424
Query: 270 VFCWNAMILGLALHG---YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
W +++ HG A + + E+N S D ++ + + + + +E E
Sbjct: 425 FIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPS----DASGYLLMSNVQAASNQFEEAME 480
Query: 327 ----LFSRM-EKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+ R+ EK+ G + +E YG + + L RL +A E+
Sbjct: 481 QRILMRERLAEKEPGCS-SIELYGEVHEFLAGGRLHPKAREI 521
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 118/280 (42%), Gaps = 33/280 (11%)
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ KIH A I + V + L +++G++ A +F + N+ WNT++ G+
Sbjct: 41 LQKIH-AHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGF 99
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
RS + LF +M +V P LT SV A A LG+ GA++H GL +
Sbjct: 100 SRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQ 159
Query: 240 HATTALIDMY-------------------------------AKCGSIEQSLEVFYKSQVK 268
+I MY AKCG +++S +F +
Sbjct: 160 FIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTR 219
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
WN+MI G + AL+L +M V+ + T + LLSAC+H G ++ G E
Sbjct: 220 TRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHG-EWV 278
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
K + ++D+ + ++ +AIE+ EA P
Sbjct: 279 HDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASP 318
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 14/189 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V ++ LL A L + G +H + F +V V TA++ MY
Sbjct: 247 MQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGV 306
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI------DLMPLKDVTSFNIMI 114
I A +VFE P + + WNS++ A G A++ DL P D SF ++
Sbjct: 307 IVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKP--DHVSFIGVL 364
Query: 115 SGYARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
+ IG + AR F + K + + ++ A +E+A ++ K M +K +
Sbjct: 365 TACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKAD 424
Query: 169 VITWNTMVT 177
I W ++++
Sbjct: 425 FIIWGSLLS 433
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 259/464 (55%), Gaps = 17/464 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ G+ D Y+ ++KA G+ G +HGQ K GF V +QTALL +YG
Sbjct: 70 VRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYGLFDE 129
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFA--SCG----QMDHAMKLIDLMPLKDVTSFNIMI 114
++F++MP++D++ WN+++ A+A +C ++ + M ++ P VT+ +I+
Sbjct: 130 DCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKP-NGVTAVSILS 188
Query: 115 SGYA----RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ R GK +H Y+ + DV N+LI+ Y+ G + A ++F+ M ++NV
Sbjct: 189 VCSSLRALREGKAVHG--YVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNV 246
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++W +++ GY + E + F +M+A N++PD +TV V+ C+ L S E G I Y
Sbjct: 247 VSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQY 306
Query: 230 ATDNGL-ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
GL +P AL+DM+AKCG+I ++ ++F + K + W MI GLA+HG+G +
Sbjct: 307 VVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLS 366
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL +M K D + F+ LLSACSHAGLV EG FS ME D+ ++ +EHYGCMV
Sbjct: 367 ALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWMEHYGCMV 426
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
D+L RA L+D A + ++ MP +P + LL AC ++ + ++V +C S+
Sbjct: 427 DILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACHTQGNISLANQVMNYLCELGPKKSE 486
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKT-AGSSVIEVN 451
+ ++ +NL+AS +W+ R M D G+ K G S IE +
Sbjct: 487 -DYVLLSNLFASNAEWDNVGEVRKEMGDRGVTKQDPGCSFIEAD 529
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 13/238 (5%)
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
+K VVS+ S+ L G A + ++ + TWNT++ GYL E + +++
Sbjct: 14 SKLVVSFASITLP----GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILVYNH 69
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA---- 250
++ +K D T+ V+ AC + G +IH G TAL+++Y
Sbjct: 70 VRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYGLFDE 129
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
CG ++Q +F + +D+ WNA+I A Y ++ +M S VK + +T +
Sbjct: 130 DCG-LQQ---IFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVS 185
Query: 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+LS CS ++EG + + K+ H +V + + + A+++ + MP
Sbjct: 186 ILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIV-VYSKCGSIRDAVQVFQLMP 242
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/472 (33%), Positives = 256/472 (54%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ + ++ LKA ++ +G LH IK ++ L+ MY
Sbjct: 203 MNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNS 262
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+DDA VF+ MPE+D+IAWN+++ + + + A L LM + + +S +
Sbjct: 263 MDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKS 322
Query: 121 GKIHSARYIFDKVPAKDVVSW--------NSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A Y+ ++ A + S NSLI Y G +E A +F++ + +++ +
Sbjct: 323 IAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLF 382
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++VT Y + E + L+ EM+ +KPD +S+L+ACA+L + E G ++HV+
Sbjct: 383 TSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK 442
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G S+ A +L++MYAKCGSIE + F + V+ + W+AMI GLA HGYG AL+L
Sbjct: 443 FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQL 502
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M V + IT + +L AC+HAGLV E F+ M+ FG+ EHY CM+DLLG
Sbjct: 503 FKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLG 562
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L+ A+EL+ MPF+ + GALL A IH+++++G++ A+M+ A S G +
Sbjct: 563 RAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKS-GTHV 621
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ AN+YAS G W++ R R +M D + K G S +EV + F+ G H
Sbjct: 622 LLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSH 673
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/489 (23%), Positives = 212/489 (43%), Gaps = 57/489 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ + ++FP +LKA + +G +HG + TGF +V +L+ +Y
Sbjct: 1 MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
DA +F+ +P++ +++WN++ + A+ L M L + +S +
Sbjct: 61 FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120
Query: 121 ----------GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
KIH Y+ D S N+L+ Y G +E A +F ++ +++
Sbjct: 121 CTGLEDSVQGRKIHG--YLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIV 178
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN ++ G + + + ++L EM + P+ T++S L ACA + E G ++H
Sbjct: 179 SWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL 238
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ S+ LIDMY+KC S++ + VF +D+ WNA+I G + + A
Sbjct: 239 IKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAA 298
Query: 291 KLLGEMNDSCVKADDITFIGLLSACS-----------HAGLVQEGCE----LFSRMEKDF 335
L M+ + + T +L + + HA ++ G E + + + +
Sbjct: 299 SLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTY 358
Query: 336 G-------VTRKLEHYGCMVDLLGRARLL---------DRAIELIEAMP---FEPTESIL 376
G TR E +VDL+ L+ + A+ L M +P +
Sbjct: 359 GKCGHVEDATRVFEE-SPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVC 417
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA-----NLYASCGQWEEANRWR 431
+LL+AC E G +V + K ++SD +FA N+YA CG E+A+
Sbjct: 418 SSLLNACASLSAYEQGKQVHVHIL-KFGFMSD----IFAGNSLVNMYAKCGSIEDASCAF 472
Query: 432 NMMNDTGIV 440
+ + GIV
Sbjct: 473 SRIPVRGIV 481
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/491 (32%), Positives = 255/491 (51%), Gaps = 41/491 (8%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
PL+LK+ ++SC G H + G G V+VQTAL+ Y +D A F++MP
Sbjct: 177 IPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMP 236
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
KD I N ++ ++ G ++ A +L D MP + S+N MI+ YA G+ A +FD+
Sbjct: 237 VKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQ 296
Query: 133 V------PA--------------------------------KDVVSWNSLILAYTNAGEM 154
+ P ++V+ +L+ Y +
Sbjct: 297 MLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAI 356
Query: 155 EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
++A F +M ++V+ W+TM+ GY ++ E ++LF+ MKA N KP+ +T+ VLSAC
Sbjct: 357 DEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 416
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
A LGS E G +I Y L + +ALIDMY KCG + ++ VF + + K V WN
Sbjct: 417 AQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWN 476
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+MI GLAL+G+ A+ L +M ++ +++TF+ LL+AC+HAGLV +G F M+K
Sbjct: 477 SMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKK 536
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
V+ ++EH C+VDLL ++ L A + I M EP I LLSAC H D+E+
Sbjct: 537 QHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKL 596
Query: 395 VA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGS 453
A K+V + N + ++ +N+YA G W + R++M + K + S IE++G
Sbjct: 597 AAGKLVALEPN--NSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGE 654
Query: 454 YHKFLAGGIGH 464
H+FL H
Sbjct: 655 VHRFLVQDTYH 665
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 159/477 (33%), Positives = 257/477 (53%), Gaps = 17/477 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ D ++ +L + L + G +H TIK YV +L+ MY C
Sbjct: 341 MPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDC 400
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCG---------QMDHAMKLIDLMPLKDVTSFN 111
+ +A KVF+ D++ +N+M++ ++ G + H M+ + P + +F
Sbjct: 401 LTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRP--SLLTFV 458
Query: 112 IMISGYARIGKIHSARYI----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
++ A + + ++ I F D+ + ++LI Y+N ++ + +F +M VK
Sbjct: 459 SLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVK 518
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+++ WN+M +GY++ E ++LF E++ +PD T +++A NL SL+ G H
Sbjct: 519 DLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFH 578
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
GL NP+ T AL+DMYAKCGS E + + F + +DV CWN++I A HG G
Sbjct: 579 CQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGR 638
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL++L +M ++ + ITF+G+LSACSHAGLV++G + F M + FG+ + EHY CM
Sbjct: 639 KALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCM 697
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
V LLGRA L+ A ELIE MP +P + +LLS C ++E+ + A+M S+
Sbjct: 698 VSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAIL-SDPKD 756
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G + +N+YAS G W +A + R M G+VK G S IE+N H FL+ H
Sbjct: 757 SGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHIFLSKDKSH 813
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 152/300 (50%), Gaps = 15/300 (5%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +K+ F VYV T L+ Y ID A VF+ +PEK + W +M+
Sbjct: 168 FQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKM 227
Query: 90 GQMDHAMKLI------DLMP----LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
G+ +++L +++P L V S ++ +IH+ +I KD
Sbjct: 228 GRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHA--HILRYGHEKDAS 285
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
N LI +Y G + A ++F M KN+I+W T+++GY ++ L+ E ++LF M
Sbjct: 286 LMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFG 345
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+KPD +S+L++CA+L +LE G ++H Y L ++ + T +LIDMYAKC + ++
Sbjct: 346 LKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEAR 405
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYA---ALKLLGEMNDSCVKADDITFIGLLSACS 316
+VF DV +NAMI G + G + AL + +M ++ +TF+ LL A +
Sbjct: 406 KVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASA 465
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 159/347 (45%), Gaps = 19/347 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ E V D Y +L A IL G +H ++ G + L+ Y
Sbjct: 240 LMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGR 299
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---LK-DVTSFNIMISG 116
+ A K+F+ MP K+II+W ++L + AM+L MP LK D+ + + +++
Sbjct: 300 VRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTS 359
Query: 117 YARI------GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A + ++H+ Y D NSLI Y + +A ++F +V+
Sbjct: 360 CASLHALEFGTQVHA--YTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVV 417
Query: 171 TWNTMVTGYLRSQLYIEVVD---LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+N M+ GY R E+ D +F +M+ ++P LT S+L A A+L SL +IH
Sbjct: 418 LFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIH 477
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
GL + A +ALI +Y+ C ++ S VF + +VKD+ WN+M G
Sbjct: 478 GLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENE 537
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG----CELFSR 330
AL L E+ S + D+ TF+ +++A + +Q G C+L R
Sbjct: 538 EALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKR 584
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 149/308 (48%), Gaps = 11/308 (3%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
++HGQ I +G Y+ L+ +Y + A KVFEKMPE++++ W++M+ A G
Sbjct: 65 VVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHG 124
Query: 91 QMDHAMKL-IDLMPLKDVTSFNIMISGYARI--GKIHSARYIFDKVPA--------KDVV 139
+ ++ + +D + + ++S + + G S R++ ++ + +DV
Sbjct: 125 FYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVY 184
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
LI Y G ++ A +F + K+ +TW TM++G ++ + LF ++ GN
Sbjct: 185 VGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGN 244
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V PD +++VLSAC+ L LE G +IH + G + LID Y KCG + +
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAH 304
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
++F K++ W ++ G + A++L M +K D +L++C+
Sbjct: 305 KLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLH 364
Query: 320 LVQEGCEL 327
++ G ++
Sbjct: 365 ALEFGTQV 372
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 257/460 (55%), Gaps = 14/460 (3%)
Query: 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE 73
P ++KA G L G +H +K GF V+V +L+ MY + DA K+F+ MP
Sbjct: 1 PPVVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57
Query: 74 KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----ARIGKIHSAR-- 127
+D +WN+M+ + G A+ + D M L+ V I ++ A++G I S +
Sbjct: 58 RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117
Query: 128 --YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
Y+ ++ N+LI Y G + A ++F +L+K+V++WNT++TGY ++ L
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGLA 176
Query: 186 IEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
E ++++ M+ + P+ T S+L A +++G+L+ G RIH N L S+ T
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LIDMY KCG ++ ++ +FY+ K+ WNAMI +HG G AL+L EM VK D
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPD 296
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITF+ LLSACSH+GLV + F+ ME+++G+ L+HYGCMVDL GRA L+ A I
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFI 356
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
+ MP +P S GALL+AC IH ++E+G ++ + + + + G ++ +N+YA+ G+W
Sbjct: 357 KKMPIQPDASAWGALLNACRIHGNIELGKHASERL-FEVDSENVGYYVLLSNIYANVGKW 415
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
E + R++ D G+ K G S I +N F G H
Sbjct: 416 EGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTH 455
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 136/283 (48%), Gaps = 16/283 (5%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
P+ + ILS G ++H IK G ++V AL+ MY + A KVF +
Sbjct: 102 LPVCAQVGDILS----GKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI 157
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNIMISGYARIGKIHSAR 127
KD+++WN+++ +A G A+++ LM + + ++ ++ Y+ +G +
Sbjct: 158 -KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGM 216
Query: 128 YIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
I +V DV LI Y G+++ A +F ++ KN + WN M++ Y
Sbjct: 217 RIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHG 276
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHAT 242
+ ++LF EMKA VKPD++T S+LSAC++ G + ++ + G+ +
Sbjct: 277 DGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHY 336
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
++D++ + G +E + K ++ D W A++ +HG
Sbjct: 337 GCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHG 379
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/468 (33%), Positives = 253/468 (54%), Gaps = 25/468 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ G+ D Y+ ++KA G+ G +HGQ K GF V +QTALL MYG
Sbjct: 70 VRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYGLFDE 129
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-- 118
++F++MP++D++ WN+++ A+A G + ++ + D+ S N+ +G
Sbjct: 130 DCGLQQIFDEMPQRDLVMWNALIAAYAH-GNCPYKVREVSY----DMVSSNVKPNGVTAV 184
Query: 119 ------------RIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
R GK +H Y+ + DV N+LI Y+ G + A ++F+ M
Sbjct: 185 SILSVCSSLRALREGKAVHG--YVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMP 242
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
++NV++W +++ GY + E + F +M+A N++PD +TV V+ C+ L S E G
Sbjct: 243 MRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEW 302
Query: 226 IHVYATDNGLA-SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
I Y GL +P L+DM+AKCG+I+++ ++F + K + W MI GLA++G
Sbjct: 303 ISQYVVKTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEEKTIVSWTIMIQGLAMYG 362
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
+G +AL +M K D + F+ LLSACSHAGLV EG FS ME D+ + +EHY
Sbjct: 363 HGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHIXPWMEHY 422
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
GCMVD+L RA L+D A + ++ MP +P + LL AC ++ + ++V +C
Sbjct: 423 GCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACXXQGNISLANQVMNXLCELGP 482
Query: 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT-AGSSVIEVN 451
S+ + ++ +NL+AS +W+ R M D G+ K G S IE +
Sbjct: 483 KKSE-DYVLLSNLFASNAEWDNVXEVRKEMGDRGVTKQDPGCSFIEAD 529
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 110/238 (46%), Gaps = 13/238 (5%)
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
+K VVS+ S+ L G A + ++ + TWNT++ GYL E + +++
Sbjct: 14 SKLVVSFASITLP----GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILIYNH 69
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA---- 250
++ +K D T+ V+ AC + G +IH G TAL+ MY
Sbjct: 70 VRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYGLFDE 129
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
CG ++Q +F + +D+ WNA+I A Y ++ +M S VK + +T +
Sbjct: 130 DCG-LQQ---IFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVS 185
Query: 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+LS CS ++EG + + K+ + + + ++D+ + + A+++ + MP
Sbjct: 186 ILSVCSSLRALREGKAVHGYVTKNL-IEXDVFVHNALIDVYSKCGSIRDAVQVFQLMP 242
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 159/468 (33%), Positives = 250/468 (53%), Gaps = 45/468 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D Y+FP +LKA G L G +H K GF +V+V +L+ MY A
Sbjct: 114 IRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 170
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD--------VTSFNIMISGY 117
+F+ MP +D+ +WN+M+ G A+ ++D M L+ V+ + + Y
Sbjct: 171 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMY 230
Query: 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
A++G + SA +F+ +P VK+VI+WNT++T
Sbjct: 231 AKLGLLDSAHKVFEIIP-------------------------------VKDVISWNTLIT 259
Query: 178 GYLRSQLYIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY ++ L E ++++ M+ + P+ T S+L A A++G+L+ G +IH L
Sbjct: 260 GYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLH 319
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ T LID+Y KCG + ++ +FY+ + WNA+I +HG+ LKL GEM
Sbjct: 320 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 379
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
D VK D +TF+ LLSACSH+G V+EG F R+ +++G+ L+HYGCMVDLLGRA
Sbjct: 380 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRAGY 438
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L+ A + I+ MP +P SI GALL AC IH ++E+G + A + + + G ++ +N
Sbjct: 439 LEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELG-KFASDRLFEVDSKNVGYYVLLSN 497
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+YA+ G+WE ++ R++ + G+ KT G S IEVN F G H
Sbjct: 498 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSH 545
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 129/297 (43%), Gaps = 50/297 (16%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+++ YA +G + +R FD++P KDV +WNS+I AY + G +A F ++L+
Sbjct: 57 LVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLL------ 110
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++PD+ T VL AC G+L G +IH +A
Sbjct: 111 ------------------------VSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFK 143
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G N +LI MY++ G + +F +D+ WNAMI GL +G AL +
Sbjct: 144 LGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 203
Query: 293 LGEMNDSCVKADDITFIGLLSAC----SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
L EM +K + +T + +L + GL+ ++F + + + + ++
Sbjct: 204 LDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIP-----VKDVISWNTLI 258
Query: 349 DLLGRARLLDRAIELI-------EAMPFEPTE-SILGALLSACVIHQDLEIGDRVAK 397
+ L AIE+ E +P + T SIL A + Q ++I RV K
Sbjct: 259 TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIK 315
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 165/464 (35%), Positives = 248/464 (53%), Gaps = 48/464 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ V + ++FP + KA G G +HG +K G +V + +++MY S
Sbjct: 103 VEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGV 162
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA ++F + D C + + +D
Sbjct: 163 MEDAHRLFYRRVFVD------------GCDGIRDKKRRVD-------------------- 190
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
DVV WN +I Y GE+E A +F +M ++V++WN M+ GY
Sbjct: 191 ---------------GDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYA 235
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+S + E V++F EM+ V P+Y+T+ SVL A + LG+LE G +H+YA N + +
Sbjct: 236 QSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDV 295
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ALIDMYAKCGSIE++L+VF ++V W+ +I GLA+HG L +M +
Sbjct: 296 LGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAG 355
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V D+T+IGLLSACSHAGLV EG F M + G+ ++EHYGCMVDLLGRA LL+ +
Sbjct: 356 VMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEES 415
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
ELI MP +P + I ALL AC +H ++E+G RVA+ + + + S G + +N+YAS
Sbjct: 416 EELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDS-GSYVALSNIYAS 474
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G WE + R MM + + K G S IE++G H+FL H
Sbjct: 475 LGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSH 518
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/472 (32%), Positives = 262/472 (55%), Gaps = 15/472 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + D Y+ P LL AA H + G H + +L+ MY +L
Sbjct: 107 MLRAALRPDAYTLPFLLLAAARAPEPPFARSAHALLCRLGLQAHDHTVHSLVTMYSNLGD 166
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN-----IMIS 115
A +VF+ +P +D+++WN+M+ A+ G ++ M + + N ++++
Sbjct: 167 PLAARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVAVVLA 226
Query: 116 GYARIGKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
G + R++ + V + ++ + ++L+ Y GEM +A +F + K+V+
Sbjct: 227 ACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVVA 286
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN M+TGY ++ + E + LF M+ PD +T+ VLSACA +G+LE G + YA+
Sbjct: 287 WNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTELDAYAS 346
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
GL N + TAL+DMY+KCG ++++++VF K K+ WNA+I GLA +G G+ A++
Sbjct: 347 HRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNGRGHEAIR 406
Query: 292 LLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
M N+ ++ DDITFIG+LSAC HAGL+++G F+ + +F + K+EHY CMVDL
Sbjct: 407 QFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKIEHYSCMVDL 466
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK--MVCAKSNYLSD 408
L RA L+ A + +E +P + +LGALL+AC +++E+ +RV M SN +
Sbjct: 467 LARAGHLEEAWDFVEKIPGKADAVMLGALLAACRKCKNVEVSERVINRIMQLEPSNSWN- 525
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
++ + +YAS + +++ + R +M + G+ K G S +EV+G +F AG
Sbjct: 526 --YVVSSKIYASSDRLDDSAKMRGLMRERGVSKIPGCSWVEVSGKVLEFYAG 575
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 103/271 (38%), Gaps = 34/271 (12%)
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
LF M ++PD T+ +L A A H GL ++ H +L+ MY+
Sbjct: 103 LFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARSAHALLCRLGLQAHDHTVHSLVTMYS 162
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFI 309
G + VF +DV WNAM+ G ++ +M ++ V +++T
Sbjct: 163 NLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVA 222
Query: 310 GLLSACSHAG-LV---------------------------QEGCELFSRMEKDF-GVTRK 340
+L+AC AG LV E C + + F G+ K
Sbjct: 223 VVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHK 282
Query: 341 -LEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGDRVA 396
+ + M+ + + AI L +M E P + L +LSAC LE+G +
Sbjct: 283 DVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTELD 342
Query: 397 KMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
+ Y + ++Y+ CG ++A
Sbjct: 343 AYASHRGLYGNVYVGTALVDMYSKCGDLDKA 373
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 204/339 (60%), Gaps = 1/339 (0%)
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
A+ +F K+ ++++V ++I Y+ G +E A +F +M K+++ W+ M++GY S
Sbjct: 2 AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
E ++LF EM+ +KPD +T+ SV+SACA LG L+ IH+Y NGL AL
Sbjct: 62 QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
IDMYAKCG++ + VF K Q ++V W +MI A+HG ALK +M D +K +
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+TF+G+L ACSHAGLV+EG F+ M + +T K EHYGCMVDL GRA LL A+EL+E
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
MP P I G+L++AC IH + E+G+ AK V + DG L+ +N+YA +W+
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVL-ELEPDHDGALVQLSNIYAKDRRWQ 300
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ RN+M GI K G S IE+N ++F+ H
Sbjct: 301 DVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKH 339
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 20/253 (7%)
Query: 47 VQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-- 104
V TA++ Y + ++DA +F++M EKD++ W++M+ +A + A+ L M +
Sbjct: 16 VLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFG 75
Query: 105 --KDVTSFNIMISGYARIGKIHSARYI---FDK------VPAKDVVSWNSLILAYTNAGE 153
D + +IS AR+G + A++I DK +P N+LI Y G
Sbjct: 76 IKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVN-----NALIDMYAKCGN 130
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+ A +F+KM +NVI+W +M+ + + F +MK N+KP+ +T VL A
Sbjct: 131 LGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYA 190
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTA-LIDMYAKCGSIEQSLEVFYKSQV-KDVF 271
C++ G +E G R T+ + H ++D++ + + +LE+ + +V
Sbjct: 191 CSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVV 250
Query: 272 CWNAMILGLALHG 284
W +++ +HG
Sbjct: 251 IWGSLMAACQIHG 263
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 42/259 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D + ++ A L +H K G G + V AL+ MY
Sbjct: 71 MQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGN 130
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A VFEKM +++I+W SM++AFA G +A+K +KD NI +G +
Sbjct: 131 LGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKF--FYQMKDE---NIKPNGVTFV 185
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT-----WNTM 175
G ++ A ++AG +E+ F M ++ IT + M
Sbjct: 186 G----------------------VLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCM 223
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V + R+ L + ++L + M + P+ + S+++AC G E G +A L
Sbjct: 224 VDLFGRANLLRDALELVETMP---LAPNVVIWGSLMAACQIHGENELGE----FAAKQVL 276
Query: 236 ASNPHATTALI---DMYAK 251
P AL+ ++YAK
Sbjct: 277 ELEPDHDGALVQLSNIYAK 295
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 217/370 (58%), Gaps = 2/370 (0%)
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
G+ HA L P ++T N +I Y + + A +FD + +D +SWNS+I +
Sbjct: 138 GKQVHA-HLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHV 196
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G+M KAG +F M + +++W M++GY R Y + + +F +M+ V+PD +++ S
Sbjct: 197 GVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIIS 256
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
VL ACA LG+LE G IH+Y NGL AL++MY+KCG I Q+ ++F + D
Sbjct: 257 VLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGD 316
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
V W+ MI GLA HG A++L M + ++ + ITF+GLLSAC+HAG EG F
Sbjct: 317 VISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFD 376
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M KD+ + ++EHYGC+VD+LGRA L +A+++IE MP +P I G+LLS+C H +L
Sbjct: 377 SMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNL 436
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+I +A + G ++ +N+YA +W+ +R R ++ + KT GSS+I+
Sbjct: 437 DIA-IIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLID 495
Query: 450 VNGSYHKFLA 459
+N +F++
Sbjct: 496 INNVVQEFVS 505
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 148/322 (45%), Gaps = 41/322 (12%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E + D ++FP ++K+ L +G +H K G ++ ++ AL+ MY +
Sbjct: 112 ENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLL 171
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
DA KVF+ M E+D I+WNS++ GQM A L DLMP + + S+ MISGY R+G
Sbjct: 172 DAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGS 231
Query: 123 IHSARYIFDKVP----------------------AKDVVSW-----------------NS 143
A Y+F ++ A +V W N+
Sbjct: 232 YADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNA 291
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ Y+ G + +A ++F +M +VI+W+TM+ G E ++LF MK ++P+
Sbjct: 292 LMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPN 351
Query: 204 YLTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T +LSACA+ G G A + D + L+D+ + G + Q+L+V
Sbjct: 352 GITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVI 411
Query: 263 YKSQVK-DVFCWNAMILGLALH 283
K +K D W +++ H
Sbjct: 412 EKMPMKPDSKIWGSLLSSCRTH 433
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 39/249 (15%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYI-------EVVDLFDEMKAGNVKPDYLTVTS 209
A +FK++ N +N M+ + +++Y E++ L D + PD T
Sbjct: 65 ASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPF 124
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
V+ +C+ L G ++H + G SN ALIDMY KC S+ + +VF +D
Sbjct: 125 VIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERD 184
Query: 270 VFCWNAMILGLA--------------------------LHGY----GYA-ALKLLGEMND 298
WN++I G + GY YA AL + +M
Sbjct: 185 AISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQI 244
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
V+ D+I+ I +L AC+ G ++ G + +++ G+ RK ++++ + +
Sbjct: 245 VGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRN-GLLRKTSICNALMEMYSKCGCIG 303
Query: 359 RAIELIEAM 367
+A +L + M
Sbjct: 304 QAYQLFDQM 312
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 121/261 (46%), Gaps = 19/261 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ +GV D S +L A L + +G +H + G + AL++MY C
Sbjct: 242 MQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGC 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
I A+++F++M + D+I+W++M+ A+ G+ A++L M + I ++S
Sbjct: 302 IGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSA 361
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
A G + FD + +V + L+ AG + +A ++ +KM +K +
Sbjct: 362 CAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSK 421
Query: 171 TWNTMVTG-YLRSQLYIEVVDL--FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
W ++++ S L I ++ + +E++ + +Y+ ++++ A+L + +R+
Sbjct: 422 IWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTG-NYVLLSNIY---ADLAKWDGVSRMR 477
Query: 228 VYATDNGLASNPHATTALIDM 248
+ P ++LID+
Sbjct: 478 KLIKSKSMKKTP--GSSLIDI 496
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/352 (40%), Positives = 219/352 (62%), Gaps = 3/352 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N M+ Y G+I AR +FD++P +DVVSWNS+I Y AGE+E A ++F+ M K+V+
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVV 207
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TW +M++ Y++++ ++ +DLF EM + ++PD + SVLSA A+LG +E G +H Y
Sbjct: 208 TWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYV 267
Query: 231 TDNGLA-SNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYA 288
+ N + S+ +ALIDMY+KCG IE + VF S +++ WN+MI GLA+HG
Sbjct: 268 SMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLARE 327
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL + EM ++ ++ITF+GLLS CSH GLV+EG F M + + + +++HYGCM+
Sbjct: 328 ALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMI 387
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DL GRA L+ A+ +I+ MPFE A+LSA + H +EIG + A + +
Sbjct: 388 DLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIG-KSAALRAIELAPDDS 446
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
++ +N+YA G+W++ + R MM G+ K AG S + VNG H+FL G
Sbjct: 447 SSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLG 498
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 151/319 (47%), Gaps = 45/319 (14%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
+S P +LKA G L + G +HGQ +KT +V ++++MY I+ A +VF++
Sbjct: 110 FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR 169
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY------------- 117
MP +D+++WNSM+ + G+++ A K+ + M KDV ++ MIS Y
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLF 229
Query: 118 ----------------------ARIGKIHSARYI-----FDKVPAKDVVSWNSLILAYTN 150
A +G + +++ +K+ ++LI Y+
Sbjct: 230 REMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSK 289
Query: 151 AGEMEKAGEMFKKML-VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G +E A +F+ + +N+ WN+M++G L E +D+F EM+ +++P+ +T
Sbjct: 290 CGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLG 349
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATT--ALIDMYAKCGSIEQSLEVFYKSQV 267
+LS C++ G +E G + + + P +ID++ + G +E +L V
Sbjct: 350 LLSTCSHGGLVEEG-QFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPF 408
Query: 268 K-DVFCWNAMILGLALHGY 285
+ D+ W A++ HG+
Sbjct: 409 EADLLAWKAILSASMKHGH 427
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 166/475 (34%), Positives = 259/475 (54%), Gaps = 13/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V D+ + LL L G+++H IK G ++V AL+ MY
Sbjct: 231 MRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGE 290
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
+ A +F +M +DI++WNS+L AF + A+ + + M + D+ + + S
Sbjct: 291 LRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASV 350
Query: 117 YARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
A +G S+R I V + D+ N++I Y G ++ A ++F+ + VK+VI+
Sbjct: 351 AAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVIS 410
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMK--AGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
WN+++TGY ++ L E +D++ M+ +G V P+ T S+L+A + LG+L+ G + H
Sbjct: 411 WNSLITGYSQNGLANEAIDVYSSMRYYSGAV-PNQGTWVSILTAHSQLGALKQGMKAHGQ 469
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
N L + +T L+DMY KCG + +L +FY+ + WNA+I LHGYG A
Sbjct: 470 LIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKA 529
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+KL EM VK D ITF+ LLSACSH+GLV EG F M++ +G+ L+HYGCMVD
Sbjct: 530 VKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVD 589
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
L GRA L++A ++ MP P S+ GALL AC IH+++E+ V+ + K + G
Sbjct: 590 LFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLL-KVESENVG 648
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA G WE + R++ D G+ KT G S IEV+ F G H
Sbjct: 649 YYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTH 703
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/437 (25%), Positives = 212/437 (48%), Gaps = 26/437 (5%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ +D+Y+FP +++A G L G +H +K GF VY+ + + Y + A
Sbjct: 138 LQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLAC 194
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR------ 119
+F+ M +DI WN+M+ F G++ A+++ D M K V+ ++ IS
Sbjct: 195 NLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLD 254
Query: 120 --IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
I + Y D+ N+LI Y GE+ A +F +M V+++++WN+++
Sbjct: 255 DIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLA 314
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
+ +++ + + ++++M + V PD LT+ S+ S A LG+ + IH + T
Sbjct: 315 AFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFL 374
Query: 238 NPHAT-TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ A A+IDMYAK G I+ + +VF VKDV WN++I G + +G A+ + M
Sbjct: 375 HDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSM 434
Query: 297 N-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
S + T++ +L+A S G +++G + ++ K+F + + C+VD+ G+
Sbjct: 435 RYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCG 493
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L A+ L +P + + S A++S +H G + K+ + + + F
Sbjct: 494 KLADALSLFYEVPHQSSVS-WNAIISCHGLHG---YGLKAVKLFKEMQSEGVKPDHITFV 549
Query: 416 NLYASC--------GQW 424
+L ++C GQW
Sbjct: 550 SLLSACSHSGLVDEGQW 566
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 146/324 (45%), Gaps = 37/324 (11%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA--------------- 126
+++ +A G + HA D + KDV ++N MIS YARIG H+A
Sbjct: 81 LINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQS 140
Query: 127 -RYIFDKVPAK---------------------DVVSWNSLILAYTNAGEMEKAGEMFKKM 164
Y F V DV S I Y+ G + A +F M
Sbjct: 141 DHYTFPPVIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNM 200
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+++++ TWN M++G+ + E +++FDEM+ +V D +T++S+L C L + +G
Sbjct: 201 MIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGV 260
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
IHVYA GL + ALI+MYAK G + + +F + +V+D+ WN+++ +
Sbjct: 261 LIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNK 320
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
AL + +M+ V D +T + L S + G + + + +
Sbjct: 321 KPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALG 380
Query: 345 GCMVDLLGRARLLDRAIELIEAMP 368
++D+ + +D A ++ E +P
Sbjct: 381 NAIIDMYAKLGFIDSARKVFEGLP 404
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 54/217 (24%)
Query: 225 RIHVYATDNGLASNPHA-------------TTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
RI +Y T LA HA + LI+ YA G I + F + Q KDV+
Sbjct: 48 RIFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVY 107
Query: 272 CWNAMILGLALHGYGYAALKLLGE-MNDSCVKADDITFIGLLSAC--------------- 315
WN+MI A G+ +AA+ E ++ S +++D TF ++ AC
Sbjct: 108 TWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLK 167
Query: 316 -----------------SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
S G V C LF M + R + + M+ +
Sbjct: 168 LGFECDVYIAASFIHFYSRFGFVSLACNLFDNM-----MIRDIGTWNAMISGFYLNGKVA 222
Query: 359 RAIELIEAMPFEPT--ESI-LGALLSACVIHQDLEIG 392
A+E+ + M F+ +S+ + +LL CV D+ G
Sbjct: 223 EALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISG 259
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 219/354 (61%), Gaps = 2/354 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+I Y++ G + AR +FD + + V+WN++I Y +G+++ A +MF KM +++I+W
Sbjct: 106 IIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISW 165
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+ G+++ + E + F EM+ V+PDY+ + + L+AC NLG+L G +H Y +
Sbjct: 166 TAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMN 225
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+N + +LID+Y +CG +E + EVF K + + V WN++I+G A +G + +L
Sbjct: 226 QDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVY 285
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M + K D +TF G L+ACSH GLV+EG F M++D+G++ ++EHYGC+VDL
Sbjct: 286 FRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYS 345
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIH-QDLEIGDRVAKMVCAKSNYLSDGEL 411
RA L+ A+++IE+MP +P E ++G+LL+AC H + + +R+ K + + N S
Sbjct: 346 RAGRLEDALKVIESMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHL-SDLNVKSHSNY 404
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
++ +N+YA+ G+WE A++ R M G+ K G S IE++ H F+AG H+
Sbjct: 405 VILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHV 458
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 176/389 (45%), Gaps = 55/389 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGL--MLHGQTIKTGF-CGHVYVQTALLKMYGS 57
M+ GV ++ +F LL G S L +LHG K G HV V TA++ MY
Sbjct: 53 MRLSGVEPNHITFIALLSGCGDFPSGSETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSK 112
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
+ A VF+ M + + + WN+M+D + GQ+D+A+K+ D MP +D+ S+ MI+G+
Sbjct: 113 RGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGF 172
Query: 118 ARIGKIHSA---------------------------------------RYIFDKVPAKDV 138
+ G A RY+ ++ +V
Sbjct: 173 VKKGFHEEALVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNV 232
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y G +E A E+F KM + V++WN+++ G+ + E + F +M+
Sbjct: 233 RVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEE 292
Query: 199 NVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KPD +T T L+AC+++G +E G R D G++ L+D+Y++ G +E
Sbjct: 293 GFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLED 352
Query: 258 SLEVFYKSQVKDVFCWNAMILGLAL-----HGYGYA-ALKLLGEMNDSCVKADDITFIGL 311
+L+V +K N +++G L HG A +L+ ++D VK+ I
Sbjct: 353 ALKVIESMPMKP----NEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNVKSHSNYVI-- 406
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRK 340
LS A EG R K G+ ++
Sbjct: 407 LSNMYAADGKWEGASQMRRKMKGLGLKKQ 435
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 37/236 (15%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL--GSLETGA 224
+ ++W + +T R+ E F +M+ V+P+++T ++LS C + GS
Sbjct: 25 ETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFPSGSETLSN 84
Query: 225 RIHVYATDNGL---------------ASNPHATTA-----------------LIDMYAKC 252
+H YA GL + H A +ID Y +
Sbjct: 85 LLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRS 144
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G ++ ++++F K +D+ W AMI G G+ AL EM S V+ D + I L
Sbjct: 145 GQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAAL 204
Query: 313 SACSHAGLVQEGCELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+AC++ G + G + M +DF ++ + ++DL R ++ A E+ + M
Sbjct: 205 NACTNLGALSFGLWVHRYVMNQDFKNNVRVSN--SLIDLYCRCGCVEFAREVFDKM 258
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 247/461 (53%), Gaps = 33/461 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ V D++SF ++KA S G +H Q +K G H++V T L+ MYG
Sbjct: 89 MRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGG--- 145
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
CG ++ A K+ D M ++ ++N +I+ R
Sbjct: 146 ----------------------------CGCVEFARKVFDEMHQPNLVAWNAVITACFRG 177
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR IFDK+ ++ SWN ++ Y AGE+E A +F +M ++ ++W+TM+ G
Sbjct: 178 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 237
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + E F E++ + P+ +++T VLSAC+ GS E G +H + G +
Sbjct: 238 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVS 297
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMY++CG++ + VF Q K + W +MI GLA+HG G A++L EM
Sbjct: 298 VNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAY 357
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V D I+FI LL ACSHAGL++EG + FS M++ + + ++EHYGCMVDL GR+ L +
Sbjct: 358 GVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQK 417
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A + I MP PT + LL AC H ++E+ ++V K + + + G+L++ +N YA
Sbjct: 418 AYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQV-KQRLNELDPNNSGDLVLLSNAYA 476
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ G+W++ R M I KT S++EV + +KF AG
Sbjct: 477 TAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAG 517
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 17/231 (7%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARI 226
+ +NT+V GY S V +F EM + G V PD + V+ A N SL TG ++
Sbjct: 61 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H A +GL S+ T LI MY CG +E + +VF + ++ WNA+I G
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITA-CFRGND 179
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-----L 341
A + E+ D + + ++ +L+ AG ++ +FS M V+ +
Sbjct: 180 VAGAR---EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 236
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG 392
H G + R L RA P E L +LSAC E G
Sbjct: 237 AHNGSFNESFLYFRELQRA-------GMSPNEVSLTGVLSACSQSGSFEFG 280
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 117/257 (45%), Gaps = 29/257 (11%)
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
+ +A +L+ P D FN ++ GY+ + H++ +F ++ K V +S A+
Sbjct: 47 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAF--- 103
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV---------------DLFDEMK 196
+ KA E F+ + + + G L S L++ +FDEM
Sbjct: 104 --VIKAVENFRSLRTGFQMHCQALKHG-LESHLFVGTTLIGMYGGCGCVEFARKVFDEMH 160
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+P+ + +V++AC G+ GAR ++ D L N + ++ Y K G +E
Sbjct: 161 ----QPNLVAWNAVITACFR-GNDVAGAR-EIF--DKMLVRNHTSWNVMLAGYIKAGELE 212
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ +F + +D W+ MI+G+A +G + E+ + + ++++ G+LSACS
Sbjct: 213 SAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACS 272
Query: 317 HAGLVQEGCELFSRMEK 333
+G + G L +EK
Sbjct: 273 QSGSFEFGKILHGFVEK 289
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 217/348 (62%), Gaps = 6/348 (1%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ DV ++ M++G+A G + AR+ FD +P K+VVSWN+++ AY AG + KA ++F +
Sbjct: 136 VADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDR 195
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +N TW +M+TG L+S E + +F +M A V P+ + S +SAC L +E G
Sbjct: 196 MPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTVSACTQLRWMEHG 255
Query: 224 ARIHVYATD--NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
+H YA NG S AT A++DMY KCGSI ++ VF V++++ WN+MI GLA
Sbjct: 256 TWVHGYAERELNGAMSAVLAT-AIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLA 314
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
++G AL L +M + V+ +DITFIGLLSACSH+GLV EG LF +M FG+
Sbjct: 315 MNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVP 374
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVC 400
EHYG MVDLLGR+ + A++ +++MP EP + GAL AC IH ++E+G+ VA K++
Sbjct: 375 EHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIE 434
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+ + S ++ +N+YA+ +W++ R ++ D + K G++++
Sbjct: 435 LEPQHGS--RYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIV 480
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 126/284 (44%), Gaps = 46/284 (16%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V T ++ + + ++ A F+ MPEK++++WN+ML A+A G + A KL D MP
Sbjct: 139 VVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPS 198
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV----------------------SW- 141
++ ++ MI+G + A +F + A VV +W
Sbjct: 199 RNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTVSACTQLRWMEHGTWV 258
Query: 142 -----------------NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+++ Y G + A +F M V+N+ +WN+M+ G +
Sbjct: 259 HGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGS 318
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHAT 242
+ + LF +M+ V+P+ +T +LSAC++ G ++ G R Y N G+ P
Sbjct: 319 ERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEG-RWLFYKMVNHFGIQPVPEHY 377
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVF--CWNAMILGLALHG 284
++D+ + G + ++++ F KS + W A+ +HG
Sbjct: 378 GLMVDLLGRSGHVREAVD-FVKSMPVEPHPGLWGALAGACKIHG 420
>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
Length = 950
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 140/402 (34%), Positives = 229/402 (56%), Gaps = 1/402 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D+A ++F++M E+++I W +M+ + ++D A KL ++MP K S+ M+ GY
Sbjct: 188 VDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLS 247
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+I A F+ +P K V++ N++I+A GE+ KA +F +M ++ TW M+ Y
Sbjct: 248 GRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYE 307
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R +E ++LF +M+ V+P + ++ S+LS CA L SL+ G ++H + + +
Sbjct: 308 RKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVY 367
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ L+ MY KCG + ++ VF + KD+ WN++I G A HG G ALK+ EM S
Sbjct: 368 VASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSG 427
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ +T I +L+ACS+ G ++EG E+F ME F VT +EHY C VD+LGRA +D+A
Sbjct: 428 TMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKA 487
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+ELI +M +P ++ GALL AC H L++ + AK + + + G ++ +++ AS
Sbjct: 488 MELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLF-EIEPENAGPYILLSSINAS 546
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
+W + R M + K G S IEV H F GGI
Sbjct: 547 RSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGI 588
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 14/284 (4%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
L+ Y R I++A VFE MPE+++++W +M+ + G + A L MP ++ S+
Sbjct: 85 LVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSW 144
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+M G G+I AR ++D +P KDVV+ ++I G +++A E+F +M +NVI
Sbjct: 145 TVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVI 204
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV--TSVLSACANLGSLETGAR-IH 227
TW TM+TGY +++ LF+ M P+ V TS+L G +E
Sbjct: 205 TWTTMITGYGQNKRVDVARKLFEVM------PEKTEVSWTSMLLGYTLSGRIEDAEEFFE 258
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
V +A N A+I + G I ++ VF + + +D W MI G+
Sbjct: 259 VMPMKPVIACN-----AMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFEL 313
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
AL+L +M V+ + I +LS C+ +Q G ++ + +
Sbjct: 314 EALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 137/272 (50%), Gaps = 12/272 (4%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
+A ++F++MPE++I++WN ++ + ++ A + ++MP ++V S+ M+ GY + G
Sbjct: 66 EARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGM 125
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ A +F ++P ++ VSW + + G ++ A +++ M K+V+ M+ G R
Sbjct: 126 VVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCRE 185
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E ++FDEM+ NV +T T++++ ++ ++ + S
Sbjct: 186 GRVDEAREIFDEMRERNV----ITWTTMITGYGQNKRVDVARKLFEVMPEKTEVS----W 237
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
T+++ Y G IE + E F +K V NAMI+ L G A ++ +M D
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDR--- 294
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
D+ T+ G++ A G E ELF++M++
Sbjct: 295 -DNATWRGMIKAYERKGFELEALELFAQMQRQ 325
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 123/249 (49%), Gaps = 12/249 (4%)
Query: 83 LDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
+ + GQ++ A K D + K + S+N ++SGY G AR +FD++P +++VSWN
Sbjct: 24 ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWN 83
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
L+ Y +E+A +F+ M +NV++W MV GY++ + +E LF M N
Sbjct: 84 GLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERN--- 140
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
++ T + + G ++ +++ D + A+T +I + G ++++ E+F
Sbjct: 141 -EVSWTVMFGGLIDGGRIDDARKLY----DMMPGKDVVASTNMIGGLCREGRVDEAREIF 195
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ + ++V W MI G + A KL M + ++++ +L + +G ++
Sbjct: 196 DEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKT----EVSWTSMLLGYTLSGRIE 251
Query: 323 EGCELFSRM 331
+ E F M
Sbjct: 252 DAEEFFEVM 260
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 49/260 (18%)
Query: 114 ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
IS +RIG+I+ AR FD + K + SWNS++ Y G +A +MF +M +N+++WN
Sbjct: 24 ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWN 83
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
+V+GY+++++ E ++F+ M NV
Sbjct: 84 GLVSGYIKNRMIEEARNVFEIMPERNVV-------------------------------- 111
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
+ TA++ Y + G + ++ +F++ ++ W M GL G A KL
Sbjct: 112 -------SWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLY 164
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
D D + ++ G V E E+F M + R + + M+ G+
Sbjct: 165 ----DMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRE-----RNVITWTTMITGYGQ 215
Query: 354 ARLLDRAIELIEAMPFEPTE 373
+ +D A +L E MP E TE
Sbjct: 216 NKRVDVARKLFEVMP-EKTE 234
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 128/282 (45%), Gaps = 40/282 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV S +L L+S G +H ++ F G VYV + L+ MY
Sbjct: 322 MQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGE 381
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+ A VF++ P KDII WNS++ +AS G + A+K+ MPL + +++
Sbjct: 382 LVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTA 441
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ GK+ IF+ + +K V+ ++ + AG+++KA E+ M +K +
Sbjct: 442 CSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDAT 501
Query: 171 TWNTMVTGYLRSQLYIEVVD-----LFDEMKAGNVKPDYLTVTSVLSACANLGS------ 219
W ++ G ++ +++ + LF E++ N P Y+ ++S+ ++ + G
Sbjct: 502 VWGALL-GACKTHSRLDLAEVAAKKLF-EIEPENAGP-YILLSSINASRSKWGDVAEMRK 558
Query: 220 ---------------LETGARIHVYATDNGLASNPHATTALI 246
+E G ++H++ T G+ ++P L+
Sbjct: 559 NMRTKNVSKFPGCSWIEVGKKVHMF-TRGGIRNHPEQAMILM 599
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 162/473 (34%), Positives = 250/473 (52%), Gaps = 18/473 (3%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
LGV D + +L A + + +G LHG +K F V LL MY ++
Sbjct: 565 LGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNG 624
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYAR 119
A +VF KM + I++W S + A+ G A+ L D M K D+ + ++ A
Sbjct: 625 ATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACAC 684
Query: 120 IGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ R Y+ ++ N+LI Y G +E+A +F K+ VK++++WNTM
Sbjct: 685 SSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTM 744
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ GY ++ L E ++LF +M+ KPD +T+ VL ACA L +L+ G IH + G
Sbjct: 745 IGGYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGY 803
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
S+ H AL+DMYAKCG + + +F KD+ W MI G +HG+G A+ E
Sbjct: 804 FSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNE 863
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + ++ D+ +F +L+ACSH+GL+ EG + F+ M + GV KLEHY C+VDLL R
Sbjct: 864 MRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMG 923
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA----KSNYLSDGEL 411
L +A + IE+MP +P +I G LLS C IH D+++ ++VA+ + + Y
Sbjct: 924 NLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRY-----Y 978
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ AN+YA +WEE + R M G + G S IEV G ++ F+AG H
Sbjct: 979 VVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKH 1031
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 199/377 (52%), Gaps = 12/377 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+LGV + Y+F +LK L +HG +K GF + V +L+ Y
Sbjct: 461 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGG 520
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
++ A +F+++ E D+++WNSM++ G + +++ M + D+T+ ++
Sbjct: 521 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 580
Query: 117 YARIGKIHSARYI----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+A IG + R + +++VV N+L+ Y+ G + A E+F KM +++W
Sbjct: 581 WANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 640
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+ + Y+R LY + + LFDEM++ V+PD TVTS++ ACA SL+ G +H Y
Sbjct: 641 TSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 700
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
NG+ SN T ALI+MYAKCGS+E++ VF K VKD+ WN MI G + + AL+L
Sbjct: 701 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALEL 760
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC-MVDLL 351
+M K DDIT +L AC+ + +G E+ + + G L H C +VD+
Sbjct: 761 FLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRR-GYFSDL-HVACALVDMY 817
Query: 352 GRARLLDRAIELIEAMP 368
+ LL A L + +P
Sbjct: 818 AKCGLLVLAQLLFDMIP 834
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/436 (22%), Positives = 187/436 (42%), Gaps = 44/436 (10%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H I G + L+ MY + + K+F+K+ + WN ++ +A
Sbjct: 388 GKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAK 447
Query: 89 CGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKDVVS 140
G ++ L M + + +F ++ +A +GK+ + Y+ +
Sbjct: 448 IGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV 507
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
NSLI AY G +E A +F ++ +V++WN+M+ G + + +++F +M V
Sbjct: 508 VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 567
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+ D T+ SVL A AN+G+L G +H + + + L+DMY+KCG++ + E
Sbjct: 568 EVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATE 627
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF K + W + I G A+ L EM V+ D T ++ AC+ +
Sbjct: 628 VFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 687
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR------ARLL----------------- 357
+ +G ++ S + K+ G+ L ++++ + ARL+
Sbjct: 688 LDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG 746
Query: 358 --------DRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
+ A+EL M F+P + + +L AC L+ G + + + Y S
Sbjct: 747 GYSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHI-LRRGYFS 805
Query: 408 DGELM-MFANLYASCG 422
D + ++YA CG
Sbjct: 806 DLHVACALVDMYAKCG 821
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 136/292 (46%), Gaps = 9/292 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D Y+ ++ A SS G +H IK G ++ V AL+ MY
Sbjct: 663 MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGS 722
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGY 117
+++A VF K+P KDI++WN+M+ ++ + A++L M + D + ++
Sbjct: 723 VEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMACVLPAC 782
Query: 118 ARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
A + + R I + + D+ +L+ Y G + A +F + K++I+W
Sbjct: 783 AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWT 842
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYATD 232
M+ GY E + F+EM+ ++PD + + +L+AC++ G L G + + +
Sbjct: 843 VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNE 902
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
G+ ++D+ A+ G++ ++ + +K D W ++ G +H
Sbjct: 903 CGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIH 954
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
SVL CA SLE G R+H NG++ + L+ MY CG + Q ++F K
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
VF WN ++ A G ++ L +M V + TF +L + G V+E
Sbjct: 434 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE 488
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 162/504 (32%), Positives = 257/504 (50%), Gaps = 41/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D+ ++ L A LSS G LH Q I++ C YV +A++++Y C
Sbjct: 285 MHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC 344
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM--PLKDVTSF-------- 110
+A +VF + +++ ++W ++ F G +++L + M L V F
Sbjct: 345 FKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISG 404
Query: 111 -----------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
N +IS YA+ G + +A IF + +D+VSW
Sbjct: 405 CSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSW 464
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNV 200
++ AY+ G + KA E F M +NVITWN M+ Y++ + + ++ M +V
Sbjct: 465 TGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDV 524
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD++T ++ CA++G+ + G +I + GL + A+I MY+KCG I ++ +
Sbjct: 525 IPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARK 584
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F KD+ WNAMI G + HG G A+++ +M K D I+++ +LS+CSH+GL
Sbjct: 585 IFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGL 644
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
VQEG F +++D V+ LEH+ CMVDLL RA L A LI+ MP +PT + GALL
Sbjct: 645 VQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALL 704
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC H + E+ + AK + + S G M+ A +YA G+ ++ + R +M D GI
Sbjct: 705 SACKTHGNNELAELAAKHLFDLDSPDSGG-YMLLAKIYADAGKSVDSAQVRKLMRDKGIK 763
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S +EV H F A + H
Sbjct: 764 KNPGYSWMEVKNKVHVFKAEDVSH 787
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 168/367 (45%), Gaps = 49/367 (13%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC---------- 60
++F +K+ G L + L L G K GF G V T ++ M+ +RC
Sbjct: 163 FTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMF--VRCGAVDFASKQF 220
Query: 61 -----------------------IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMK 97
+D A ++FE MPE+D+++WN M+ A + G+ A+
Sbjct: 221 SQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALS 280
Query: 98 LIDLMPLK----DVTSFNIMISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYT 149
+ M + D T++ ++ A++ + + + +V P D ++++ Y
Sbjct: 281 VAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYA 340
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G ++A +F + +N ++W ++ G+L+ + E ++LF++M+A + D + +
Sbjct: 341 KCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALAT 400
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
++S C+N + ++H + +G + +LI MYAKCG+++ + +F + +D
Sbjct: 401 IISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERD 460
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ W M+ + G A + M+ V IT+ +L A G ++G +++S
Sbjct: 461 IVSWTGMLTAYSQVGNIGKAREFFDGMSTRNV----ITWNAMLGAYIQHGAEEDGLKMYS 516
Query: 330 RM--EKD 334
M EKD
Sbjct: 517 AMLTEKD 523
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 140/314 (44%), Gaps = 40/314 (12%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI---- 99
+V ++ Y L + DA ++F +MP +D+ +WN+++ + G+ AM+
Sbjct: 94 NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153
Query: 100 ---DLMP------------------------LKDVTSFNI---------MISGYARIGKI 123
D +P L +T F ++ + R G +
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAV 213
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
A F ++ V NS++ Y + ++ A E+F+ M ++V++WN MV+ +S
Sbjct: 214 DFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSG 273
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E + + +M V+ D T TS L+ACA L SL G ++H + +P+ +
Sbjct: 274 RAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVAS 333
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
A++++YAKCG +++ VF + ++ W +I G +G +L+L +M +
Sbjct: 334 AMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTV 393
Query: 304 DDITFIGLLSACSH 317
D ++S CS+
Sbjct: 394 DQFALATIISGCSN 407
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 150/364 (41%), Gaps = 72/364 (19%)
Query: 80 NSMLDAFASCGQMDHAMKLI--DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKD 137
N++L A+ SCG + A L+ D+ +V + NIM++GYA++G + A +F ++P +D
Sbjct: 67 NTLLHAYLSCGALPDARGLLRGDITE-PNVITHNIMMNGYAKLGSLSDAEELFGRMPRRD 125
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V SWN+L+ Y +G A E F M ++
Sbjct: 126 VTSWNTLMSGYYQSGRFLDAMESFVSM------------------------------RRS 155
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
G+ P+ T + +C LG E ++ T G +P T ++DM+ +CG+++
Sbjct: 156 GDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDF 215
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGY-AALKLLGEMNDSCVKADDITFIGLLSACS 316
+ + F + + VFC N+M+ G A YG AL+L M + D +++ ++SA S
Sbjct: 216 ASKQFSQIERPTVFCRNSMLAGYA-KSYGVDHALELFESMPER----DVVSWNMMVSALS 270
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
+G R E VD+ R LD +
Sbjct: 271 QSG-------------------RAREALSVAVDMHNRGVRLD--------------STTY 297
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
+ L+AC L G ++ V + LYA CG ++EA R + + D
Sbjct: 298 TSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRD 357
Query: 437 TGIV 440
V
Sbjct: 358 RNTV 361
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 248/465 (53%), Gaps = 48/465 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ E V + ++FP +LKA +++ G +HG +K G +V T LL+MY
Sbjct: 108 LSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGS 167
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA +F + E +D + + + + +V N+M+ GYAR+
Sbjct: 168 MEDANVLFYRNVEG--------VDDVRNLVRDERGREF-------NVVLCNVMVDGYARV 212
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + + A E+F +M ++V++WN M++GY
Sbjct: 213 GNLKA-------------------------------ARELFDRMAQRSVVSWNVMISGYA 241
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ Y E +++F M + G+V P+ +T+ SVL A + LG LE G +H+YA N + +
Sbjct: 242 QNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDD 301
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+AL+DMYAKCGSIE++++VF + +V WNA+I GLA+HG L M
Sbjct: 302 VLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKC 361
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ D+T+I +LSACSHAGLV EG F+ M G+ K+EHYGCMVDLLGRA L+
Sbjct: 362 GISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEE 421
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A ELI MP +P + I ALL A +H++++IG R A+++ + + S G + +N+YA
Sbjct: 422 AEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDS-GAYVALSNMYA 480
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G W+ R MM D I K G S IE++G H+FL H
Sbjct: 481 SSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSH 525
>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 566
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 163/483 (33%), Positives = 264/483 (54%), Gaps = 27/483 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLM----LHGQTIKTGFCGHVYVQTALLKMYG 56
M+ +GV D ++FP +++A C M +HG K G +V+V +AL+ Y
Sbjct: 68 MRSVGVMPDKFTFPCVVRA-------CCEFMEVRKIHGCLFKMGLELNVFVGSALVNTYL 120
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFN 111
+ +DA KVFE++PE+D++ WN+M++ + G ++ A+ + M L T+ +
Sbjct: 121 KVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTS 180
Query: 112 IMISGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
I+ S +G I++ R I V + V N+LI Y E A +F+ + K
Sbjct: 181 IL-SILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEK 239
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
++ +WN++++ + + + + LF +M V PD +T+T+VL AC++L +L G IH
Sbjct: 240 DLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIH 299
Query: 228 VYATDNGLASNPHA-----TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
Y NGL N + A++DMYAKCG ++ + +F + KDV WN MI+G A+
Sbjct: 300 GYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAM 359
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
HGYG AL + M ++ +K D +TF+G+LSACSHAG V +G +RME +FGV +E
Sbjct: 360 HGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIE 419
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCA 401
HY C++D+LGRA L A +L + +P E + ALL AC +H + E+G+ V K+
Sbjct: 420 HYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQL 479
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+ + G ++ ++LY G++EEA R M + + KT G S IE+ + F G
Sbjct: 480 EPKHCGSGSYILMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIELKDGLYVFSMGD 539
Query: 462 IGH 464
H
Sbjct: 540 RTH 542
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 17/233 (7%)
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKML-VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
S SLI Y+ +ME+A +F+ +NV +N ++ G++ + L + + M++
Sbjct: 12 SITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSV 71
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
V PD T V+ AC + +IH GL N +AL++ Y K E +
Sbjct: 72 GVMPDKFTFPCVVRACCEFMEVR---KIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDA 128
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+VF + +DV WNAMI G G+ A+ + M + + T +LS +
Sbjct: 129 EKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSM 188
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGC------MVDLLGRARLLDRAIELIE 365
G + G + G+ K+ + C ++D+ G+ + + A+ + E
Sbjct: 189 GDINNGRAI-------HGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFE 234
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKS-QVKDVFCWNAMILGLALHGYGYAALK 291
+G P + T+LI+MY++C +E+++ VF ++VF +NA+I G +G +
Sbjct: 4 SGFIHLPSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQ 63
Query: 292 LLGEMNDSCVKADDITFIGLLSACS--------HAGLVQEGCEL 327
M V D TF ++ AC H L + G EL
Sbjct: 64 FYKRMRSVGVMPDKFTFPCVVRACCEFMEVRKIHGCLFKMGLEL 107
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 264/484 (54%), Gaps = 45/484 (9%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D +F LLK+ G S +G +H + G VY++ +L+KMY + A +F
Sbjct: 119 DEKTFLSLLKSVGCAS---VGKQVHAHVLVNGLHSRVYLRNSLIKMYLDAGDAETAEAMF 175
Query: 69 EKMPEKDIIAWNSML--------------------------DAFAS------CGQMDHAM 96
+ +P D+++ N ML D +A+ CG++ +A+
Sbjct: 176 QSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGVDQYAAVALLSCCGRLKNAL 235
Query: 97 -------KLIDLMPLKD--VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILA 147
++ M +KD + N ++ YA+ G++++A +F + KD +SWN++I
Sbjct: 236 LGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCGEMNTAMRVFGEAKEKDDISWNTMIAG 295
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
+ N G ++ A + F +++I+WNT++ GY R + + V++LF++M + V+PD +T
Sbjct: 296 FANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRCREFAAVMELFNDMLSSRVRPDKVTA 355
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+++SA + G+L G +H + + + L+DMY KCG+++ + VF K+
Sbjct: 356 VTLISAAVSKGALNLGKSVHGWVLKEHGTQDAFLASTLVDMYCKCGNVKLAYAVFEKALD 415
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
KDV W AMI GLA HG+G AL L M + V + +T + +LSACSHAGL+ EGCE+
Sbjct: 416 KDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVAPNGVTLVTVLSACSHAGLLDEGCEI 475
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F M+K F + ++EH+GCMVDLL R+ L A+ L MP +P+ SI G++LS Q
Sbjct: 476 FYTMQKRFNIEPRVEHFGCMVDLLARSGRLSDAVGLARMMPMKPSRSIWGSILSVSSSCQ 535
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
+ E+ + +K + + +G ++ +NLYA+ GQW +N+ R M G+ K+AG+S
Sbjct: 536 NTEVAEIASKELL-RLEPTEEGGYVLLSNLYAAGGQWNYSNKVRENMEMRGVRKSAGASG 594
Query: 448 IEVN 451
+ V+
Sbjct: 595 LAVD 598
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 46/301 (15%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH--VYVQTALLKMYGSLR 59
+E+GV D Y+ LL G L ++ +G +HG ++ + + ALL MY
Sbjct: 212 REIGV--DQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCG 269
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
++ A +VF + EKD I+WN+M+ FA+ G +D A K P +D+ S+N +++GY R
Sbjct: 270 EMNTAMRVFGEAKEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGR 329
Query: 120 ----------IGKIHSARYIFDKVPA----------------KDVVSW------------ 141
+ S+R DKV A K V W
Sbjct: 330 CREFAAVMELFNDMLSSRVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLKEHGTQDAFL 389
Query: 142 -NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
++L+ Y G ++ A +F+K L K+V W M++G E +DLF M+ V
Sbjct: 390 ASTLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGV 449
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQS 258
P+ +T+ +VLSAC++ G L+ G I Y P ++D+ A+ G + +
Sbjct: 450 APNGVTLVTVLSACSHAGLLDEGCEI-FYTMQKRFNIEPRVEHFGCMVDLLARSGRLSDA 508
Query: 259 L 259
+
Sbjct: 509 V 509
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 160/457 (35%), Positives = 243/457 (53%), Gaps = 30/457 (6%)
Query: 32 LHGQTIKTGFCG-HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSM-----LDA 85
LH Q + +G G H LL+ Y ++ I AF +FE++P D+ +N+M +D
Sbjct: 32 LHAQFVVSGLLGYHPLCARRLLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIRGLTMDN 91
Query: 86 FA------SCGQMDHAM-------KLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
F +C + ++I + D + +I Y G I A + +
Sbjct: 92 FTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDAERVLGE 151
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
++ ++ N++I Y G ++KA +MF M K+ +W+ ++TGY ++ ++ E + LF
Sbjct: 152 FSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALALF 211
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
+M ++ P+ + S+LSAC LG+L G IH Y + + TTALIDMYAK
Sbjct: 212 QDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTALIDMYAKS 271
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
GSIE +F K +DV W MI A+HG+ +L EM ++ + + F+ +L
Sbjct: 272 GSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVIFVAIL 331
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
SACSHAG V+EG + FS+ME FG+ +EHYGCMVDLLGRA LL A +LI +MP +P
Sbjct: 332 SACSHAGCVEEGRQYFSQMEHGFGIKPSIEHYGCMVDLLGRAGLLADAEQLILSMPKQPN 391
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL----SDGELMMFANL-YASCGQWEEA 427
I G+LL AC H DL+ G A N + + G+ A L +A+ G+ EEA
Sbjct: 392 SIIWGSLLGACRTHNDLKRG------TWAFENLMELEPTSGDRHKLAGLMFANAGEKEEA 445
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R M+++ +V T GSS IEV G+ H+F G H
Sbjct: 446 AKIRKMIHEKEMVTTCGSSFIEVEGAVHEFTVGYTVH 482
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 129/274 (47%), Gaps = 40/274 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ DN+++ +LKA L + G +H Q IK G ++ ++L+ MY + IDDA
Sbjct: 86 GLTMDNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDA 145
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR----- 119
+V + E++ +A N+M+ + + G++D A K+ D M KD S++ +I+GY +
Sbjct: 146 ERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHT 205
Query: 120 ------------------------------IGKIHSARYIFDKVPAKDVVSWNSLILA-- 147
+G +H R+I + V+ L A
Sbjct: 206 EALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTALI 265
Query: 148 --YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y +G +E +F+KM ++V+TW M++ + + LFDEM A ++P+ +
Sbjct: 266 DMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKV 325
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++LSAC++ G +E G R + ++G P
Sbjct: 326 IFVAILSACSHAGCVEEG-RQYFSQMEHGFGIKP 358
>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 615
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 163/445 (36%), Positives = 245/445 (55%), Gaps = 15/445 (3%)
Query: 28 IGLMLHGQTIKTGFCG-HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF 86
+G +H IK G V + +L+ MY +D+A KVF+ M EK II+W +M+ +
Sbjct: 168 LGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGY 227
Query: 87 ASCG----------QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK 136
G QM H ID + ++ S I + +HS + K
Sbjct: 228 VKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSL-VLKCGCNEK 286
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
D V N LI Y G + A +F ++ K++++W +M+ GY+ E +DLF M
Sbjct: 287 DPVE-NLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMI 345
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+++P+ T+ +V+SACA+LGSL G I Y NGL S+ T+LI MY+KCGSI
Sbjct: 346 RTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIV 405
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS-CVKADDITFIGLLSAC 315
++ EVF + KD+ W +MI A+HG G A+ L +M + + D I + + AC
Sbjct: 406 KAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLAC 465
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
SH+GLV+EG + F M+KDFG+T +EH C++DLLGR LD A+ I+ MP + +
Sbjct: 466 SHSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQV 525
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
G LLSAC IH ++E+G+ +A + S+ S G ++ ANLY S G+W+EA+ RN M+
Sbjct: 526 WGPLLSACRIHGNVELGE-LATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMD 584
Query: 436 DTGIVKTAGSSVIEVNGSYHKFLAG 460
G+VK +G S +EV +YH F G
Sbjct: 585 GKGLVKESGWSQVEVTDTYHTFAVG 609
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 178/360 (49%), Gaps = 17/360 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GVH +N ++PLLLKA L S G MLHG +K GF +VQTAL+ MY
Sbjct: 37 MAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSH 96
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
+ A +VF++MP++ +++WN+M+ A++ MD A+ L+ M + ++F ++SG
Sbjct: 97 VASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSG 156
Query: 117 YAR--------IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
Y+ +GK I + +V NSL+ Y M++A ++F M K+
Sbjct: 157 YSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKS 216
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+I+W TM+ GY++ +E LF +M+ +V D++ +++S C + L + +H
Sbjct: 217 IISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHS 276
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
G LI MYAKCG++ + +F K + W +MI G G+
Sbjct: 277 LVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGE 336
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL-----FSRMEKDFGVTRKLEH 343
AL L M + ++ + T ++SAC+ G + G E+ + +E D V L H
Sbjct: 337 ALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIH 396
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
+++ TWN M+ + + + ++++ M V + LT +L ACANL S++ G +
Sbjct: 9 RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H + G ++ TAL+DMY+KC + + +VF + + V WNAM+ +
Sbjct: 69 HGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSM 128
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSH 317
AL LL EM + TF+ +LS S+
Sbjct: 129 DQALSLLKEMWVLGFEPTASTFVSILSGYSN 159
>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Glycine max]
Length = 628
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 258/482 (53%), Gaps = 20/482 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ LG+ D ++FP +++A G + +HG K G V+V +AL+ Y R
Sbjct: 123 MRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRF 182
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG---- 116
+ +A++VFE++P +D++ WN+M++ FA G+ + A+ + M V ++G
Sbjct: 183 VGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSI 242
Query: 117 YARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++ +G + R + V VV N+LI Y + A +F+ M ++ +W
Sbjct: 243 FSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSW 302
Query: 173 NTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N++++ + R + + LFD M + V+PD +TVT+VL AC +L +L G IH Y
Sbjct: 303 NSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMV 362
Query: 232 DNGLASNPHA--------TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
NGLA AL+DMYAKCG++ + VF + KDV WN MI G +H
Sbjct: 363 VNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMH 422
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
GYG AL + M + + ++I+F+GLLSACSHAG+V+EG S ME +GV+ +EH
Sbjct: 423 GYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEH 482
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAK 402
Y C++D+L RA L A +L+ MPF+ +LL+AC +H D ++ + A K++ +
Sbjct: 483 YTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELE 542
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
++ G ++ +N+Y G++EE WR M + K G S IE+ H F+ G
Sbjct: 543 PDHC--GNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELVNGVHVFITGDR 600
Query: 463 GH 464
H
Sbjct: 601 TH 602
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 19/318 (5%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP---EKDIIAWNSMLDA 85
G LH +K F G T+L+ MY ID + +VF P K++ A+N+++
Sbjct: 48 GKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVF-NFPTHHNKNVFAYNALIAG 106
Query: 86 FASCGQMDHAMKLIDLMP----LKDVTSFNIMI-------SGYARIGKIHSARYIFDKVP 134
F + A+ L + M D +F +I G+ + KIH +F
Sbjct: 107 FLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFV-VTKIHG--LMFKVGL 163
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
DV ++L+ Y + +A +F+++ V++V+ WN MV G+ + + E + +F
Sbjct: 164 ELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRR 223
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M V P TVT VLS + +G + G +H + T G S + ALIDMY KC
Sbjct: 224 MGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKC 283
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE-MNDSCVKADDITFIGLLS 313
+ +L VF D+F WN+++ G Y L+L M S V+ D +T +L
Sbjct: 284 VGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLP 343
Query: 314 ACSHAGLVQEGCELFSRM 331
AC+H + G E+ M
Sbjct: 344 ACTHLAALMHGREIHGYM 361
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
KNV +N ++ G+L + L + L+++M+ + PD T V+ AC + +I
Sbjct: 95 KNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKI 154
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H GL + +AL++ Y K + ++ VF + V+DV WNAM+ G A G
Sbjct: 155 HGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRF 214
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL + M + V T G+LS S G G + + K G +
Sbjct: 215 EEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTK-MGYESGVVVSNA 273
Query: 347 MVDLLGRARLLDRAIELIEAM 367
++D+ G+ + + A+ + E M
Sbjct: 274 LIDMYGKCKCVGDALSVFEMM 294
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D T + L +CA+ +L G +H + N +P A T+LI+MY+KC I+ SL VF
Sbjct: 28 DLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVF 87
Query: 263 Y--KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
K+VF +NA+I G + AL L +M + D TF ++ AC
Sbjct: 88 NFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRAC 142
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 247/461 (53%), Gaps = 33/461 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ V D++SF ++KA S G +H Q +K G H++V T L+ MYG
Sbjct: 97 MRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGG--- 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
CG ++ A K+ D M ++ ++N +I+ R
Sbjct: 154 ----------------------------CGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR IFDK+ ++ SWN ++ Y AGE+E A +F +M ++ ++W+TM+ G
Sbjct: 186 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 245
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + E F E++ + P+ +++T VLSAC+ GS E G +H + G +
Sbjct: 246 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVS 305
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMY++CG++ + VF Q K + W +MI GLA+HG G A++L EM
Sbjct: 306 VNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAY 365
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V D I+FI LL ACSHAGL++EG + FS M++ + + ++EHYGCMVDL GR+ L +
Sbjct: 366 GVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQK 425
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A + I MP PT + LL AC H ++E+ ++V K + + + G+L++ +N YA
Sbjct: 426 AYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQV-KQRLNELDPNNSGDLVLLSNAYA 484
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ G+W++ R M I KT S++EV + +KF AG
Sbjct: 485 TAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAG 525
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 17/231 (7%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARI 226
+ +NT+V GY S V +F EM + G V PD + V+ A N SL TG ++
Sbjct: 69 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H A +GL S+ T LI MY CG +E + +VF + ++ WNA+I G
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITA-CFRGND 187
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-----L 341
A + E+ D + + ++ +L+ AG ++ +FS M V+ +
Sbjct: 188 VAGAR---EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 244
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG 392
H G + R L RA P E L +LSAC E G
Sbjct: 245 AHNGSFNESFLYFRELQRA-------GMSPNEVSLTGVLSACSQSGSFEFG 288
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 117/257 (45%), Gaps = 29/257 (11%)
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
+ +A +L+ P D FN ++ GY+ + H++ +F ++ K V +S A+
Sbjct: 55 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAF--- 111
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV---------------DLFDEMK 196
+ KA E F+ + + + G L S L++ +FDEM
Sbjct: 112 --VIKAVENFRSLRTGFQMHCQALKHG-LESHLFVGTTLIGMYGGCGCVEFARKVFDEMH 168
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+P+ + +V++AC G+ GAR ++ D L N + ++ Y K G +E
Sbjct: 169 ----QPNLVAWNAVITACFR-GNDVAGAR-EIF--DKMLVRNHTSWNVMLAGYIKAGELE 220
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ +F + +D W+ MI+G+A +G + E+ + + ++++ G+LSACS
Sbjct: 221 SAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACS 280
Query: 317 HAGLVQEGCELFSRMEK 333
+G + G L +EK
Sbjct: 281 QSGSFEFGKILHGFVEK 297
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 212/355 (59%), Gaps = 11/355 (3%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N ++ Y + + A +F+++ +D VSWN+LI + G+M +A +F++M K +
Sbjct: 156 NSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIF 215
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +V+GY R Y + ++ F M+ ++PD +++ SVL CA LG+LE G IH+YA
Sbjct: 216 SWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYA 275
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G N ALI+MYAKCGSI+Q +F + + +DV W+ MI+GLA HG A+
Sbjct: 276 DKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAI 335
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L EM + ++ ITF+GLL+AC+HAGL+ EG F M++D+ + +EHYGC+V+L
Sbjct: 336 ELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNL 395
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS--- 407
LG + LD+A+EL++ MP +P I G+LLS+C H +L+I V A + L
Sbjct: 396 LGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIA------VIAMEHLLELEP 449
Query: 408 --DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
G ++ +NLYA G+W+ +R R +M + KT G S IEV+ +F +G
Sbjct: 450 ADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASG 504
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 147/323 (45%), Gaps = 41/323 (12%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E + D ++FP ++K+ L +G +HG K G + V+ +L++MY +D
Sbjct: 110 ENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLD 169
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
DA +VFE+M E+D ++WN+++ GQM A + + M K + S+ ++SGYARIG
Sbjct: 170 DAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGC 229
Query: 123 IHSARYIFDKVP----------------------AKDVVSW-----------------NS 143
A F ++ A ++ W N+
Sbjct: 230 YADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNA 289
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y G +++ +F +M ++VI+W+TM+ G E ++LF EM+ ++P
Sbjct: 290 LIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPS 349
Query: 204 YLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T +L+ACA+ G L G R D + L+++ G ++Q+LE+
Sbjct: 350 IITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELV 409
Query: 263 YKSQVK-DVFCWNAMILGLALHG 284
K K D W +++ HG
Sbjct: 410 KKMPRKPDSPIWGSLLSSCRSHG 432
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 123/296 (41%), Gaps = 46/296 (15%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN------VKPDYL 205
GE E A +FK + N +N M+ Y +++Y+ + ++ +M GN + PD
Sbjct: 60 GETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQM-LGNPHGENPIFPDKF 118
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T V+ +CA L + G ++H + G SN +L++MY KC S++ + VF +
Sbjct: 119 TFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEM 178
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+D WN +I G G A + EM D + ++ ++S + G +
Sbjct: 179 TERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTI----FSWTAIVSGYARIGCYADAL 234
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
E F RM+ MV + EP E L ++L C
Sbjct: 235 EFFRRMQ--------------MVGI-------------------EPDEISLVSVLPDCAQ 261
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMNDTGIV 440
LE+G + + K+ +L + + +YA CG ++ R + M + ++
Sbjct: 262 LGALELGKWI-HIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVI 316
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 10/187 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ +G+ D S +L L + +G +H K GF ++ V AL++MY
Sbjct: 240 MQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGS 299
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
ID ++F++M E+D+I+W++M+ A+ G+ A++L M + +F +++
Sbjct: 300 IDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTA 359
Query: 117 YARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
A G ++ F+ + V + L+ +G +++A E+ KKM K +
Sbjct: 360 CAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSP 419
Query: 171 TWNTMVT 177
W ++++
Sbjct: 420 IWGSLLS 426
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 209/351 (59%), Gaps = 2/351 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y R G + +AR FD + KDVVSWN+LI A+ G+M +A E+F M K V+
Sbjct: 155 NSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVV 214
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +V+GY + V++F M+ +PD +++ +VL ACA LG+LE G I+ Y
Sbjct: 215 SWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYC 274
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ +G+ + AL++MYAKCG IE++L++F+ KDV W+ I GLA HG A+
Sbjct: 275 SKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAV 334
Query: 291 KLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+L M+ + V + ITF+GLLSACSHAGLV EG +M++D+GV +EHYGC+VD
Sbjct: 335 RLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVD 394
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGR+ + RA++ I MP P I G+LLSAC H D+E VA + G
Sbjct: 395 LLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETA-VVAAERLVELEPGDVG 453
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
L+M AN+Y + G+W E R + KT G S+IEV+ +F+AG
Sbjct: 454 NLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAG 504
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 150/318 (47%), Gaps = 42/318 (13%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D +++P LLKA G L++S +G +H ++G H VQ +L++MY + A K F
Sbjct: 115 DRFTYPFLLKACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAF 174
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ M EKD+++WN+++ A A GQM A +L MP K V S+ ++SGY +G A
Sbjct: 175 DGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVE 234
Query: 129 IFD----------------------KVPAKDVVSW-----------------NSLILAYT 149
+F ++ A ++ W N+L+ Y
Sbjct: 235 VFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYA 294
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVT 208
G +E+A ++F M K+VI+W+T + G E V LF+ M + G V P+ +T
Sbjct: 295 KCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFV 354
Query: 209 SVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+LSAC++ G ++ G R + D G+ ++D+ + G I+++L+ V
Sbjct: 355 GLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPV 414
Query: 268 -KDVFCWNAMILGLALHG 284
D W +++ HG
Sbjct: 415 PPDGKIWGSLLSACRSHG 432
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 120/292 (41%), Gaps = 51/292 (17%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM--------KAGNVKPDYLTVTSVL 211
+F ++ N+ N M+ Y ++ L+ + V+++ M AG D T +L
Sbjct: 64 VFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLL 123
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
AC L + G ++H + +G S+ +LI+MY +CG + + + F + KDV
Sbjct: 124 KACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVV 183
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN +I A G A +L M D V +++ L+S + G E+F M
Sbjct: 184 SWNTLISAHARMGQMRRARELFYSMPDKTV----VSWTALVSGYTAVGDFTGAVEVFRLM 239
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
+ + FEP + + A+L AC LE+
Sbjct: 240 QME---------------------------------GFEPDDVSIVAVLPACAQLGALEL 266
Query: 392 GDRVAKMVCAKSNYLSDGELMM---FANLYASCGQWEEANRWRNMMNDTGIV 440
G R C+K L G++ + +YA CG EEA + + M++ ++
Sbjct: 267 G-RWIYAYCSKHGML--GKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVI 315
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 34/227 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D+ S +L A L + +G ++ K G G VY+ AL++MY C
Sbjct: 239 MQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGC 298
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I++A ++F M EKD+I+W++ + A+ G+ A++L ++M + +M +G +
Sbjct: 299 IEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREG----RVMPNGITFV 354
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
G L+ A ++AG +++ +M + V + +
Sbjct: 355 G----------------------LLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCV 392
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
V RS + D ++ V PD S+LSAC + G +ET
Sbjct: 393 VDLLGRSG---RIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVET 436
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 214/351 (60%), Gaps = 3/351 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y + + A +FD++ + +SWN +I + G+M +A +F +M + ++
Sbjct: 134 NALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIV 193
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +++GY R YI+ +D+F EM+ ++PD ++ SVL ACA LG+LETG IH++
Sbjct: 194 SWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFC 253
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
NGL ALI+MY KCG I+Q+ ++F + + +DV W+ MI GLA HG A+
Sbjct: 254 ARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAI 313
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ M + +K + ITF+GLLSAC+HAG +EG F M+KDF + ++EHYG +VDL
Sbjct: 314 AIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDL 373
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD-G 409
LGRA L +A++++E MP +P I G+LLS+C H ++E+ V M + D G
Sbjct: 374 LGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVA--VIAMEHLEELEPDDTG 431
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
++ +N+YA G+W++ +R R ++ + KT G S+IEVN +F++G
Sbjct: 432 NYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSG 482
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 110/424 (25%), Positives = 185/424 (43%), Gaps = 51/424 (12%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D ++FP ++KA L +G +H Q K G H+ + AL+ MY + DA +
Sbjct: 93 PDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNL 152
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F++M E+ I+WN ++ GQM A L D MP + + S+ +ISGY RIG A
Sbjct: 153 FDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDAL 212
Query: 128 YIFD----------------------KVPAKDVVSW-----------------NSLILAY 148
+F K+ A + W N+LI Y
Sbjct: 213 DVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMY 272
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
T G +++A ++F +M ++VI+W+TM+ G E + +F+ MK N+KP+ +T
Sbjct: 273 TKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFV 332
Query: 209 SVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+LSACA+ G E G D + +L+D+ + G + Q+L++ K +
Sbjct: 333 GLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPM 392
Query: 268 K-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
K D W +++ H A+ + + + ++ DD LLS +A L + +
Sbjct: 393 KPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEE--LEPDDTGNYVLLSNI-YADLGK--WD 447
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
SRM K R + GC + + + A E + +P + LL H
Sbjct: 448 DVSRMRKLVRSKRMKKTPGCSL-----IEVNNVAQEFVSGDDSKPYSKEIFWLLELLAFH 502
Query: 387 QDLE 390
QD++
Sbjct: 503 QDMD 506
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 133/320 (41%), Gaps = 54/320 (16%)
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM---------KAGNVKPD 203
+M+ A +FK+++ N +N M+ + +Y +D + +M + PD
Sbjct: 35 DMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPD 94
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC----------- 252
T V+ ACA LG G ++H G S+ ALIDMY KC
Sbjct: 95 EFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFD 154
Query: 253 --------------------GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G + ++ +F + + + W A+I G G AL +
Sbjct: 155 EMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDV 214
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM + ++ D+ + I +L AC+ G ++ G + ++ G+ R+ ++++
Sbjct: 215 FREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARN-GLLRRTCICNALIEMYT 273
Query: 353 RARLLDRAIELIEAMPFEPT---ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
+ +D+A +L + M +++G L + + + + I +R+ ++N +G
Sbjct: 274 KCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERM-----KQTNIKPNG 328
Query: 410 ELMMFANLYASC---GQWEE 426
+ F L ++C G WEE
Sbjct: 329 --ITFVGLLSACAHAGFWEE 346
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 118/253 (46%), Gaps = 19/253 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D S +L A L + G +H + G + AL++MY C
Sbjct: 218 MQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGC 277
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
ID A ++F++M +D+I+W++M+ A+ G++ A+ + + M ++ +F ++S
Sbjct: 278 IDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSA 337
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
A G FD + ++ + SL+ AG + +A ++ +KM +K +
Sbjct: 338 CAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSK 397
Query: 171 TWNTMVTGYLRSQLYIEV----VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
W ++++ R+ IEV ++ +E++ + +Y+ ++++ A+LG + +R+
Sbjct: 398 IWGSLLSS-CRTHCNIEVAVIAMEHLEELEPDDTG-NYVLLSNIY---ADLGKWDDVSRM 452
Query: 227 HVYATDNGLASNP 239
+ P
Sbjct: 453 RKLVRSKRMKKTP 465
>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 662
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 242/419 (57%), Gaps = 16/419 (3%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMP-------------EKDIIAWNSMLDAFASCGQ 91
V+ L+ YG +D+A +F+K+P E+++++WN+M+ + G
Sbjct: 242 VHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGD 301
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
+ A KL D MP +D S+N MISGY + + A +F K+P+ D +SWN +I Y +
Sbjct: 302 VISARKLFDQMPDRDSFSWNTMISGYVHVLDMEEASNLFHKMPSPDTLSWNLMISGYAQS 361
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G +E A + F++M KN+++WN+++ GY ++ YI ++LF +M+ K D T++S+L
Sbjct: 362 GSLELAHDFFERMPQKNLVSWNSVIAGYEKNGDYIGAINLFIQMQVEGEKSDRHTLSSLL 421
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDV 270
S + + L+ G +IH + + P ALI MY++CG+I ++ +FY+ ++ K+V
Sbjct: 422 SVSSGIVDLQLGMQIHQLVSKTVIPDVP-LNNALITMYSRCGAIFEARTIFYEMKLQKEV 480
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
WNAMI G A HGY AL+L M V+ ITFI +L+AC+HAGLV+EG +F
Sbjct: 481 ISWNAMIGGYASHGYATEALELFKLMRSFKVQPTYITFISVLNACAHAGLVEEGRRIFES 540
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390
M D+GV ++EH+ +VD++GR L+ A++LI +M EP +++ GALL A +H ++E
Sbjct: 541 MVSDYGVEPRVEHFASLVDIVGRQGQLEEALDLINSMTIEPDKAVWGALLGASRVHNNVE 600
Query: 391 IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+ RVA K S ++ N+Y GQW+ A R+MM I K A S ++
Sbjct: 601 MA-RVAAEALMKLEPDSSVPYILLYNMYVDVGQWDNAAEIRSMMERNNIKKEAAISWVD 658
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 162/326 (49%), Gaps = 31/326 (9%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I++A +F+K+ ++ + WNSM+ + G+M A KL D MP +DV S+N++ISGY
Sbjct: 63 INEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMPERDVVSWNLIISGYVSC 122
Query: 121 -GK--IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
GK I R +FDK+P + VSWN++I Y G M++A +F M KN ++WN MV+
Sbjct: 123 RGKRFIEEGRNLFDKMPERCCVSWNTMISGYAKNGRMDEALGLFNTMPEKNSVSWNAMVS 182
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G+L++ + ++ F M + D ++++++S L+ RI + +NG +
Sbjct: 183 GFLQNGDVVRAIEFFKRMP----ERDVTSLSALVSGLIQNSELDQAERILLDYGNNGGSK 238
Query: 238 N--PHATTALIDMYAKCGSIEQSLEV-----FYKSQVK--------DVFCWNAMILGLAL 282
HA LI Y + G ++++ + FY Q K +V WN MI+
Sbjct: 239 EYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTMIMCYVK 298
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
G +A KL +M D D ++ ++S H ++E LF +M ++
Sbjct: 299 AGDVISARKLFDQMPDR----DSFSWNTMISGYVHVLDMEEASNLFHKMPSPDTLS---- 350
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMP 368
+ M+ ++ L+ A + E MP
Sbjct: 351 -WNLMISGYAQSGSLELAHDFFERMP 375
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 105/460 (22%), Positives = 193/460 (41%), Gaps = 106/460 (23%)
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
R I++ +F+KMPE+ ++WN+M+ +A G+MD A+ L + MP K+ S+N M+SG+
Sbjct: 126 RFIEEGRNLFDKMPERCCVSWNTMISGYAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFL 185
Query: 119 RIGKIHSARYIFDKVPAKDVVS-------------------------------------W 141
+ G + A F ++P +DV S +
Sbjct: 186 QNGDVVRAIEFFKRMPERDVTSLSALVSGLIQNSELDQAERILLDYGNNGGSKEYLVHAY 245
Query: 142 NSLILAYTNAGEMEKAGEMFKKM-------------LVKNVITWNTMVTGYLRSQLYIEV 188
N+LI Y G +++A +F K+ +NV++WNTM+ Y+++ I
Sbjct: 246 NTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGDVISA 305
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALID 247
LFD+M D + +++S ++ +E + + H + + L+ N +I
Sbjct: 306 RKLFDQMP----DRDSFSWNTMISGYVHVLDMEEASNLFHKMPSPDTLSWN-----LMIS 356
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
YA+ GS+E + + F + K++ WN++I G +G A+ L +M K+D T
Sbjct: 357 GYAQSGSLELAHDFFERMPQKNLVSWNSVIAGYEKNGDYIGAINLFIQMQVEGEKSDRHT 416
Query: 308 FI----------------------------------GLLSACSHAGLVQEGCELFSRMEK 333
L++ S G + E +F M+
Sbjct: 417 LSSLLSVSSGIVDLQLGMQIHQLVSKTVIPDVPLNNALITMYSRCGAIFEARTIFYEMK- 475
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVIHQDLE 390
+ +++ + M+ A+EL + M +PT ++L+AC +E
Sbjct: 476 ---LQKEVISWNAMIGGYASHGYATEALELFKLMRSFKVQPTYITFISVLNACAHAGLVE 532
Query: 391 IGDRVAKMVCAKSNYLSDGELMMFANL---YASCGQWEEA 427
G R+ + + S+Y + + FA+L GQ EEA
Sbjct: 533 EGRRIFESMV--SDYGVEPRVEHFASLVDIVGRQGQLEEA 570
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 57/273 (20%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
++ S N IS + R G+I+ AR +FDK+ ++ V+WNS+I Y GEM KA ++F +M
Sbjct: 46 NLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMP 105
Query: 166 VKNVITWNTMVTGYL--RSQLYIEV-VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
++V++WN +++GY+ R + +IE +LFD+M P+ C + ++ +
Sbjct: 106 ERDVVSWNLIISGYVSCRGKRFIEEGRNLFDKM------PE--------RCCVSWNTMIS 151
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G YAK G ++++L +F K+ WNAM+ G
Sbjct: 152 G-------------------------YAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQ 186
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG-CELFSRMEKDF----GV 337
+G A++ M + D+T + L +GL+Q + R+ D+ G
Sbjct: 187 NGDVVRAIEFFKRMPER-----DVTSLSALV----SGLIQNSELDQAERILLDYGNNGGS 237
Query: 338 TRKLEH-YGCMVDLLGRARLLDRAIELIEAMPF 369
L H Y ++ G+ +D A L + +PF
Sbjct: 238 KEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPF 270
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 222/358 (62%), Gaps = 5/358 (1%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y SAR +FD++P K++V+WNS++ AY +G++ A +F +M ++V+
Sbjct: 147 NTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVV 206
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDE-MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
TW++M+ GY++ Y + +++FD+ M+ G+ K + +T+ SV+ ACA+LG+L G +H Y
Sbjct: 207 TWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRY 266
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK--DVFCWNAMILGLALHGYGY 287
D L T+LIDMYAKCGSI + VFY++ VK D WNA+I GLA HG+
Sbjct: 267 ILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIR 326
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
+L+L +M +S + D+ITF+ LL+ACSH GLV+E F + K+ G K EHY CM
Sbjct: 327 ESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSL-KESGAEPKSEHYACM 385
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
VD+L RA L+ A + I MP +PT S+LGALL+ C+ H +LE+ + V K + + +
Sbjct: 386 VDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIELQPH-N 444
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
DG + AN+YA Q+ A R M G+ K AG S+++++G+ H+F+A H
Sbjct: 445 DGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHRFIAHDKTHF 502
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 146/326 (44%), Gaps = 46/326 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ D+ ++P L+K++ LS+ +G LH +K+G +++ L+ MYGS R
Sbjct: 99 MLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRD 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A K+F++MP K+++ WNS+LDA+A G + A + D M +DV +++ MI GY +
Sbjct: 159 QASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKR 218
Query: 121 GKIHSA----------------------------------------RYIFDKVPAKDVVS 140
G+ + A RYI D V+
Sbjct: 219 GEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVIL 278
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVK--NVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
SLI Y G + A +F + VK + + WN ++ G E + LF +M+
Sbjct: 279 QTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRES 338
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+ PD +T +L+AC++ G ++ ++G ++D+ ++ G ++ +
Sbjct: 339 KIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVKDA 398
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHG 284
+ + +K +LG L+G
Sbjct: 399 HDFISEMPIKPT----GSMLGALLNG 420
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 100/235 (42%), Gaps = 32/235 (13%)
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
KIH+ + VS A +++G+++ A + K+ WN ++ G+
Sbjct: 26 KIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSN 85
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN--- 238
S+ + + ++ +M + PD++T ++ + + L + + G +H +GL +
Sbjct: 86 SRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFI 145
Query: 239 ------------------------PHAT----TALIDMYAKCGSIEQSLEVFYKSQVKDV 270
PH +++D YAK G + + VF + +DV
Sbjct: 146 CNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDV 205
Query: 271 FCWNAMILGLALHGYGYAALKLLGE-MNDSCVKADDITFIGLLSACSHAGLVQEG 324
W++MI G G AL++ + M KA+++T + ++ AC+H G + G
Sbjct: 206 VTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRG 260
>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
Length = 557
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 145/402 (36%), Positives = 244/402 (60%), Gaps = 6/402 (1%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
LL+ + + + A ++F++MPE+D++ +NSML +A+ G + +A +L D MP +DV ++
Sbjct: 158 LLRSFLRMGLLPAARRLFDEMPERDLVTYNSMLSGYAAEGDIANARELFDGMPERDVVTW 217
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N M++GYA+ G + SA+ +FD +P +DVVSWNS++ Y G++E +F M ++ +
Sbjct: 218 NSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTV 277
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIH-- 227
+WN ++ Y + + + E ++LFD M A G KP+ T SVL+AC +LG LE G +H
Sbjct: 278 SWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWVHHL 337
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
V+ + L + TA++ MYAKCG + + E+F + V WN+MI+G LHGY
Sbjct: 338 VHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSE 397
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL+L EM + + ++ TFI +LS+C+H GLV EG F RM + + + K EH+GCM
Sbjct: 398 KALELFMEMEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEPKAEHFGCM 457
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYL 406
+DLLGRA LL + LI + + + ++ GAL+SA ++G+ + K++ K
Sbjct: 458 MDLLGRAGLLRDSENLINNLQAKVSPALWGALISASRTQDSSKLGEFIGTKLIEMKPTEF 517
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
S ++ +N+YA+ G+W++ + R +M + + K G S++
Sbjct: 518 S--SYVLLSNIYATEGRWDDVEKVRKVMKEKVVEKDVGMSLV 557
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 40/246 (16%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
NS+L + S G A +L+ +P D ++N ++ + R+G + +AR +FD++P +D+V
Sbjct: 125 NSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLV 184
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
++NS++ Y G++ A E+F M ++V+TWN+M+ GY + LFD M +
Sbjct: 185 TYNSMLSGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVRD 244
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V + +++D YA+ G IE +
Sbjct: 245 VV---------------------------------------SWNSMLDGYAQTGDIEMTR 265
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND-SCVKADDITFIGLLSACSHA 318
VF + WN ++ A + L L M K ++ TF+ +L+AC H
Sbjct: 266 MVFDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHL 325
Query: 319 GLVQEG 324
G ++ G
Sbjct: 326 GDLERG 331
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 42/216 (19%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V ++L Y ++ A ++F+ MP +D+++WNSMLD +A G ++ + D MP
Sbjct: 214 VVTWNSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDGMPR 273
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPA----------------------------- 135
+ S+N++++ YA++ H +FD + A
Sbjct: 274 RSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRW 333
Query: 136 -------------KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
DV+ +++ Y G M A E+F M ++V +WN+M+ GY
Sbjct: 334 VHHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLH 393
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+ ++LF EM+ +P+ T +LS+CA+ G
Sbjct: 394 GYSEKALELFMEMEKNGPQPNETTFICILSSCAHGG 429
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-- 102
V + TA++ MY + A ++F+ M E+ + +WNSM+ + G + A++L M
Sbjct: 349 VLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFMEMEK 408
Query: 103 --PLKDVTSFNIMISGYARIGKIHSARYIFDKV 133
P + T+F ++S A G + + FD++
Sbjct: 409 NGPQPNETTFICILSSCAHGGLVLEGWWCFDRM 441
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 166/510 (32%), Positives = 259/510 (50%), Gaps = 47/510 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + YSF L A L +G +H ++ + VY+ +AL+ MY
Sbjct: 142 MHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGR 201
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSF 110
++ A VF++M + ++WNS++ + G +D A+K+ D + L V S
Sbjct: 202 VEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSA 261
Query: 111 ------------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVS 140
N ++ YA+ +I+ AR IFD +P + VVS
Sbjct: 262 CATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVS 321
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
S++ Y A +++ A MF M+VK+VITWN ++ G ++ E + LF +K +V
Sbjct: 322 ETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESV 381
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA------SNPHATTALIDMYAKCGS 254
P + T ++L+ACANL L+ G + H + +G S+ +LIDMY KCGS
Sbjct: 382 WPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGS 441
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+E VF KD WNAMI+G A +G+G AL++ +M +S D +T IG+L A
Sbjct: 442 VENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCA 501
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
CSHAGL+ EG F M G+ +HY CMVDLLGRA L+ A LIE M +P
Sbjct: 502 CSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAI 561
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
+ G+LL+AC +H+++++G+ V K + + + + G ++ +N+YA W+ R R +M
Sbjct: 562 VWGSLLAACKVHRNIQLGEYVVKKL-LEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLM 620
Query: 435 NDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+VK G S IE+ G + F+ H
Sbjct: 621 RQRGVVKQPGCSWIEIQGELNVFMVKDKRH 650
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/467 (25%), Positives = 204/467 (43%), Gaps = 83/467 (17%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ F LL S+ +H IK+ F ++Q L+ +YG C+D A K+F
Sbjct: 18 DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++M E++I +WNS++ AF G +D A+ + + MP D S+N MISG+ + G+ A
Sbjct: 78 DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137
Query: 129 IFDKVPA---------------------------------------KDVVSWNSLILAYT 149
F ++ DV ++L+ Y+
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G +E A +F +M V++ ++WN+++T Y ++ E + +F EM V+PD +T+ S
Sbjct: 198 KCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLAS 257
Query: 210 VLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
V+SACA + +++ G +IH + ++ AL+DMYAKC I ++ +F ++
Sbjct: 258 VVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIR 317
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
V +M+ G A + +K+ M + + D IT+ L++ C+ G +E LF
Sbjct: 318 SVVSETSMVSGYA----KASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILF 373
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQD 388
RLL R PT G LL+AC D
Sbjct: 374 --------------------------RLLKRE-------SVWPTHYTFGNLLNACANLAD 400
Query: 389 LEIGDRVAKMVCA---KSNYLSDGELMM---FANLYASCGQWEEANR 429
L++G + V + Y D ++ + ++Y CG E R
Sbjct: 401 LQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCR 447
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/472 (32%), Positives = 256/472 (54%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G +N++F +LKA L + G +H +KT + +YV LL++Y
Sbjct: 138 MRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGD 197
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
DDA++ F MP+ D+I W+ M+ FA GQ + A+++ M + + +F+ ++
Sbjct: 198 NDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQA 257
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A I + ++ I + DV N+L+ Y G +E++ E+F+ + +N ++W
Sbjct: 258 SADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSW 317
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NT++ Y++ + LF M V+ +T +S+L ACA L +LE G ++H
Sbjct: 318 NTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAK 377
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ ALIDMYAKCGSI+ + +F ++D WNA+I G ++HG G A+K+
Sbjct: 378 TIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKM 437
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M ++ K D++TF+G+LSACS+ G + EG + F+ M++D+G+ +EHY CMV L+G
Sbjct: 438 FNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMG 497
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R+ LD+A++ IE +PFEP+ I ALL ACVIH D+E+G R++ + + +
Sbjct: 498 RSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELG-RISAQRVLELEPRDEASHV 556
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N+YA +W R M G+ K G S IE G+ H F H
Sbjct: 557 LLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSH 608
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 165/333 (49%), Gaps = 12/333 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + + F +LK + + +G ++HG +K G+ + ++ TAL+ Y C+ A
Sbjct: 41 GHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMA 100
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR----- 119
+VF+++ KD+++W M+ ++A A++ M + N +G +
Sbjct: 101 REVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGL 160
Query: 120 ----IGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
GK +H + + +D+ L+ YT G+ + A F M +VI W+
Sbjct: 161 QNFDAGKTVHCS--VLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSF 218
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M++ + +S + +++F +M+ V P+ T +SVL A A++ SL+ IH +A G
Sbjct: 219 MISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAG 278
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L+++ + AL+ YAKCG IEQS+E+F ++ WN +I+ G G AL L
Sbjct: 279 LSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFS 338
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
M V+A ++T+ +L AC+ ++ G ++
Sbjct: 339 NMLRYQVQATEVTYSSILRACATLAALELGLQV 371
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/415 (22%), Positives = 181/415 (43%), Gaps = 51/415 (12%)
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI--------DLMPLKDVTSFNIMIS-GY 117
VF++MPE++ +++ +++ +A + A +L +L P T +++S +
Sbjct: 2 VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61
Query: 118 ARIGKI-HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
A +G+I H + + +LI AY+ +G + A E+F ++ K++++W M+
Sbjct: 62 AELGRIVHGC--VLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
Y + + E ++ F +M+ KP+ T VL AC L + + G +H
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE 179
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ + L+++Y +CG + + F DV W+ MI A G AL++ +M
Sbjct: 180 RDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQM 239
Query: 297 NDSCVKADDITFIGLLSACS-----------HAGLVQEGCE--------LFSRMEKDFGV 337
+ V + TF +L A + H ++ G L + K +
Sbjct: 240 RRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCI 299
Query: 338 TRKLEHYGCMVD---------LLGRARLLD--RAIELIEAM---PFEPTESILGALLSAC 383
+ +E + + D ++ +L D RA+ L M + TE ++L AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSD---GELMMFANLYASCGQWEEANRWRNMMN 435
LE+G +V + AK+ Y D G ++ ++YA CG ++A +M++
Sbjct: 360 ATLAALELGLQV-HCLTAKTIYGQDVAVGNALI--DMYAKCGSIKDARFMFDMLD 411
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 256/497 (51%), Gaps = 42/497 (8%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ SF LKA G + +G+ +H K GF ++VQ L++ Y C+ A ++F
Sbjct: 151 DSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMF 210
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLI------DLMP------------------- 103
++ KD++ W +M++ +A +D A+ L D+ P
Sbjct: 211 DESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSE 270
Query: 104 ----------LKDVTS----FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
KD+T N M+ Y + G + +AR IF+ + +DV SW SL+ Y
Sbjct: 271 MGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYA 330
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVT 208
G++ A ++F +M +N+++WN M+ GY ++ +E ++LF M + P T+
Sbjct: 331 KNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLV 390
Query: 209 SVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
VLSA LG LE G IH + G+ + A++DMYAKCGSI+ + ++F+
Sbjct: 391 CVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPE 450
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
K++ WN+MI A +G+ AL L +M S +K D ITFIG+LSACS+ G V EG
Sbjct: 451 KNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAH 510
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F ME FGV K EHY CMVDLL R LL A ELI MP E +E GALL AC H
Sbjct: 511 FESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHG 570
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++E+ ++A + + G + AN+ A +W++ R MM + G+ K G S+
Sbjct: 571 NVEMA-KLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSL 629
Query: 448 IEVNGSYHKFLAGGIGH 464
IE+ G +H+FL H
Sbjct: 630 IEIEGKFHEFLVADTSH 646
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 1/221 (0%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A +++G++ A +F + + N WNTM+ GY ++ F +M + D +
Sbjct: 95 ALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGS 154
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
L AC G +H G S+ LI Y + G + + ++F +S
Sbjct: 155 FVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESS 214
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
VKDV W MI G A + + A+ L M S VK +++T I LLSACS G + G
Sbjct: 215 VKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKT 274
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
L + + +T L M+D+ + L A E+ M
Sbjct: 275 LHEHIRRK-DITCSLNLLNAMLDMYVKCGCLTTAREIFNNM 314
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 160/484 (33%), Positives = 249/484 (51%), Gaps = 31/484 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + ++FP +K+ LS G LH KTG +VQT+L+ MYG
Sbjct: 1 MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60
Query: 61 IDDAFKVFEKMPE--KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
ID+A K+F++ P+ K + +NS+L +A ++ + L ++ + I+G
Sbjct: 61 IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVL-----FCEMRELGVEINGVT 115
Query: 119 RIGKIHSARYIFDKVPAK------------------DVVSWNSLILAYTNAGEMEKAGEM 160
+G + +P D N L+ Y +GE++ ++
Sbjct: 116 MLGLVQPC-----GIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKL 170
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
F +M K +ITWN M+ GY ++ L V++L+ EM++ PD LT+ VLS+CA+LG+L
Sbjct: 171 FDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGAL 230
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
G + G +SNP AL++MYA+CG+++++ ++F VK V W A+I G
Sbjct: 231 SVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGY 290
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
+HG G A+ L EM +K D F+ +LSACSHAGL +G + F ME+ +G+
Sbjct: 291 GMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPG 350
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC 400
EHY CMVDLLGRA L+ A ELIE+M ++ GALL AC IH+++E+ + + V
Sbjct: 351 AEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQV- 409
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ + G ++ +N+Y G E R R +M + K G S +E G H F AG
Sbjct: 410 IELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAG 469
Query: 461 GIGH 464
H
Sbjct: 470 DRNH 473
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 214/347 (61%), Gaps = 4/347 (1%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ DV ++ M++G+A G + AR+ FD +P K+VVSWN+++ AY AG + KA ++F +
Sbjct: 136 VADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDR 195
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +N TW +M+TG L+S E + +F +M A V P+ + S +SAC L +E G
Sbjct: 196 MPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSACTQLRWMEHG 255
Query: 224 ARIHVYATD--NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
+H YA NG S AT A++DMY KCGSI ++ VF V++++ WN+MI GLA
Sbjct: 256 TWVHGYAERELNGAMSAVLAT-AIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLA 314
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
++G AL L +M + V+ +DITFIGLLSACSH+GLV EG LF +M FG+
Sbjct: 315 MNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVP 374
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401
EHYG MVDLLGR+ + A++ +++MP EP + GAL AC IH ++E+G+ VAK +
Sbjct: 375 EHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLI- 433
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+ ++ +N+YA+ +W++ R ++ D + K G++++
Sbjct: 434 ELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIV 480
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 126/284 (44%), Gaps = 46/284 (16%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V T ++ + + ++ A F+ MPEK++++WN+ML A+A G + A KL D MP
Sbjct: 139 VVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPS 198
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV----------------------SW- 141
++ ++ MI+G + A +F + A VV +W
Sbjct: 199 RNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSACTQLRWMEHGTWV 258
Query: 142 -----------------NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+++ Y G + A +F M V+N+ +WN+M+ G +
Sbjct: 259 HGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGS 318
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHAT 242
+ + LF +M+ V+P+ +T +LSAC++ G ++ G R Y N G+ P
Sbjct: 319 ERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEG-RWLFYKMVNHFGIQPVPEHY 377
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVF--CWNAMILGLALHG 284
++D+ + G + ++++ F KS + W A+ +HG
Sbjct: 378 GLMVDLLGRSGHVREAVD-FVKSMPVEPHPGLWGALAGACKIHG 420
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 251/435 (57%), Gaps = 22/435 (5%)
Query: 51 LLKMYGSLRCIDD-----AFKVFEKMPEKDIIAWNSMLDAF----------ASCGQMDHA 95
+++ Y S+ DD A ++++M KDI+ N + F + GQ H
Sbjct: 92 MIRAYISMESGDDTHFCKALMLYKQMFCKDIVP-NCLTFPFLLKGCTQWLDGATGQAIHT 150
Query: 96 MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEME 155
++I LKDV N +IS Y G + +AR +FD++ DVV+WNS+++ G ++
Sbjct: 151 -QVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLD 209
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN---VKPDYLTVTSVLS 212
A ++F+KM +N+ITWN+++TG + E ++LF EM+ + VKPD +T+ SVLS
Sbjct: 210 MAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLS 269
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
ACA LG+++ G +H Y NG+ + TAL++MY KCG ++++ E+F + KD
Sbjct: 270 ACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASA 329
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
W MI ALHG G+ A EM + VK + +TF+GLLSAC+H+GLV++G F M+
Sbjct: 330 WTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMK 389
Query: 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG 392
+ + + ++ HY CMVD+L RARL D + LI +MP +P + GALL C +H ++E+G
Sbjct: 390 RVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHGNVELG 449
Query: 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI-VKTAGSSVIEVN 451
++V + + + + + ++YA G ++ A R RN+M + I K G S+IE+N
Sbjct: 450 EKVVHHLIDLEPH-NHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIPGCSMIEIN 508
Query: 452 GSYHKFLAGGIGHLS 466
G +F AGG L
Sbjct: 509 GEVQEFSAGGSSELP 523
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 145/318 (45%), Gaps = 46/318 (14%)
Query: 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM 71
+FP LLK G +H Q IK GF VYV +L+ +Y + + +A KVF++M
Sbjct: 128 TFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEM 187
Query: 72 PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD 131
D++ WNSM+ G +D AM L M +++ ++N +I+G A+ G + +F
Sbjct: 188 LVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFH 247
Query: 132 KV---------PAK---------------------------------DVVSWNSLILAYT 149
++ P K DVV +L+ Y
Sbjct: 248 EMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYG 307
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
G+++KA E+F++M K+ W M++ + L + + F EM+ VKP+++T
Sbjct: 308 KCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVG 367
Query: 210 VLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV- 267
+LSACA+ G +E G V + + ++D+ ++ ++S E+ +S
Sbjct: 368 LLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDES-EILIRSMPM 426
Query: 268 -KDVFCWNAMILGLALHG 284
DV+ W A++ G +HG
Sbjct: 427 KPDVYVWGALLGGCQMHG 444
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 104/261 (39%), Gaps = 36/261 (13%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D + +L A L + G +HG + G V + TAL+ MYG + AF
Sbjct: 257 VKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAF 316
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISGYARIG 121
++FE+MPEKD AW M+ FA G A M V +F ++S A G
Sbjct: 317 EIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSG 376
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
+ R+ FD + K V S + Y MV R
Sbjct: 377 LVEQGRWCFDVM--KRVYSIEPQVYHYA------------------------CMVDILSR 410
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
++L+ E L M +KPD ++L C G++E G ++ + D L + HA
Sbjct: 411 ARLFDESEILIRSMP---MKPDVYVWGALLGGCQMHGNVELGEKVVHHLID--LEPHNHA 465
Query: 242 -TTALIDMYAKCGSIEQSLEV 261
D+YAK G + + +
Sbjct: 466 FYVNWCDIYAKAGMFDAAKRI 486
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 225/363 (61%), Gaps = 6/363 (1%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D+ N +I Y + G + +FD++ +DV+SW SLI+AY G ME A E+F +
Sbjct: 174 DLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLP 233
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+K+++ W MVTGY ++ E +++F+ M+A VK D +T+ V+SACA LG+ +
Sbjct: 234 MKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANW 293
Query: 226 IHVYATDNGLA--SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+ A +G SN +ALIDMYAKCGS+E + +VF + + ++V+ +++MI+G A+H
Sbjct: 294 VRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMH 353
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G AA++L EM + +K + +TFIG+L+ACSHAG+V++G +LF+ ME+ GV +H
Sbjct: 354 GLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDH 413
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA-K 402
Y CMVDLLGRA L+ A+ L++ MP P + GALL AC IH + ++ A + +
Sbjct: 414 YACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELE 473
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE-VNGSYHKFLAGG 461
N + G ++ +N+YAS G+W++ ++ R +M G+ K G S +E G H+F AG
Sbjct: 474 PNGI--GNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGD 531
Query: 462 IGH 464
+ H
Sbjct: 532 MSH 534
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 161/328 (49%), Gaps = 44/328 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLR 59
M+ G+ +++F LLKA +G +H QTI G F +YV L+ MY
Sbjct: 130 MRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCG 189
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
C+ +VF++M ++D+I+W S++ A+A G M+ A +L D +P+KD+ ++ M++GYA+
Sbjct: 190 CLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQ 249
Query: 120 IGKIHSARYIFDKV-----------------------------------------PAKDV 138
+ A +F+++ P +V
Sbjct: 250 NARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNV 309
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
V ++LI Y G +E A ++F++M +NV ++++M+ G+ L ++LFDEM
Sbjct: 310 VVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKT 369
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQ 257
+KP+ +T VL+AC++ G +E G ++ + +G+A + ++D+ + G +E+
Sbjct: 370 EIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEE 429
Query: 258 SLEVFYKSQVKDV-FCWNAMILGLALHG 284
+L + + W A++ +HG
Sbjct: 430 ALNLVKMMPMNPHGGVWGALLGACRIHG 457
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 106/241 (43%), Gaps = 33/241 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F+++ N W ++ GY ++E V L++ M+ + P T T++L AC+
Sbjct: 95 VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154
Query: 220 LETGARIHVYAT-DNGLASNPHATTALIDMYAKC-------------------------- 252
+ G ++H G S+ + LIDMY KC
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIV 214
Query: 253 -----GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
G++E + E+F +KD+ W AM+ G A + AL++ M + VK D++T
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVT 274
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
+G++SAC+ G + + E+ FG T + ++D+ + ++ A ++ E
Sbjct: 275 LVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFER 334
Query: 367 M 367
M
Sbjct: 335 M 335
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 210/353 (59%), Gaps = 3/353 (0%)
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+G++ A + A D ++N+LI A+ AG + A +F +M +N ++W+ MV GY
Sbjct: 141 LGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGY 200
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+++ E + +F +M+A V+PD + VL+ACA LG+LE G +H Y N +
Sbjct: 201 VQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTV 260
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TAL+DMYAKCG ++ +EVF + K+V W MI GLA+HG G +L L +M S
Sbjct: 261 FLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESS 320
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
VK DDI FIG L AC+H GLV +G ELF+ M ++G+ K+EHYGCMVDLL R LL
Sbjct: 321 GVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSE 380
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A +++E MP +P I GAL++ C H+++E+ + V K S G ++ N+Y+
Sbjct: 381 ARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKS-GAYVLLGNIYS 439
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH--LSNLLT 470
+ G+ A RN+M + G+ KT G S +E+ G H+F+ G + H + ++LT
Sbjct: 440 ASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILT 492
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 143/325 (44%), Gaps = 46/325 (14%)
Query: 5 GVHADNYSFPLLLKA----AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSL-- 58
G+ ++ P LLK+ + + + L +H ++ G G + V AL++++ L
Sbjct: 83 GLFPTPHTLPSLLKSLALSPAVPGARRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLG 142
Query: 59 RCID------------------------------DAFKVFEKMPEKDIIAWNSMLDAFAS 88
R D DA +F++MPE++ ++W++M++ +
Sbjct: 143 RLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQ 202
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGY----ARIGKIHSARYIFDKVPAKD----VVS 140
G A+ + M + V + ++ G A++G + +++ + A + V
Sbjct: 203 AGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFL 262
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+L+ Y GE++ E+F+ M KNV+ W TM+ G + + LF +M++ V
Sbjct: 263 GTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGV 322
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSL 259
KPD + L AC + G ++ G + +N G+ ++D+ A+ G + ++
Sbjct: 323 KPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEAR 382
Query: 260 EVFYKSQVK-DVFCWNAMILGLALH 283
++ K +K D W A++ G H
Sbjct: 383 DMVEKMPMKPDALIWGALMAGCRFH 407
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 35/219 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D+ +L A L + G +HG V++ TAL+ MY
Sbjct: 216 MQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGE 275
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +VFE M +K+++AW +M+ A G+ ++ L M V +I G
Sbjct: 276 VQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGA--- 332
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML----VKNVIT-WNTM 175
+ A T+ G ++K E+F M+ +K I + M
Sbjct: 333 ------------------------LCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCM 368
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
V R+ L E D+ ++M +KPD L ++++ C
Sbjct: 369 VDLLARNGLLSEARDMVEKMP---MKPDALIWGALMAGC 404
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/472 (33%), Positives = 251/472 (53%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V ++ +L A G L++ G +H +++ + V V TAL KMY
Sbjct: 221 MLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGA 280
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
DA +VFE + +D+IAWN+M+ F GQ++ A ++++ D ++ ++S
Sbjct: 281 FKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSA 340
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
AR G + + I + +VS N+LI Y+ AG M+ A ++F +M ++V++W
Sbjct: 341 CARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSW 400
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
T++ Y +E F +M VK + +T VL AC+N +L+ G IH
Sbjct: 401 TTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVK 460
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
GL ++ T AL+ MY KCGS+E ++ VF ++DV WN +I GL +G G AL+
Sbjct: 461 AGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQR 520
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M ++ + TF+ +LSAC LV+EG F+ M KD+G+ +HY CMVD+L
Sbjct: 521 YEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILA 580
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L A ++I +P +P+ ++ GALL+AC IH ++EIG+R A+ C K + G +
Sbjct: 581 RAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEH-CLKLEPQNAGLYV 639
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +YA+ G W + + R M + G+ K G S IE+ G H F+A H
Sbjct: 640 SLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSH 691
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 177/376 (47%), Gaps = 9/376 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ G D+Y + LL++ +G +H ++ G +VY+ LLK+Y
Sbjct: 19 LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+++A ++F+K K +++WN M+ +A G A L LM + D +F ++S
Sbjct: 79 VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ ++ R I +V A D N+LI Y G + A +F M ++ ++W
Sbjct: 139 CSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 198
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
T+ Y S E + + M V+P +T +VLSAC +L +LE G +IH + +
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVE 258
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ S+ +TAL MY KCG+ + + EVF +DV WN MI G G A
Sbjct: 259 SEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGT 318
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M + V D T+ +LSAC+ G + G E+ +R KD G+ + ++++
Sbjct: 319 FHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNALINMYS 377
Query: 353 RARLLDRAIELIEAMP 368
+A + A ++ + MP
Sbjct: 378 KAGSMKDARQVFDRMP 393
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 171/356 (48%), Gaps = 17/356 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ + D ++F +L A + G +H + ++ G V AL+ MY
Sbjct: 120 MQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGS 179
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMK-----LIDLMPLKDVTSFNIM-- 113
+ DA +VF+ M +D ++W ++ A+A G + ++K L + + +T N++
Sbjct: 180 VRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSA 239
Query: 114 ---ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
++ + +IH+ +I + DV +L Y G + A E+F+ + ++VI
Sbjct: 240 CGSLAALEKGKQIHA--HIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVI 297
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WNTM+ G++ S E F M V PD T T+VLSACA G L G IH A
Sbjct: 298 AWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARA 357
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+GL S+ ALI+MY+K GS++ + +VF + +DV W ++ A +
Sbjct: 358 AKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESF 417
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK-----DFGVTRKL 341
+M VKA+ IT++ +L ACS+ ++ G E+ + + K D VT L
Sbjct: 418 TTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNAL 473
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 207/349 (59%), Gaps = 2/349 (0%)
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
YAR G +AR +FD++P VV +++ Y G ++ A E+F M K+ I WN M+
Sbjct: 175 YARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMI 234
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY + E + LF M V PD + + LSA A LG+ E+G +H Y ++
Sbjct: 235 DGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRV 294
Query: 237 S-NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
N TALIDMY KCGS+E ++ VF KD+ WNAMI G A+HG AL++ +
Sbjct: 295 QLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQ 354
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+ + DITFIGLL+ACSH+GLV EG + F ME+++ + K+EHYGCMVDLLGRA
Sbjct: 355 LRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAG 414
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L++ A L+++M P + +LL+AC +H+++ +G ++A + A + G ++ +
Sbjct: 415 LIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVA-GGLANSGMYILLS 473
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA+ G WEE R R+MM +GI K G S IEV ++F+AG + H
Sbjct: 474 NIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSH 522
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 132/317 (41%), Gaps = 49/317 (15%)
Query: 16 LLKAAGILSSS-------CIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
L+ + LSSS +G LH K G YV TALL MY D A +F
Sbjct: 129 LIPTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALF 188
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----------- 117
++MP+ ++ +ML +A G +D A +L D MP KD +N MI GY
Sbjct: 189 DEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALR 248
Query: 118 ------------------------ARIGKIHSARYIFDKVPAKDVVSWN-----SLILAY 148
A++G S R++ V V N +LI Y
Sbjct: 249 LFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMY 308
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G +E A +F + K+++ WN M+ GY + +++F ++++ + P +T
Sbjct: 309 CKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFI 368
Query: 209 SVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+L+AC++ G ++ G + + + ++D+ + G IE++ + +
Sbjct: 369 GLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTI 428
Query: 268 -KDVFCWNAMILGLALH 283
D W +++ LH
Sbjct: 429 APDTVMWVSLLAACRLH 445
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 207/349 (59%), Gaps = 2/349 (0%)
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
YAR G +AR +FD++P VV +++ Y G ++ A E+F M K+ I WN M+
Sbjct: 174 YARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMI 233
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY + E + LF M V PD + + LSA A LG+ E+G +H Y ++
Sbjct: 234 DGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRV 293
Query: 237 S-NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
N TALIDMY KCGS+E ++ VF KD+ WNAMI G A+HG AL++ +
Sbjct: 294 QLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQ 353
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+ + DITFIGLL+ACSH+GLV EG + F ME+++ + K+EHYGCMVDLLGRA
Sbjct: 354 LRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAG 413
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L++ A L+++M P + +LL+AC +H+++ +G ++A + A + G ++ +
Sbjct: 414 LIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVA-GGLANSGMYILLS 472
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA+ G WEE R R+MM +GI K G S IEV ++F+AG + H
Sbjct: 473 NIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSH 521
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 132/317 (41%), Gaps = 49/317 (15%)
Query: 16 LLKAAGILSSS-------CIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
L+ + LSSS +G LH K G YV TALL MY D A +F
Sbjct: 128 LIPTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALF 187
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----------- 117
++MP+ ++ +ML +A G +D A +L D MP KD +N MI GY
Sbjct: 188 DEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALR 247
Query: 118 ------------------------ARIGKIHSARYIFDKVPAKDVVSWN-----SLILAY 148
A++G S R++ V V N +LI Y
Sbjct: 248 LFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMY 307
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G +E A +F + K+++ WN M+ GY + +++F ++++ + P +T
Sbjct: 308 CKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFI 367
Query: 209 SVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+L+AC++ G ++ G + + + ++D+ + G IE++ + +
Sbjct: 368 GLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTI 427
Query: 268 -KDVFCWNAMILGLALH 283
D W +++ LH
Sbjct: 428 APDTVMWVSLLAACRLH 444
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 256/488 (52%), Gaps = 44/488 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + +F L K+ +S G M+ ++K GF +++V AL+ MY + A
Sbjct: 108 GIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMA 167
Query: 65 FKVFEKMPEKDIIAWNSM-------------LDAFASCGQMDHAMKLIDLMPLKDVTSF- 110
KVF+ M E+D+++WNS+ LD F ++ + +M T F
Sbjct: 168 QKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFL 227
Query: 111 -------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
N +I Y R G I A +F ++ K++VSWN++I
Sbjct: 228 SEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMI 287
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
+ Y G + A ++F +M ++VI+W +M+ GY ++ + E V LF EM VKPD +
Sbjct: 288 MGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEI 347
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
TV + LSACA+LGSL+ G +H Y + + S+ +LIDMY KCG +E++L+VF
Sbjct: 348 TVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDM 407
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ +D W ++I GLA++G+ +AL + +M + TF+G+L AC+H GLV +G
Sbjct: 408 KTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGV 467
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
E F ME + + +++HYGC+VDLL R+ LD A I+ MP P I LLSAC +
Sbjct: 468 EHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKL 527
Query: 386 HQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
H +L + + V+K +V SN +G ++ ++ YA +W++ + R +M T + K
Sbjct: 528 HGNLVLAEIVSKKLLVLDPSN---NGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPC 584
Query: 444 GSSVIEVN 451
S IEV
Sbjct: 585 AYSSIEVR 592
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 146/326 (44%), Gaps = 43/326 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + V AD+ + + A LS +G L + G +Y+ L+ MYG
Sbjct: 205 MQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGM 264
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
ID A +VF +M EK+I++WN+M+ +A G + A KL + MP +DV S+ MI GY
Sbjct: 265 IDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLA 324
Query: 118 --------------------------------ARIGKIHSARYIFDKVPAKDVVS----W 141
A +G + + + D + D+ S
Sbjct: 325 KQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVG 384
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSLI Y G +EKA ++F M ++ ++W ++++G + +++FD+M +
Sbjct: 385 NSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGIC 444
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNG--LASNPHATTALIDMYAKCGSIEQSL 259
P + T VL ACA++G ++ G H + +N LA ++D+ + G ++ +
Sbjct: 445 PTHGTFVGVLLACAHVGLVDKGVE-HFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAY 503
Query: 260 EVFYKSQ-VKDVFCWNAMILGLALHG 284
K V DV W ++ LHG
Sbjct: 504 NFIKKMPIVPDVVIWRILLSACKLHG 529
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 1/207 (0%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+ KA +F ++ ++ WN M+ G +S + + ++ M ++ +LT + +
Sbjct: 63 LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKS 122
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
CA + + G + V++ G S + ALI MY G + + +VF +DV W
Sbjct: 123 CARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSW 182
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
N++I G L L EM V+AD +T + +SA + G L ++
Sbjct: 183 NSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYID- 241
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ GV L ++D+ GR ++D A
Sbjct: 242 EHGVVVDLYLGNTLIDMYGRRGMIDFA 268
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/478 (34%), Positives = 255/478 (53%), Gaps = 18/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G ++ S + + A L G +H + +K GF YV +AL+ MYG C
Sbjct: 199 MESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDC 258
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PLKDVTSFNIMI 114
++ A +VF+KMP K ++AWNSM+ + + G +++++ M P + + +M
Sbjct: 259 LEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMA 318
Query: 115 SGYARI---GK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+R GK IH Y+ V D+ SLI Y GE A +F K
Sbjct: 319 CSRSRNLLHGKFIHG--YVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAE 376
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN M++ Y+ + + V+++D+M + VKPD +T TSVL AC+ L +LE G +IH+
Sbjct: 377 SWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSI 436
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+++ L ++ +AL+DMY+KCG+ +++ +F KDV W MI HG AL
Sbjct: 437 SESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREAL 496
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
EM +K D +T + +LSAC HAGL+ EG + FS+M +G+ +EHY CM+D+
Sbjct: 497 YQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDI 556
Query: 351 LGRARLLDRAIELIEAMPFEPTES--ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
LGRA L A E+I+ P E +++ +L L SAC +H + +GDR+A+++ NY D
Sbjct: 557 LGRAGRLLEAYEIIQQTP-ETSDNAELLSTLFSACCLHLEHSLGDRIARLLV--ENYPDD 613
Query: 409 GE-LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
M+ NLYAS W+ A R R M + G+ K G S IE++ F A HL
Sbjct: 614 ASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHL 671
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 175/340 (51%), Gaps = 13/340 (3%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+++FP ++KA G L +G M+H +K+G+ V V ++L+ MY +++ +V
Sbjct: 105 PDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQV 164
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKI 123
F++MPE+D+ +WN+++ F G+ + A++L M + S + IS +R+ +
Sbjct: 165 FDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWL 224
Query: 124 HSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ I K K D ++L+ Y +E A E+F+KM K+++ WN+M+ GY
Sbjct: 225 ERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGY 284
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ V++ + M +P T+TS+L AC+ +L G IH Y + + ++
Sbjct: 285 VAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADI 344
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ +LID+Y KCG + VF K+Q WN MI G + A+++ +M
Sbjct: 345 YVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSV 404
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELF-----SRMEKD 334
VK D +TF +L ACS +++G ++ SR+E D
Sbjct: 405 GVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETD 444
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 107/460 (23%), Positives = 196/460 (42%), Gaps = 57/460 (12%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP-EKDIIAWNSMLDAFASC 89
++H + + G V + +L+ +Y + + A VFE D+ WNS++ ++
Sbjct: 25 LVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKN 84
Query: 90 GQMDHAMKLIDLM-----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----DVVS 140
+++ + + D +F +I Y +G+ R I V DVV
Sbjct: 85 SMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVV 144
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+SL+ Y E + ++F +M ++V +WNT+++ + +S + ++LF M++
Sbjct: 145 ASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGF 204
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+P+ +++T +SAC+ L LE G IH G + + +AL+DMY KC +E + E
Sbjct: 205 EPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVARE 264
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF K K + WN+MI G G + +++L M + T +L ACS +
Sbjct: 265 VFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRN 324
Query: 321 VQEG-------------------CEL----------------FSRMEKDFGVTRKLEHYG 345
+ G C L FS+ +KD E +
Sbjct: 325 LLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVA-----ESWN 379
Query: 346 CMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAK 402
M+ +A+E+ + M +P ++L AC LE G ++ +
Sbjct: 380 VMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSI--S 437
Query: 403 SNYLSDGELMMFA--NLYASCGQWEEANRWRNMMNDTGIV 440
+ L EL++ A ++Y+ CG +EA R N + +V
Sbjct: 438 ESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVV 477
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 168/507 (33%), Positives = 263/507 (51%), Gaps = 52/507 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLML---HGQTIKTGFCGHVYVQTALLKMYGS 57
+QE G+ D P+ L AA + S L + H + G V+V AL+ YG
Sbjct: 155 LQERGIKPD---MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGK 211
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG----QMD------------HAMKLIDL 101
+C++ A +VF+ + +D+++W S+ + CG MD + M + +
Sbjct: 212 CKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSI 271
Query: 102 MP----LKDVTS------FNI-------------MISGYARIGKIHSARYIFDKVPAKDV 138
+P LKD+ S F + ++S YA+ + AR +FD +P +DV
Sbjct: 272 LPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDV 331
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNV----ITWNTMVTGYLRSQLYIEVVDLFDE 194
VSWN ++ AY E EK +F KM V TWN ++ G + + E V++F +
Sbjct: 332 VSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRK 391
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M+ KP+ +T++S+L AC+ +L G IH Y + + +TTAL+ MYAKCG
Sbjct: 392 MQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGD 451
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ S VF + KDV WN MI+ A+HG G AL L +M S V+ + +TF G+LS
Sbjct: 452 LNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSG 511
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
CSH+ LV+EG ++F+ M +D V HY C+VD+ RA L+ A + I+ MP EPT S
Sbjct: 512 CSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTAS 571
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCA-KSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
GALL+AC +++++E+ AK + + N + G + N+ + W EA++ R +
Sbjct: 572 AWGALLAACRVYKNVELAKISAKKLFEIEPN--NPGNYVSLFNILVTAKMWSEASQVRIL 629
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLAG 460
M + GI KT G S ++V H F+ G
Sbjct: 630 MKERGITKTPGCSWLQVGNKVHTFVVG 656
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI N G+ +A ++F + + T +T+++ L E + ++ ++ +KPD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ ACA G +H AT G+ S+ ALI Y KC +E + VF
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
V+DV W ++ G+ + + EM S VK + +T +L AC+ ++
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 283
Query: 324 GCEL 327
G E+
Sbjct: 284 GKEI 287
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/477 (32%), Positives = 258/477 (54%), Gaps = 49/477 (10%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA------- 85
H Q I T H LLK+ + + A K+F+++P+ D+ +N+M+ A
Sbjct: 36 HAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHS 94
Query: 86 ---------------------------FASCG-----QMDHAMKL--IDLMPLKDVTSFN 111
F++CG Q +++ + + +V N
Sbjct: 95 CHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVN 154
Query: 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+I Y + G + ++ +F +D+ SWN+LI AY +G M A E+F M ++V++
Sbjct: 155 ALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVS 214
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W+T++ GY++ ++E +D F +M KP+ T+ S L+AC+NL +L+ G IH Y
Sbjct: 215 WSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIG 274
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILGLALHGYGYAAL 290
+ N ++IDMYAKCG IE + VF++ +VK V+ WNAMI G A+HG A+
Sbjct: 275 KGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAI 334
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ +M + + +TFI LL+ACSH +V+EG F M D+ +T ++EHYGCMVDL
Sbjct: 335 NVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDL 394
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA-KSNYLSDG 409
L R+ LL A ++I +MP P +I GALL+AC I++D+E G R+ +++ N++ G
Sbjct: 395 LSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHI--G 452
Query: 410 ELMMFANLYASCGQWEEAN--RWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+Y++ G+W EA R +N ++ K G S IE+ G++H+FL G H
Sbjct: 453 CHVLLSNIYSTSGRWNEARILREKNEISRDR-KKIPGCSSIELKGTFHQFLVGDQSH 508
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 144/318 (45%), Gaps = 42/318 (13%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
Q+LG+ + YSF A G G + +K G +V+V AL+ MYG +
Sbjct: 107 QDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLV 166
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
++ KVF+ ++D+ +WN+++ A+ G M A +L D M +DV S++ +I+GY ++G
Sbjct: 167 GESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVG 226
Query: 122 KIHSARYIFDKV----P------------------AKDVVSW-----------------N 142
A F K+ P A D W
Sbjct: 227 CFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLA 286
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKN-VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S+I Y GE+E A +F + VK V WN M+ G+ + E +++F++MK +
Sbjct: 287 SIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKIS 346
Query: 202 PDYLTVTSVLSACANLGSLETGA-RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T ++L+AC++ +E G + +D + ++D+ ++ G ++++ +
Sbjct: 347 PNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAED 406
Query: 261 VFYK-SQVKDVFCWNAMI 277
+ DV W A++
Sbjct: 407 MISSMPMAPDVAIWGALL 424
>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/478 (32%), Positives = 247/478 (51%), Gaps = 18/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D YSF +LK + +G +H +K G+ G+V+ +ALL MY
Sbjct: 91 MKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCER 150
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DAF+VF+ + ++ + WN+++ +A G A L+D M L+ V + + +
Sbjct: 151 VEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTL 210
Query: 121 GKIHSARYIFDKVPAK--------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK---NV 169
+ +V AK D N++I AY+ G +E A +F + +
Sbjct: 211 LDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDH 270
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++WN+++TG+ +S L + + F+ M++ V D+ ++VL +C++L +L+ G ++HV
Sbjct: 271 VSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVL 330
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+G N ++LI MY+KCG IE + + F + WN++I G A HG G A
Sbjct: 331 VLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIA 390
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L L M D VK D ITF+ +L+ACSH GLV+EG ME D+G+ ++EHY CM+D
Sbjct: 391 LDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMID 450
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA LD A LIEAMPFEP + LL AC D+E+ +VA + L
Sbjct: 451 LLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLE----LEPE 506
Query: 410 E---LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
E ++ ++++ +W E + +M + G+ K G S IEV F A H
Sbjct: 507 EHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSH 564
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 142/306 (46%), Gaps = 11/306 (3%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
H IK+G +Y ++ Y I A K+F + ++D ++WN+M+ F + G
Sbjct: 22 HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81
Query: 93 DHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVVSWNSL 144
+ A++ + M D SF ++ G A +G + + + + +V + ++L
Sbjct: 82 ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+ Y +E A E+FK + ++N +TWN +++GY + L D M+ V+ D
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF-- 262
T +L+ + + ++H +GLAS+ A+I Y++CGSIE + VF
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261
Query: 263 -YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
+++ D WN+++ G + G ALK M V D F +L +CS +
Sbjct: 262 AIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATL 321
Query: 322 QEGCEL 327
Q G ++
Sbjct: 322 QLGQQV 327
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 146/327 (44%), Gaps = 42/327 (12%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N++I Y GE+ A +MF + ++ ++WNTM+ G++ + ++ MK
Sbjct: 38 NNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFA 97
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D + S+L A +G +E G ++H G N A +AL+DMYAKC +E + EV
Sbjct: 98 VDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEV 157
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL---------- 311
F +++ WNA+I G A G A LL M V+ DD TF L
Sbjct: 158 FKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLH 217
Query: 312 -LSACSHAGLVQEG-----------------CELFSRMEKDFG---VTRKLEH--YGCMV 348
L+ HA +V+ G C E+ F TR L+H + ++
Sbjct: 218 KLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSIL 277
Query: 349 DLLGRARLLDRAIELIEAMPFEPT---ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
++ L + A++ E M + A+L +C L++G +V +V KS +
Sbjct: 278 TGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVL-KSGF 336
Query: 406 LSDGEL---MMFANLYASCGQWEEANR 429
+G + ++F +Y+ CG E+A +
Sbjct: 337 EPNGFVASSLIF--MYSKCGVIEDARK 361
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H A +G ++ + +I YAKCG I + ++F ++ +D WN MI G G
Sbjct: 22 HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL+ L M D +F +L + G V+ G ++ S M K G +
Sbjct: 82 ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVK-MGYEGNVFAGSA 140
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
++D+ + ++ A E+ +++ +I ++ +I ++GDR
Sbjct: 141 LLDMYAKCERVEDAFEVFKSI------NIRNSVTWNALISGYAQVGDR 182
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 247/485 (50%), Gaps = 53/485 (10%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
H Q + +GF Y+ LL +Y S + A KVFE + WN ++
Sbjct: 47 HAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTS 106
Query: 93 DHAMKLIDLMPLKDVT------SF-------------------NIMISGY-----ARIGK 122
+++L M L V SF ++++GY R
Sbjct: 107 KKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNL 166
Query: 123 IH--------------SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
I+ A Y+FD++P +VV WNSL+ Y G+ + A ++F +M +N
Sbjct: 167 INLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERN 226
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW MV G+ ++ + LFD+M+ V+ D + + + LSACA LG L G IH
Sbjct: 227 VRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHG 286
Query: 229 YATDNGLASNPHA----TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
Y + + ALI MYA CG+++ + ++F + ++ W+++I G A G
Sbjct: 287 YVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQG 346
Query: 285 YGYAALKLLGEM---NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
G A+++ M + V+ D+ITFIG L+ACSHAGL+ +G LF M K FGV ++
Sbjct: 347 CGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQI 406
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401
EHYGCMVDLL RA LL A+ LIE+MP +P ++ GALLS C +H++ EI VAK +
Sbjct: 407 EHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLSF 466
Query: 402 K--SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ N + G M+ AN+YA+ G+W++ R M+D G+ K +G S IE+NG F+
Sbjct: 467 EIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEINGVLCSFMV 526
Query: 460 GGIGH 464
G H
Sbjct: 527 GEETH 531
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 155/332 (46%), Gaps = 53/332 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY-----GSLR 59
GV A+ +++ LL A G +HG+ + G+ ++YV+T L+ +Y G
Sbjct: 120 GVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDF 179
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ A +F++MP+ +++ WNS+L + G D A K+ D MP ++V ++ IM++G+A+
Sbjct: 180 DLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQ 239
Query: 120 IGKIHSARYIFDKVPAKDV-------------------------------VSW------- 141
G+ A +FD++ V +W
Sbjct: 240 NGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPV 299
Query: 142 -----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM- 195
N+LI Y + G M+ A ++F+++ +N ++W++++TG+ + +E + +F M
Sbjct: 300 LVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLML 359
Query: 196 --KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKC 252
V+PD +T L+AC++ G + G R+ G+ ++D+ ++
Sbjct: 360 CSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRA 419
Query: 253 GSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
G + ++L + +K + W A++ G LH
Sbjct: 420 GLLTEALSLIESMPMKPNNAVWGALLSGCRLH 451
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH----VYVQTALLKMYG 56
M+ GV D + L A L +G +HG +T H V + AL+ MY
Sbjct: 253 MRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYA 312
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
S +D A+K+FE++P+++ ++W+S++ FA G A+++ LM + SG
Sbjct: 313 SCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLM----------LCSG 362
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVIT 171
+ D +++ + A ++AG + +F+ M ++ +
Sbjct: 363 QNEV--------------RPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEH 408
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
+ MV R+ L E + L + M +KP+ ++LS C
Sbjct: 409 YGCMVDLLSRAGLLTEALSLIESMP---MKPNNAVWGALLSGC 448
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
++ V+ + + SVL +C + +L A+ H +G + + L+ +Y GS+
Sbjct: 21 RSSRVRQQF--IFSVLKSCVSFRNL---AKTHAQIVVSGFSQKNYILNHLLSLYISFGSL 75
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+ +VF WN +I G +++L M + V+A+ T+ LLSAC
Sbjct: 76 GSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSAC 135
Query: 316 SHAGLVQEGCELFSRM 331
+ L +EG ++ R+
Sbjct: 136 VRSRLFREGEQIHGRV 151
>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 226/382 (59%), Gaps = 13/382 (3%)
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
G+M HA+ + + + DV +I Y G++ +R +FD +P + VSWN+++ Y
Sbjct: 69 GKMVHAIIVTSGI-VPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYI 127
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN---VKPDYLT 206
+ A E+F M ++V++WNTM+ GY ++E ++L +M + + V P+ T
Sbjct: 128 RHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPT 187
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS- 265
+++VL+ACA G LETG +H + N + + +LIDMY KCGSIE++L+VF K+
Sbjct: 188 MSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAP 247
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ +D++ W MI GLA+HG ALK+ G M D+ + DD+T +G+L+AC+H GLV EG
Sbjct: 248 EARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGL 307
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
F +EK + +T K+EHYGC++DLLGR L A +I M +P I GA L+AC +
Sbjct: 308 RHFYSLEK-YAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPNAVIWGAFLNACKV 366
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGEL---MMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
H ++E+G+ + A+ L G+ +M ++LYA W R R MN+ I KT
Sbjct: 367 HSNVELGE----IAAAELTRLDPGDPWAKVMLSSLYAKLQDWNSLARERREMNNLQIKKT 422
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
G S IE++G H+F+AGG H
Sbjct: 423 PGCSSIELDGEVHEFVAGGFQH 444
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 141/312 (45%), Gaps = 46/312 (14%)
Query: 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI 76
L AAG+ ++ G M+H + +G V+V T L+++YG + + ++F+ MP +
Sbjct: 57 LPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRST 116
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI------------H 124
++WN+M+ + + A +L MP +DV S+N MI+GY+ +G+
Sbjct: 117 VSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISP 176
Query: 125 SARYIFDKVPAKDVV-------------SW-----------------NSLILAYTNAGEM 154
S+ ++ P V W SLI Y G +
Sbjct: 177 SSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSI 236
Query: 155 EKAGEMFKKML-VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
EKA ++F+K +++ +W TM+ G + + +F M+ + PD +T+ VL+A
Sbjct: 237 EKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNA 296
Query: 214 CANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVF 271
CA+ G ++ G R H Y+ + + +ID+ + G ++++ + ++K +
Sbjct: 297 CAHCGLVDEGLR-HFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPNAV 355
Query: 272 CWNAMILGLALH 283
W A + +H
Sbjct: 356 IWGAFLNACKVH 367
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 54/253 (21%)
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL--- 220
M +++ M + S + + +F +M A V PD + + L+AC SL
Sbjct: 1 MPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAA 60
Query: 221 ------ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
G +H +G+ + +T LI +Y + G + S +F V+ WN
Sbjct: 61 GMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWN 120
Query: 275 A-------------------------------MILGLALHGYGYAALKLLGEM--NDSC- 300
A MI G +L G AL+L +M SC
Sbjct: 121 AMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCP 180
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFS-----RMEKDFGVTRKLEHYGCMVDLLGRAR 355
V + T +L+AC+ AG ++ G + + RM D + R L +D+ +
Sbjct: 181 VYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSL------IDMYVKCG 234
Query: 356 LLDRAIELIEAMP 368
+++A+++ E P
Sbjct: 235 SIEKALQVFEKAP 247
>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
Length = 534
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/456 (32%), Positives = 239/456 (52%), Gaps = 2/456 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQ-TALLKMYGSLR 59
M L V D+++ P L AA L +G LH ++ AL+ +Y
Sbjct: 73 MPRLPVRPDHFTLPFALNAAASLRLLPLGASLHAVALRLALLPLRLPVANALVDLYAKCE 132
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
A +P D +++NS+L A A + A L MP + S+N M+ Y
Sbjct: 133 EFPAAHAALADIPAPDAVSFNSLLCAHARNASVRPAESLFAAMPTRTQVSWNAMVVLYVS 192
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G + +A +FD++P +D S LI+ Y G ++ A E+F KM K+++ M+ GY
Sbjct: 193 AGDLAAACRVFDEMPTRDTASSMVLIVGYCKCGLVQNARELFDKMPTKDLVARTAMINGY 252
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ + LF +++A ++PD T+ V+SA + +GS E + Y + N
Sbjct: 253 AQTGRPKVALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNE 312
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TAL+DM+AKCG+IEQ+L F + D + + A+I GLA HG+ AL + M
Sbjct: 313 KVLTALVDMHAKCGNIEQALSAFREIPRPDAYPYTALISGLATHGHENLALSVFERMRAE 372
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+K ITF+G+L+ACSHAG V++G E + M +D+G+ R +HY C++D+LGRA ++
Sbjct: 373 DIKPHPITFVGVLTACSHAGNVEKGLEYWEAMVQDYGIERHADHYACVIDMLGRAGRIEE 432
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A E+++ MP P LGALLSAC + ++EI + VA + + + G ++ +N+YA
Sbjct: 433 AFEMVQTMPMGPHPGALGALLSACKTYDNVEIAEVVANKLFELEPW-NTGNYILLSNIYA 491
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYH 455
WEEA R R++M K+ GS+ E H
Sbjct: 492 GKELWEEAERVRSLMRTKLPFKSPGSTWFEDRQREH 527
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 224/389 (57%), Gaps = 19/389 (4%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF------------ 110
DA +F ++ E DI D + + +L+D+ K V +
Sbjct: 96 DAISLFYRLREFDISP-----DHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFL 150
Query: 111 -NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
N+++ YA G+I AR +FDK+P +DV++WN +I G+ E A ++F +M +NV
Sbjct: 151 QNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNV 210
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+W +M+ GY + E +DLF EM+ + P+ +TV +VL ACA++G+L G RIH +
Sbjct: 211 RSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDF 270
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ +G N LIDMY KCG +E + +F + + V W+AMI GLA HG A
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDA 330
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L L +M ++ VK + +TFIG+L ACSH G+V++G + F+ M +D+G+ ++EHYGCMVD
Sbjct: 331 LALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVD 390
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
L RA LL A E I MP P + GALL C +H+++++ + + + +K + L+DG
Sbjct: 391 LFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHL-SKLDPLNDG 449
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTG 438
++ +N+YA G+WE+ R R +M D G
Sbjct: 450 YYVVLSNIYAEAGRWEDVARVRKLMRDRG 478
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 41/324 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++E + D+Y+ +LKA L G ++HG K G ++++Q ++ +Y
Sbjct: 104 LREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGE 163
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A KVF+KMP++D+I WN M+ G + A KL MP ++V S+ MI GYA+
Sbjct: 164 IGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQC 223
Query: 121 GKIHSARYIFDKVP---------------------------------------AKDVVSW 141
GK A +F ++ K++
Sbjct: 224 GKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVC 283
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y G +E A +F M + V++W+ M+ G + + LF++M VK
Sbjct: 284 NTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVK 343
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYAT-DNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+ +T +L AC+++G +E G + T D G+ ++D++++ G ++++ E
Sbjct: 344 PNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHE 403
Query: 261 VFYKSQV-KDVFCWNAMILGLALH 283
+ + W A++ G +H
Sbjct: 404 FIMNMPIAPNGVVWGALLGGCKVH 427
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 117/282 (41%), Gaps = 39/282 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F+ + V WNT + + + + LF ++ ++ PD+ T + VL AC+ L
Sbjct: 69 IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+ G +H Y GL SN ++ +YA CG I + +VF K +DV WN MI
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
L G A KL EM + V+ ++ ++ + G +E +LF ME D G+
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVR----SWTSMIGGYAQCGKSKEAIDLFLEME-DAGLL- 242
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
P E + A+L AC +L +G R+
Sbjct: 243 -------------------------------PNEVTVVAVLVACADMGNLVLGRRIHDF- 270
Query: 400 CAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMNDTGIV 440
+S Y + + ++Y CG E+A R + M + +V
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVV 312
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/489 (34%), Positives = 261/489 (53%), Gaps = 22/489 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D+ + + + L G +H + + +GF +V AL+ MYG
Sbjct: 198 MRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQ 257
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFA------SCGQMDHAMKLIDLMPLKDVTSFNIM- 113
++ A +VFE+MP K ++AWNSM++ + SC Q+ M + P + +M
Sbjct: 258 LEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMA 317
Query: 114 ISGYARI--GK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
S A++ GK +H YI D+ +SL+ Y G++E A +FK M +
Sbjct: 318 CSQSAQLLEGKFVHG--YIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTV 375
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN M++GY+ + + LF EM V+PD +T TSVL+AC+ L +LE G IH
Sbjct: 376 SWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLI 435
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ L +N AL+DMYAKCG++E++ VF +D+ W +MI HG Y AL
Sbjct: 436 VERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEAL 495
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L EM S VK D +TF+ +LSACSHAGLV +G F++M +G+ ++EHY C++ L
Sbjct: 496 ELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITL 555
Query: 351 LGRARLLDRAIELIEAMP-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LGRA L A E++++ P +L L SAC +H++L++G +A+ + K S
Sbjct: 556 LGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSST 615
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA--------GG 461
+++ +N+YAS G+W+E R+ M D G+ K G S IE+N F G
Sbjct: 616 YIIL-SNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVEDNSHYHLEG 674
Query: 462 IGHLSNLLT 470
IG++ + LT
Sbjct: 675 IGNILSYLT 683
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 188/372 (50%), Gaps = 11/372 (2%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D+Y++P +LKA G L +G M+H +K G + V ++L+ MY + A
Sbjct: 102 LKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAV 161
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIG 121
K+F++MP+KD+ WN+++ + G+ + A++ +M D + IS AR+
Sbjct: 162 KLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLL 221
Query: 122 KIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ R I ++ D +L+ Y G++E A E+F++M K V+ WN+M+
Sbjct: 222 DLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMIN 281
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY I + LF M + VKP T+TS L AC+ L G +H Y N +
Sbjct: 282 GYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQP 341
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ ++L+D+Y KCG +E + +F WN MI G G + AL+L GEM+
Sbjct: 342 DIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMS 401
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARL 356
S V+ D ITF +L+ACS +++G E+ + + E++ G + G ++D+ +
Sbjct: 402 KSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVV--MGALLDMYAKCGA 459
Query: 357 LDRAIELIEAMP 368
++ A + + +P
Sbjct: 460 VEEAFGVFKCLP 471
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/465 (25%), Positives = 204/465 (43%), Gaps = 63/465 (13%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK- 74
LL+A+ S G +LH + + G VYV L+ +Y S D A VF+ +
Sbjct: 9 LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPF 68
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLID-------LMPLKDVTSFNIMISGYARIGKIHSAR 127
+I N ++ + D A+ L D L P D ++ ++ + ++ +
Sbjct: 69 EISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKP--DSYTYPSVLKACGGLRRVVLGQ 126
Query: 128 YIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
I + + D+V +SL+ Y E E A ++F +M K+V WNT+++ Y +S
Sbjct: 127 MIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSG 186
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
+ E + F M+ +PD +T+T+ +S+CA L L+ G IH ++G + +
Sbjct: 187 KFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSA 246
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
AL+DMY KCG +E ++EVF + K V WN+MI G G G + ++L M VK
Sbjct: 247 ALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKP 306
Query: 304 DDITFIGLLSACSHAGLVQEGCELF-----SRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
T L ACS + + EG + +R++ D + L +DL + ++
Sbjct: 307 TLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSL------MDLYFKCGKVE 360
Query: 359 RAIELIEAMP----------------------------------FEPTESILGALLSACV 384
A + + MP EP ++L+AC
Sbjct: 361 SAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACS 420
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCGQWEEA 427
LE G + ++ ++ L + E++M A ++YA CG EEA
Sbjct: 421 QLAALEKGREIHNLIVERN--LGNNEVVMGALLDMYAKCGAVEEA 463
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/468 (33%), Positives = 255/468 (54%), Gaps = 9/468 (1%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D+ + +L AA L +G+ + +K GF YV T L+ +Y ++ A
Sbjct: 204 GVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTA 263
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID--LMPLKDVTSFNI--MISGYARI 120
+F ++ D+IA+N+M+ F + G + ++KL L + V+S I +I ++
Sbjct: 264 RLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPF 323
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYT----NAGEMEKAGEMFKKMLVKNVITWNTMV 176
G +H A I ++ ++ A+T E++ A +F + K V+ WN M+
Sbjct: 324 GHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMI 383
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+GY ++ + LF EM P+ +T+T++LSACA LGSL G +H L
Sbjct: 384 SGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLE 443
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
N + +TAL+DMYAKCG+I ++ ++F K+ WN MI G LHGYG+ ALKL EM
Sbjct: 444 PNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEM 503
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+TF+ +L ACSHAGLV EG E+F M + + +EHY CMVD+LGR+
Sbjct: 504 LHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQ 563
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L++A+E I+ MP EP ++ G LL AC+IH+D +I R+A + + S G ++ +N
Sbjct: 564 LEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIA-RLASERLFELDPGSVGYYVLLSN 622
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+Y+ + +A R ++ + K+ G ++IEVNG+ H F++G H
Sbjct: 623 IYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSH 670
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 168/370 (45%), Gaps = 16/370 (4%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
DN+++ + A S+ ++LH +I G+ +V+V +AL+ +Y + A KV
Sbjct: 109 PDNFTYAFAVAAC---SNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKV 165
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKI 123
F+ MPE+D + WN+M++ D +++L M D ++ ++ A + ++
Sbjct: 166 FDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQEL 225
Query: 124 HSARYIFDKVPAK------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
I + K D V LI Y+ G++ A +F+++ ++I +N M++
Sbjct: 226 KVGMGI-QCLALKIGFGFCDYV-LTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMIS 283
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G+ + V LF E+ + T+ ++ + G L IH + +G+
Sbjct: 284 GFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIIL 343
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
NP +TA +Y K I+ + +F +S K V WNAMI G +G A+ L EM
Sbjct: 344 NPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMM 403
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ + +T +LSAC+ G + G + + K + + +VD+ + +
Sbjct: 404 KTEFTPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNI 462
Query: 358 DRAIELIEAM 367
A +L ++M
Sbjct: 463 SEAWQLFDSM 472
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 181/450 (40%), Gaps = 45/450 (10%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA----- 87
H Q I G+ + T L + A +F +P+ DI +N ++ F+
Sbjct: 32 HAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSP 91
Query: 88 --SCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
S H + +L P +F + + + A I D +V ++L+
Sbjct: 92 SSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGY-GSNVFVGSALV 150
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y + A ++F M ++ + WNTM+ G +++ + + + LF EM A V+ D
Sbjct: 151 DLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSS 210
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
TVT+VL A A L L+ G I A G + T LI +Y+KCG + + +F +
Sbjct: 211 TVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRI 270
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS----------AC 315
D+ +NAMI G +G ++KL E+ S + T +GL+ AC
Sbjct: 271 NRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLAC 330
Query: 316 S-HAGLVQEGCELFSRMEKDF-GVTRKLEH------------------YGCMVDLLGRAR 355
S H V+ G L + F + KL + M+ +
Sbjct: 331 SIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNG 390
Query: 356 LLDRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
+ AI L + M F P + +LSAC L G V ++ KS L +
Sbjct: 391 STETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLI--KSENLEPNIYV 448
Query: 413 MFA--NLYASCGQWEEANRWRNMMNDTGIV 440
A ++YA CG EA + + M++ V
Sbjct: 449 STALVDMYAKCGNISEAWQLFDSMSEKNTV 478
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 249/447 (55%), Gaps = 12/447 (2%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G+ +H +IK G ++V L+ +Y + D KVF++M +D+I+WNS++ A+
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYEL 325
Query: 89 CGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKVPAK-----DVV 139
Q A+ L M L D + + S +++G+I + R + K D+
Sbjct: 326 NEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDIT 385
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD--EMKA 197
N++++ Y G ++ A +F + K+VI+WNT+++GY ++ E +++++ E +
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEG 445
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
G + + T SVL AC+ G+L G ++H NGL + T+L DMY KCG ++
Sbjct: 446 GEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDD 505
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+L +FY+ + WN +I HG+G A+ L EM D VK D ITF+ LLSACSH
Sbjct: 506 ALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSH 565
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+GLV EG F M+ D+G+T L+HYGCMVDL GRA L+ A+ I++MP +P SI G
Sbjct: 566 SGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWG 625
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
ALLSAC +H ++++G ++A + G ++ +N+YAS G+WE + R++ +
Sbjct: 626 ALLSACRVHGNVDLG-KIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGK 684
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ KT G S +EV+ F G H
Sbjct: 685 GLRKTPGWSSMEVDNKVEVFYTGNQTH 711
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 184/373 (49%), Gaps = 15/373 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D +FP +LKA ++ G +H +K GF VYV +L+ +Y + +A
Sbjct: 148 GLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNA 204
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG--- 121
+F++MP +D+ +WN+M+ + G A+ L D + D + ++S G
Sbjct: 205 RILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFN 264
Query: 122 ---KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
IHS Y ++ N LI Y G ++ ++F +M V+++I+WN+++
Sbjct: 265 RGVTIHS--YSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKA 322
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LAS 237
Y ++ + + LF EM+ ++PD LT+ S+ S + LG + + + G
Sbjct: 323 YELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLE 382
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ A++ MYAK G ++ + VF KDV WN +I G A +G+ A+++ M
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIME 442
Query: 298 DSC--VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+ + A+ T++ +L ACS AG +++G +L R+ K+ G+ + + D+ G+
Sbjct: 443 EEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYGKCG 501
Query: 356 LLDRAIELIEAMP 368
LD A+ L +P
Sbjct: 502 RLDDALSLFYQIP 514
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 14/299 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH + + + +V + L+ +Y L + A F+ + +D+ AWN M+ + G
Sbjct: 73 LHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGY 132
Query: 92 MDHAMKLIDLMPL-----KDVTSFNIMISGYARI---GKIHSARYIFDKVPAKDVVSWNS 143
++ L L D +F ++ + KIH F + DV S
Sbjct: 133 SSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFM--WDVYVAAS 190
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y G + A +F +M +++ +WN M++GY +S E + L D ++A D
Sbjct: 191 LIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRA----MD 246
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+TV S+LSAC G G IH Y+ +GL S + LID+YA+ GS++ +VF
Sbjct: 247 SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFD 306
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ V+D+ WN++I L+ A+ L EM S ++ D +T I L S S G ++
Sbjct: 307 RMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIR 365
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
L D K GN + V ++ C NL S + +H + N + L+++Y
Sbjct: 41 LQDCWKNGNESKEIDDVHTLFRYCTNLQSAKC---LHARLVVSNAIQNVCISAKLVNLYC 97
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG-EMNDSCVKADDITFI 309
G++ + F +DV+ WN MI G GY ++ M S ++ D TF
Sbjct: 98 YLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFP 157
Query: 310 GLLSACSHAGLVQEGCELFSRMEK-----DFGVTRKLEHYGCMVDLLGRARLL 357
+L AC + V +G ++ K D V L H C + AR+L
Sbjct: 158 SVLKACRN---VTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARIL 207
>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Cucumis sativus]
gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Cucumis sativus]
Length = 840
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 251/468 (53%), Gaps = 32/468 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + D+ + ++ AA + +G H ++ V V ++++ MY
Sbjct: 374 MQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEK 433
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A +VF+ ++D+I WN++L A+A G +KL M L+ +
Sbjct: 434 LECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGL------------- 480
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM----LVKNVITWNTMV 176
+V+SWNS+IL N G++++A + F +M + N+ITW T++
Sbjct: 481 --------------PPNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPNLITWTTLI 526
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G ++ L E F M+ +KP+ L+++S+LSAC+ + SL G IH Y T + L+
Sbjct: 527 CGLAQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITRHELS 586
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ +L++MYAKCGSI Q+ VF K++ +NAMI G ALHG AL L +
Sbjct: 587 VSTPVLCSLVNMYAKCGSINQAKRVFDMILKKELPVYNAMISGYALHGQAVEALSLFRRL 646
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ C+K D+ITF +LSAC HAGLV+EG ELF M + + + EHYGC+V +L R+
Sbjct: 647 KEECIKPDEITFTSILSACGHAGLVREGLELFIDMVSNHKIVAQAEHYGCLVSILSRSHN 706
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
LD A+ +I MPFEP I G+LL+AC H D E+ +R+ + + K + G + +N
Sbjct: 707 LDEALRIILGMPFEPDAFIFGSLLAACREHPDFELKERLFERLL-KLEPDNSGNYVALSN 765
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ G W+EA++ R +M + + K G S+I++ H F AG H
Sbjct: 766 AYAATGMWDEASKVRGLMKERSLSKIPGHSLIQIGNKTHVFFAGDKSH 813
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 219/446 (49%), Gaps = 14/446 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ DN+ P+ KA+G L G +H +K G G +YV T+LL MYG
Sbjct: 172 MHEYGLLLDNFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGL 231
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++A KVF+K+ EK+I+AWNSM+ F G A++ M ++ V + +S +
Sbjct: 232 CEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSA 291
Query: 121 ---------GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
GK A + + +++ +SLI Y+ G +E A +F +ML K+ +T
Sbjct: 292 SANLSVIDEGKQGHALAVLSGLELTNILG-SSLINFYSKVGLVEDAELVFSEMLEKDTVT 350
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN +V+GY+ + L +DL M++ N++ D +T+ S+++A A+ +L+ G H +
Sbjct: 351 WNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCV 410
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N L S+ +++IDMYAKC +E + VF + +D+ WN ++ A G+ LK
Sbjct: 411 RNNLESDVAVASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLK 470
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M + + I++ ++ + G V + + F M+ G+ L + ++ L
Sbjct: 471 LFYQMQLEGLPPNVISWNSVILGLLNKGKVDQAKDTFMEMQ-SLGICPNLITWTTLICGL 529
Query: 352 GRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
+ L D A ++M +P + +LLSAC L G + + +S
Sbjct: 530 AQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITRHELSVST 589
Query: 409 GELMMFANLYASCGQWEEANRWRNMM 434
L N+YA CG +A R +M+
Sbjct: 590 PVLCSLVNMYAKCGSINQAKRVFDMI 615
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 169/359 (47%), Gaps = 31/359 (8%)
Query: 28 IGLMLHGQTIKTG--FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA 85
+G +HG+ +K G + Y++T L+ Y + A ++F K+ ++ +W +++
Sbjct: 96 LGQQIHGRILKNGESIAKNEYIETKLVIFYSKCDESEIANRLFGKLQVQNEFSWAAIMGL 155
Query: 86 FASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA---RYI-FDKVPAKDVVSW 141
+ G A LM +++ + +++ + ++ R+I F K VV
Sbjct: 156 KSRMGFNQEA-----LMGFREMHEYGLLLDNFVIPIAFKASGALRWIGFGKSVHAYVVKM 210
Query: 142 ---------NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
SL+ Y G E+A ++F K+L KN++ WN+M+ + ++ L E V+ F
Sbjct: 211 GLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETF 270
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
EM+ V P +T++S LSA ANL ++ G + H A +GL ++LI+ Y+K
Sbjct: 271 YEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYSKV 330
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G +E + VF + KD WN ++ G +G AL L M ++ D +T ++
Sbjct: 331 GLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIM 390
Query: 313 SACSHAGLVQEGCE-----LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
+A + + ++ G E + + +E D V + +D+ + L+ A + +A
Sbjct: 391 AAAADSRNLKLGKEGHSFCVRNNLESDVAVASSI------IDMYAKCEKLECARRVFDA 443
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 173/412 (41%), Gaps = 48/412 (11%)
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL---MPLKDVT----SFNIMISG- 116
F F ++ I++ S L+ +S + H ++ +DL + L+D+T + ++ G
Sbjct: 29 FASFSQIASNVQISYKSYLNHISSLCKQGHLLEALDLVTDLELEDITIGPDVYGELLQGC 88
Query: 117 -YARI----GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
Y R +IH + AK+ L++ Y+ E E A +F K+ V+N +
Sbjct: 89 VYERALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSKCDESEIANRLFGKLQVQNEFS 148
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W ++ R E + F EM + D + A L + G +H Y
Sbjct: 149 WAAIMGLKSRMGFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALRWIGFGKSVHAYVV 208
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
GL + T+L+DMY KCG E++ +VF K K++ WN+MI+ +G A++
Sbjct: 209 KMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVE 268
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE-----LFSRMEKDFGVTRKLEHYGC 346
EM V +T LSA ++ ++ EG + + S +E + L ++
Sbjct: 269 TFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYS 328
Query: 347 MVDLLGRAR-------------------------LLDRAIELIEAMPFEPTE---SILGA 378
V L+ A L+DRA++L M E L +
Sbjct: 329 KVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLAS 388
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANR 429
+++A ++L++G + C ++N SD + ++YA C + E A R
Sbjct: 389 IMAAAADSRNLKLG-KEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARR 439
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 222/358 (62%), Gaps = 5/358 (1%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y SAR +FD++P K++V+WNS++ AY +G++ A +F +M ++V+
Sbjct: 893 NTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVV 952
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDE-MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
TW++M+ GY++ Y + +++FD+ M+ G+ K + +T+ SV+ ACA+LG+L G +H Y
Sbjct: 953 TWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRY 1012
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK--DVFCWNAMILGLALHGYGY 287
D L T+LIDMYAKCGSI + VFY++ VK D WNA+I GLA HG+
Sbjct: 1013 ILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIR 1072
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
+L+L +M +S + D+ITF+ LL+ACSH GLV+E F + K+ G K EHY CM
Sbjct: 1073 ESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSL-KESGAEPKSEHYACM 1131
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
VD+L RA L+ A + I MP +PT S+LGALL+ C+ H +LE+ + V K + + +
Sbjct: 1132 VDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIELQPH-N 1190
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
DG + AN+YA Q+ A R M G+ K AG S+++++G+ H+F+A H
Sbjct: 1191 DGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHRFIAHDKTHF 1248
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 146/326 (44%), Gaps = 46/326 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ D+ ++P L+K++ LS+ +G LH +K+G +++ L+ MYGS R
Sbjct: 845 MLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRD 904
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A K+F++MP K+++ WNS+LDA+A G + A + D M +DV +++ MI GY +
Sbjct: 905 QASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKR 964
Query: 121 GKIHSA----------------------------------------RYIFDKVPAKDVVS 140
G+ + A RYI D V+
Sbjct: 965 GEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVIL 1024
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVK--NVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
SLI Y G + A +F + VK + + WN ++ G E + LF +M+
Sbjct: 1025 QTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRES 1084
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+ PD +T +L+AC++ G ++ ++G ++D+ ++ G ++ +
Sbjct: 1085 KIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVKDA 1144
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHG 284
+ + +K +LG L+G
Sbjct: 1145 HDFISEMPIKPT----GSMLGALLNG 1166
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+LA +++ A + K+ WN ++ G+ S+ + + ++ +M + PD+
Sbjct: 795 MLAVNVTSDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDH 854
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASN-------------------------- 238
+T ++ + + L + + G +H +GL +
Sbjct: 855 MTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDE 914
Query: 239 -PHAT----TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
PH +++D YAK G + + VF + +DV W++MI G G AL++
Sbjct: 915 MPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIF 974
Query: 294 GE-MNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ M KA+++T + ++ AC+H G + G
Sbjct: 975 DQMMRMGSSKANEVTMVSVICACAHLGALNRG 1006
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/365 (16%), Positives = 152/365 (41%), Gaps = 50/365 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G H D ++ +L+ S L + + + G+ ++ T L+ +
Sbjct: 205 MRDCGFHFDKFTLTPVLQVYCNTGKSERALSVFNEILSRGWLDE-HISTILVVSFCKWGQ 263
Query: 61 IDDAFKVFEKMPEKDII----AWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNI 112
+D AF++ E + E+DI + ++ F ++D A +L + M D+ +++
Sbjct: 264 VDKAFELIEMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDV 323
Query: 113 MISGYARIGKIHSARYIFDKV------PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
+I G + + A ++ ++ P + ++ L+ +++ E+ + E+ +
Sbjct: 324 LIGGLCKHKDLEMALSLYLEIKRSGIPPDRGILG--KLLCSFSEESELSRITEVIIGDID 381
Query: 167 KN--VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
K ++ + ++ G++R+ L E + GN + D V+ ++ +
Sbjct: 382 KKSVMLLYKSLFEGFIRNDLVHEAYSFIQNL-MGNYESD--GVSEIVKLLKD-------- 430
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL----EVFYKSQVKDVFCWNAMILGL 280
+ + + + + +I+ K ++ ++ ++ + +N +I G+
Sbjct: 431 ------HNKAILPDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGM 484
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
G +LKLLGEM D+ V+ T C + G + E C+ ++ + +K
Sbjct: 485 CKEGRSEESLKLLGEMKDAGVEPSQFTL-----NCIY-GCLAERCDFVGALD----LLKK 534
Query: 341 LEHYG 345
+ YG
Sbjct: 535 MRFYG 539
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 40 GFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK----DIIAWNSMLDAFASCGQMDHA 95
GF GH+ TA + +D ++F + D+IA++ ++ A + A
Sbjct: 574 GFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEA 633
Query: 96 MKLIDLMPLK----DVTSFNIMISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILA 147
L + M K V ++N MI G+ + G+I +++ DV+++ SLI
Sbjct: 634 DILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHG 693
Query: 148 YTNAGEMEKA----GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+G +A EM K N IT+ ++ G + E + F EM+ ++PD
Sbjct: 694 LCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPD 753
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 154 MEKAGEMFKKMLVK----NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
+++ E+F+ + +VI ++ ++ ++ +E LF+EM + +KP T S
Sbjct: 595 VDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNS 654
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
++ G ++ G V ++ NP T ++ C S S +F +++K
Sbjct: 655 MIDGWCKEGEIDRGLSCIVRMYED--EKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKG 712
Query: 270 VFCWN------AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
C+ A+I GL G+ AL EM + ++ D ++ L+S+ + +
Sbjct: 713 KDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINA 772
Query: 324 GCELFSRMEKDFGVTRKLEHYG 345
G FG+ R++ H G
Sbjct: 773 G----------FGIFREMVHKG 784
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 246/456 (53%), Gaps = 33/456 (7%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
+G +H + G V + ++ Y S ID + VF N + D F
Sbjct: 88 LGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVF-----------NGIGDYFT 136
Query: 88 SCGQMDHAMKLIDL--------MPLKDVTSFNIMISG-----YARIGKIHSARYIFDKVP 134
+ +++L+ + + L+ F++ ++ Y + G+I+ A +FD +
Sbjct: 137 FPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMT 196
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
+DV SWN+L+ YT +G ++ A +F++M +N+++W TM++GY +S L + + LFDE
Sbjct: 197 IRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDE 256
Query: 195 M--KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
M + V+P+++T+ SVL ACA L +LE G +IH A GL SN AL MYAKC
Sbjct: 257 MVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKC 316
Query: 253 GSIEQSLEVFYK--SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
GS+ + F K K++ WN MI A +G+G A+ EM + ++ DDITF G
Sbjct: 317 GSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTG 376
Query: 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
LLS CSH+GLV G + F+ M + + ++EHY C+ DLLGRA L A +L+ MP
Sbjct: 377 LLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMP 436
Query: 371 PTESILGALLSACVIHQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
SI G+LL+AC H++LE+ + A+ V N G ++ +N+YA G+W+E +
Sbjct: 437 AGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPEN---TGNYVLLSNMYAEAGRWQEVD 493
Query: 429 RWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R ++ G K+ G S IE+NG H FL G H
Sbjct: 494 KLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSH 529
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 43/260 (16%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D ++FP +LK++ L S +G +HG ++ G +YV T+L+ +YG I+DA KVF
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 192
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ M +D+ +WN++L + G +D A+ + + MP +++ S+ MISGY++ G A
Sbjct: 193 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252
Query: 129 IFDKVPAKDV---VSW-------------------------------NS-------LILA 147
+FD++ +D +W NS L
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAM 312
Query: 148 YTNAGEMEKAGEMFKKMLV--KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y G + A F K+ KN+I WNTM+T Y ++ V F EM ++PD +
Sbjct: 313 YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDI 372
Query: 206 TVTSVLSACANLGSLETGAR 225
T T +LS C++ G ++ G +
Sbjct: 373 TFTGLLSGCSHSGLVDVGLK 392
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 114/288 (39%), Gaps = 39/288 (13%)
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P L+ V L L+ G ++H + GL + ++ YA G I+ S+
Sbjct: 67 PPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVS 126
Query: 261 VF------------YKSQVKDVFCW-----NAMILGLALHGYGYAALKLL------GEMN 297
VF KS V+ + W + +IL + L Y A L+ GE+N
Sbjct: 127 VFNGIGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEIN 186
Query: 298 DSCVKADDIT------FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
D+ D++T + LL+ + +G + +F RM R + + M+
Sbjct: 187 DAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMP-----WRNIVSWTTMISGY 241
Query: 352 GRARLLDRAIELIEAMPFE-----PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
++ L +A+ L + M E P + ++L AC LE G ++ ++ C
Sbjct: 242 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS 301
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSY 454
+ L+ +YA CG +A + +N A +++I SY
Sbjct: 302 NASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASY 349
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
++ GV + + +L A LS+ G +H + G + V AL MY +
Sbjct: 260 EDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSL 319
Query: 62 DDAFKVFEKM--PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
DA F+K+ EK++IAWN+M+ A+AS G A+ M + +I +G
Sbjct: 320 VDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTG 376
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 242/467 (51%), Gaps = 65/467 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ GV +++F L KA G +G +HGQTI G G
Sbjct: 137 MRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFG----------------- 179
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D+ NSM+D + CG ++
Sbjct: 180 -------------EDLHVGNSMIDMYIKCGFLE--------------------------- 199
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
R +FD++P +DV+SW LI AY +G ME AGE+F + VK+++ W MV+G+
Sbjct: 200 ----CGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFA 255
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ E + F++M+ V+ D +T+ V+SACA LG+ + I A +
Sbjct: 256 QNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHS 315
Query: 241 AT--TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+ALIDMY+KCGS+ + VF + ++V+ +++MILG A+HG + A+KL EM
Sbjct: 316 VVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVK 375
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ +K + +TFIG+L+ACSHAG+V++G ++F MEK +G+ +HY CMVDLLGRA L
Sbjct: 376 TEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQ 435
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A EL++ MP EP + GALL AC IH+ +I A + Y G ++ AN+Y
Sbjct: 436 EAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCI-GNYILLANIY 494
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV-NGSYHKFLAGGIGH 464
ASCG+W + + R +M G+ K S IE G H+F +G + H
Sbjct: 495 ASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTH 541
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 33/241 (13%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F ++ N +N ++ GYL + E + + M+ V P T T++ AC
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161
Query: 220 LETGARIHVYAT-DNGLASNPHATTALIDMYAKC-------------------------- 252
+ G +IH G + H ++IDMY KC
Sbjct: 162 VGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELIS 221
Query: 253 -----GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
G++E + E+F VKD+ W M+ G A + A+ +M + V+ D+IT
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
IG++SAC+ G + + EK +FG + ++D+ + + A + +
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQG 341
Query: 367 M 367
M
Sbjct: 342 M 342
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/506 (32%), Positives = 257/506 (50%), Gaps = 50/506 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLML---HGQTIKTGFCGHVYVQTALLKMYGS 57
+QE G+ D P+ L AA + S L + H + G V+V AL+ YG
Sbjct: 69 LQERGIKPD---MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGK 125
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM--------------------- 96
+C++ A +VF+ + +D+++W S+ + CG M
Sbjct: 126 CKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSI 185
Query: 97 -----KLIDLMPLKDVTSFNI-------------MISGYARIGKIHSARYIFDKVPAKDV 138
+L DL K++ F + ++S YA+ + AR +FD +P +DV
Sbjct: 186 LPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDV 245
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNV----ITWNTMVTGYLRSQLYIEVVDLFDE 194
VSWN ++ AY E EK +F KM V TWN ++ G + + E V++F +
Sbjct: 246 VSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRK 305
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M+ KP+ +T++S+L AC+ +L G IH Y + + +TTAL+ MYAKCG
Sbjct: 306 MQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGD 365
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ S VF + KDV WN MI+ A+HG G AL L +M S V+ + +TF G+LS
Sbjct: 366 LNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSG 425
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
CSH+ LV+EG ++F+ M +D V HY C+VD+ RA L+ A + I+ MP EPT S
Sbjct: 426 CSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTAS 485
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
GALL+AC +++++E+ AK + + + G + N+ + W EA++ R +M
Sbjct: 486 AWGALLAACRVYKNVELAKISAKKL-FEIEPNNPGNYVSLFNILVTAKMWSEASQVRILM 544
Query: 435 NDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ GI KT G S ++V H F+ G
Sbjct: 545 KERGITKTPGCSWLQVGNKVHTFVVG 570
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI N G+ +A ++F + + T +T+++ L E + ++ ++ +KPD
Sbjct: 18 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ ACA G +H AT G+ S+ ALI Y KC +E + VF
Sbjct: 78 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
V+DV W ++ G+ + + EM S VK + +T +L AC+ ++
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 197
Query: 324 GCEL 327
G E+
Sbjct: 198 GKEI 201
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/330 (43%), Positives = 197/330 (59%), Gaps = 3/330 (0%)
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK--NVITWNTMVTGYLRSQLYIEVVDLFDE 194
D S N+LI Y N +E+A +F M + N ++WN M+ Y++S E LFD
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M+ NV D S+LSAC LG+LE G IH Y +G+ + T +IDMY KCG
Sbjct: 188 MRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC 247
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+E++ EVF + K + WN MI GLA+HG G AA++L EM V D ITF+ +LSA
Sbjct: 248 LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 307
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
C+H+GLV+EG F M + G+ +EH+GCMVDLLGRA LL+ A +LI MP P
Sbjct: 308 CAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAG 367
Query: 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434
+LGAL+ AC IH + E+G+++ K V + S G ++ ANLYAS G+WE+ + R +M
Sbjct: 368 VLGALVGACRIHGNTELGEQIGKKVIELEPHNS-GRYVLLANLYASAGRWEDVAKVRKLM 426
Query: 435 NDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
ND G+ K G S+IE +F+AGG H
Sbjct: 427 NDRGVKKAPGFSMIESESGVDEFIAGGRAH 456
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 140/291 (48%), Gaps = 12/291 (4%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + +++P L++A I + G +H +K GF + L+ MY + + ++ A
Sbjct: 90 VSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQAR 149
Query: 66 KVFEKMPEKD--IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYAR 119
+VF+ MP++D ++WN+M+ A+ ++ A L D M L++V M+S
Sbjct: 150 RVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTG 209
Query: 120 IGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+G + ++I + D ++I Y G +EKA E+F ++ K + +WN M
Sbjct: 210 LGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCM 269
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN-G 234
+ G ++LF EM+ V PD +T +VLSACA+ G +E G Y T+ G
Sbjct: 270 IGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLG 329
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHG 284
L ++D+ + G +E++ ++ + V D A++ +HG
Sbjct: 330 LKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHG 380
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 3/194 (1%)
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+GYLR QL + ++ M +V P+ T ++ AC ++E G +IH + G
Sbjct: 67 SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD--VFCWNAMILGLALHGYGYAALKLLG 294
++ + LI MY S+EQ+ VF +D WNAMI + A L
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
M V D +LSAC+ G +++G + +EK G+ + ++D+ +
Sbjct: 187 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS-GIELDSKLATTVIDMYCKC 245
Query: 355 RLLDRAIELIEAMP 368
L++A E+ +P
Sbjct: 246 GCLEKASEVFNELP 259
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 217/367 (59%), Gaps = 13/367 (3%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ DV +I YA+ G++ SAR FD++ +++VSWN++I Y G+ E A ++F
Sbjct: 127 INDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDG 186
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
+ VKN I+W ++ G+++ + E ++ F EM+ V PDY+TV +V++ACANLG+L G
Sbjct: 187 LPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLG 246
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+H +N + +LIDMY++CG I+ + +VF + + + WN++I+G A++
Sbjct: 247 LWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVN 306
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G AL M + K D +++ G L ACSHAGL+ EG +F M++ + ++EH
Sbjct: 307 GLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEH 366
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
YGC+VDL RA L+ A+ +++ MP +P E ILG+LL+AC ++ + + V
Sbjct: 367 YGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVM------- 419
Query: 404 NYL------SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
NYL D ++ +N+YA+ G+W+ AN+ R M + GI K G S IE++ S HKF
Sbjct: 420 NYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSSIHKF 479
Query: 458 LAGGIGH 464
++G H
Sbjct: 480 VSGDKSH 486
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 149/324 (45%), Gaps = 50/324 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAG---ILSSSCIGLMLHGQTIKTGF-CGHVYVQTALLKMYG 56
M+E + ++ +F LL A SS G +H K G V V TAL+ MY
Sbjct: 82 MREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYA 141
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
++ A F++M +++++WN+M+D + G+ + A+++ D +P+K+ S+ +I G
Sbjct: 142 KCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGG 201
Query: 117 YARIGKIHSARYIFDKVP----AKDVVS------------------W------------- 141
+ + A F ++ A D V+ W
Sbjct: 202 FVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNN 261
Query: 142 ----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
NSLI Y+ G ++ A ++F +M + +++WN+++ G+ + L E + F+ M+
Sbjct: 262 VKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQE 321
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARI--HVYATDNGLASNPHATTALIDMYAKCGSI 255
KPD ++ T L AC++ G + G RI H+ L H L+D+Y++ G +
Sbjct: 322 EGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEH-YGCLVDLYSRAGRL 380
Query: 256 EQSLEVFYKSQVKDVFCWNAMILG 279
E++L V +K N +ILG
Sbjct: 381 EEALNVLKNMPMKP----NEVILG 400
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 38/236 (16%)
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL---GSLETGAR 225
+++W T + Y +S ++ F +M+ ++P+++T ++LSACA+ S+ G
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115
Query: 226 IHVYATDNGLASNP-HATTALIDMYAKCGSIEQ--------------------------- 257
IH + GL N TALIDMYAKCG +E
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175
Query: 258 ----SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+L+VF VK+ W A+I G Y AL+ EM S V D +T I +++
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235
Query: 314 ACSHAGLVQEGCELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
AC++ G + G + M +DF K+ + ++D+ R +D A ++ + MP
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSN--SLIDMYSRCGCIDLARQVFDRMP 289
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 122/264 (46%), Gaps = 25/264 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + ++ A L + +GL +H + F +V V +L+ MY C
Sbjct: 218 MQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGC 277
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
ID A +VF++MP++ +++WNS++ FA G D A+ + M + D S+ +
Sbjct: 278 IDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMA 337
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ G I IF+ + + + L+ Y+ AG +E+A + K M +K
Sbjct: 338 CSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKP--- 394
Query: 172 WNTMVTGYL----RSQ----LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
N ++ G L R+Q L V++ E+ +G +Y+ ++++ +A +G +
Sbjct: 395 -NEVILGSLLAACRTQGNIGLAENVMNYLIELDSGG-DSNYVLLSNIYAA---VGKWDGA 449
Query: 224 ARIHVYATDNGLASNPHATTALID 247
++ + G+ P ++ ID
Sbjct: 450 NKVRRRMKERGIQKKPGFSSIEID 473
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/502 (31%), Positives = 262/502 (52%), Gaps = 39/502 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + + PL+ K+ + +SSC G +H + G G V+V TAL+ Y
Sbjct: 110 MHRKGAYVPSGCVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGD 169
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A VF++MP KD I N ++ ++ G +D A +L D M + S+N MI+ YA
Sbjct: 170 MESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHG 229
Query: 121 GKIHSARYIFDKVPA--------------------------------------KDVVSWN 142
G+ A +FD++ + ++V+
Sbjct: 230 GEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHT 289
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+L+ Y ++ A F +M ++V+ W+TM+ GY ++ +E ++LF+ MKA + +P
Sbjct: 290 ALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRP 349
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+ +T+ V+SACA LGS E +I YA + L + +ALIDMY +CG + ++ VF
Sbjct: 350 NEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVF 409
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ + K V WN+MI GLA++G+ A+ L +M ++ V+ ++ITF+ LL+AC+HAGLV
Sbjct: 410 SRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVD 469
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
+G F M+++ V+ ++EH C+VDLL ++ L A + I M EP I LLS+
Sbjct: 470 QGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSS 529
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C H D+E+ ++ + A S ++ +N+YA G W +A R++M + K
Sbjct: 530 CRAHADVELAKLASRKLLAMEPDNS-SIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKL 588
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
+ S I+++G HKFL H
Sbjct: 589 SAYSWIKLDGEVHKFLVQDTYH 610
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 248/462 (53%), Gaps = 43/462 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------- 96
++Y +L Y L +++A K+F++M EKD+++WN+++ A+A G + A+
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187
Query: 97 -------------------KLIDLMPLKDVTSFNIMISG--------------YARIGKI 123
KL +L K V ++++G YA+ G++
Sbjct: 188 RLDMGFNAFSFAGVLILCVKLKELQLAKQVHG-QVLVAGFLSNLVLSSSIVDAYAKCGEM 246
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
AR +FD++ KD+ +W +++ Y G+M A E+F +M KN ++W+ +++GY R+
Sbjct: 247 RCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNS 306
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
L E +D F +M + P+ T +S L ACA++ +L+ G ++H Y N +
Sbjct: 307 LGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVS 366
Query: 244 ALIDMYAKCGSIEQSLEVFY-KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
+LIDMY+KCG +E S VF+ +DV WN MI LA +G+G A+++ +M +S +K
Sbjct: 367 SLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLK 426
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
D ITFI +LSACSH+GLVQEG F M D GV EHY C++DLLGRA +
Sbjct: 427 PDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVN 486
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
+E M +P + + ALL C IH ++E+G +VA+ V + S + A+LYA G
Sbjct: 487 ELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERV-IELKPQSSAAYVSLASLYAFLG 545
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+WE + R +M++ I K G S I+V H F+A H
Sbjct: 546 KWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLH 587
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 119/228 (52%), Gaps = 5/228 (2%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y G+ AR +FDK+ +++ SWN ++ Y G++ A ++F +M+ K+V+
Sbjct: 102 NHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVV 161
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WNT+V Y + + E + L+ + + ++ + + VL C L L+ ++H
Sbjct: 162 SWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQV 221
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G SN +++++D YAKCG + + +F + VKD+ W ++ G A G +A
Sbjct: 222 LVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSAS 281
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
+L +M + + +++ L+S + L E + F++M K FG+
Sbjct: 282 ELFHQMPEK----NPVSWSALISGYARNSLGHEALDYFTKMMK-FGIN 324
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 48/291 (16%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMY---GSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
+HGQ + GF ++ + ++++ Y G +RC A +F++M KDI AW +++ +A
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRC---ARTLFDEMLVKDIHAWTTIVSGYAK 273
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV------PAK------ 136
G M+ A +L MP K+ S++ +ISGYAR H A F K+ P +
Sbjct: 274 WGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSC 333
Query: 137 ---------------------------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
+ + +SLI Y+ G +E + +F M K +
Sbjct: 334 LCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQD 393
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+ WNTM++ ++ + + +F++M +KPD +T +LSAC++ G ++ G R
Sbjct: 394 VVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFK 453
Query: 229 YAT-DNGLASNPHATTALIDMYAKCGS-IEQSLEVFYKSQVKDVFCWNAMI 277
T D+G+ + + LID+ + G +E E+ S D W+A++
Sbjct: 454 AMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALL 504
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 118/265 (44%), Gaps = 43/265 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G++ + Y+F L A +++ G +HG I+T F + V ++L+ MY
Sbjct: 318 MMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGM 377
Query: 61 IDDAFKVFEKMPEK-DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
++ + VF M K D++ WN+M+ A A G + AM++ FN M+ +
Sbjct: 378 LEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQM-----------FNDMVESGLK 426
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI-----TWNT 174
D +++ ++ A +++G +++ FK M + + ++
Sbjct: 427 ----------------PDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSC 470
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ R+ ++E+V+ + M + KPD +++L C ++E G ++ +
Sbjct: 471 LIDLLGRAGCFVELVNELENM---SCKPDDRVWSALLGVCRIHNNIELGRKV----AERV 523
Query: 235 LASNPHATTA---LIDMYAKCGSIE 256
+ P ++ A L +YA G E
Sbjct: 524 IELKPQSSAAYVSLASLYAFLGKWE 548
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 219/356 (61%), Gaps = 3/356 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y G + +AR +FD++ KDV+SW S+++AYT +G+M A E+F + VK+++
Sbjct: 181 NSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMV 240
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
W MVTGY ++ + ++ +++FD M + D +++T +SACA LG+L A + A
Sbjct: 241 AWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIA 300
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G +N + L+DMYAKCG I+++ +VFY Q K+V+ +++MI GLA HG A+
Sbjct: 301 ERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAI 360
Query: 291 KLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L EM N + V+ + +TFIG+L+ACSHAG+V EG F++M+ +G+ +HY CMVD
Sbjct: 361 ALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVD 420
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA L+D A++L+ +M P + GALL AC IH EI VA+ + K S G
Sbjct: 421 LLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLF-KLEPESIG 479
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE-VNGSYHKFLAGGIGH 464
++ +N+ AS G+WEE ++ R +M + K S+ E +G H+F AG H
Sbjct: 480 NYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAH 535
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 42/287 (14%)
Query: 40 GFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI 99
GF H +V+ +L+ Y + + A KVF++M EKD+I+W S++ A+ G M A ++
Sbjct: 172 GFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVF 231
Query: 100 DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP------------------------- 134
P+KD+ ++ M++GYA+ A +FD++
Sbjct: 232 GRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALR 291
Query: 135 --------------AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+VV + L+ Y G +++A ++F M KNV T+++M+ G
Sbjct: 292 RAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLA 351
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN-GLASN 238
E + LF EM NV+P+++T VL+AC++ G + G D G+ +
Sbjct: 352 SHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPS 411
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDV-FCWNAMILGLALHG 284
++D+ + G ++++L++ V W A++ +HG
Sbjct: 412 ADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHG 458
>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
Length = 853
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/405 (37%), Positives = 221/405 (54%), Gaps = 19/405 (4%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A F +MP KD +WN+M+ +A G+M+ A L M K+ S+N MISGY
Sbjct: 140 FEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVLFYSMMEKNEVSWNAMISGYIEC 199
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGY 179
G + A + F P + VV+W ++I Y A ++E A MFK M VK N++TWN M++GY
Sbjct: 200 GDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGY 259
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ + + + LF M ++P+ ++S L C+ L +L G +IH
Sbjct: 260 VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQ----------- 308
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
I MY KCG + + ++F + KDV WNAMI G A HG AL L EM DS
Sbjct: 309 ------IVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDS 362
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K D ITF+ +L AC+HAGLV G F M +D+ V + +HY CMVDLLGRA ++
Sbjct: 363 KTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEE 422
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A++LI +MPF P ++ G LL AC +H+++E+ + A+ + + G + + AN+YA
Sbjct: 423 ALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLELDPRNAAGYVQL-ANIYA 481
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S WE+ R R M ++ +VK G S IE+ H F + H
Sbjct: 482 SKNLWEDVARVRKRMKESNVVKVPGYSWIEIRNKIHHFRSSDRIH 526
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 10/246 (4%)
Query: 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR-IGKIHSARYIFD 131
E I N ++ G +D A+ + M K+ S+N ++ G ++ ++ A +FD
Sbjct: 58 EDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFD 117
Query: 132 KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
++P D S+N ++ Y G EKA F +M K+ +WNTM+TGY R + L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVL 177
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
F M N ++ +++S G LE A A G+ A TA+I Y K
Sbjct: 178 FYSMMEKN----EVSWNAMISGYIECGDLEKAAHFFKAAPFRGVV----AWTAMITGYMK 229
Query: 252 CGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
+E + +F V K++ WNAMI G + LKL M + ++ +
Sbjct: 230 AKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSS 289
Query: 311 LLSACS 316
L CS
Sbjct: 290 ALLGCS 295
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ ++ L LS+ C+G +H Q + CG
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALCLGRQIH-QIVMYCKCGE---------------- 317
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM 102
+ DA+K+FE M +KD++AWN+M+ +A G + A+ L M
Sbjct: 318 LGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEM 359
>gi|115474919|ref|NP_001061056.1| Os08g0162200 [Oryza sativa Japonica Group]
gi|28564637|dbj|BAC57819.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623025|dbj|BAF22970.1| Os08g0162200 [Oryza sativa Japonica Group]
gi|125602282|gb|EAZ41607.1| hypothetical protein OsJ_26139 [Oryza sativa Japonica Group]
gi|215741371|dbj|BAG97866.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 535
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 237/391 (60%), Gaps = 4/391 (1%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A +F++MP +D+++WNSM+ A G +D A++L D MP ++ S+N ++ GY G +
Sbjct: 146 ARALFDRMPVRDVVSWNSMVAGLAKAGHLDAAIELFDKMPERNAASWNAVMCGYIAQGDL 205
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML-VKNVITWNTMVTGYLRS 182
AR +F+++P + VSW ++I Y N+G++ AGE+F++M K++ WN M+ Y ++
Sbjct: 206 AQARELFEQMPVRSNVSWITMISGYANSGDVHAAGELFERMENKKDLYAWNAMIACYAKN 265
Query: 183 QLYIEVVDLFDEMKAGNV--KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
E + +F+ M +V P+ T +SV+SAC+ LG L G + G+ + H
Sbjct: 266 GCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRFGLWAESFMGSVGIELDDH 325
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
TAL+D++ K G I+++ ++F ++DV ++A+I+G ++G A+ L EM+D+
Sbjct: 326 LRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSYSAIIVGCGMNGKFNEAVSLFKEMSDAK 385
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ + +TF+GLLSA S+AGL++E F+ M + + ++ +EHY MVDLLGR+ LD A
Sbjct: 386 ISPNAVTFVGLLSAYSNAGLMEEARACFASMTEKYKISPSMEHYTIMVDLLGRSGKLDEA 445
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+LI MP +P SI GALL AC +H ++E+G+ VA C + G ++ N+Y+
Sbjct: 446 YQLIMQMPMKPDASIWGALLLACRLHNNVELGEIVASK-CFELEPGESGYYILLGNIYSE 504
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
+WE+ R R +M + G+ K GSS ++ +
Sbjct: 505 ANKWEKVKRLRKIMAERGLNKMPGSSWVQAS 535
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 22/264 (8%)
Query: 117 YARIGKIHSARYIFDKVPAKD----------VVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
YAR+ A + D+ P + +VS NSL+ + +G++ A +F +M V
Sbjct: 96 YARLPDPSRAHSLLDETPPRPPRGRAGAHSFLVSRNSLLASLLRSGDLAAARALFDRMPV 155
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
++V++WN+MV G ++ ++LFD+M N + +V+ G L A+
Sbjct: 156 RDVVSWNSMVAGLAKAGHLDAAIELFDKMPERNAA----SWNAVMCGYIAQGDL---AQA 208
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGY 285
+ SN T +I YA G + + E+F + KD++ WNAMI A +G
Sbjct: 209 RELFEQMPVRSNVSWIT-MISGYANSGDVHAAGELFERMENKKDLYAWNAMIACYAKNGC 267
Query: 286 GYAALKLLGEM--NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
AL + M V ++ TF ++SACS G ++ G S M G+
Sbjct: 268 AREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRFGLWAESFM-GSVGIELDDHL 326
Query: 344 YGCMVDLLGRARLLDRAIELIEAM 367
+VDL ++ +DRA +L +
Sbjct: 327 RTALVDLHTKSGRIDRAFDLFRGL 350
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 35/183 (19%)
Query: 46 YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK 105
+++TAL+ ++ ID AF +F + +D++++++++ G+ + A+ L K
Sbjct: 325 HLRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSYSAIIVGCGMNGKFNEAVSL-----FK 379
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
+++ I + + V++ L+ AY+NAG ME+A F M
Sbjct: 380 EMSDAKI----------------------SPNAVTFVGLLSAYSNAGLMEEARACFASMT 417
Query: 166 VKNVIT-----WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
K I+ + MV RS E L +M +KPD ++L AC ++
Sbjct: 418 EKYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMP---MKPDASIWGALLLACRLHNNV 474
Query: 221 ETG 223
E G
Sbjct: 475 ELG 477
>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
gi|219885333|gb|ACL53041.1| unknown [Zea mays]
gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
Length = 528
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 136/392 (34%), Positives = 232/392 (59%), Gaps = 3/392 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A +FE MP +D+++WNSM+ A G +D A+++ D MP +V S+N ++SG+
Sbjct: 137 IPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALVSGFMAQ 196
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A+ +F+++P ++ VSW ++I Y AG+++ A +F +M K++ WN M++ Y
Sbjct: 197 GHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSKDLYAWNAMISCYA 256
Query: 181 RSQLYIEVVDLFDEMKAGN--VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
++ E + +F+ M + V P+ T +SV+SAC+ LG L G + + G+ +
Sbjct: 257 QNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVENFMGYVGVDLD 316
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
H TAL+D+Y K G ++++ ++F + +DV ++AMI+G +HG A+ L EM+
Sbjct: 317 DHLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEMSK 376
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+ + + +TF+GLLSA SHAGL++E F+ M + + +EHY MVD+LGR L+
Sbjct: 377 ARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRINPSMEHYTIMVDILGRCGKLE 436
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
A +L+ +P P S+ GALL AC +H ++E+G+ VA C + G ++ N+Y
Sbjct: 437 EAFQLVMQIPVCPDASVWGALLLACRLHNNIELGEVVASK-CFELEPQESGYYILLGNIY 495
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
A +W++ R MM + G+ KT GSS + V
Sbjct: 496 AQAKKWDKVKGLRKMMAERGLSKTPGSSWVHV 527
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 46 YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL- 104
+++TAL+ +Y +D AF +F + +D++++++M+ G+++ A+ L M
Sbjct: 318 HLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEMSKA 377
Query: 105 ---KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT-------NAGEM 154
+ +F ++S Y+ G + AR F + ++ + N + YT G++
Sbjct: 378 RIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRI--NPSMEHYTIMVDILGRCGKL 435
Query: 155 EKAGEMFKKMLV-KNVITWNTMV 176
E+A ++ ++ V + W ++
Sbjct: 436 EEAFQLVMQIPVCPDASVWGALL 458
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 162/470 (34%), Positives = 247/470 (52%), Gaps = 39/470 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G D Y++P +LKA+ S +GL +HG +K G ++YV L+ MYG
Sbjct: 111 MYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGK--- 167
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
C + A +++D +P +DV S+N M+S YA+
Sbjct: 168 ----------------------------CKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQN 199
Query: 121 GKIHSARYIFDKVPAKDV----VSWNSLILAYTN--AGEMEKAGEMFKKMLVKNVITWNT 174
G+ + A + ++ A ++ + SL+ A TN + + EMF K+ K+VI+WN
Sbjct: 200 GRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNV 259
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ Y+ + + E V L+ +M+A V+PD +++ SVL A +L +L G R+H +A
Sbjct: 260 MIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKK 319
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L N ALIDMYAKCG + + VF + Q +DV W ++I G G A+ +
Sbjct: 320 LLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFA 379
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
EM +S + D I F+ +L+ACSHAGL+ +G F+ M + G+T KLEH+ C+VDLLGRA
Sbjct: 380 EMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLM-AECGITPKLEHFACVVDLLGRA 438
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
+D A I MP EP E + G LLSAC ++ ++ IG A + N G ++
Sbjct: 439 GKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLM-LNPEHSGYYVLL 497
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G+W + R++M GI K G S +E+N H FLAG H
Sbjct: 498 SNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSH 547
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 153/343 (44%), Gaps = 23/343 (6%)
Query: 123 IHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
I++ + + KV + WN L+ Y GE A +F ++ KNV+ +N M+
Sbjct: 34 INTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIR 93
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
Y+ + LY + + ++ M PD T VL A + SL G +IH GL
Sbjct: 94 SYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDL 153
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
N + LI MY KC S++++ +V + +DV WN+M+ A +G AL+L EM
Sbjct: 154 NLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREME 213
Query: 298 DSCVKADDITFIGLLSACSH--AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+K +D T LL A ++ + V E+F ++ K ++ + M+ +
Sbjct: 214 ALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVIS-----WNVMIAMYVNNS 268
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQD---LEIGDRVAKMVCAK---SNYLSDG 409
+ A+ L M E + +++S + D L +G RV K K N L +
Sbjct: 269 MPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLEN 328
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
L+ ++YA CG +A N M +V + +S+I G
Sbjct: 329 ALI---DMYAKCGCLRDARAVFNQMQFRDVV--SWTSIISAYG 366
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 117/293 (39%), Gaps = 77/293 (26%)
Query: 66 KVFEKMPEKDIIAWNS-----MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR- 119
K+ K+ + WN ++ +A+CG+ A + D + K+V FN+MI Y
Sbjct: 39 KLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNN 98
Query: 120 ---------IGKIHSARYIFD--------KVPAKDVVSW--------------------- 141
+++ ++ D K ++ W
Sbjct: 99 HLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVG 158
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N LI Y +++A ++ ++ ++V++WN+MV+ Y ++ + + ++L EM+A N+K
Sbjct: 159 NGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLK 218
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ T+ S+L A N S DN L Y K E+
Sbjct: 219 PNDCTMASLLPAVTNTTS------------DNVL-------------YVK--------EM 245
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
F K K V WN MI + A+ L +M + V+ D ++ + +L A
Sbjct: 246 FLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPA 298
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/377 (39%), Positives = 225/377 (59%), Gaps = 21/377 (5%)
Query: 100 DLMPLKDVTSFNIM-----ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEM 154
D++P K TSF+++ ISG A++G+ + I D++ L+ Y G +
Sbjct: 25 DVLPSK--TSFSLILRSCAISGEAQLGEAFHCQ-IMKMGFEYDMILQTGLLDFYAKHGYV 81
Query: 155 EKAGEMFKKMLVKNV--ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
E+A +F M +N +TWNTM++ Y++ + + +F +M++ NVKP +T+ S+LS
Sbjct: 82 EEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLS 141
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
ACA+LG+L+ G IH Y L + ALIDMY KCG++E +++VF+ K++FC
Sbjct: 142 ACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFC 201
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WN++I+GL ++G G A+ M +K D +TF+G+LS CSH+GL+ G FS M
Sbjct: 202 WNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEML 261
Query: 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG 392
+G+ +EHYGCMVDLLGRA L A+ELI AMP +P +LG+LL AC IH+D ++G
Sbjct: 262 GVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLG 321
Query: 393 DRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++V + + C NY+ +NLYAS +W++ N R +M G+ KT G S
Sbjct: 322 EQVTQQLLELDPCDGGNYV------FLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSS 375
Query: 448 IEVNGSYHKFLAGGIGH 464
IEVN H+F+AG H
Sbjct: 376 IEVNNIVHEFVAGDTSH 392
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 139/283 (49%), Gaps = 23/283 (8%)
Query: 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM 71
SF L+L++ I + +G H Q +K GF + +QT LL Y +++A +F+ M
Sbjct: 32 SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNM 91
Query: 72 PEK--DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYARIGKIHS 125
E+ + + WN+M+ A+ CG+ A+ + M ++V + ++S A +G +
Sbjct: 92 TERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDM 151
Query: 126 ARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
+I + K DVV N+LI Y G +E A ++F + KN+ WN+++ G
Sbjct: 152 GEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGM 211
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-----IHVYATDNGLA 236
+ E + F M+ +KPD +T +LS C++ G L G R + VY + G+
Sbjct: 212 NGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVE 271
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
++D+ + G ++++LE+ +K N+M+LG
Sbjct: 272 H----YGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 306
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 2/152 (1%)
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ L S + + + + M +V P + + +L +CA G + G H G
Sbjct: 1 MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVF--YKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ T L+D YAK G +E++ +F + + WN MI G A+ +
Sbjct: 61 FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISM 120
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+M VK ++T + LLSAC+H G + G
Sbjct: 121 FQQMQSENVKPTEVTMVSLLSACAHLGALDMG 152
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 164/499 (32%), Positives = 246/499 (49%), Gaps = 44/499 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D + +L A L G +HG +K G V+V TAL+ +Y + C+ +A
Sbjct: 338 GVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREA 397
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----------------------DL 101
VF+ MP ++++ WNS+ + +CG + + DL
Sbjct: 398 QTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDL 457
Query: 102 MPLK----------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
LK DV N ++S YA+ + A+ +FD +P ++V SWN ++
Sbjct: 458 QDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGIL 517
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNV----ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
AY E EK MF +M V ITW+ ++ G +++ E +++F +M+ K
Sbjct: 518 TAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFK 577
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD T+ S+L AC+ L G IH Y + + T AL+DMYAKCG + S V
Sbjct: 578 PDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNV 637
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F +KDVF WN MI +HG G AL L +M S VK D TF +LSACSH+ LV
Sbjct: 638 FDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLV 697
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+EG ++F+ M +D V + EHY C+VD+ RA L+ A I+ MP EPT A L+
Sbjct: 698 EEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLA 757
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
C +++++E+ AK + S + +F N+ + W EA++ R +M + GI K
Sbjct: 758 GCRVYKNVELAKISAKKLFEIDPNGSANYVTLF-NILVTAKLWSEASKIRKLMKERGITK 816
Query: 442 TAGSSVIEVNGSYHKFLAG 460
T G S V H F+AG
Sbjct: 817 TPGCSWFHVGNRVHTFVAG 835
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/429 (25%), Positives = 197/429 (45%), Gaps = 47/429 (10%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D + +L A L G +HG +K G +V+V AL+ +Y S C+ +A
Sbjct: 237 GVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREA 296
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARI 120
VF+ MP +++I WNS+ + +CG + + M L D + + ++ +++
Sbjct: 297 QAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQL 356
Query: 121 GKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ S + I +DV +L+ Y N + +A +F M +NV+TWN++
Sbjct: 357 KDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLS 416
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+ Y+ + +++F EM VKPD +T+ S+L AC++L L++G IH +A +G+
Sbjct: 417 SCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMV 476
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ AL+ +YAKC + ++ VF ++V WN ++ + L + +M
Sbjct: 477 EDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQM 536
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
N VKAD+IT+ ++ C ++E E+F +M
Sbjct: 537 NRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKM------------------------- 571
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM--- 413
+ M F+P E+ + ++L AC + + L +G + C + D +L
Sbjct: 572 --------QTMGFKPDETTIYSILRACSLSECLRMGKEIH---CYVFRHWKDWDLARTNA 620
Query: 414 FANLYASCG 422
++YA CG
Sbjct: 621 LVDMYAKCG 629
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 155/328 (47%), Gaps = 8/328 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D F + KA + H + G V + A + YG +C++ A
Sbjct: 35 GIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGA 94
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS----GYARI 120
+VF+ + +D++ WNS+ + +CG + + M L V + + +S G + +
Sbjct: 95 RRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDL 154
Query: 121 GKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ S + I V +DV ++ + Y + +A +F M ++V+TWN++
Sbjct: 155 QDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLS 214
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+ Y+ + +++F EM VKPD +TV+ +LSAC++L L++G IH +A +G+
Sbjct: 215 SCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMV 274
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
N + AL+++Y C + ++ VF ++V WN++ G+ L + EM
Sbjct: 275 ENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREM 334
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEG 324
+ VK D + +L ACS ++ G
Sbjct: 335 GLNGVKPDPMAMSSILPACSQLKDLKSG 362
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 3/200 (1%)
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E + ++ +A +KPD +V ACA + H AT G+ S+ A I
Sbjct: 23 EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
Y KC +E + VF +DV WN++ G+ L + +M + VKA+ +
Sbjct: 83 HAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPL 142
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
T +L CS ++ G E+ + + G+ + V+ + + A + +
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRH-GMVEDVFVSSAFVNFYAKCLCVREAQTVFDL 201
Query: 367 MPFEPTESILGALLSACVIH 386
MP + + LS+C ++
Sbjct: 202 MPHR--DVVTWNSLSSCYVN 219
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 107/253 (42%), Gaps = 19/253 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ +G D + +L+A + +G +H + + AL+ MY
Sbjct: 571 MQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGG 630
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
+ + VF+ MP KD+ +WN+M+ A G A+ L + M L D +F ++S
Sbjct: 631 LSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSA 690
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ + IF+ + +V + ++ Y+ AG +E+A ++M ++ I
Sbjct: 691 CSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAI 750
Query: 171 TWNTMVTG---YLRSQL-YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
W + G Y +L I LF+ G+ +Y+T+ ++L A L S ++I
Sbjct: 751 AWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSA--NYVTLFNILVT-AKLWS--EASKI 805
Query: 227 HVYATDNGLASNP 239
+ G+ P
Sbjct: 806 RKLMKERGITKTP 818
>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
Length = 659
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 162/486 (33%), Positives = 261/486 (53%), Gaps = 31/486 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + GV D +++P +L+A +G +H G G+++ Q AL+ MY
Sbjct: 141 MGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGD 200
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PL---------- 104
+ A KVF+ M ++D+++WNSM+ ++A+ GQ AM+L M P+
Sbjct: 201 LASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMVRGG 260
Query: 105 KDVTSFNIMIS-------GYARIGK-IH--SARYIFDKVPAKDVVSWNSLILAYTNAGEM 154
+V ++I G+ R+GK IH + R D+V + VS N+LI Y +M
Sbjct: 261 AEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQV---ESVS-NALITMYARCKDM 316
Query: 155 EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
E A +F+ + V+TWNTM++ + S E +F EM VKP+Y+TV + L+ C
Sbjct: 317 ECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALC 376
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
A + +L+ G +H + +G +LIDMY+K G + + VF D+ +
Sbjct: 377 ARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYT 436
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+MI G + G G AL+L +M DS +K D I + +LSACSH+GLV EG ELF++M
Sbjct: 437 SMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVIS 496
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
+G+ ++EHY CM+DL RA LL++A E+++ PF PT ++ AL+ AC ++EIG+R
Sbjct: 497 YGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGER 556
Query: 395 VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSY 454
A+ + + G ++ AN+YA+ G W+E R +M D G+ K G + ++ +
Sbjct: 557 AARKLLEMRTE-NAGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLGNGF 615
Query: 455 HKFLAG 460
FL G
Sbjct: 616 TPFLVG 621
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
+ EM V PD T SVL ACA L G +H++A G+ N AL+ MYAK
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAK 197
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA-------- 303
CG + + +VF +DV WN+MI A G A++L M D +
Sbjct: 198 CGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMV 257
Query: 304 ------DDITFIGLLSACSHAGLVQEGCEL 327
D +T + L+ACS G ++ G E+
Sbjct: 258 RGGAEVDYVTLVIGLNACSRVGWLRLGKEI 287
>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 649
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 238/419 (56%), Gaps = 16/419 (3%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMP-------------EKDIIAWNSMLDAFASCGQ 91
V+ L+ YG +++A ++F+ +P +++++WNSM+ + G
Sbjct: 233 VHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGD 292
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
+ A +L D M +D S+N +IS Y +I + A +F ++P+ DV+SWNS+I
Sbjct: 293 IVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKLFREMPSPDVLSWNSIISGLAQK 352
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G++ A + F++M KN+I+WNT++ GY +++ Y + LF EM+ +PD T++SV+
Sbjct: 353 GDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVI 412
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDV 270
S L L G ++H T L +P +LI MY++CG+I + VF + ++ KDV
Sbjct: 413 SVSTGLVDLYLGKQLHQLVTKTVLPDSP-INNSLITMYSRCGAIVDACTVFNEIKLYKDV 471
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
WNAMI G A HG AL+L M + ITFI +L+AC+HAGLV+EG F
Sbjct: 472 ITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKS 531
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390
M D+G+ ++EH+ +VD+LGR L A++LI MPF+P +++ GALL AC +H ++E
Sbjct: 532 MINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLGACRVHNNVE 591
Query: 391 IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+ VA + S ++ N+YA+ GQW++A R +M + + K AG S ++
Sbjct: 592 LA-LVAADALIRLEPESSAPYVLLYNMYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 649
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 153/328 (46%), Gaps = 35/328 (10%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
I +A +F+ M +D + WNSM+ + ++ A +L D MP +DV S+N+++SGY
Sbjct: 54 ISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYFSC 113
Query: 118 --ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+R + R +F+ +P +D VSWN++I Y G M++A ++F M N +++N +
Sbjct: 114 CGSRF--VEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAV 171
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI--HVYATDN 233
+TG+L + V F M + D ++ +++S G L+ A I D+
Sbjct: 172 ITGFLLNGDVESAVGFFRTMP----EHDSTSLCALISGLVRNGELDLAAGILRECGNGDD 227
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVF-------------YKSQVKDVFCWNAMILGL 280
G HA LI Y + G +E++ +F + ++V WN+M++
Sbjct: 228 GKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCY 287
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
G + E+ D V+ D+ ++ L+S ++E +LF M +
Sbjct: 288 VKAG----DIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKLFREMP-----SPD 338
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ + ++ L + L+ A + E MP
Sbjct: 339 VLSWNSIISGLAQKGDLNLAKDFFERMP 366
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 174/392 (44%), Gaps = 29/392 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA-FASCGQ--MDHAMKLIDLMPLK 105
+++ Y R I A ++F++MP +D+++WN ++ F+ CG ++ +L +LMP +
Sbjct: 73 NSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYFSCCGSRFVEEGRRLFELMPQR 132
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D S+N +ISGYA+ G++ A +F+ +P + VS+N++I + G++E A F+ M
Sbjct: 133 DCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMP 192
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT--VTSVLSACANLGSLETG 223
+ + +++G +R+ + E G+ D L ++++ G +E
Sbjct: 193 EHDSTSLCALISGLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEA 252
Query: 224 ARI------HVYATDNG---LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
R+ + G N + +++ Y K G I + E+F + +D WN
Sbjct: 253 RRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWN 312
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+I A KL EM D +++ ++S + G + + F RM
Sbjct: 313 TLISCYVQISNMEEASKLFREM----PSPDVLSWNSIISGLAQKGDLNLAKDFFERMPH- 367
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEI 391
+ L + ++ + AI+L M E P + L +++S DL +
Sbjct: 368 ----KNLISWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYL 423
Query: 392 GDRVAKMVCAKSNYLSDGEL-MMFANLYASCG 422
G ++ ++V L D + +Y+ CG
Sbjct: 424 GKQLHQLVT--KTVLPDSPINNSLITMYSRCG 453
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 15/224 (6%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +S R G+I AR +FD + +D V+WNS+I Y E+ +A ++F +M ++V+
Sbjct: 42 NKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVV 101
Query: 171 TWNTMVTGYLR---SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI- 226
+WN +V+GY S+ E LF+ M + D ++ +V+S A G ++ ++
Sbjct: 102 SWNLIVSGYFSCCGSRFVEEGRRLFELMP----QRDCVSWNTVISGYAKNGRMDQALKLF 157
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+ N ++ N T L++ G +E ++ F D A+I GL +G
Sbjct: 158 NAMPEHNAVSYNAVITGFLLN-----GDVESAVGFFRTMPEHDSTSLCALISGLVRNGEL 212
Query: 287 YAALKLLGEMNDSCVKADDIT--FIGLLSACSHAGLVQEGCELF 328
A +L E + DD+ + L++ G V+E LF
Sbjct: 213 DLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLF 256
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 43/462 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM------- 96
++Y +L Y L +++A K+F++M EKD+++WN+++ A+A G + A+
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187
Query: 97 -------------------KLIDLMPLKDVTSFNIMISG--------------YARIGKI 123
KL +L K V ++++G Y++ G++
Sbjct: 188 RLDMGFNAFSFAGVLILCVKLKELQLAKQVHG-QVLVAGFLSNLVLSSSIVDAYSKCGEM 246
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
AR +FD++ KD+ +W +++ Y G+M A E+F +M KN ++W+ +++GY R+
Sbjct: 247 RCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNS 306
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
L E +D F +M + P+ T +S L ACA++ +L+ G ++H Y N +
Sbjct: 307 LGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVS 366
Query: 244 ALIDMYAKCGSIEQSLEVFY-KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
+LIDMY+KCG +E S VF+ +DV WN MI LA +G+G A+++ +M +S +K
Sbjct: 367 SLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLK 426
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
D ITFI +LSACSH+GLVQEG F M D GV EHY C++DLLGRA +
Sbjct: 427 PDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVN 486
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
+E M +P + + ALL C IH ++E+G +VA+ V + S + A+LYA G
Sbjct: 487 ELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERV-IELKPQSSAAYVSLASLYAFLG 545
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+WE + R +M++ I K G S I+V H F+A H
Sbjct: 546 KWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLH 587
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 119/228 (52%), Gaps = 5/228 (2%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y G+ AR +FDK+ +++ SWN ++ Y G++ A ++F +M+ K+V+
Sbjct: 102 NHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVV 161
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WNT+V Y + + E + L+ + + ++ + + VL C L L+ ++H
Sbjct: 162 SWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQV 221
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G SN +++++D Y+KCG + + +F + VKD+ W ++ G A G +A
Sbjct: 222 LVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSAS 281
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
+L +M + + +++ L+S + L E + F++M K FG+
Sbjct: 282 ELFHQMPEK----NPVSWSALISGYARNSLGHEALDYFTKMMK-FGIN 324
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 48/291 (16%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMY---GSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
+HGQ + GF ++ + ++++ Y G +RC A +F++M KDI AW +++ +A
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRC---ARTLFDEMLVKDIHAWTTIVSGYAK 273
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV------PAK------ 136
G M+ A +L MP K+ S++ +ISGYAR H A F K+ P +
Sbjct: 274 WGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSC 333
Query: 137 ---------------------------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
+ + +SLI Y+ G +E + +F M K +
Sbjct: 334 LCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQD 393
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+ WNTM++ ++ + + +F++M +KPD +T +LSAC++ G ++ G R
Sbjct: 394 VVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFK 453
Query: 229 YAT-DNGLASNPHATTALIDMYAKCGS-IEQSLEVFYKSQVKDVFCWNAMI 277
T D+G+ + LID+ + G +E E+ S D W+A++
Sbjct: 454 AMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALL 504
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 117/265 (44%), Gaps = 43/265 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G++ + Y+F L A +++ G +HG I+T F + V ++L+ MY
Sbjct: 318 MMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGM 377
Query: 61 IDDAFKVFEKMPEK-DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
++ + VF M K D++ WN+M+ A A G + AM++ FN M+ +
Sbjct: 378 LEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQM-----------FNDMVESGLK 426
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI-----TWNT 174
D +++ ++ A +++G +++ FK M + + +
Sbjct: 427 ----------------PDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYAC 470
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ R+ ++E+V+ + M + KPD +++L C ++E G ++ +
Sbjct: 471 LIDLLGRAGCFVELVNELENM---SCKPDDRVWSALLGVCRIHNNIELGRKV----AERV 523
Query: 235 LASNPHATTA---LIDMYAKCGSIE 256
+ P ++ A L +YA G E
Sbjct: 524 IELKPQSSAAYVSLASLYAFLGKWE 548
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 158/475 (33%), Positives = 252/475 (53%), Gaps = 13/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G D +SFP +LK+ LS G LH K G +V TAL+ MY
Sbjct: 44 MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGL 103
Query: 61 IDDAFKVFEKMPEKDIIA--WNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
+ DA KVFE+ P+ ++ +N+++ + + ++ A + M V+ ++ + G
Sbjct: 104 VADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLV 163
Query: 119 RIGKIHSARYIFDKVPAK--------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ + ++ + + +V NS I Y G +E +F +M VK +I
Sbjct: 164 PLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLI 223
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TWN +++GY ++ L +V++L+++MK+ V PD T+ SVLS+CA+LG+ + G +
Sbjct: 224 TWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLV 283
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
NG N + A I MYA+CG++ ++ VF VK + W AMI +HG G L
Sbjct: 284 ESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGL 343
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M ++ D F+ +LSACSH+GL +G ELF M++++ + EHY C+VDL
Sbjct: 344 MLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDL 403
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDG 409
LGRA LD A+E IE+MP EP ++ GALL AC IH+++++ + AK++ + N + G
Sbjct: 404 LGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNI--G 461
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+Y+ E R R MM + K G S +E G H FLAG H
Sbjct: 462 YYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSH 516
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 123/315 (39%), Gaps = 57/315 (18%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN + L+ E + L+ M PD + +L +CA+L +G ++H + T
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF--CWNAMILGLALHGYGYAA 289
G + P TALI MY KCG + + +VF ++ C+NA+I G + A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACS--------------------------------- 316
+ M ++ V D +T +GL+ C+
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200
Query: 317 --HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---P 371
G V+ G LF M + L + ++ + L +EL E M P
Sbjct: 201 YMKCGSVEAGRRLFDEMP-----VKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCP 255
Query: 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSN------YLSDGELMMFANLYASCGQWE 425
L ++LS+C +IG V K+V +SN ++S+ + M YA CG
Sbjct: 256 DPFTLVSVLSSCAHLGAKKIGHEVGKLV--ESNGFVPNVFVSNASISM----YARCGNLA 309
Query: 426 EANRWRNMMNDTGIV 440
+A ++M +V
Sbjct: 310 KARAVFDIMPVKSLV 324
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 216/354 (61%), Gaps = 2/354 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+I Y++ G+ AR +FD + K+ V+WN++I Y +G+++ A +MF KM +++I+W
Sbjct: 115 IIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISW 174
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+ G+++ E + F EM+ VKPDY+ + + L+AC NLG+L G +H Y
Sbjct: 175 TAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLS 234
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+N + +LID+Y +CG +E + +VFY + + V WN++I+G A +G + +L
Sbjct: 235 QDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVY 294
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M + K D +TF G L+ACSH GLV+EG F M+ D+ ++ ++EHYGC+VDL
Sbjct: 295 FRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYS 354
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIH-QDLEIGDRVAKMVCAKSNYLSDGEL 411
RA L+ A++L+++MP +P E ++G+LL+AC H ++ + +R+ K + N S
Sbjct: 355 RAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHL-TDLNVKSHSNY 413
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
++ +N+YA+ G+WE A++ R M G+ K G S IE++ H F+AG H+
Sbjct: 414 VILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHV 467
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 172/385 (44%), Gaps = 55/385 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSS--SCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGSLRCI 61
GV ++ +F LL G +S +G +LHG K G HV V TA++ MY
Sbjct: 66 GVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRF 125
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
A VF+ M +K+ + WN+M+D + GQ+D+A K+ D MP +D+ S+ MI+G+ + G
Sbjct: 126 KKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKG 185
Query: 122 KIHSA---------------------------------------RYIFDKVPAKDVVSWN 142
A RY+ + +V N
Sbjct: 186 YQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSN 245
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
SLI Y G +E A ++F M + V++WN+++ G+ + E + F +M+ KP
Sbjct: 246 SLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKP 305
Query: 203 DYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D +T T L+AC+++G +E G R + D ++ L+D+Y++ G +E +L++
Sbjct: 306 DAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKL 365
Query: 262 FYKSQVKDVFCWNAMILGLAL-----HGYGYA-ALKLLGEMNDSCVKADDITFIGLLSAC 315
+K N +++G L HG A +L+ + D VK+ I LS
Sbjct: 366 VQSMPMKP----NEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVI--LSNM 419
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRK 340
A EG R K G+ ++
Sbjct: 420 YAADGKWEGASKMRRKMKGLGLKKQ 444
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 34/192 (17%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL--GSLETGA 224
+ ++W + + R+ E F +M V+P+++T ++LS C + GS G
Sbjct: 34 ETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGD 93
Query: 225 RIHVYATDNGLASNP-HATTALIDMYAK-------------------------------C 252
+H YA GL N TA+I MY+K
Sbjct: 94 LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRS 153
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G ++ + ++F K +D+ W AMI G GY AL EM S VK D + I L
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 313 SACSHAGLVQEG 324
+AC++ G + G
Sbjct: 214 NACTNLGALSFG 225
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 110/266 (41%), Gaps = 45/266 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + L A L + GL +H + F +V V +L+ +Y C
Sbjct: 197 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGC 256
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
++ A +VF M ++ +++WNS++ FA+ G ++ M K D +F ++
Sbjct: 257 VEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTA 316
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ +G + F D + + + L+ Y+ AG +E A ++ + M
Sbjct: 317 CSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM------- 369
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG-SLETGARIHVYA 230
+KP+ + + S+L+AC+N G ++ R+ +
Sbjct: 370 ---------------------------PMKPNEVVIGSLLAACSNHGNNIVLAERLMKHL 402
Query: 231 TDNGLASNPHATTALIDMYAKCGSIE 256
TD + S+ + L +MYA G E
Sbjct: 403 TDLNVKSHSNYVI-LSNMYAADGKWE 427
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 216/350 (61%), Gaps = 2/350 (0%)
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y++ G+ AR IFD + K+ V+WN++I Y +G++ A ++F +ML +++I+W MV
Sbjct: 66 YSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMV 125
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G+++ + E + F EM+ VKPDY+ + + L+AC NLG+L G IH Y
Sbjct: 126 NGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFK 185
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+N + +LID+Y +CG +E + +VF K + + V WN++I+G A +G + +L +M
Sbjct: 186 NNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKM 245
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ K D +TF G L+ACSH GLV+EG F M++D+ ++ ++EHYGC+VDL RA
Sbjct: 246 QEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGR 305
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIH-QDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L+ A++++++MP +P E ++G+LL+AC H + + +R+ K + + N S ++ +
Sbjct: 306 LEDALKVVQSMPMKPNEVVIGSLLAACKNHGNNTLLAERLMKHL-SDLNVKSHSNYVILS 364
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
N+YA+ G+WE A++ R M G+ K G S IE++ H F+AG H+
Sbjct: 365 NMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDECTHVFMAGDSAHV 414
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 173/389 (44%), Gaps = 55/389 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSS--SCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGS 57
M+ GV ++ +F LL G S +G +LHG K G HV V TA+L MY
Sbjct: 9 MRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSK 68
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
A +F+ M +K+ + WN+M+D + GQ++ A+KL D M +D+ S+ M++G+
Sbjct: 69 RGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGF 128
Query: 118 ARIGKIHSA---------------------------------------RYIFDKVPAKDV 138
+ G A RY+ + +V
Sbjct: 129 VKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNV 188
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y G +E A ++F KM + V++WN+++ G+ + E + F +M+
Sbjct: 189 RVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEE 248
Query: 199 NVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KPD +T T L+AC+++G +E G R D ++ ++D+Y++ G +E
Sbjct: 249 GFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLED 308
Query: 258 SLEVFYKSQVKDVFCWNAMILGLAL-----HGYG-YAALKLLGEMNDSCVKADDITFIGL 311
+L+V +K N +++G L HG A +L+ ++D VK+ I
Sbjct: 309 ALKVVQSMPMKP----NEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYVI-- 362
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRK 340
LS A EG R K G+ ++
Sbjct: 363 LSNMYAADGKWEGASKMRRKMKGLGLKKQ 391
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 37/211 (17%)
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANL--GSLETGARIHVYATDNGL-------------- 235
F +M+ V+P+++T ++LS C + GS G +H YA GL
Sbjct: 6 FSDMRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGM 65
Query: 236 ------------------ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
N +ID Y + G + ++++F + +D+ W AM+
Sbjct: 66 YSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMV 125
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR-MEKDFG 336
G G+ AL EM S VK D + I L+AC++ G + G + M +DF
Sbjct: 126 NGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFK 185
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
++ + ++DL R ++ A ++ + M
Sbjct: 186 NNVRVSN--SLIDLYCRCGCVEFARQVFDKM 214
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 155/502 (30%), Positives = 261/502 (51%), Gaps = 39/502 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + + PL+ K+ + +SSC G +H + G G V+V TAL+ Y
Sbjct: 61 MHRKGAYVPSGCVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGD 120
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A F++MP KD I N ++ ++ G +D A +L D M + S+N MI+ YA
Sbjct: 121 MESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHG 180
Query: 121 GKIHSARYIFDKVPA--------------------------------------KDVVSWN 142
G+ A +FD++ + ++V+
Sbjct: 181 GEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHT 240
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
+L+ Y ++ A F +M ++V+ W+TM+ GY ++ +E ++LF+ MKA + +P
Sbjct: 241 ALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRP 300
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+ +T+ V+SACA LGS E +I YA + L + +ALIDMY +CG + ++ VF
Sbjct: 301 NEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVF 360
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ + K V WN+MI GLA++G+ A+ L +M ++ V+ ++ITF+ LL+AC+HAGLV
Sbjct: 361 SRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVD 420
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
+G F M+++ V+ ++EH C+VDLL ++ L A + I M EP I LLS+
Sbjct: 421 QGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSS 480
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C H D+E+ ++ + A S ++ +N+YA G W +A R++M + K
Sbjct: 481 CRAHADVELAKLASRKLLAMEPDNS-SIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKL 539
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
+ S I+++G HKFL H
Sbjct: 540 SAYSWIKLDGEVHKFLVQDTYH 561
>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
Length = 544
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 231/390 (59%), Gaps = 7/390 (1%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N+++ A+A+ G +D A ++ D M +D SFN MI +A G + SAR +F++VP+ V
Sbjct: 48 NALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGDVVSARRLFERVPSPTPV 107
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+W S++ AG++ A +F++M V+++++WN M++G ++ +E + LF M A
Sbjct: 108 TWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEG 167
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS--NPHATTALIDMYAKCGSIEQ 257
P+ TV S L+ACA G+LETG IH + L + TAL+DMYAKCG++E
Sbjct: 168 FAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVEL 227
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-DSCVKADDITFIGLLSACS 316
+L+VF K + ++ WNAMI GLA++GY AL + +M D V D++TF+G+L ACS
Sbjct: 228 ALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACS 287
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
H G V G E F +EK +G+ LEHY CMVDLL R+ L A ++I MP +P +
Sbjct: 288 HGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVW 347
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
ALL C +H+D+ ++A+ ++ G+ ++ +NLYA+ G+W R M
Sbjct: 348 RALLGGCRLHKDV----KMAETAISEMEATCSGDHVLLSNLYAAVGRWSGVEDVRRTMRS 403
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
GI K G S IE+N S H+F++G H S
Sbjct: 404 KGIEKIPGCSSIEINDSIHEFVSGDKSHPS 433
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 46 YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL- 104
++ TALL MY ++ A VF K+ ++ WN+M++ A G A+ + M L
Sbjct: 210 FLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELD 269
Query: 105 -----KDVTSFNIMIS----GYARIGKIHSARYIFDKVPAKDVV--SWNSLILAYTNAGE 153
+VT ++++ G+ +G+ H ++ +K ++ + ++ +G
Sbjct: 270 RTVVPDEVTFVGVLLACSHGGFVDVGREHF--HMIEKKYGIRLILEHYACMVDLLARSGH 327
Query: 154 MEKAGEMFKKMLVK-NVITWNTMVTG 178
+++A ++ M +K + + W ++ G
Sbjct: 328 LQEAHKIIAGMPMKPDAVVWRALLGG 353
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 155/483 (32%), Positives = 265/483 (54%), Gaps = 22/483 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++L + + +FP +K+ L G H Q + GF ++V +AL+ MY
Sbjct: 143 MRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGE 202
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------------------IDLM 102
+ DA +F+++ ++I++W SM+ + A+ L +D +
Sbjct: 203 LRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPI 262
Query: 103 PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK 162
+ V S +S + +H ++ + D+ N+L+ AY GE+ + +F
Sbjct: 263 AMVSVLSACSRVSEKSITEGVHG--FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFD 320
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLE 221
M ++VI+WN+++ Y ++ + E +++F M K G + + +T+++VL ACA+ GS
Sbjct: 321 GMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQR 380
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G IH GL SN T++IDMY KCG +E + + F + + K+V W+AM+ G
Sbjct: 381 LGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 440
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+HG+ AL++ EMN + VK + ITF+ +L+ACSHAGL++EG F M +F V +
Sbjct: 441 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 500
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401
EHYGCMVDLLGRA L A +LI+ M P + GALL AC +H+++++G+ A+ +
Sbjct: 501 EHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKL-F 559
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+ + + G ++ +N+YA G+WE+ R R +M ++G+VK G S++++ G H FL G
Sbjct: 560 ELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGD 619
Query: 462 IGH 464
H
Sbjct: 620 REH 622
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 160 MFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+F K + K NV +WN+++ RS +E + F M+ ++KP+ T + +C+ L
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
L +G + H A G + ++AL+DMY+KCG + + +F + +++ W +MI
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226
Query: 279 GLALHGYGYAALKLLGEM--------NDSCVKADDITFIGLLSACSHAG--LVQEGCELF 328
G + + AL L E D V D I + +LSACS + EG F
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGF 286
Query: 329 ---SRMEKDFGVTRKL 341
E D GV L
Sbjct: 287 LIKRGFEGDLGVENTL 302
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 250/473 (52%), Gaps = 10/473 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV + ++ +L A + G ++H + G V + AL+ MY
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD 380
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
+ A ++F MP++D+I+WN+++ +A AM+L M + V +F ++S
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + I + + + S N+L+ Y G + +A +F+ ++VI+W
Sbjct: 441 CANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISW 500
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N+M+ G+ + Y LF EM+ ++PD +T SVLS C N +LE G +IH T+
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+GL + + ALI+MY +CGS++ + VF+ Q +DV W AMI G A G A++L
Sbjct: 561 SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIEL 620
Query: 293 LGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+M N+ D TF +LSAC+HAGLV EG ++FS ME ++GV +EHYGC+V LL
Sbjct: 621 FWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLL 680
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GRAR A LI MPF P ++ LL AC IH ++ + + A K N +
Sbjct: 681 GRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNAL-KLNARNPAVY 739
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA+ G+W++ + R +M GI K G S IEV+ H+F+A H
Sbjct: 740 ILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSH 792
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 110/343 (32%), Positives = 179/343 (52%), Gaps = 16/343 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ D ++ LL A S G +H T++ G + V TAL+ M +RC
Sbjct: 220 MSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTM--CVRC 277
Query: 61 --IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIM 113
+D A + F+ + ++D++ +N+++ A A G A + D + L T +I+
Sbjct: 278 GDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSIL 337
Query: 114 ----ISGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S GK IHS +I + + DV N+LI Y G++ KA E+F M ++
Sbjct: 338 NACSTSKALEAGKLIHS--HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+I+WN ++ GY R + E + L+ +M++ VKP +T +LSACAN + G IH
Sbjct: 396 LISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHE 455
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+G+ SN H AL++MY +CGS+ ++ VF +Q +DV WN+MI G A HG
Sbjct: 456 DILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYET 515
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
A KL EM + ++ D+ITF +LS C + ++ G ++ R+
Sbjct: 516 AYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI 558
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 176/348 (50%), Gaps = 15/348 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H Q ++ G +++ L+ MY R + DA +VF++MP +D+I+WNS++ +A G
Sbjct: 49 IHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGF 108
Query: 92 MDHAMKLIDLM------PLKDVTSFNIMISGYARI-----GKIHSARYIFDKVPAKDVVS 140
A +L + M P K +T +I+ + Y+ KIHS I +D
Sbjct: 109 KKKAFQLFEEMQNAGFIPNK-ITYISILTACYSPAELENGKKIHSQ--IIKAGYQRDPRV 165
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
NSL+ Y G++ +A ++F + ++V+++NTM+ Y + E + LF +M + +
Sbjct: 166 QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGI 225
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD +T ++L A L+ G RIH + GL S+ TAL+ M +CG ++ + +
Sbjct: 226 SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQ 285
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F +DV +NA+I LA HG+ A + M V + T++ +L+ACS +
Sbjct: 286 AFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKA 345
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++ G + S + +D G + ++ ++ + R L +A EL MP
Sbjct: 346 LEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKARELFYTMP 392
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 204/474 (43%), Gaps = 53/474 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G + ++ +L A + G +H Q IK G+ VQ +LL MYG
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PLKDVTSFNI-- 112
+ A +VF + +D++++N+ML +A + + L M P K VT N+
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDK-VTYINLLD 237
Query: 113 ------MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
M+ RI K+ ++ D+ +L+ G+++ A + FK +
Sbjct: 238 AFTTPSMLDEGKRIHKL-----TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIAD 292
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
++V+ +N ++ + +E + + M++ V + T S+L+AC+ +LE G I
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H + +++G +S+ ALI MYA+CG + ++ E+FY +D+ WNA+I G A
Sbjct: 353 HSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDR 412
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG---------------------- 324
A++L +M VK +TF+ LLSAC+++ +G
Sbjct: 413 GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANAL 472
Query: 325 ------CELFSRMEKDFGVT--RKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTE 373
C + F T R + + M+ + + A +L + M EP
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532
Query: 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
++LS C + LE+G ++ + L N+Y CG ++A
Sbjct: 533 ITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDA 586
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
D+ + + + D T ++L C L RIH + G+ + + LI+MY
Sbjct: 13 DVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMY 72
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
KC S+ + +VF + +DV WN++I A G+ A +L EM ++ + IT+I
Sbjct: 73 VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYI 132
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+L+AC ++ G ++ S++ K G R ++ + G+ L RA ++
Sbjct: 133 SILTACYSPAELENGKKIHSQIIK-AGYQRDPRVQNSLLSMYGKCGDLPRARQVF 186
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 151/441 (34%), Positives = 230/441 (52%), Gaps = 41/441 (9%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----P 103
++++ ++G +D+A KVF+ + KD+ W +M+ F G+ A+ L M P
Sbjct: 204 SSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWP 263
Query: 104 LKDVTSF----------------------------------NIMISGYARIGKIHSARYI 129
+ + N +I Y+ + +AR +
Sbjct: 264 VDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRL 323
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FD D SWNS+I Y G ++ A E+F M K+ ++W TM++G +++ E +
Sbjct: 324 FDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEAL 383
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
+F+ M+A +KPD +T+ SV+SAC N+ SLE G +H Y ++ T+LIDMY
Sbjct: 384 TIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMY 443
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITF 308
KCG +E +LEVF + + CWNA+I+GLA++G +L + EM + S ++ITF
Sbjct: 444 MKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITF 503
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G+LSAC HAGLV+EG F M+ + + + HYGCMVDLLGRA + A LIE+MP
Sbjct: 504 TGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMP 563
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
P GALL +C H D E+G+RV + + + DG M +N+YAS G W+
Sbjct: 564 MSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPH-HDGFHTMLSNIYASEGMWQHVK 622
Query: 429 RWRNMMNDTGIVKTAGSSVIE 449
R M + K GSSV+E
Sbjct: 623 DLRGSMKQWHVPKIPGSSVVE 643
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 35/324 (10%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D Y+ +L A + G +H ++ GF ++Y+ AL+ MY + C+ DA KVF
Sbjct: 102 DCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVF 161
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ P D ++WN++L A+ +D A+ + MP + + + M+S + R G + AR
Sbjct: 162 DAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARK 221
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD V KD V TW M++ + R+ + E
Sbjct: 222 VFDGVERKD-------------------------------VFTWTAMISCFQRNGKFAEA 250
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ LF +M+ D + V++ACA L G H A GL S + ALI M
Sbjct: 251 LALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHM 310
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
Y+ ++ + +F Q D F WN+MI G +G A +L M D D++++
Sbjct: 311 YSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDK----DNVSW 366
Query: 309 IGLLSACSHAGLVQEGCELFSRME 332
++S C E +F+ M+
Sbjct: 367 TTMISGCVQNDQSSEALTIFNNMQ 390
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 125/302 (41%), Gaps = 50/302 (16%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSL-------------RCID------------- 62
G M HG + G + VQ AL+ MY S +C+D
Sbjct: 285 GEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLK 344
Query: 63 -----DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIM 113
DA ++F MP+KD ++W +M+ Q A+ + + M + D + +
Sbjct: 345 NGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSV 404
Query: 114 ISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
IS + + + YI + V+ SLI Y G +E A E+F M +
Sbjct: 405 ISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGT 464
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPDYLTVTSVLSACANLGSLETGARI-- 226
WN ++ G + L ++ +D+F EM++ + P+ +T T VLSAC + G +E G
Sbjct: 465 PCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFK 524
Query: 227 ---HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLAL 282
H Y + N ++D+ + G ++++ + + DV W A++
Sbjct: 525 LMQHKYH----IIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWK 580
Query: 283 HG 284
HG
Sbjct: 581 HG 582
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 34/231 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D + ++ A +SS G +H + + V + T+L+ MY C
Sbjct: 389 MQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGC 448
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A +VF+ M E+ WN+++ A G + MK +D+ + +S
Sbjct: 449 LESALEVFDTMEERGTPCWNAVIVGLAMNGLV---MKSLDMFSEMESSS----------- 494
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
+ +++ ++ A +AG +E+ FK M ++ N+ + M
Sbjct: 495 ------------TATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCM 542
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
V R+ E +L + M + PD ++L +C G E G R+
Sbjct: 543 VDLLGRAGYVKEAENLIESMP---MSPDVPAWGALLGSCWKHGDNEVGERV 590
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 151/443 (34%), Positives = 230/443 (51%), Gaps = 41/443 (9%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID-------------------- 100
+D+A ++F++MP ++ I+W M+ +A G+ + A+ L+
Sbjct: 368 VDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLA 427
Query: 101 ------LMPLKDVTSF-------------NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
L + V S N +IS Y + + R +F+++ KD VSW
Sbjct: 428 CSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSW 487
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NS I A +E A +F ML ++V++W T+++ Y +++ E V+ F M + K
Sbjct: 488 NSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEK 547
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ +T +LS C LGS + G +IH A +G+ S AL+ MY KCG + S +V
Sbjct: 548 PNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKV 606
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + +D+F WN I G A HG G A+K+ M V +++TF+GLL+ACSHAGLV
Sbjct: 607 FDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLV 666
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
EG + F M +D+G+T LEHY CMVDLLGR + A + I MP EP I ALL
Sbjct: 667 DEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLG 726
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH++ EIG R A+ + + + G +M +N+Y+S G W E R +M G+ K
Sbjct: 727 ACKIHKNAEIGRRAAEKLFT-TEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSK 785
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
G S +++ H F+ G H
Sbjct: 786 EPGCSWMQIRNKVHSFVTGDKQH 808
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 173/332 (52%), Gaps = 5/332 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYG-SLR 59
M G D +F +L A L + +L +KTGF V + T++L +Y
Sbjct: 214 MHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDAS 273
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+D A K F+ M E++ W++M+ A + G++D A+ + P+K + S +++G AR
Sbjct: 274 ALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLAR 333
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G+I AR +F+++P VVSWN++I Y G +++A E+F +M +N I+W M+ GY
Sbjct: 334 CGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGY 393
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E +DL + + P ++TS AC+++G+LETG ++H A G N
Sbjct: 394 AQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNS 453
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ ALI MY KC ++E +VF + +VKD WN+ I L + A + D+
Sbjct: 454 YVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIF----DN 509
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
+ D +++ ++SA + A E E F M
Sbjct: 510 MLSRDVVSWTTIISAYAQAERGDEAVEFFKTM 541
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 173/364 (47%), Gaps = 41/364 (11%)
Query: 48 QTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV 107
+A ++ L + +A +VF+ MP +DIIAWNSM+ A+ + G ++ A L D + +V
Sbjct: 36 HSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNV 95
Query: 108 TSFNIMISGYARIGKIHSARYI-------------------------------FDKVPAK 136
+ I++SGYAR+G++ AR + FD +P++
Sbjct: 96 RTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSR 155
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
DV SWNS++ Y ++ +M A +FK+M +N++TW M++GY+R + + + D+F M
Sbjct: 156 DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMH 215
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS-I 255
PD SVLSA L L + G S+ T+++++Y + S +
Sbjct: 216 HEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASAL 275
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+ +++ F ++ + W+ MI L+ G AA+ + G + + LL+
Sbjct: 276 DIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQ----TALLTGL 331
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
+ G + E LF ++ V+ + M+ + ++D A EL + MPF T S
Sbjct: 332 ARCGRITEARILFEQIPDPIVVS-----WNAMITGYMQNGMVDEAKELFDRMPFRNTISW 386
Query: 376 LGAL 379
G +
Sbjct: 387 AGMI 390
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 89/235 (37%), Gaps = 49/235 (20%)
Query: 15 LLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK 74
+LL G L S+ +G +H IK G + V AL+ MY C D + KVF+ M E+
Sbjct: 555 ILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEER 613
Query: 75 DIIAWNSMLDAFASCGQMDHAMKLID---------------------------------- 100
DI WN+ + A G A+K+ +
Sbjct: 614 DIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFF 673
Query: 101 --------LMPLKDVTSFNIMISGYARIGKIHSA-RYIFDKVPAKDVVSWNSLILA---Y 148
L PL + + M+ R G + A ++I+D D V W++L+ A +
Sbjct: 674 KSMSRDYGLTPL--LEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIH 731
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
NA +A E N + + Y +++EV +L MK V +
Sbjct: 732 KNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKE 786
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 161/504 (31%), Positives = 260/504 (51%), Gaps = 41/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D+ ++ L A LSS G LH Q I+ YV +A++++Y C
Sbjct: 282 MHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGC 341
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM--PLKDVTSF-------- 110
+A +VF + +++ ++W ++ F G +++L + M L V F
Sbjct: 342 FKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISG 401
Query: 111 -----------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
N +IS YA+ G + +A IF+ + +D+VSW
Sbjct: 402 CCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSW 461
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNV 200
+I AY+ G + KA E F M +NVITWN M+ Y++ + + ++ +M +V
Sbjct: 462 TGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDV 521
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD++T ++ CA++G+ + G +I + GL + A+I MY+KCG I ++ +
Sbjct: 522 IPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARK 581
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F KD+ WNAMI G + HG G A+++ ++ + K D I+++ +LS CSH+GL
Sbjct: 582 AFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGL 641
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V+EG F M++D ++ LEH+ CMVDLLGRA L A LI+ MP +PT + GALL
Sbjct: 642 VEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALL 701
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC H + ++ + AK + + S G M+ A +YA G+ +++ + R +M D GI
Sbjct: 702 SACKTHGNNDLAELAAKHLFDLDSPGSGG-YMLLAKMYADAGKSDDSAQVRKLMRDKGIK 760
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K+ G S +EVN H F A + H
Sbjct: 761 KSPGYSWMEVNNRVHVFKAEDVSH 784
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 151/326 (46%), Gaps = 40/326 (12%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI---- 99
+V ++ Y L + DA ++F +MP +D+ +WN+++ + GQ +A+ +
Sbjct: 91 NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150
Query: 100 ---DLMP------------------------LKDVTSFN---------IMISGYARIGKI 123
D +P L ++ F+ ++ R G +
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
A F ++ ++ NS+++ Y + ++ A E+FK M ++V++WN +++ +S
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E +D+ +M V+PD T TS L+ACA L SLE G ++HV N +P+ +
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVAS 330
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
A++++YAKCG +++ VF + ++ W +I G +G +++L +M +
Sbjct: 331 AMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAV 390
Query: 304 DDITFIGLLSACSHAGLVQEGCELFS 329
D L+S C + + G +L S
Sbjct: 391 DQFALATLISGCCNTMDICLGSQLHS 416
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 169/376 (44%), Gaps = 46/376 (12%)
Query: 1 MQELGVHADN-YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
M++ G N ++F ++K+ G L + L L G K VQTAL+ M
Sbjct: 149 MRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCG 208
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+D A K F ++ II NSML +A +DHA+++ MP +DV S+N++IS ++
Sbjct: 209 AMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSK 268
Query: 120 IGKIHSAR---------------------------------------YIFDKVPAKDVVS 140
G++ A + +P D
Sbjct: 269 SGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYV 328
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
++++ Y G ++A +F + +N ++W ++ G+L+ + E V+LF++M+A +
Sbjct: 329 ASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELM 388
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
D + +++S C N + G+++H +G + +LI MYAKCG+++ +
Sbjct: 389 AVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAEL 448
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F +D+ W MI + G A + +M+ V IT+ +L A G
Sbjct: 449 IFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNV----ITWNAMLGAYIQHGA 504
Query: 321 VQEGCELFSRM--EKD 334
++G +++S M EKD
Sbjct: 505 EEDGLKMYSDMLTEKD 520
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 72/364 (19%)
Query: 80 NSMLDAFASCGQMDHAMKLI-DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDV 138
N++L A+ SCG + A L+ D + +V + NIM++GYA++G + A +F ++P +DV
Sbjct: 64 NTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDV 123
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-A 197
SWN+++ +GY +S ++ +D+F M+
Sbjct: 124 ASWNTIM-------------------------------SGYYQSGQFLNALDIFVSMRQT 152
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
G+ P+ T V+ +C LG E ++ + +P TAL+DM +CG+++
Sbjct: 153 GDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDF 212
Query: 258 SLEVFYKSQVKDVFCWNAMILGLAL-HGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ + F + + + C N+M++G A HG +A E+ S + D +++ ++SA S
Sbjct: 213 ASKQFSRIKNPTIICRNSMLVGYAKSHGVDHAL-----EIFKSMPERDVVSWNMVISALS 267
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
+G V+E ++ +VD+ G+ P +
Sbjct: 268 KSGRVREALDM-------------------VVDMHGKG--------------VRPDSTTY 294
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
+ L+AC LE G ++ V ++ LYA CG ++EA R + + D
Sbjct: 295 TSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRD 354
Query: 437 TGIV 440
V
Sbjct: 355 RNSV 358
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 139/350 (39%), Positives = 214/350 (61%), Gaps = 3/350 (0%)
Query: 117 YARIGKIHSARYIFDK-VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
YAR G +AR +FD +P VVS +++ Y + G ++ A +F + K+ + WN M
Sbjct: 431 YARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAM 490
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ GY + E + LF M V+PD +TV VLSA A LG++E+G +H Y ++
Sbjct: 491 IDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRR 550
Query: 236 AS-NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
+ TALIDMY KCGS+ +++VF+ KD+ WNAMI G A+HG AL++
Sbjct: 551 VQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFV 610
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+ + + DITFIGLL+ACSH+G+V+EG E F ME+++G+ K+EHYGCMVDLLGRA
Sbjct: 611 QSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRA 670
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
L+ A L+++M P + +LL+AC +H+++ +G ++A + AK + G ++
Sbjct: 671 GLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAK-GLANSGMYILL 729
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA+ G W E R R+MM +GI K G S IE++ ++F+AG + H
Sbjct: 730 SNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSH 779
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 136/318 (42%), Gaps = 50/318 (15%)
Query: 16 LLKAAGILSSS---CIGL----MLHGQTIKTGFCGHVYVQTALLKMYGS----------- 57
LL A LS+S C GL LHG K G YV TALL MY
Sbjct: 385 LLPTAHTLSASLPACRGLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALF 444
Query: 58 ---------------LRC------IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM 96
L C +DDA +F+ +P KD + WN+M+D + G+ + A+
Sbjct: 445 DDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEAL 504
Query: 97 KLIDLM----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN-----SLILA 147
+L M D + +++S A++G + S +++ V V + +LI
Sbjct: 505 RLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDM 564
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y G + A ++F + K+++ WN M+ GY + +++F + + + P +T
Sbjct: 565 YCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITF 624
Query: 208 TSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+L+AC++ G +E G + G+ ++D+ + G I+++ + +
Sbjct: 625 IGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMK 684
Query: 267 V-KDVFCWNAMILGLALH 283
+ D W +++ LH
Sbjct: 685 ITPDAVMWVSLLAACRLH 702
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 254/488 (52%), Gaps = 44/488 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + +F L K+ +S G M+ ++K GF +V AL+ MY + A
Sbjct: 67 GIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMA 126
Query: 65 FKVFEKMPEKDIIAWNSM-------------LDAFASCGQMDHAMKLIDLMPLKDVTSF- 110
KVF+ M E+D+++WNS+ LD F ++ + +M T F
Sbjct: 127 QKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFL 186
Query: 111 -------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
N +I Y R G I A +F ++ K++VSWN++I
Sbjct: 187 SEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMI 246
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
+ Y G + A ++F +M ++VI+W +M+ GY ++ + E V LF EM VKPD +
Sbjct: 247 MGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEI 306
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
TV + LSACA+LGSL+ G +H Y + + S+ +LIDMY KCG +E++L+VF
Sbjct: 307 TVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDM 366
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ +D W ++I GLA++G+ +AL + +M + TF+G+L AC+H GLV +G
Sbjct: 367 KTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGV 426
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
E F ME + + +++HYGC+VDLL R+ LD A I+ MP P I LLSAC +
Sbjct: 427 EHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKL 486
Query: 386 HQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
H +L + + V+K +V SN +G ++ ++ YA +W++ + R +M T + K
Sbjct: 487 HGNLVLAEIVSKKLLVLDPSN---NGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPC 543
Query: 444 GSSVIEVN 451
S IEV
Sbjct: 544 AYSSIEVR 551
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 146/326 (44%), Gaps = 43/326 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ + V AD+ + + A LS +G L + G +Y+ L+ MYG
Sbjct: 164 MQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGM 223
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
ID A +VF +M EK+I++WN+M+ +A G + A KL + MP +DV S+ MI GY
Sbjct: 224 IDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLA 283
Query: 118 --------------------------------ARIGKIHSARYIFDKVPAKDVVS----W 141
A +G + + + D + D+ S
Sbjct: 284 KQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVG 343
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSLI Y G +EKA ++F M ++ ++W ++++G + +++FD+M +
Sbjct: 344 NSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGIC 403
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNG--LASNPHATTALIDMYAKCGSIEQSL 259
P + T VL ACA++G ++ G H + +N LA ++D+ + G ++ +
Sbjct: 404 PTHGTFVGVLLACAHVGLVDKGVE-HFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAY 462
Query: 260 EVFYKSQ-VKDVFCWNAMILGLALHG 284
K V DV W ++ LHG
Sbjct: 463 NFIKKMPIVPDVVIWRILLSACKLHG 488
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 1/207 (0%)
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+ KA +F ++ ++ WN M+ G +S + + ++ M ++ +LT + +
Sbjct: 22 LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKS 81
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
CA + + G + V++ G S + ALI MY G + + +VF +DV W
Sbjct: 82 CARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSW 141
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
N++I G L L EM V+AD +T + +SA + G L ++
Sbjct: 142 NSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYID- 200
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ GV L ++D+ GR ++D A
Sbjct: 201 EHGVVVDLYLGNTLIDMYGRRGMIDFA 227
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 256/478 (53%), Gaps = 17/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D +++ +L A L +G LH + I+ G V V +L+ MY +C
Sbjct: 47 MELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYA--KC 104
Query: 61 -----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-----KLIDLMPLKDVTSF 110
+DD+ KVFE+MPE ++++W +++ A+A G+ D K+I + SF
Sbjct: 105 AADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSF 164
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLV 166
+ ++ + ++ ++ + S NSLI Y +G ME A + F +
Sbjct: 165 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE 224
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
KN++++N +V GY ++ E LF+E+ + T S+LS A++G++ G +I
Sbjct: 225 KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 284
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H G SN ALI MY++CG+IE + +VF + + ++V W +MI G A HG+
Sbjct: 285 HGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFA 344
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL++ +M ++ K ++IT++ +LSACSH G++ EG + F+ M K+ G+ ++EHY C
Sbjct: 345 TRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYAC 404
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
MVDLLGR+ LL A+E I +MP + LL AC +H + E+G A+M+ +
Sbjct: 405 MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD- 463
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +NL+AS GQW++ + R M + ++K AG S IEV H+F G H
Sbjct: 464 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSH 521
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 173/365 (47%), Gaps = 45/365 (12%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYAR 119
A+KVF+KMPE++++ W M+ FA G A+ L M L D +++ ++S
Sbjct: 9 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68
Query: 120 IGKIHSARYIFDKVP----AKDVVSWNSLILAYTNA---GEMEKAGEMFKKMLVKNVITW 172
+G + + + +V A DV SL+ Y G ++ + ++F++M NV++W
Sbjct: 69 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128
Query: 173 NTMVTGYLRS-QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
++T Y +S + E ++LF +M +G+++P++ + +SVL AC NL TG +++ YA
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G+AS +LI MYA+ G +E + + F K++ +NA++ G A + A
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-------------------- 331
L E+ D+ + TF LLS + G + +G ++ R+
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 308
Query: 332 -----EKDFGVTRKLE-----HYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGA 378
E F V ++E + M+ + RA+E+ M +P E A
Sbjct: 309 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 368
Query: 379 LLSAC 383
+LSAC
Sbjct: 369 VLSAC 373
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 131/357 (36%), Positives = 219/357 (61%), Gaps = 12/357 (3%)
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y++ + AR +FD+V K+ V+WN++I Y +G ++ A ++F +M +++I+W M+
Sbjct: 108 YSKRRRFRKARLVFDRVEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMI 167
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G+++ L+ E + F EM+ VKPDY+ V + L+ACANLG+L G +H +
Sbjct: 168 NGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFK 227
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+N + +LID+Y +CG +E + +VF + + + V WN++I+G A +G+ + +L M
Sbjct: 228 NNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRM 287
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ K D +TF G L+ACSH GLV+EG F M++D+ ++ ++EHYGC+VDL RA
Sbjct: 288 QEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGR 347
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIH-QDLEIGDRVAKM-----VCAKSNYLSDGE 410
L+ A++++E+MP +P E ++G+LL+AC H D E+ +R+ K V SNY+
Sbjct: 348 LEEALKVVESMPMKPNEVVIGSLLAACRTHGNDTELAERMMKRLSELKVKGHSNYV---- 403
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
+ +N+YA+ GQWE A++ R M G+ K G S IE++ H F+AG H+ N
Sbjct: 404 --ILSNMYAADGQWEGASKMRRKMKGLGLKKQPGFSSIEIDDRTHVFMAGDSAHVEN 458
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 146/320 (45%), Gaps = 47/320 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGSLR 59
M+ GV ++ + LL +G G LHG K G V V TA+L MY R
Sbjct: 55 MRLAGVEPNHITLIALL--SGCADCEPFGDSLHGYACKLGLDRNQVMVGTAILGMYSKRR 112
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
A VF+++ +K+ + WN+M+D + G++D A K+ D MP +D+ S+ MI+G+ +
Sbjct: 113 RFRKARLVFDRVEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVK 172
Query: 120 IGKIHSA---------------------------------------RYIFDKVPAKDVVS 140
G A R++ + +V
Sbjct: 173 KGLHEEALAWFREMQVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRV 232
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
NSLI Y G +E A ++F +M + V++WN+++ G+ + E + F M+
Sbjct: 233 SNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERF 292
Query: 201 KPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
KPD +T T L+AC+++G +E G R D ++ L+D+Y++ G +E++L
Sbjct: 293 KPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEAL 352
Query: 260 EVFYKSQVKDVFCWNAMILG 279
+V +K N +++G
Sbjct: 353 KVVESMPMKP----NEVVIG 368
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
+ ++W + +T R+ E F M+ V+P+++T+ ++LS CA+ G +
Sbjct: 27 ETTVSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCADCEPF--GDSL 84
Query: 227 HVYATDNGLASNP-HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
H YA GL N TA++ MY+K ++ VF + + K+ WN MI G G
Sbjct: 85 HGYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDGYMRSGR 144
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
A K+ EM + D I++ +++ GL +E F M+
Sbjct: 145 VDDAAKVFDEMPER----DLISWTAMINGFVKKGLHEEALAWFREMQ 187
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 149/440 (33%), Positives = 236/440 (53%), Gaps = 31/440 (7%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ S L + S + +LH ++ G VYV +A + Y + A ++F
Sbjct: 71 DHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAERLF 130
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
KD+ DV ++ M++G+A G + AR+
Sbjct: 131 SY--TKDV----------------------------ADVVTWTTMVTGHANTGDLERARW 160
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
FD +P ++VVSWN+++ AY +AG + KA ++F M +N +W++MVTG +RS E
Sbjct: 161 FFDAMPERNVVSWNAMLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEA 220
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ +F EM V P+ + S +SAC+ L SLE G +H YA + TA++DM
Sbjct: 221 LRVFSEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDM 280
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
Y KCG I ++ VF VK+++ WN+MI GLA++G AL L +M + V+ +DITF
Sbjct: 281 YGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITF 340
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
IGLL ACSH+GLV EG LF+ M FG+ EHYG MVDLLGRA + A++ + +MP
Sbjct: 341 IGLLGACSHSGLVDEGRWLFNMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMP 400
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
EP + GAL AC IH ++E+G+ +AK + + ++ +N+Y + +W++
Sbjct: 401 VEPHPGLWGALAGACKIHGEVELGEEIAKKLI-ELEPRHGSRYILLSNIYGASNRWDDMA 459
Query: 429 RWRNMMNDTGIVKTAGSSVI 448
R ++ D + K G++++
Sbjct: 460 TVRRLLKDRKVPKGTGNAMV 479
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M +GV + + + A +L S G+ +H + + + TA++ MYG
Sbjct: 227 MIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGG 286
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY--- 117
I +A +VF MP K+I +WNSM+ A G+ A+ L M + V +I G
Sbjct: 287 IHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGA 346
Query: 118 -ARIGKIHSARYIFD 131
+ G + R++F+
Sbjct: 347 CSHSGLVDEGRWLFN 361
>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
Length = 683
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 235/429 (54%), Gaps = 17/429 (3%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMP--------------EKDIIAWNSMLDAFASCGQMDHAM 96
L+ YG + DA ++F +P E+++++WNSM+ + G + A
Sbjct: 236 LIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGDVCSAR 295
Query: 97 KLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
L D MP KD+ S+N MI+GY + ++ A +F +VP D V+WN +I +T G++E
Sbjct: 296 ALFDEMPHKDLVSWNTMIAGYTQASEMEEAEKLFWEVPDPDAVTWNLMIRGFTQKGDVEH 355
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A F +M ++ ITWNTM++GY +++ Y + LF M +PD+ T++SVL+ACA+
Sbjct: 356 ARGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLFQRMLEVGERPDHHTLSSVLAACAS 415
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF-YKSQVKDVFCWNA 275
L L GA++H + + AL+ MY++CG + + +F + +D+ WNA
Sbjct: 416 LAMLRLGAQLHQL-IEKSFLPDTATNNALMTMYSRCGELISAKAIFGHMHTQRDIVSWNA 474
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
+I G G AL+L EM + V ITFI LLSAC +AGLV EG +F M D+
Sbjct: 475 LIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLSACGNAGLVSEGRVVFHTMVHDY 534
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395
G+ +EHY +V+L+GR L+ A+ELI++MP P ++ GA L AC ++ + +
Sbjct: 535 GLAASVEHYAALVNLIGRHGQLEDALELIKSMPIAPDRAVWGAFLGACTAKKNEPLAEMA 594
Query: 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYH 455
A + +K + S ++ NL+A G+W A+ R M GI K G S I+++ H
Sbjct: 595 ANAL-SKIDPDSSAPYVLMHNLHAHEGRWGSASLVREDMERLGIHKHPGYSWIDLHDKVH 653
Query: 456 KFLAGGIGH 464
F++G H
Sbjct: 654 VFISGDTSH 662
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 181/408 (44%), Gaps = 58/408 (14%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR---I 120
A ++F+ +P + ++ WNS+L A + + A D MP++D+ S+N ++S YAR
Sbjct: 55 ARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMPVRDIISWNTLLSAYARSLQP 114
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ +AR +F ++P +D VSW++L+ AYT G ME+A +F +M +N +WNTM+TG+
Sbjct: 115 NDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHRNASSWNTMITGFF 174
Query: 181 RSQLYIEVVDLFDEM----------------------KAGNVKPDYLTV----------T 208
+ +++F M +A ++ LTV
Sbjct: 175 AVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEADDLLTKRLTVMDMDKAVGAFN 234
Query: 209 SVLSACANLGSLETGARIH--VYATDNG--------LASNPHATTALIDMYAKCGSIEQS 258
++++A G + R+ + T N N + +++ Y + G + +
Sbjct: 235 TLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGDVCSA 294
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+F + KD+ WN MI G A KL E+ D D +T+ ++ +
Sbjct: 295 RALFDEMPHKDLVSWNTMIAGYTQASEMEEAEKLFWEVPDP----DAVTWNLMIRGFTQK 350
Query: 319 GLVQEGCELFSRMEKDFGVTRK--LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
G V+ F RM + +T + Y D +L R +E+ E P L
Sbjct: 351 GDVEHARGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLFQRMLEVGE----RPDHHTL 406
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQ 423
++L+AC L +G ++ +++ + ++L D +Y+ CG+
Sbjct: 407 SSVLAACASLAMLRLGAQLHQLI--EKSFLPDTATNNALMTMYSRCGE 452
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 107 VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
V N + G R G+ +AR +FD +PA+ VV+WNSL+ A + ++ A F M V
Sbjct: 36 VRQHNRSLVGLLRRGRFSAARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMPV 95
Query: 167 KNVITWNTMVTGYLRSQLYIEVV---DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
+++I+WNT+++ Y RS ++ LF EM + D ++ +++L A G +E
Sbjct: 96 RDIISWNTLLSAYARSLQPNDLAAARRLFYEMP----QRDAVSWSTLLGAYTRRGLMEEA 151
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
R+ D N + +I + G + ++L VF KD +AM+ G +
Sbjct: 152 QRLF----DEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRN 207
Query: 284 GYGYAALKLLGEM-----NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G + A LL + D V A F L++A G V + LFS + K
Sbjct: 208 GRLHEADDLLTKRLTVMDMDKAVGA----FNTLIAAYGQTGRVTDARRLFSMIPK 258
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 11/176 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E+G D+++ +L A L+ +G LH Q I+ F AL+ MY
Sbjct: 394 MLEVGERPDHHTLSSVLAACASLAMLRLGAQLH-QLIEKSFLPDTATNNALMTMYSRCGE 452
Query: 61 IDDAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MIS 115
+ A +F M ++DI++WN+++ + G A++L + M V +I ++S
Sbjct: 453 LISAKAIFGHMHTQRDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLS 512
Query: 116 GYARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
G + R +F D A V + +L+ G++E A E+ K M +
Sbjct: 513 ACGNAGLVSEGRVVFHTMVHDYGLAASVEHYAALVNLIGRHGQLEDALELIKSMPI 568
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 140/377 (37%), Positives = 221/377 (58%), Gaps = 4/377 (1%)
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
GQM H I D+ + ++ YA++G + AR +FD++P + V WN+++
Sbjct: 66 GQMLHT-HFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLA 124
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVT 208
G+M+ A E+F M +NV+ W TM++GY ++ Y + + LF M + + P+ +T+
Sbjct: 125 RFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLV 184
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQV 267
S+L ACANL +LE G R+ YA NG N +A+ A+++MY KCG I+ + VF + +
Sbjct: 185 SILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSL 244
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+++ WN+M++GLA+HG AL+L +M DD+TF+GLL AC+ G+V++G +
Sbjct: 245 RNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHI 304
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F F + KLEHYGCMVDLLGRA L A E+I++M +P I GALL AC H
Sbjct: 305 FKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHG 364
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++E+ + A+ + + + G ++ +N+YAS GQW+ + R +M + I K+AG S
Sbjct: 365 NVELAEIAAESLFVLEPW-NPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSF 423
Query: 448 IEVNGSYHKFLAGGIGH 464
IE HKF+ H
Sbjct: 424 IEEGAQLHKFIVKDRSH 440
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 43/323 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + ++F L A LSSS +G MLH IK+GF ++ TALL MY + ++ A
Sbjct: 42 GFLPNQHTFNFLFSACTSLSSSSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVGALELA 101
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA------ 118
K+F++MP + + WN+M+ A G MD A++L MP ++V + MISGY+
Sbjct: 102 RKLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYD 161
Query: 119 -----------RIGKIHSARYIFDKVPA-----------------------KDVVSWNSL 144
G + +A + +PA K+ + N++
Sbjct: 162 KALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAV 221
Query: 145 ILAYTNAGEMEKAGEMFKKM-LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+ Y G+++ A +F ++ ++N+ +WN+MV G + ++L+D+M PD
Sbjct: 222 LEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPD 281
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNG-LASNPHATTALIDMYAKCGSIEQSLEVF 262
+T +L AC G ++ G I T + + ++D+ + G + ++ EV
Sbjct: 282 DVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVI 341
Query: 263 YKSQVK-DVFCWNAMILGLALHG 284
+K D W A++ + HG
Sbjct: 342 QSMSMKPDSVIWGALLGACSFHG 364
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 117/276 (42%), Gaps = 48/276 (17%)
Query: 172 WNTMVTGYL-RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+N ++ Y Q L+ +++ P+ T + SAC +L S G +H +
Sbjct: 14 YNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQMLHTHF 73
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G + A TAL+DMYAK G++E + ++F + V+ V WNAM+ GLA G AL
Sbjct: 74 IKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGAL 133
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L M V + + ++S S + LF ME++ G+
Sbjct: 134 ELFXSMPSRNV----VPWTTMISGYSWNKQYDKALGLFLGMEQEKGI------------- 176
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA----KMVCAKSNYL 406
+ A+ L+ +P AC LEIG RV K K+ Y
Sbjct: 177 ------MPNAVTLVSILP-------------ACANLXALEIGQRVEAYARKNGFFKNXYA 217
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
S+ L M Y CG+ + A WR + N+ G ++
Sbjct: 218 SNAVLEM----YVKCGKIDAA--WR-VFNEIGSLRN 246
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 37/259 (14%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
QE G+ + + +L A L + IG + K GF + Y A+L+MY I
Sbjct: 172 QEKGIMPNAVTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKI 231
Query: 62 DDAFKVFEKMPE-KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
D A++VF ++ +++ +WNSM+ A G+ A++L D M L + TS
Sbjct: 232 DAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYDQM-LGEGTS----------- 279
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK-----MLVKNVITWNTM 175
D V++ L+LA T G ++K +FK ++ + + M
Sbjct: 280 ---------------PDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCM 324
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R+ E ++ M ++KPD + ++L AC+ G++E A I +
Sbjct: 325 VDLLGRAGQLREAYEVIQSM---SMKPDSVIWGALLGACSFHGNVEL-AEIAAESLFVLE 380
Query: 236 ASNPHATTALIDMYAKCGS 254
NP L ++YA G
Sbjct: 381 PWNPGNYVILSNIYASAGQ 399
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 247/468 (52%), Gaps = 70/468 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LGV D ++P L+KA+ L + G+ +H IKTG
Sbjct: 105 MLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGH------------------- 145
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
E D NS++ +A+CG A K
Sbjct: 146 ------------ESDRFIQNSLIHMYAACGNSMWAQK----------------------- 170
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+FD + K+VVSWNS++ Y GEM A + F+ M K+V +W++++ GY+
Sbjct: 171 --------VFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYV 222
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
++ Y E + +F++M++ K + +T+ SV ACA++G+LE G I+ Y DNGL
Sbjct: 223 KAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLV 282
Query: 241 ATTALIDMYAKCGSIEQSLEVFY---KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
T+L+DMYAKCG+IE++L +F KSQ DV WNA+I GLA HG +LKL EM
Sbjct: 283 LQTSLVDMYAKCGAIEEALLIFRRVSKSQT-DVLIWNAVIGGLATHGLVEESLKLFKEMQ 341
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ D++T++ LL+AC+H GLV+E F + K G+T EHY CMVD+L RA L
Sbjct: 342 IVGICPDEVTYLCLLAACAHGGLVKEAWFFFESLSK-CGMTPTSEHYACMVDVLARAGQL 400
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFAN 416
A + I MP EPT S+LGALLS C+ H++L + + V K++ + N+ DG + +N
Sbjct: 401 TTAYQFICQMPTEPTASMLGALLSGCINHRNLALAEIVGRKLIELEPNH--DGRYIGLSN 458
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+YA +W++A R M G+ K+ G S +E++G H+F+A H
Sbjct: 459 MYAVDKRWDDARSMREAMERRGVKKSPGFSFVEISGVLHRFIAHDKTH 506
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 134/281 (47%), Gaps = 37/281 (13%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A +N+G++ + +F ++ + +WNT++ GY S+ I+ + +F +M V PDYLT
Sbjct: 57 ALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLT 116
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
++ A A L + ETG +H + G S+ +LI MYA CG+ + +VF Q
Sbjct: 117 YPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQ 176
Query: 267 VKDVFCWNAMILGLA--------------------------LHGYGYA-----ALKLLGE 295
K+V WN+M+ G A + GY A A+ + +
Sbjct: 177 QKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEK 236
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + KA+++T + + AC+H G +++G ++ + D G+ L +VD+ +
Sbjct: 237 MQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYI-VDNGLPLTLVLQTSLVDMYAKCG 295
Query: 356 LLDRAIELIEAMPFEPTE-----SILGALLSACVIHQDLEI 391
++ A+ + + T+ +++G L + ++ + L++
Sbjct: 296 AIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKL 336
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 206/345 (59%), Gaps = 5/345 (1%)
Query: 123 IHSARYIFDKVP--AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
I AR +FD +P A++V WN+++ +Y +M A +F M +N+I+W +++GY
Sbjct: 160 ISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYA 219
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + +F M+ NV PD +T+ +VLSACA LG+LE G I Y +GL N
Sbjct: 220 HINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVP 279
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
ALIDMYAK G+I+++L +F + K + W MI GLALHG G AL++ M
Sbjct: 280 LHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDR 339
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
VK ++ITFI +LSACSH GLVQ F+ M + + K+EHYGCM+DLLGRA L A
Sbjct: 340 VKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYLQEA 399
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYA 419
+L++ MPFEP +I G+LL+A H D +G+R K ++ + N + G + +N+YA
Sbjct: 400 QQLLQQMPFEPNAAIWGSLLAASYTHGDAMLGERTLKHLIELEPN--NSGNYALLSNIYA 457
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G+W+ + R MM D G+ K G S IEVN ++F+AG H
Sbjct: 458 SLGRWKASRIVRKMMRDRGVKKIPGGSFIEVNNRVNEFIAGETSH 502
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 132/259 (50%), Gaps = 42/259 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q + D+YSFP LKA LS++ GL H Q I+ G H++V +L++MY S
Sbjct: 101 IQSARLRPDSYSFPFALKAVIRLSATKTGLQFHSQAIRFGLHSHLHVLVSLIRMYSS-SH 159
Query: 61 IDDAFKVFEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
I DA K+F+ +P +++ WN+ML ++A M +A L D MP +++ S+ +ISGYA
Sbjct: 160 ISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYA 219
Query: 119 RIGKIHSARYIFDKVPAKDVVS----------------------W--------------- 141
I + H A IF + ++VV W
Sbjct: 220 HINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVP 279
Query: 142 --NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
N+LI Y +G +++A +F+ M K ++TW TM+ G L + +++F M+
Sbjct: 280 LHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDR 339
Query: 200 VKPDYLTVTSVLSACANLG 218
VKP+ +T +VLSAC+++G
Sbjct: 340 VKPNEITFIAVLSACSHVG 358
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 33/233 (14%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
N+ +NT++ S + LF+ +++ ++PD + L A L + +TG +
Sbjct: 73 PNIFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQF 132
Query: 227 HVYATDNGLASNPHATTALIDM--------------------------------YAKCGS 254
H A GL S+ H +LI M YAK
Sbjct: 133 HSQAIRFGLHSHLHVLVSLIRMYSSSHISDARKLFDGIPLTARNVALWNAMLTSYAKICD 192
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+ + +F +++ W A+I G A + A+ + M V D+IT + +LSA
Sbjct: 193 MPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSA 252
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
C+ G ++ G E G+ R + + ++D+ ++ + RA+ + E+M
Sbjct: 253 CAQLGALELG-EWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESM 304
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + +L A L + +G + G +V + AL+ MY
Sbjct: 234 MQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGN 293
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
I A +FE M K I+ W +M+ A G A+++ M V +F ++S
Sbjct: 294 IKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSA 353
Query: 117 YARIGKIHSARYIFDKVPAKDVV 139
+ +G + AR F + ++ +
Sbjct: 354 CSHVGLVQLARSFFTNMRSRYTI 376
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 243/465 (52%), Gaps = 50/465 (10%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF--KVFEKMPEKDIIAWNSMLDAFASC 89
+H ++ T H + +L+ D + ++F++MP+ + +N+++ +A
Sbjct: 35 IHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFFYNTIIRGYAKS 94
Query: 90 GQMDHAMKLIDLMPLKDVT----SFNIMISGYARIGKIH--------------------- 124
+ + L + M V +FN +I +R+ K+H
Sbjct: 95 SSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGFC 154
Query: 125 --------------------SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
+A +F++ DVVSW+ L+LA+ GE+E A ++F M
Sbjct: 155 SHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDM 214
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
K+V++W MV+GY ++ E ++LF EM ++PD +T+ SV+SAC NLG +ETG
Sbjct: 215 PEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGM 274
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+H Y +NG ALI+MYAKCG ++++ VF + K + WN+MI A HG
Sbjct: 275 NVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHG 334
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
Y A +L M +S + D ITF+ LL A +H GLV EG LF ME+D+G+ +EHY
Sbjct: 335 YAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHY 394
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKS 403
GC+VD+LGRA L+ A ELI MP + + GALL+AC I+ D+ +G+RV K++ K
Sbjct: 395 GCIVDMLGRAGRLEEAYELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKKLLELKP 454
Query: 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+ G ++ ++Y + G+ EAN R M ++G +K G S +
Sbjct: 455 D--EGGYYILLRDIYVASGRTAEANHIRQAMQESGAMKNPGYSWV 497
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 151/331 (45%), Gaps = 47/331 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGIL------SSSCIGLMLHGQTIKTGFCGHVYVQTALLKM 54
M++ V D ++F L+KA + S+ +HG K GFC H++VQ AL+ +
Sbjct: 107 MRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINL 166
Query: 55 YGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI 114
Y A++VF + D+++W+ ++ A G+++ A ++ D MP KDV S+ M+
Sbjct: 167 YAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMV 226
Query: 115 SGYARIGKIHSARYIF----------DKVPAKDVVS------------------------ 140
SGY++ A +F D+V V+S
Sbjct: 227 SGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFG 286
Query: 141 W-----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195
W N+LI Y G +++A +F M K++ITWN+M++ + +LF M
Sbjct: 287 WMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCM 346
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGS 254
+ PD +T ++L A + G ++ G R+ + D G+ ++ ++DM + G
Sbjct: 347 LNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGR 406
Query: 255 IEQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
+E++ E+ + + W A++ ++G
Sbjct: 407 LEEAYELIVTMPIPSNDIVWGALLAACRIYG 437
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 250/479 (52%), Gaps = 50/479 (10%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +HG ++ Y+ T ++ + + R + A +VF ++ + ++ N+M+ A+A
Sbjct: 31 LRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQN 90
Query: 90 GQMDHAMKLIDLM-------------------PL--------------KDVTSF------ 110
Q A+ + M P K V +
Sbjct: 91 HQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGC 150
Query: 111 -------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
N +I Y R G + A +FD++ +DVVSWN LI A+ G+M KA +F
Sbjct: 151 DSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNS 210
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M K ++TW MV+GY Y VD F M+ +PD +++ +VL ACA LG+LE G
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELG 270
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
I+ Y +G+ ++ H AL++MYAKCG I+Q+L++F KDV W+ +I GLA H
Sbjct: 271 RWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAH 330
Query: 284 GYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
G + A+ L EM + V+ + ITF+GLLSACS+AGLV EG F RM +GV +E
Sbjct: 331 GRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVE 390
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCA 401
HYGC+VDLLGR+ + RA++L+ MP + G+LLSAC H D++ A ++V
Sbjct: 391 HYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVEL 450
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ + + G L+M AN+YA+ +W + R + + KT G S+IEV +F+AG
Sbjct: 451 EPDDV--GNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFVAG 507
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 50/322 (15%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D +++P LLKA G ++ +G +H +++G VQ +L++MY + A KVF
Sbjct: 118 DRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++M E+D+++WN ++ A A GQM A L + MP K + ++ M+SGY +G A
Sbjct: 178 DEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVD 237
Query: 129 IFDKVPAK----DVVS------------------W-----------------NSLILAYT 149
F + + D VS W N+L+ Y
Sbjct: 238 AFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYA 297
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVT 208
G +++A ++F M K+VI+W+T++ G E V LF EM K G V+P+ +T
Sbjct: 298 KCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFV 357
Query: 209 SVLSACANLGSLETG----ARIH-VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+LSAC+ G ++ G R++ VY + G+ ++D+ + G I ++L++
Sbjct: 358 GLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEH----YGCVVDLLGRSGQIRRALDLVR 413
Query: 264 KSQVK-DVFCWNAMILGLALHG 284
V D W +++ HG
Sbjct: 414 DMPVPADAKVWGSLLSACRSHG 435
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 34/228 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D+ S +L A L + +G ++ + G ++ AL++MY C
Sbjct: 242 MQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGC 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A ++F+ M +KD+I+W++++ A+ G+ A+ L M +
Sbjct: 302 IDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEME---------------KE 346
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
GK+ +V+++ L+ A + AG +++ F +M + V + +
Sbjct: 347 GKVR-----------PNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCV 395
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
V RS +DL +M V D S+LSAC + G ++T
Sbjct: 396 VDLLGRSGQIRRALDLVRDMP---VPADAKVWGSLLSACRSHGDVDTA 440
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 250/479 (52%), Gaps = 50/479 (10%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +HG ++ Y+ T ++ + + R + A +VF ++ + ++ N+M+ A+A
Sbjct: 31 LRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQN 90
Query: 90 GQMDHAMKLIDLM-------------------PL--------------KDVTSF------ 110
Q A+ + M P K V +
Sbjct: 91 HQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGC 150
Query: 111 -------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
N +I Y R G + A +FD++ +DVVSWN LI A+ G+M KA +F
Sbjct: 151 DSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNS 210
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M K ++TW MV+GY Y VD F M+ +PD +++ +VL ACA LG+LE G
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELG 270
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
I+ Y +G+ ++ H AL++MYAKCG I+Q+L++F KDV W+ +I GLA H
Sbjct: 271 RWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAH 330
Query: 284 GYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
G + A+ L EM + V+ + ITF+GLLSACS+AGLV EG F RM +GV +E
Sbjct: 331 GRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVE 390
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCA 401
HYGC+VDLLGR+ + RA++L+ MP + G+LLSAC H D++ A ++V
Sbjct: 391 HYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVEL 450
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ + + G L+M AN+YA+ +W + R + + KT G S+IEV +F+AG
Sbjct: 451 EPDDV--GNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFVAG 507
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 50/322 (15%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D +++P LLKA G ++ +G +H +++G VQ +L++MY + A KVF
Sbjct: 118 DRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++M E+D+++WN ++ A A GQM A L + MP K + ++ M+SGY +G A
Sbjct: 178 DEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVD 237
Query: 129 IFDKVPAK----DVVS------------------W-----------------NSLILAYT 149
F + + D VS W N+L+ Y
Sbjct: 238 AFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYA 297
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVT 208
G +++A ++F M K+VI+W+T++ G E V LF EM K G V+P+ +T
Sbjct: 298 KCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFV 357
Query: 209 SVLSACANLGSLETG----ARIH-VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+LSAC+ G ++ G R++ VY + G+ ++D+ + G I ++L++
Sbjct: 358 GLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEH----YGCVVDLLGRSGQIRRALDLVR 413
Query: 264 KSQVK-DVFCWNAMILGLALHG 284
V D W +++ HG
Sbjct: 414 DMPVPADAKVWGSLLSACRSHG 435
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 34/228 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D+ S +L A L + +G ++ + G ++ AL++MY C
Sbjct: 242 MQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGC 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A ++F+ M +KD+I+W++++ A+ G+ A+ L M +
Sbjct: 302 IDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEME---------------KE 346
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
GK+ +V+++ L+ A + AG +++ F +M + V + +
Sbjct: 347 GKVR-----------PNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCV 395
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
V RS +DL +M V D S+LSAC + G ++T
Sbjct: 396 VDLLGRSGQIRRALDLVRDMP---VPADAKVWGSLLSACRSHGDVDTA 440
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 222/369 (60%), Gaps = 11/369 (2%)
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ DV +I YA+ GK+ AR +FD++ +++VSWN++I Y G+++ A ++F K
Sbjct: 123 MNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDK 182
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
+ VKNV++W ++ G+++ + Y E ++ F EM+ V PD++TV +++SACANLG+L G
Sbjct: 183 LPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLG 242
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+H N +LIDMYA+CG IE + +VF +++ WN++I+G A++
Sbjct: 243 LWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVN 302
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G AL M ++ + +++ L+ACSHAGL+ EG ++F+ +++D + ++EH
Sbjct: 303 GLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEH 362
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC--- 400
YGC+VDL RA L A ++I+ MP P E +LG+LL+AC D+E+ ++V K
Sbjct: 363 YGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELY 422
Query: 401 --AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
SNY+ +F+N+YA+ G+W+ A++ R M + G+ K S IE++ HKF+
Sbjct: 423 PGGDSNYV------LFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSGIHKFV 476
Query: 459 AGGIGHLSN 467
+G H N
Sbjct: 477 SGDKYHEEN 485
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 137/282 (48%), Gaps = 41/282 (14%)
Query: 24 SSSCIGLMLHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSM 82
+S G LH K GF V V TAL+ MY +D A VF++M +++++WN+M
Sbjct: 104 TSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTM 163
Query: 83 LDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR----------------------- 119
+D + G +D A+KL D +P+K+V S+ ++I G+ +
Sbjct: 164 IDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDF 223
Query: 120 --IGKIHSA--------------RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ I SA R + K +V NSLI Y G +E A ++F
Sbjct: 224 VTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDG 283
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M +N+++WN+++ G+ + L + + F MK ++P+ ++ TS L+AC++ G ++ G
Sbjct: 284 MSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEG 343
Query: 224 ARIHV-YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+I D+ + L+D+Y++ G ++++ +V K
Sbjct: 344 LKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKK 385
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 38/235 (16%)
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG---SLETGAR 225
++W + ++ + ++ +++ F +M V+P+++T+ ++LSACA+ S+ GA
Sbjct: 52 TVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAA 111
Query: 226 IHVYATDNGLASNP-HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+H +A +G A N TALIDMYAKCG ++ + VF + V+++ WN MI G +G
Sbjct: 112 LHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNG 171
Query: 285 YGYAALKLLG-------------------------------EMNDSCVKADDITFIGLLS 313
ALKL EM + V D +T I ++S
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIIS 231
Query: 314 ACSHAGLVQEGCELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
AC++ G + G + M+K+F K+ ++D+ R ++ A ++ + M
Sbjct: 232 ACANLGALGLGLWVHRLVMKKEFRDNVKV--LNSLIDMYARCGCIELARQVFDGM 284
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 140/305 (45%), Gaps = 32/305 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + ++ A L + +GL +H +K F +V V +L+ MY C
Sbjct: 214 MQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGC 273
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
I+ A +VF+ M ++++++WNS++ FA G D A+ M + + S+ ++
Sbjct: 274 IELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTA 333
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVI 170
+ G I IF D + + + L+ Y+ AG +++A ++ KKM ++ N +
Sbjct: 334 CSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEV 393
Query: 171 TWNTMVTGYLRSQLYIE----VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
+++ R+Q +E V+ E+ G +Y+ +++ +A +G + +++
Sbjct: 394 VLGSLLAA-CRTQGDVELAEKVMKYQVELYPGG-DSNYVLFSNIYAA---VGKWDGASKV 448
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY---KSQVKDVFCWNAM-ILGLAL 282
+ GL N ++ ID + F K ++ + ++A+ +L L
Sbjct: 449 RREMKERGLQKNLAFSSIEID---------SGIHKFVSGDKYHEENDYIYSALELLSFEL 499
Query: 283 HGYGY 287
H YGY
Sbjct: 500 HLYGY 504
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/441 (34%), Positives = 230/441 (52%), Gaps = 41/441 (9%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----P 103
++++ ++G +D+A KVF+ + KD+ W +M+ F G+ A+ L M P
Sbjct: 204 SSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWP 263
Query: 104 LKDVTSF----------------------------------NIMISGYARIGKIHSARYI 129
+ + N +I Y+ + +AR +
Sbjct: 264 VDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRL 323
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FD D SWNS+I Y G ++ A E+F M K+ ++W TM++G +++ E +
Sbjct: 324 FDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEAL 383
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
+F+ M+A +KPD +T+ SV+SAC N+ SLE G +H Y ++ T+LIDMY
Sbjct: 384 TIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMY 443
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITF 308
KCG +E +LEVF + + CWNA+I+GLA++G +L + EM + S ++ITF
Sbjct: 444 MKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITF 503
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G+LSAC HAGLV+EG F M+ + + + HYGCMVDLLGRA + A LIE+MP
Sbjct: 504 TGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMP 563
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428
P GALL +C H D E+G+RV + + + DG M +N+YAS G W+
Sbjct: 564 MSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPH-HDGFHTMLSNIYASEGMWQHVK 622
Query: 429 RWRNMMNDTGIVKTAGSSVIE 449
R M + K GSSV+E
Sbjct: 623 DLRGSMKQWHVPKIPGSSVVE 643
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 35/324 (10%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D Y+ +L A + G +H ++ GF ++Y+ AL+ MY + C+ DA KVF
Sbjct: 102 DCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVF 161
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
+ P D ++WN++L A+ +D A+ + MP + + + M+S + R G + AR
Sbjct: 162 DAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARK 221
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD V KD V TW M++ + R+ + E
Sbjct: 222 VFDVVERKD-------------------------------VFTWTAMISCFQRNGKFAEA 250
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ LF +M+ D + V++ACA L G H A GL S + ALI M
Sbjct: 251 LALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHM 310
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
Y+ ++ + +F Q D F WN+MI G +G A +L M D D++++
Sbjct: 311 YSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDK----DNVSW 366
Query: 309 IGLLSACSHAGLVQEGCELFSRME 332
++S C E +F+ M+
Sbjct: 367 TTMISGCVQNDQSSEALTIFNNMQ 390
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 125/302 (41%), Gaps = 50/302 (16%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSL-------------RCID------------- 62
G M HG + G + VQ AL+ MY S +C+D
Sbjct: 285 GEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLK 344
Query: 63 -----DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIM 113
DA ++F MP+KD ++W +M+ Q A+ + + M + D + +
Sbjct: 345 NGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSV 404
Query: 114 ISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
IS + + + YI + V+ SLI Y G +E A E+F M +
Sbjct: 405 ISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGT 464
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPDYLTVTSVLSACANLGSLETGARI-- 226
WN ++ G + L ++ +D+F EM++ + P+ +T T VLSAC + G +E G
Sbjct: 465 PCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFK 524
Query: 227 ---HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLAL 282
H Y + N ++D+ + G ++++ + + DV W A++
Sbjct: 525 LMQHKYH----IIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWK 580
Query: 283 HG 284
HG
Sbjct: 581 HG 582
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 34/231 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D + ++ A +SS G +H + + V + T+L+ MY C
Sbjct: 389 MQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGC 448
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A +VF+ M E+ WN+++ A G + MK +D+ + +S
Sbjct: 449 LESALEVFDTMEERGTPCWNAVIVGLAMNGLV---MKSLDMFSEMESSS----------- 494
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
+ +++ ++ A +AG +E+ FK M ++ N+ + M
Sbjct: 495 ------------TATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCM 542
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
V R+ E +L + M + PD ++L +C G E G R+
Sbjct: 543 VDLLGRAGYVKEAENLIESMP---MSPDVPAWGALLGSCWKHGDNEVGERV 590
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 250/479 (52%), Gaps = 50/479 (10%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +HG ++ Y+ T ++ + + R + A +VF ++ + ++ N+M+ A+A
Sbjct: 31 LRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQN 90
Query: 90 GQMDHAMKLIDLM-------------------PL--------------KDVTSF------ 110
Q A+ + M P K V +
Sbjct: 91 HQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGC 150
Query: 111 -------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
N +I Y R G + A +FD++ +DVVSWN LI A+ G+M KA +F
Sbjct: 151 DSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNS 210
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M K ++TW MV+GY Y VD F M+ +PD +++ +VL ACA LG+LE G
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELG 270
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
I+ Y +G+ ++ H AL++MYAKCG I+Q+L++F KDV W+ +I GLA H
Sbjct: 271 RWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAH 330
Query: 284 GYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
G + A+ L EM + V+ + ITF+GLLSACS+AGLV EG F RM +GV +E
Sbjct: 331 GRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVE 390
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCA 401
HYGC+VDLLGR+ + RA++L+ MP + G+LLSAC H D++ A ++V
Sbjct: 391 HYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVEL 450
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ + + G L+M AN+YA+ +W + R + + KT G S+IEV +F+AG
Sbjct: 451 EPDDV--GNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFVAG 507
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 50/322 (15%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D +++P LLKA G ++ +G +H +++G VQ +L++MY + A KVF
Sbjct: 118 DRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++M E+D+++WN ++ A A GQM A L + MP K + ++ M+SGY +G A
Sbjct: 178 DEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVD 237
Query: 129 IFDKVPAK----DVVS------------------W-----------------NSLILAYT 149
F + + D VS W N+L+ Y
Sbjct: 238 AFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYA 297
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVT 208
G +++A ++F M K+VI+W+T++ G E V LF EM K G V+P+ +T
Sbjct: 298 KCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFV 357
Query: 209 SVLSACANLGSLETG----ARIH-VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+LSAC+ G ++ G R++ VY + G+ ++D+ + G I ++L++
Sbjct: 358 GLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEH----YGCVVDLLGRSGQIRRALDLVR 413
Query: 264 KSQVK-DVFCWNAMILGLALHG 284
V D W +++ HG
Sbjct: 414 DMPVPADAKVWGSLLSACRSHG 435
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 34/228 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D+ S +L A L + +G ++ + G ++ AL++MY C
Sbjct: 242 MQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGC 301
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID A ++F+ M +KD+I+W++++ A+ G+ A+ L M +
Sbjct: 302 IDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEME---------------KE 346
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
GK+ +V+++ L+ A + AG +++ F +M + V + +
Sbjct: 347 GKVR-----------PNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCV 395
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
V RS +DL +M V D S+LSAC + G ++T
Sbjct: 396 VDLLGRSGQIRRALDLVRDMP---VPADAKVWGSLLSACRSHGDVDTA 440
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/495 (32%), Positives = 253/495 (51%), Gaps = 52/495 (10%)
Query: 15 LLLKAAGILSSSCIGLM-----------LHGQTIKTGF-CGHVYVQTALLKMYGSLRCID 62
L L+ G+ S C L+ +H Q + G + + + Y
Sbjct: 11 LALRRGGMNRSVCHHLLTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPA 70
Query: 63 DAFKVFEKMPEKDIIAWNSML--------------------------DAFASCGQMDHAM 96
DA ++F+++P DII++ S++ D FA+ G + +
Sbjct: 71 DAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASG 130
Query: 97 KLIDLMPLKDVTSF-------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
L D V N ++ Y R GK AR +FD++ KD V+W S
Sbjct: 131 GLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGS 190
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
++ Y ++ A F +M +K+ ++W ++TG+++ + I+ ++LF +M +P+
Sbjct: 191 MLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPN 250
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
++T+ VLSACA++G+L+ G IH Y + + +N T AL+DMYAK GSI + VF
Sbjct: 251 HITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFE 310
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ Q+KD F W MI + G G A++L +M S + + +TF+ +LSACSHAGL+QE
Sbjct: 311 EVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQE 370
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G ELF +M + + + +LEHYGCMVDLLGR LL+ A LI+ M EP I +LLSAC
Sbjct: 371 GRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSAC 430
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
+ H + + + +A M K DG ++ N+YA +W+EA R M I K
Sbjct: 431 LAHGNDRLAE-IAGMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKP 489
Query: 444 GSSVIEVNGSYHKFL 458
G S IEV+G H+FL
Sbjct: 490 GCSWIEVDGVVHEFL 504
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 49/325 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D ++ L A+G L IG ++HG + G + V AL+ MY + A
Sbjct: 114 GHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPA 173
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF++M KD + W SML + C +D A+ MP+K S+ +I+G+ + +
Sbjct: 174 RTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPI 233
Query: 125 SARYIFDKV---------------------------------------PAKDVVSWNSLI 145
A +F K+ +++ N+L+
Sbjct: 234 QALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALM 293
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y +G + A +F+++ +K+ TW TM++ + + V+LF +M + P+ +
Sbjct: 294 DMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSV 353
Query: 206 TVTSVLSACANLGSLETGARI-----HVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
T SVLSAC++ G ++ G + VY D L ++D+ + G +E++
Sbjct: 354 TFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEH----YGCMVDLLGRGGLLEEAEA 409
Query: 261 VFYKSQVK-DVFCWNAMILGLALHG 284
+ V+ D+ W +++ HG
Sbjct: 410 LIDHMDVEPDIVIWRSLLSACLAHG 434
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 256/478 (53%), Gaps = 17/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D +++ +L A L +G LH + I+ G V V +L+ MY +C
Sbjct: 42 MELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYA--KC 99
Query: 61 -----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-----KLIDLMPLKDVTSF 110
+DD+ KVFE+MPE ++++W +++ A+A G+ D K+I + SF
Sbjct: 100 AADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSF 159
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLV 166
+ ++ + ++ ++ + S NSLI Y +G ME A + F +
Sbjct: 160 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE 219
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
KN++++N +V GY ++ E LF+E+ + T S+LS A++G++ G +I
Sbjct: 220 KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 279
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H G SN ALI MY++CG+IE + +VF + + ++V W +MI G A HG+
Sbjct: 280 HGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFA 339
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL++ +M ++ K ++IT++ +LSACSH G++ EG + F+ M K+ G+ ++EHY C
Sbjct: 340 TRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYAC 399
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
MVDLLGR+ LL A+E I +MP + LL AC +H + E+G A+M+ +
Sbjct: 400 MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD- 458
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +NL+AS GQW++ + R M + ++K AG S IEV H+F G H
Sbjct: 459 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSH 516
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 173/365 (47%), Gaps = 45/365 (12%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYAR 119
A+KVF+KMPE++++ W M+ FA G A+ L M L D +++ ++S
Sbjct: 4 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63
Query: 120 IGKIHSARYIFDKVP----AKDVVSWNSLILAYTNA---GEMEKAGEMFKKMLVKNVITW 172
+G + + + +V A DV SL+ Y G ++ + ++F++M NV++W
Sbjct: 64 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123
Query: 173 NTMVTGYLRS-QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
++T Y +S + E ++LF +M +G+++P++ + +SVL AC NL TG +++ YA
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G+AS +LI MYA+ G +E + + F K++ +NA++ G A + A
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-------------------- 331
L E+ D+ + TF LLS + G + +G ++ R+
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 303
Query: 332 -----EKDFGVTRKLE-----HYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGA 378
E F V ++E + M+ + RA+E+ M +P E A
Sbjct: 304 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 363
Query: 379 LLSAC 383
+LSAC
Sbjct: 364 VLSAC 368
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/466 (33%), Positives = 254/466 (54%), Gaps = 11/466 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D + +L +L + L++H +K G ++V AL+ +YG L +++A
Sbjct: 164 GVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEA 223
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARI 120
VF M +D++ WNS++ GQ A+K+ M DV + + S A+
Sbjct: 224 QCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQG 283
Query: 121 GKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
G SA+ + V + D+++ N+++ Y +E A MF M V++ ++WNT+
Sbjct: 284 GDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTL 343
Query: 176 VTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
+TGY+++ L E V+ + M K +K T SVL A ++LG+L+ G R+H + G
Sbjct: 344 ITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIG 403
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L + + T LID+YAKCG + +++ +F K + WNA+I GL +HG+G AL L
Sbjct: 404 LNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFS 463
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
M +K D +TF+ LL+ACSHAGLV +G F M+ + + +HY CM D+LGRA
Sbjct: 464 RMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRA 523
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
LD A I+ MP +P ++ GALL AC IH ++E+G +VA + + + G ++
Sbjct: 524 GQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMG-KVASQNLFELDPENVGYYVLM 582
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+N+YA G+W+ + R+++ + KT G S IEV S + F +G
Sbjct: 583 SNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSG 628
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 185/393 (47%), Gaps = 24/393 (6%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDDAFKV 67
D ++FP L++AA S+ LH ++ G V+ +L+ Y I +A+KV
Sbjct: 69 DGFTFPSLIRAA---PSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKV 125
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY---------- 117
F++M E+D+ AWN+ML + A+ L M + V + +S
Sbjct: 126 FDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQ 185
Query: 118 --ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
A + +++ ++ D K++ N+LI Y G +E+A +F M ++++TWN++
Sbjct: 186 VLALVMHVYAVKHGLD----KELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSI 241
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
++G + + +F M+ V PD LT+ S+ SA A G + +H Y G
Sbjct: 242 ISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGW 301
Query: 236 -ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
+ A A++DMYAK +IE + +F V+D WN +I G +G A++ G
Sbjct: 302 DVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYG 361
Query: 295 EMND-SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
M +KA TF+ +L A SH G +Q+G + + + G+ + C++DL +
Sbjct: 362 HMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHA-LSIKIGLNVDVYVGTCLIDLYAK 420
Query: 354 ARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
L A+ L E MP T A++S +H
Sbjct: 421 CGKLAEAMLLFEKMPRRST-GPWNAIISGLGVH 452
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 250/467 (53%), Gaps = 20/467 (4%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK- 66
DN++ P ++KA L +G ++HG K V+V AL+ MYG +++A K
Sbjct: 206 PDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKR 265
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQ----MDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
VF+ M K + +WN++L +A +D +++ D D + ++ +R+
Sbjct: 266 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 325
Query: 123 IHSARYI----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+H I A D SL+ Y G+ A +F M +++++WN M+ G
Sbjct: 326 LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAG 385
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y ++ L E ++LF +M + ++P + + V AC+ L +L G +H +A L +
Sbjct: 386 YSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTED 445
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
++++IDMYAK G I S +F + + KDV WN +I G +HG G AL+L +M
Sbjct: 446 IFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLR 505
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
+K DD TF G+L ACSHAGLV++G E F++M + KLEHY C+VD+LGRA +D
Sbjct: 506 LGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRID 565
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC-----AKSNYLSDGELMM 413
A+ LIE MP +P I +LLS+C IH +L +G++VA + NY+ +
Sbjct: 566 DALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYV------L 619
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+NL+A G+W++ R R M D G+ K AG S IEV G H FL G
Sbjct: 620 ISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIG 666
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 155/326 (47%), Gaps = 15/326 (4%)
Query: 15 LLLKAAGILSSSCIGLMLHGQ-TIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE 73
+LL+A G +G LH + T FC + T ++ MY D+ VF+K+
Sbjct: 110 VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 169
Query: 74 KDIIAWNSMLDAFASCGQMDHAMKLI-DLMPLKDVTSFNIMI-------SGYARIGK--- 122
K++ WN+++ A+ + AM + +L+ + + N + +G +G
Sbjct: 170 KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 229
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA-GEMFKKMLVKNVITWNTMVTGYLR 181
IH D V DV N+LI Y G +E+A +F M K V +WN ++ GY +
Sbjct: 230 IHGMATKMDLV--SDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQ 287
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ + +DL+ +M + PD+ T+ S+L AC+ + SL G IH +A NGLA +P
Sbjct: 288 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
+L+ +Y CG + +F + + + WN MI G + +G A+ L +M +
Sbjct: 348 GISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGI 407
Query: 302 KADDITFIGLLSACSHAGLVQEGCEL 327
+ +I + + ACS ++ G EL
Sbjct: 408 QPYEIAIMCVCGACSQLSALRLGKEL 433
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 253/459 (55%), Gaps = 12/459 (2%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D+ +F L L A L + + G+ V+V +ALL +Y + DA +VF
Sbjct: 110 DSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVF 169
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM---------ISGYAR 119
+ MP KD +AW++M+ F S G+ A+ + M V ++ ++G R
Sbjct: 170 DGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTR 229
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+G R++ + DVV SL+ Y G + A ++F+ M +N ++WN +++G+
Sbjct: 230 MGASVHGRFLRHGM-RMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGF 288
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E +DLF EM ++PD + S L ACA++G L+ G IH + L
Sbjct: 289 AQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LEFQC 347
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TA++DMY+KCGS+E + ++F K +D+ WNAMI HG G+ AL L E+N++
Sbjct: 348 ILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNET 407
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+K D TF LLSA SH+GLV+EG F RM +FG+ +H C+VDLL R+ L++
Sbjct: 408 GIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEE 467
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A E++ +M EPT I ALLS C+ ++ LE+G+ +AK + +S G L + +NLYA
Sbjct: 468 ANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKIL-ESQPEDIGVLALVSNLYA 526
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ +W++ R +M D+G K G S+IEV+G+ H F+
Sbjct: 527 AAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFV 565
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 143/291 (49%), Gaps = 15/291 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E GV D +++A + ++ +G +HG+ ++ G V + T+L+ MY
Sbjct: 203 MREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGH 262
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN-IMIS---- 115
D A +VF MP ++ ++WN+++ FA G D A+ L M + + ++S
Sbjct: 263 FDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLA 322
Query: 116 ----GYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G+ ++GK IH +I ++ + ++ +++ Y+ G +E A ++F K+ ++++
Sbjct: 323 CADVGFLKLGKSIHG--FILRRLEFQCILG-TAVLDMYSKCGSLESARKLFNKLSSRDLV 379
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVY 229
WN M+ + + LF E+ +KPD+ T S+LSA ++ G +E G
Sbjct: 380 LWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRM 439
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILG 279
T+ G+ ++D+ A+ G +E++ E+ + + W A++ G
Sbjct: 440 ITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSG 490
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 35/263 (13%)
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKD--VVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
F + + YAR+G + +A P+ + +WN+L+ A + AG A +F+ +
Sbjct: 47 FPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRAL--- 103
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+ +PD T T L+ACA LG L+ +
Sbjct: 104 -----------------------------PSSARPDSTTFTLALTACARLGDLDAAEAVR 134
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
V A G + +AL+ +Y++CG++ ++ VF KD W+ M+ G G
Sbjct: 135 VRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPV 194
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
AL + M + V D++ +G++ AC+ G + G + R + G+ + +
Sbjct: 195 EALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLR-HGMRMDVVIATSL 253
Query: 348 VDLLGRARLLDRAIELIEAMPFE 370
VD+ + D A ++ MP+
Sbjct: 254 VDMYAKNGHFDVARQVFRMMPYR 276
>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
Length = 622
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/441 (32%), Positives = 245/441 (55%), Gaps = 2/441 (0%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D++SFP LL+A +S G LH I+ G ++++TAL++ YG D A +F
Sbjct: 181 DSFSFPCLLRACARVSCLPAGRALHAAAIRLGVHADLFIRTALIQFYGRCGVADAARALF 240
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++ ++W +++ A+ + G + A L D MP ++V +N+M+ GY + G + AR
Sbjct: 241 YQIDIPSEVSWTAIIVAYVNNGGIIDARALFDTMPQRNVVHWNVMVDGYVKCGDLEGARR 300
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD++P + + SLI Y AG ME A +F K+ ++V +W+ M++GY ++ E
Sbjct: 301 LFDEMPERTATACTSLIGGYAKAGNMEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEA 360
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL-ASNPHATTALID 247
+ FDE + + PD L V ++SAC+ LG++ + I Y T + +N H L++
Sbjct: 361 LRTFDEFQGQGIHPDELVVVGLMSACSQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVN 420
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
M AKCG++E++ +F V+DVF + +++ G LHG A+KL M + D+
Sbjct: 421 MNAKCGNLERATFLFESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAV 480
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
F +L+AC HAGLV+EG + F M+ + + EHY C+V+LLGR +L+ A LI +M
Sbjct: 481 FTIVLTACCHAGLVEEGKKFFDIMKNVYLMVPSGEHYACLVNLLGRCGMLEDAYWLIMSM 540
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P +P GALL C +H ++E+G AK + + + G + +N+YA+ +W +
Sbjct: 541 PGKPHPGAWGALLGGCKLHCNIELGKIAAKKL-FEIEPDNAGNYVSLSNMYANIDRWGDV 599
Query: 428 NRWRNMMNDTGIVKTAGSSVI 448
+ R M I K AG +++
Sbjct: 600 SEVRAEMTGKRITKIAGRTLV 620
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 96/258 (37%), Gaps = 36/258 (13%)
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD + +L ACA + L G +H A G+ ++ TALI Y +CG + + +
Sbjct: 180 PDSFSFPCLLRACARVSCLPAGRALHAAAIRLGVHADLFIRTALIQFYGRCGVADAARAL 239
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-----------DSCVKADDI---- 306
FY+ + W A+I+ +G A L M D VK D+
Sbjct: 240 FYQIDIPSEVSWTAIIVAYVNNGGIIDARALFDTMPQRNVVHWNVMVDGYVKCGDLEGAR 299
Query: 307 ------------TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL--- 351
L+ + AG ++ LF ++E R + + M+
Sbjct: 300 RLFDEMPERTATACTSLIGGYAKAGNMEAARLLFDKLED-----RDVFSWSAMISGYAQN 354
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
G R + + P E ++ L+SAC ++ + + + S +++ +
Sbjct: 355 GYPGEALRTFDEFQGQGIHPDELVVVGLMSACSQLGNIRLASWIEDYITKYSIDMNNAHV 414
Query: 412 MM-FANLYASCGQWEEAN 428
+ N+ A CG E A
Sbjct: 415 LAGLVNMNAKCGNLERAT 432
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 252/482 (52%), Gaps = 59/482 (12%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD------------AFKVFEKMPEKDIIA 78
++HG ++T V+V + LL + C+DD A+ +F ++ ++
Sbjct: 30 IIHGFLLRTHLISDVFVASRLLAL-----CVDDSTFNKPTNLLGYAYGIFSQIQNPNLFV 84
Query: 79 WNSMLDAFAS----------------------------------------CGQMDHAMKL 98
+N ++ F++ G+ H+ ++
Sbjct: 85 FNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHS-QI 143
Query: 99 IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAG 158
+ DV N ++ YA G I +A IF ++ +DVVSW S++ Y G +E A
Sbjct: 144 VRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAR 203
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
EMF +M +N+ TW+ M+ GY ++ + + +DLF+ MK V + + SV+S+CA+LG
Sbjct: 204 EMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLG 263
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+LE G R + Y + + N TAL+DM+ +CG IE+++ VF D W+++I
Sbjct: 264 ALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIK 323
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
GLA+HG+ + A+ +M D+TF +LSACSH GLV++G E++ M+KD G+
Sbjct: 324 GLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIE 383
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
+LEHYGC+VD+LGRA L A I M +P ILGALL AC I+++ E+ +RV M
Sbjct: 384 PRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNM 443
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ K G ++ +N+YA GQW++ R+MM + + K G S+IE++G +KF
Sbjct: 444 L-IKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFT 502
Query: 459 AG 460
G
Sbjct: 503 MG 504
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 151/315 (47%), Gaps = 44/315 (13%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
DN +FP L+KA+ + +G H Q ++ GF VYV+ +L+ MY + I A ++
Sbjct: 115 PDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRI 174
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F +M +D+++W SM+ + CG +++A ++ D MP +++ +++IMI+GYA+ A
Sbjct: 175 FGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAI 234
Query: 128 YIFDKVPAKDVVSWNSLILA---------------------------------------Y 148
+F+ + + VV+ +++++ +
Sbjct: 235 DLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMF 294
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G++EKA +F+ + + ++W++++ G + + F +M + P +T T
Sbjct: 295 WRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFT 354
Query: 209 SVLSACANLGSLETGARIHV-YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+VLSAC++ G +E G I+ D+G+ ++DM + G + ++ K V
Sbjct: 355 AVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHV 414
Query: 268 KDVFCWNAMILGLAL 282
K NA ILG L
Sbjct: 415 KP----NAPILGALL 425
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV A+ ++ + L + G + +K+ ++ + TAL+ M+
Sbjct: 240 MKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGD 299
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
I+ A VFE +PE D ++W+S++ A G AM ++I L + +F ++S
Sbjct: 300 IEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSA 359
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ G + I++ + + + ++ AG++ +A KM VK
Sbjct: 360 CSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAP 419
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD---YLTVTSVLSACA 215
+ G + EV + M VKP+ Y + S + ACA
Sbjct: 420 ILGALLGACKIYKNTEVAERVGNMLI-KVKPEHSGYYVLLSNIYACA 465
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/469 (33%), Positives = 248/469 (52%), Gaps = 11/469 (2%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLM--LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
+ A + + A G + SC + H + G + T MY S ID
Sbjct: 711 IKATESKYKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDA 770
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYAR 119
A VFE +P WN M+ FA+ G+ +++L M K D +F + A
Sbjct: 771 ASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAG 830
Query: 120 IGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ + + I + + D+ +L+ Y G++E A +F KM V+++++W +M
Sbjct: 831 LSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSM 890
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
++GY + E + FD M++ V P+ +++ SVL AC NLG+L G H Y G
Sbjct: 891 ISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGF 950
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ TA++DMY+KCGS++ + +F ++ KD+ CW+AMI +HG+G A+ L +
Sbjct: 951 EFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQ 1010
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + V+ +TF +LSACSH+GL++EG F M ++F + RKL +Y CMVDLLGRA
Sbjct: 1011 MVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAG 1070
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L A++LIE MP EP SI G+LL AC IH +L++ +++A + + + G ++ +
Sbjct: 1071 QLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHL-FHLDPVHAGYHVLLS 1129
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA+ +W E + R MM G K G S++E + HKF G H
Sbjct: 1130 NIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSH 1178
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 244/447 (54%), Gaps = 14/447 (3%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +HG I+ F G + + +LL +Y C A +F KMPEKD+I+W++M+ +A+
Sbjct: 225 GSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYAN 284
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW------- 141
+ A+ L M K ++ + + + +R + + + W
Sbjct: 285 NEAANEALNLFHEMIEKRFEPNSVTVVSALQACAV--SRNLEEGKKIHKIAVWKGFELDF 342
Query: 142 ---NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+LI Y ++A ++F+++ K+V++W +++GY ++ + + + +F M +
Sbjct: 343 SVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSD 402
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
++PD + V +L+A + LG + +H Y +G SN +LI++Y+KCGS+ +
Sbjct: 403 GIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDA 462
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSH 317
+++F V+DV W++MI +HG G AL++ +M +S V+ +++TF+ +LSACSH
Sbjct: 463 VKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSH 522
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
AGLV+EG ++F RM D+ + EH+G MVDLLGR L +A+++I MP + G
Sbjct: 523 AGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWG 582
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
ALL AC IH ++E+G+ AK + + G ++ +N+YA G+W+ R + +
Sbjct: 583 ALLGACRIHHNIEMGEAAAKNLFWLDPSHA-GYYILLSNIYAVDGKWDNVAELRTRIKER 641
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S++EV G H FLA H
Sbjct: 642 GLKKMFGQSMVEVRGGVHSFLASDRFH 668
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 203/417 (48%), Gaps = 16/417 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDD 63
G DN++ P+ LKA L +G ++HG K G ++V +AL+++Y + +
Sbjct: 98 GEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGE 157
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM-----ISGYA 118
A KVFE+ D + W SM+ + + A+ L M + D + + +S A
Sbjct: 158 ALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACA 217
Query: 119 RIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
++ + + + V + D+ NSL+ Y G + A +F KM K+VI+W+T
Sbjct: 218 QLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 277
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M+ Y ++ E ++LF EM +P+ +TV S L ACA +LE G +IH A G
Sbjct: 278 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKG 337
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
+ +TALIDMY KC ++++++F + KDV W A++ G A +G Y ++ +
Sbjct: 338 FELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFR 397
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
M ++ D + + +L+A S G+ Q+ L + + G + +++L +
Sbjct: 398 NMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKC 456
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIH----QDLEIGDRVAKMVCAKSNYLS 407
L A++L + M I ++++A IH + LEI D++ K + N ++
Sbjct: 457 GSLGDAVKLFKGMIVRDV-VIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVT 512
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 177/367 (48%), Gaps = 25/367 (6%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH Q KTG + T L +Y + A KVF++ P ++ WNS L ++ Q
Sbjct: 23 LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQ 82
Query: 92 MDHAMKLIDLMPL---KDVTSFNIMISGYA-------RIGK-IHSARYIFDKVPAKDVVS 140
+ ++L LM + +F I I+ A +GK IH D++ D+
Sbjct: 83 WEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEI-GSDMFV 141
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN- 199
++L+ Y+ G+M +A ++F++ + + W +MVTGY ++ E + LF +M +
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC 201
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V D +T+ SV+SACA L +++ G+ +H + +L+++YAK G + +
Sbjct: 202 VVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAA 261
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F K KDV W+ MI A + AL L EM + + + +T + L AC+ +
Sbjct: 262 NLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSR 321
Query: 320 LVQEGCEL-----FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
++EG ++ + E DF V+ L +D+ + D A++L + +P + S
Sbjct: 322 NLEEGKKIHKIAVWKGFELDFSVSTAL------IDMYMKCSCPDEAVDLFQRLPKKDVVS 375
Query: 375 ILGALLS 381
+ ALLS
Sbjct: 376 WV-ALLS 381
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 140/295 (47%), Gaps = 14/295 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ D ++FP LK+ LS G ++H + G ++V AL+ MY
Sbjct: 809 MMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGD 868
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI------ 114
I+ A VF+KM +D+++W SM+ +A G + DLM V + I
Sbjct: 869 IEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLA 928
Query: 115 ---SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G R G+ HS Y+ D++ +++ Y+ G ++ A +F + K+++
Sbjct: 929 CGNLGALRKGEWFHS--YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLV 986
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
W+ M+ Y + +DLFD+M V+P ++T T VLSAC++ G LE G
Sbjct: 987 CWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLM 1046
Query: 231 TDNGLASNPHATTA-LIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
T+ + + + A ++D+ + G + +++++ V+ D W +++ +H
Sbjct: 1047 TEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIH 1101
>gi|357119066|ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 588
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/502 (32%), Positives = 254/502 (50%), Gaps = 77/502 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ + V + ++F LL+A + +HGQ +K GF V VQ ALL +Y +C
Sbjct: 94 MRAVEVPPNGFTFTFLLRACEFSRILPLCRRIHGQILKCGFGRDVVVQNALLDVYH--KC 151
Query: 61 -----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS 115
+ DA +VF++M EKD+I+WNS++ + S G + AM+L ++MP ++V S+N +++
Sbjct: 152 SNPGYVGDARQVFDEMIEKDVISWNSIVGVYMSSGDVKGAMELFEVMPERNVVSWNTVVA 211
Query: 116 GYARIGKIHSARYIFDKVPA-------------------------------KDVVSWNSL 144
+AR+G + SA+ +FD++P KDVVSW ++
Sbjct: 212 SFARVGDMASAQAVFDRMPTRNAISWNLMISGYAAGGDVEAARSIFYQTDQKDVVSWTAM 271
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPD 203
I AY G ++ A E+F +M VKN+++WN M+TGY + Y E + F M G +PD
Sbjct: 272 ISAYAKIGNLDLAKELFDQMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPD 331
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T+ SV+SACA LGS E + + + N ALIDM+AKCG + ++ +F
Sbjct: 332 EATLVSVVSACAQLGSAEYCSWVSSFIRKNNNDLTVALGNALIDMFAKCGDVGRAQLIFS 391
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ + V W MI GL +G AL + +M V DD FI +L+ACSH G + E
Sbjct: 392 GMKSRCVITWTTMISGLGFNGQCREALLVYNDMCREGVGLDDTVFIAVLAACSHGGFLHE 451
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR-AIELIEAMPFEPTESILGALLSA 382
G +F +M + G+ ++EHYGC+VDLLGRA L++ + +++E PF + +L
Sbjct: 452 GWSIFRQMVELHGIKPRMEHYGCIVDLLGRAELIEYVSKKIVEIEPFSSSYQVL------ 505
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
+N A +W+ R +M D G+ K
Sbjct: 506 -------------------------------VSNCGALKERWDCVTDARTIMRDFGMEKV 534
Query: 443 AGSSVIEVNGSYHKFLAGGIGH 464
GSS I+V+ H+FLA H
Sbjct: 535 PGSSSIQVDREVHEFLAKDTRH 556
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
LR + + + + M+A V P+ T T +L AC L RIH G +
Sbjct: 79 LRGRGPEDALTAYTAMRAVEVPPNGFTFTFLLRACEFSRILPLCRRIHGQILKCGFGRDV 138
Query: 240 HATTALIDMYAKC---GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
AL+D+Y KC G + + +VF + KDV WN+++ G A++L M
Sbjct: 139 VVQNALLDVYHKCSNPGYVGDARQVFDEMIEKDVISWNSIVGVYMSSGDVKGAMELFEVM 198
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+ V +++ ++++ + G + +F RM ++ L
Sbjct: 199 PERNV----VSWNTVVASFARVGDMASAQAVFDRMPTRNAISWNL 239
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 166/499 (33%), Positives = 258/499 (51%), Gaps = 41/499 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF-----------------CGHV-- 45
G DN++FP +LKA L G +H +K G+ CG +
Sbjct: 87 GARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGD 146
Query: 46 --YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+ AL+ MY L +DD+ +FE ++D+++WN+M+ +F+ + A+ LM
Sbjct: 147 KTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMV 206
Query: 104 LKDVTSFNIMISGY----ARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEM 154
L+ V + I+ + + ++ + I V + + NS L+ Y N ++
Sbjct: 207 LEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQV 266
Query: 155 EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSA 213
E +F +L + + WN M++GY R+ L + + LF EM K + P+ T+ SV+ A
Sbjct: 267 ESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPA 326
Query: 214 CAN-LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
C + L ++ G IH YA N LAS+ +AL+DMYAKCG + S VF + K+V
Sbjct: 327 CVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVIT 386
Query: 273 WNAMILGLALHGYGYAALKLLGEM-----NDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
WN +I+ +HG G AL+L M K +++TFI + +ACSH+GL+ EG L
Sbjct: 387 WNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNL 446
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE-SILGALLSACVIH 386
F RM+ D GV +HY C+VDLLGRA L+ A EL+ MP E + +LL AC IH
Sbjct: 447 FYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIH 506
Query: 387 QDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445
Q++E+G+ AK ++ + N S ++ +N+Y+S G W +A R M G+ K G
Sbjct: 507 QNVELGEVAAKNLLHLEPNVAS--HYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGC 564
Query: 446 SVIEVNGSYHKFLAGGIGH 464
S IE HKF+AG + H
Sbjct: 565 SWIEFRDEVHKFMAGDVSH 583
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 122/332 (36%), Gaps = 59/332 (17%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
++ +W + RS + E + + EM +PD +VL A + L L+TG +I
Sbjct: 55 RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114
Query: 227 H---------------------VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
H +Y G+ AL+ MYAK G ++ S +F
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+D+ WN MI + AL M V+ D +T +L ACSH + G
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234
Query: 326 ELFS-------------------------------RMEKDFGVTRKLEHYGCMVDLLGRA 354
E+ + R D + R++E + M+ R
Sbjct: 235 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 294
Query: 355 RLLDRA----IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
L ++A IE+I+ P + + +++ ACV H I A N L+
Sbjct: 295 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACV-HSLAAIAKGKEIHAYAIRNMLASDI 353
Query: 411 LM--MFANLYASCGQWEEANRWRNMMNDTGIV 440
+ ++YA CG + R N M + ++
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMPNKNVI 385
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/479 (32%), Positives = 251/479 (52%), Gaps = 44/479 (9%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H + + GF + V TAL+ MYG +A +VF+KM ++D+++WN M+ +
Sbjct: 226 GRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQ 285
Query: 89 CGQMDHAMKL---IDLMPLKDVTSFNIMISG----------------------------- 116
G A++L +D+ K + + I G
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAV 345
Query: 117 -------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG---EMEKAGEMFKKMLV 166
YA+ G + AR +F+ + +D V+W++LI AY + G + KA ++F ++
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGS 405
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLETGAR 225
++ I WN M+T Y+++ + + +F EM A +KPD +T +VL ACA+LG L
Sbjct: 406 RDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKA 465
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H +++ L SN T LI+MYA+CGS+E++ +F ++ K V W AM+ + +G
Sbjct: 466 LHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGR 525
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
AL L EM+ VK DD+T+ +L C+H G +++G F+ M + G+ +H+
Sbjct: 526 YAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFA 585
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
MVDLLGR+ L A EL+E+MPFEP L+AC IH LE+G+ A+ V + +
Sbjct: 586 AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERV-YELDP 644
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S + +N+YA+ G WE+ R M + G+ K G S IEV+G H+F +GG H
Sbjct: 645 SSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYH 703
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 175/363 (48%), Gaps = 49/363 (13%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+ +F +L G SS G +H + +G + AL+ MY + DA
Sbjct: 105 GLGTDHVTFVSVL---GACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDA 161
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIMISGYAR 119
++F+ + +D +WN+++ A + G A+++ D+ P + T++ +ISG++
Sbjct: 162 KRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKP--NSTTYINVISGFST 219
Query: 120 IGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ R I ++ A D+V +LI Y G +A E+F KM +++++WN M
Sbjct: 220 PEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVM 279
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ Y+++ + E ++L+ ++ K T S+L AC+++ +L G +H + + GL
Sbjct: 280 IGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL 339
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVF-----------------YKSQ------------ 266
S TAL++MYAKCGS+E++ +VF Y S
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399
Query: 267 -----VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC-VKADDITFIGLLSACSHAGL 320
+D CWNAMI +G AA+K+ EM + +K D +TFI +L AC+ G
Sbjct: 400 FDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459
Query: 321 VQE 323
+ E
Sbjct: 460 LSE 462
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 177/368 (48%), Gaps = 9/368 (2%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
DN +F +L + G LH + + F V AL+ MYG + DA
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63
Query: 67 VFEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-TSFNIMISGYARIGKI 123
VFE M ++++++WN+M+ A+A G A+ L M L+ + T +S +
Sbjct: 64 VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123
Query: 124 HSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
R I ++V + S+ N+L+ Y G + A MF+ + ++ +WN ++ +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+S + + +F EMK ++KP+ T +V+S + L G +IH NG S+
Sbjct: 184 SQSGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDL 242
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TALI+MY KCGS ++ EVF K + +D+ WN MI +G + AL+L +++
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDME 302
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K TF+ +L ACS + +G + S + + G+ ++ +V++ + L+
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHI-LERGLDSEVAVATALVNMYAKCGSLEE 361
Query: 360 AIELIEAM 367
A ++ AM
Sbjct: 362 ARKVFNAM 369
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 162/387 (41%), Gaps = 57/387 (14%)
Query: 99 IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEM 154
+D P D +F ++ + G + R + +++ +D + N+LI Y +
Sbjct: 1 MDRQP--DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSL 58
Query: 155 EKAGEMFKKM--LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
A +F+ M +NV++WN M+ Y ++ E + L+ M + D++T SVL
Sbjct: 59 VDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLG 118
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
AC+ SL G IH +GL S AL+ MYA+ GS+ + +F Q +D
Sbjct: 119 ACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS 175
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSC-VKADDITFIGLLSACS-----------HAGL 320
WNA+IL + G AL++ EM C +K + T+I ++S S HA +
Sbjct: 176 WNAVILAHSQSGDWSGALRIFKEMK--CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEI 233
Query: 321 V------------------------QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
V E E+F +M+K R + + M+ +
Sbjct: 234 VANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKK-----RDMVSWNVMIGCYVQNGD 288
Query: 357 LDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
A+EL + + F+ T++ ++L AC + L G V + +
Sbjct: 289 FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIV 440
N+YA CG EEA + N M + V
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAV 375
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 108/271 (39%), Gaps = 40/271 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D +F +L+A L LH Q ++ +V V L+ MY +++A
Sbjct: 439 GLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEA 498
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
++F EK +++W +M+ AF+ G+ A+ L M L+ V
Sbjct: 499 ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKP--------------- 543
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTMVTGY 179
D V++ S++ T+ G +E+ F M L + MV
Sbjct: 544 ------------DDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLL 591
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG--ARIHVYATDNGLAS 237
RS + +L + M +PD + + L+AC G LE G A VY D S
Sbjct: 592 GRSGRLFDAKELLESMP---FEPDPVAWMTFLTACRIHGKLELGEAAAERVYELD---PS 645
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
+ A+ ++YA G E+ V K + +
Sbjct: 646 STAPYIAMSNIYAAHGMWEKVASVRKKMEER 676
>gi|357114699|ref|XP_003559133.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 640
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 235/413 (56%), Gaps = 6/413 (1%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
T ++K Y DA +F++MP+++ +WN+++ G++D A++L + MP ++V
Sbjct: 197 TVMVKAYADGGYFQDAMGLFDRMPQRNSYSWNAVISGSFRAGRVDEAVRLFERMPHRNVV 256
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+ M++G A+ G++ AR FD +P KD+ +WN++I AY N GEM +A +F M K+
Sbjct: 257 SWTAMVTGLAQNGRVSMAREFFDVMPCKDITAWNAMITAYANNGEMNEARRLFDSMPAKD 316
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+++WNT++ GY + +L E LF +M P+ T+ SVL ++ + +IH
Sbjct: 317 LVSWNTVIDGYAKKELKDEASGLFLDMLRSAASPNSTTLISVLVISESMVEV---VQIHG 373
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
AT GL S AL+ MY++ G + + F + + KD W +MI A HG+
Sbjct: 374 LATTLGLLSETSLGNALLTMYSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFANHGHASY 433
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL+ +M + TF +LSACSHAGLV+EG +F + +G+ R +EHY C++
Sbjct: 434 ALQAFAQMLEHGKNPSSTTFTAVLSACSHAGLVEEGKSVFRSIRHVYGLERTIEHYTCLI 493
Query: 349 DLLGRARLLDRAIELIEAMPFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
D+LGRA + A++++ AMP + ++IL LL AC++H++++ V +++ S
Sbjct: 494 DILGRAGNMREAMDVVNAMPPDICDDAILRTLLGACMMHKEVDAAREVGEVLAKSDPSGS 553
Query: 408 DGELMMFANLYASCGQWEE-ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
G M+ AN+ AS G W+E A+ W+ M + + KT G S I V+ H F +
Sbjct: 554 GGYYMVLANVLASGGLWDEMADVWK-AMKGSNVRKTPGVSQITVDARNHAFFS 605
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 128/262 (48%), Gaps = 8/262 (3%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
+L Y + A ++F+ M + ++AW M+DA+ G++ A +L D MP + V S+
Sbjct: 106 MLAGYAKAGRVHRARRLFDGMLTRGVVAWTCMVDAYCRAGRVSEARELFDAMPERSVVSW 165
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
M+ GYAR G AR +FD++P ++VVSW ++ AY + G + A +F +M +N
Sbjct: 166 TAMMHGYARAGMPREAREMFDRMPERNVVSWTVMVKAYADGGYFQDAMGLFDRMPQRNSY 225
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN +++G R+ E V LF+ M NV ++ T++++ A G +
Sbjct: 226 SWNAVISGSFRAGRVDEAVRLFERMPHRNV----VSWTAMVTGLAQNGRVSMAREFF--- 278
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
D + A A+I YA G + ++ +F KD+ WN +I G A A
Sbjct: 279 -DVMPCKDITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVIDGYAKKELKDEAS 337
Query: 291 KLLGEMNDSCVKADDITFIGLL 312
L +M S + T I +L
Sbjct: 338 GLFLDMLRSAASPNSTTLISVL 359
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 20/233 (8%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C + A++ Y + +++A ++F+ MP KD+++WN+++D +A D A L
Sbjct: 283 CKDITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVIDGYAKKELKDEASGLFLD 342
Query: 102 MPLKDVTSFN--------IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE 153
M L+ S N ++ + +IH + + N+L+ Y+ G+
Sbjct: 343 M-LRSAASPNSTTLISVLVISESMVEVVQIHGLATTLGLLSETSL--GNALLTMYSRIGD 399
Query: 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213
+ A FK++ K+ ITW +M+ + + F +M P T T+VLSA
Sbjct: 400 LPSAWLAFKRLEEKDAITWTSMIQAFANHGHASYALQAFAQMLEHGKNPSSTTFTAVLSA 459
Query: 214 CANLGSLETGARI-----HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
C++ G +E G + HVY GL T LID+ + G++ ++++V
Sbjct: 460 CSHAGLVEEGKSVFRSIRHVY----GLERTIEHYTCLIDILGRAGNMREAMDV 508
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 22 ILSSSCIGLM-LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80
++S S + ++ +HG G + ALL MY + + A+ F+++ EKD I W
Sbjct: 360 VISESMVEVVQIHGLATTLGLLSETSLGNALLTMYSRIGDLPSAWLAFKRLEEKDAITWT 419
Query: 81 SMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK 136
SM+ AFA+ G +A++ M T+F ++S + G + + +F + +
Sbjct: 420 SMIQAFANHGHASYALQAFAQMLEHGKNPSSTTFTAVLSACSHAGLVEEGKSVFRSI--R 477
Query: 137 DVVSWNSLILAYTNAGE-MEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
V I YT + + +AG M + M V N + + LR+ L
Sbjct: 478 HVYGLERTIEHYTCLIDILGRAGNMREAMDVVNAMPPDICDDAILRTLL 526
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/438 (34%), Positives = 253/438 (57%), Gaps = 11/438 (2%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
H K H + +L+ +Y L A KVF +P +D+++WN+M+ A+ G
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210
Query: 93 DHAMKLI-----DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVVSWNS 143
+++ D + + + ++++ G + R++ + + D + ++
Sbjct: 211 GEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSA 270
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ Y GE+ +A +F ++ K+V+ WN M+TGY ++ + E + LF MK V PD
Sbjct: 271 LVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPD 330
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T+ VLSAC+ +G+LE G+ + YA+ GL +N + TAL+DMYAKCG +++++EVF
Sbjct: 331 KITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFR 390
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQ 322
K + K+V WNA+I GLA +G G A++ M N+ +K DDITFIG+LSAC HAGLV+
Sbjct: 391 KMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVK 450
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
+G F+ + +F + K+EHY CMVDLL R+ L+ + IE +P + +LGALL+A
Sbjct: 451 DGKRWFNSLTSEFQIIPKIEHYSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLAA 510
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C +++EIG+RV + + + ++ + +YAS G+ +++ + R M + G+ KT
Sbjct: 511 CRKCKNVEIGERVINRII-QLEPTNSWNYVVSSKIYASSGRLDDSAKMRGPMRERGVNKT 569
Query: 443 AGSSVIEVNGSYHKFLAG 460
G S +E++G +F AG
Sbjct: 570 PGCSWVEISGKVLEFYAG 587
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 34/231 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ GV D + +L A + + +G L G G +VYV TAL+ MY
Sbjct: 322 MKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGD 381
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A +VF KM K++ +WN+++ A GQ D A++ +LM +D
Sbjct: 382 LDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLK----------- 430
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
D +++ ++ A +AG ++ F + ++ + ++ M
Sbjct: 431 ---------------PDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCM 475
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
V RS EV D +++ K D + + ++L+AC ++E G R+
Sbjct: 476 VDLLARSGHLEEVWDFIEKIPD---KVDAVMLGALLAACRKCKNVEIGERV 523
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 164/484 (33%), Positives = 268/484 (55%), Gaps = 24/484 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++L ++ SFP +KA L G H Q G+ ++V +AL+ MY +
Sbjct: 67 MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL----------------IDLMPL 104
++DA KVF+++P++DI++W SM+ + G A+ L +D M L
Sbjct: 127 LEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGL 186
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE--MEKAGEMFK 162
V S + IHS ++ + + V N+L+ AY GE + A ++F
Sbjct: 187 VSVISACSRVPAKGLTESIHS--FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFD 244
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLE 221
+++ K+ +++N++++ Y +S + E ++F + K V + +T+++VL A ++ G+L
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALR 304
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G IH GL + T++IDMY KCG +E + + F + + K+V W AMI G
Sbjct: 305 IGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYG 364
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+HG+ AL+L M DS V+ + ITF+ +L+ACSHAGL EG F+ M+ FGV L
Sbjct: 365 MHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGL 424
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVC 400
EHYGCMVDLLGRA L +A +LI+ M +P I +LL+AC IH+++E+ + VA++
Sbjct: 425 EHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFE 484
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
S+ G M+ +++YA G+W++ R R +M + G+VK G S++E+NG H FL G
Sbjct: 485 LDSSNC--GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIG 542
Query: 461 GIGH 464
H
Sbjct: 543 DEEH 546
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S +L E + +F + + K +V +WN+++ RS E + F M+ ++
Sbjct: 14 SRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLY 73
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P + + AC++L + +G + H A G S+ ++ALI MY+ CG +E + +V
Sbjct: 74 PTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKV 133
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM------NDSCVKADDITFIGLLSAC 315
F + +D+ W +MI G L+G A+ L ++ +D + D + + ++SAC
Sbjct: 134 FDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193
Query: 316 SH 317
S
Sbjct: 194 SR 195
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 127/278 (45%), Gaps = 22/278 (7%)
Query: 67 VFEKMPEK-DIIAWNSMLDAFASCGQMDHA------MKLIDLMPLKDVTSFNIMISGYAR 119
+F + +K D+ +WNS++ A G A M+ + L P + +SF I +
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTR--SSFPCAIKACSS 88
Query: 120 IGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ I S + + D+ ++LI+ Y+ G++E A ++F ++ +++++W +M
Sbjct: 89 LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSM 148
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKP------DYLTVTSVLSACANLGSLETGARIHVY 229
+ GY + ++ V LF ++ D + + SV+SAC+ + + IH +
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208
Query: 230 ATDNGLASNPHATTALIDMYAKCGS--IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
G L+D YAK G + + ++F + KD +N+++ A G
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268
Query: 288 AALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEG 324
A ++ + + V + IT +L A SH+G ++ G
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG 306
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 220/353 (62%), Gaps = 1/353 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++ Y++ G++ A +FD++ ++ VSWN++I GE+ +A +F +M ++ I+W
Sbjct: 133 LVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISW 192
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+M+ G+++ + + ++ F EM+ V+PDY+T+ SVL+ACANLG+L G I+ +
Sbjct: 193 TSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMK 252
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N + +LIDMY++CG I + +VF + + + WN+MI+G AL+G+ AL+
Sbjct: 253 QDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEF 312
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M + D ++F G L+ACSH+GLV EG + F M++ ++ ++EHYGC+VDL
Sbjct: 313 FNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYS 372
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L+ A+ +I MP +P E +LG+LL+AC H D+ + +R+ K +C + + SD +
Sbjct: 373 RAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKYLC-EVDPGSDSNYV 431
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
+ +N+YA+ G+W+ A++ R M GI K G S IE++GS H+F+AG H+
Sbjct: 432 LLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSIHEFVAGDKTHV 484
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 129/353 (36%), Gaps = 109/353 (30%)
Query: 1 MQELGVHADNYSFPLLLKAAG--ILSSSCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGS 57
MQ GV ++ +F LL A L G +H K G +V V TAL+ MY
Sbjct: 80 MQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSK 139
Query: 58 LRCID-------------------------------DAFKVFEKMPEKDIIAWNSMLDAF 86
+D +A +F++M E+D I+W SM+ F
Sbjct: 140 CGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGF 199
Query: 87 ASCGQMDHAMKLIDLMPLKDVTS------------------------------------- 109
G + A++ M L V
Sbjct: 200 VKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNI 259
Query: 110 --FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
N +I Y+R G I AR +F+++P + +VSWNS+I+ + G E
Sbjct: 260 KISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAE------------ 307
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-I 226
E ++ F+ M+ +PD ++ T L+AC++ G ++ G +
Sbjct: 308 -------------------EALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFF 348
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+ ++ L+D+Y++ G +E +L V +K N ++LG
Sbjct: 349 DIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKP----NEVVLG 397
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 13/189 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + +L A L + +GL ++ +K F ++ + +L+ MY C
Sbjct: 215 MQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGC 274
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
I A +VFE+MP++ +++WNSM+ FA G + A++ +LM + D SF ++
Sbjct: 275 IRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTA 334
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ G + FD + +S + L+ Y+ AG +E A + M +K
Sbjct: 335 CSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKP--- 391
Query: 172 WNTMVTGYL 180
N +V G L
Sbjct: 392 -NEVVLGSL 399
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 202/327 (61%), Gaps = 1/327 (0%)
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V N+L+ Y G E A ++F+ M +N++TWN+++ GY + E + LF EM
Sbjct: 30 VFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGL 89
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V+PD T+ S+LSACA LG+L G R HVY GL N HA AL+D+YAKCGSI Q
Sbjct: 90 RGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQ 149
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +VF + + K V W ++I+GLA++G+G AL+L E+ + +ITF+G+L ACSH
Sbjct: 150 AHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 209
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
G+V EG + F RM++++G+ K+EHYGCMVDLLGRA L+ +A E I+ MP +P +
Sbjct: 210 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWR 269
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
LL AC IH L +G+ VA+ + G+ ++ +NLYAS +W + ++ R M
Sbjct: 270 TLLGACTIHGHLALGE-VARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLRE 328
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ KT G S++E+ H+F+ G H
Sbjct: 329 GVKKTPGHSLVELRNRLHEFVMGDRSH 355
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 132/267 (49%), Gaps = 10/267 (3%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H I+ GF V+VQ L+ MY + + A K+FE M E++++ WNS+++ +A
Sbjct: 14 GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYAL 73
Query: 89 CGQMDHAMKLIDLMPLKDVTS--FNI--MISGYARIGKIHSAR----YIFDKVPAKDVVS 140
G+ + A+ L M L+ V F + ++S A +G + R Y+ ++ +
Sbjct: 74 NGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHA 133
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
N+L+ Y G + +A ++F +M K+V++W +++ G + E ++LF E++ +
Sbjct: 134 GNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGL 193
Query: 201 KPDYLTVTSVLSACANLGSLETG-ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
P +T VL AC++ G ++ G + G+ ++D+ + G ++Q+
Sbjct: 194 MPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAH 253
Query: 260 EVFYKSQVK-DVFCWNAMILGLALHGY 285
E ++ + W ++ +HG+
Sbjct: 254 EFIQNMPMQPNAVVWRTLLGACTIHGH 280
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
A A L + G ++H A NG S L+ MYA CG E + ++F +++
Sbjct: 4 AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 63
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
WN++I G AL+G AL L EM V+ D T + LLSAC+ G + G M
Sbjct: 64 WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 123
Query: 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
K G+ L ++DL + + +A ++ + M
Sbjct: 124 K-VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEM 157
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 10/182 (5%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D ++ LL A L + +G H +K G G+++ ALL +Y I A
Sbjct: 91 GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQA 150
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG--YA--RI 120
KVF++M EK +++W S++ A G A++L + K + I G YA
Sbjct: 151 HKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHC 210
Query: 121 GKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
G + F ++ + + + ++ AG +++A E + M ++ N + W T
Sbjct: 211 GMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRT 270
Query: 175 MV 176
++
Sbjct: 271 LL 272
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/489 (31%), Positives = 245/489 (50%), Gaps = 48/489 (9%)
Query: 23 LSSSCI-------GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
L SCI G +H +GF +++ LL+MY + D+ K+F++MPE+D
Sbjct: 76 LIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERD 135
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD---- 131
+ +WN ++ +A G + A L D MP +D S+ MISGY R + + A +F
Sbjct: 136 LCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKR 195
Query: 132 -------------------KVPA-----------------KDVVSWNSLILAYTNAGEME 155
VP D V W++L Y G +E
Sbjct: 196 SDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIE 255
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
+A +F KM+ ++++TW M+ Y + E DLF ++ ++P+ T + VL+ACA
Sbjct: 256 EARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACA 315
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
N S E G ++H Y T G A +AL+ MY+KCG++ + VF ++ D+F W +
Sbjct: 316 NQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTS 375
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
+I G A +G A++ + S + D ITF+G+LSAC+HAGLV +G + F +++ +
Sbjct: 376 LIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQY 435
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395
G+T +HY C++DLL R+ D A +I M +P + + +LL C IH +L++ R
Sbjct: 436 GLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRA 495
Query: 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYH 455
A+ + + + + AN+YA+ G W E + R M+D G+VK G S I + H
Sbjct: 496 AEALF-EIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVH 554
Query: 456 KFLAGGIGH 464
FL G H
Sbjct: 555 VFLVGDDSH 563
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 107/254 (42%), Gaps = 36/254 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + ++F +L A +S +G +HG + GF + +AL+ MY + A
Sbjct: 299 GIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSA 358
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+VF++ P+ D+ +W S++ +A GQ D A++ +L+ +K T
Sbjct: 359 ERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELL-VKSGTQ--------------- 402
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTMVTGY 179
D +++ ++ A +AG ++K + F + L + ++
Sbjct: 403 -----------PDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLL 451
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
RS + E ++ +M ++KPD S+L C G+L+ R A NP
Sbjct: 452 ARSGQFDEAENIISKM---SMKPDKFLWASLLGGCRIHGNLKLAQRA-AEALFEIEPENP 507
Query: 240 HATTALIDMYAKCG 253
L ++YA G
Sbjct: 508 ATYVTLANIYATAG 521
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KP ++++ +C L+ G ++H + +G L++MYAKC S+ S +
Sbjct: 67 KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F + +D+ WN +I G A G A L +M + D+ ++ ++S
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPER----DNFSWTAMISGYVRHDR 182
Query: 321 VQEGCELFSRMEK 333
E ELF M++
Sbjct: 183 PNEALELFRMMKR 195
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/503 (30%), Positives = 262/503 (52%), Gaps = 40/503 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G ++ ++ +L A + G LH + ++ C VY L+ MY
Sbjct: 237 MWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGR 296
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM---PL------------- 104
++ A +VF+ + E + ++W S++ A G + A+ L + M P+
Sbjct: 297 LESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGV 356
Query: 105 ----KDVT-------------------SFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
KD++ N +++ YA+ G + A + F+ +P +D++SW
Sbjct: 357 CLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISW 416
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
++I A++ AG++EKA E F KM +NVI+WN+M+ Y++ + E + ++ +M VK
Sbjct: 417 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D++T ++ +SACA+L L G +I A G +SN +++ MY++CG IE++ ++
Sbjct: 477 TDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKM 536
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F +K++ WNAM+ G A +G G +++ +M + D I+++ +LS CSH+G V
Sbjct: 537 FSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFV 596
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
EG F M KD G++ EH+ CMVDLLGRA L++A LI MPF+P +I GALL+
Sbjct: 597 SEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLA 656
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH + ++ + K + + + G + AN+Y+ G+ + R +M D G+ K
Sbjct: 657 ACRIHGNTKLAELAVKNLL-ELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRK 715
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
G S IEV+ H F H
Sbjct: 716 NPGCSWIEVDNRVHVFTVDDTNH 738
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 161/347 (46%), Gaps = 48/347 (13%)
Query: 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI 76
+K L S I LH Q I G +++Q LL MY + I DA++VF + ++
Sbjct: 11 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS----------- 125
+WN+M+ FA GQM A KL + MP +D S+N M+SGY G++ +
Sbjct: 71 YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYL 130
Query: 126 -------------------------------------ARYIFDKVPAKDVVSWNSLILAY 148
A+ +F + P + WNS+I Y
Sbjct: 131 KLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGY 190
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
+ G ++KA E+F KM ++ ++WNTM++ + E ++ F EM +P+ +T
Sbjct: 191 SKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYA 250
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
SVLSAC ++ LE GA +H + +A LIDMYAKCG +E + +VF
Sbjct: 251 SVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEH 310
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+ W ++I G+A G+ AL L +M + V +D T +L C
Sbjct: 311 NAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVC 357
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 180/421 (42%), Gaps = 71/421 (16%)
Query: 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI 76
+KA+G L + L LHG K F V+T++L MY +D A KVF + P +
Sbjct: 121 IKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSL 180
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG--------------- 121
WNSM+ ++ G + A++L MP +D S+N MIS ++ G
Sbjct: 181 FCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQ 240
Query: 122 --KIHSARY---------IFD-------------KVPAKDVVSWNSLILAYTNAGEMEKA 157
+ +S Y I+D P DV + LI Y G +E A
Sbjct: 241 GFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESA 300
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
++F + N ++W +++ G ++ E + LF++M+ V D T+ +VL C +
Sbjct: 301 RQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQ 360
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKC------------------------- 252
+ G ++H + GL S+ AL+ MYAKC
Sbjct: 361 KDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMI 420
Query: 253 ------GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
G +E++ E F K ++V WN+M+ GY LK+ +M VK D I
Sbjct: 421 TAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWI 480
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
TF +SAC+ ++ G ++ ++ EK G + + +V + R ++ A ++ +
Sbjct: 481 TFSTSISACADLAVLILGNQILAQAEK-LGFSSNVSVANSVVTMYSRCGQIEEAQKMFSS 539
Query: 367 M 367
+
Sbjct: 540 I 540
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 166/394 (42%), Gaps = 86/394 (21%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +++ Y+ G I A +F + +V SWN++I + ++G+M +A ++F+KM ++ +
Sbjct: 43 NHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSV 102
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN+M++GY + E++A + A +LG L+ ++H +A
Sbjct: 103 SWNSMMSGYFHN----------GELEA------------TIKASGSLGYLKLALQLHGFA 140
Query: 231 TDNGLASNPHATTALIDMYAKCG-------------------------------SIEQSL 259
+ T+++DMY KCG S++++L
Sbjct: 141 EKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKAL 200
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS--- 316
E+F K +D WN MI L+ HG+G L EM + + + +T+ +LSAC+
Sbjct: 201 ELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIY 260
Query: 317 --------HAGLVQ--------EGCELFS------RMEKDFGVTRKL-EH----YGCMVD 349
HA +V+ GC L R+E V L EH + ++
Sbjct: 261 DLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIG 320
Query: 350 LLGRARLLDRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
+ +A + A+ L M P + L +L C+ +D+ IG+++ +
Sbjct: 321 GVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDS 380
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
S +YA CG +AN +M I+
Sbjct: 381 SVPVANALVTMYAKCGDVWKANHAFELMPIRDII 414
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
+ CA+L S+ ++H GL S+ L++MY+ CG I + VF +V
Sbjct: 11 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+ WN MI G A G A KL +M + D +++ ++S H G
Sbjct: 71 YSWNTMISGFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNG 115
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/469 (31%), Positives = 250/469 (53%), Gaps = 14/469 (2%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
DNYS + + AA + S +G H ++K +V AL+ MY S A V
Sbjct: 92 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 151
Query: 69 EKMPE--KDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNIMI----SGY 117
+ P D+++WN+++ + G + A++ M L +VT N+++ +G
Sbjct: 152 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGA 211
Query: 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
++G + A + + + +SL+ Y G +E+A +F +M +NV+ W +M+
Sbjct: 212 MKVGSLCHALVVLNGFEINCYIG-SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIA 270
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G +S + E VDLF +M+ VK D T+ +V+S+C +G+L+ G +H Y +GL
Sbjct: 271 GCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGK 330
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+LIDMY+KCG + ++ ++F+ +DVF W MI+G A++G AL L +M
Sbjct: 331 ELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQME 390
Query: 298 -DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ V +++ F+G+L+ACSH GLV++G F RM K + + ++EHYGCMVDLLGRA+L
Sbjct: 391 GEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKL 450
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L A + I+ MP P + +LL AC + + + A+ + G +++ +N
Sbjct: 451 LAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL-SN 509
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
+YA+ +W + N R M ++ K G S IEV+G H+F AG H
Sbjct: 510 VYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHF 558
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
N+ D ++ +SA A + SL+ G++ H + LAS+ ALI+MY+ C
Sbjct: 87 ANMTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPAS 146
Query: 258 SLEVFYKSQ--VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+ V + DV WN +I G G AL+ +M V+ D++T + +L AC
Sbjct: 147 ARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVAC 206
Query: 316 SHAGLVQEG 324
+ G ++ G
Sbjct: 207 ARTGAMKVG 215
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 34/225 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV AD+ + ++ + G + + +G LH G + V+ +L+ MY
Sbjct: 288 MQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGD 347
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A+++F + ++D+ W M+ FA G A+ L M +
Sbjct: 348 VNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGE--------------- 392
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
DKV +V+ + ++ A ++ G +E+ F +M LV + + M
Sbjct: 393 ----------DKVMPNEVI-FLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCM 441
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
V R++L E +M V PD + S+L AC G +
Sbjct: 442 VDLLGRAKLLAEAEQFIKDMP---VAPDVVVWRSLLFACRASGQV 483
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 244/459 (53%), Gaps = 20/459 (4%)
Query: 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIA 78
A+G+LS +HG +K GF V +L++MY SL + DA K+F +M KD ++
Sbjct: 307 ASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMS 366
Query: 79 WNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS---------GYARIG-KIHSARY 128
W +M+ + G D A+++ LM L +V+ ++ I+ G +G K+H
Sbjct: 367 WTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQ 426
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+K + VV N+L+ Y + ++KA E+FK M K+V++W++M+ G+ + E
Sbjct: 427 --NKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEA 484
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ F M G+VKP+ +T + LSACA G+L +G IH Y G+ S + AL+D+
Sbjct: 485 LYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDL 543
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
Y KCG + F KDV WN M+ G HG G AL L +M + D++TF
Sbjct: 544 YVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTF 603
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ LL ACS AG+V +G ELF M + F + L+HY CMVDLL R L A LI MP
Sbjct: 604 VALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMP 663
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL---MMFANLYASCGQWE 425
+P ++ GALL+ C IH+ +E+G+ AK++ L ++ ++ +LY G+W
Sbjct: 664 IKPDAAVWGALLNGCRIHRHVELGELAAKVILE----LEPNDVAYHVLLCDLYTDAGKWA 719
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R R M + G+ + G S +EV G H FL H
Sbjct: 720 QVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESH 758
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 172/333 (51%), Gaps = 13/333 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D Y+FP +L+ G + +G +H ++ GF V V AL+ MY I A
Sbjct: 192 GMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSFNIMI 114
KVF+ M D I+WN+M+ + + ++L +LM + VT + M+
Sbjct: 252 RKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGML 311
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
S ++H + + A DV NSLI YT+ G M AG++F +M K+ ++W
Sbjct: 312 SEVGFAKEMHG--FAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTA 369
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M++GY ++ + ++++ M+ NV PD +T+ S L+ACA LG L+ G ++H A + G
Sbjct: 370 MISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKG 429
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
AL++MYAK I++++EVF KDV W++MI G + + AL
Sbjct: 430 FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFR 489
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
M VK + +TFI LSAC+ G ++ G E+
Sbjct: 490 YMLGH-VKPNSVTFIAALSACAATGALRSGKEI 521
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 171/355 (48%), Gaps = 19/355 (5%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL---- 104
A+L M I A++VF KMPE+D+ +WN M+ + G ++ A+ L M
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194
Query: 105 KDVTSFNIMISGYA-----RIGK---IHSARYIF-DKVPAKDVVSWNSLILAYTNAGEME 155
DV +F ++ R+G+ H R+ F D+V DV+ N+L+ Y G++
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEV---DVL--NALVTMYAKCGDIV 249
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
A ++F M V + I+WN M+ G+ + ++LF M V+P+ +T+TSV A
Sbjct: 250 AARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASG 309
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
L + +H +A G A + +LI MY G + + ++F + + KD W A
Sbjct: 310 MLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTA 369
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
MI G +G+ AL++ M V DD+T L+AC+ G + G +L + ++
Sbjct: 370 MISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKL-HELAQNK 428
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390
G R + ++++ +++ +D+AIE+ + M + S + C H+ E
Sbjct: 429 GFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFE 483
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/469 (31%), Positives = 250/469 (53%), Gaps = 14/469 (2%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
DNYS + + AA + S +G H ++K +V AL+ MY S A V
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63
Query: 69 EKMPE--KDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNIMI----SGY 117
+ P D+++WN+++ + G + A++ M L +VT N+++ +G
Sbjct: 64 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGA 123
Query: 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
++G + A + + + +SL+ Y G +E+A +F +M +NV+ W +M+
Sbjct: 124 MKVGSLCHALVVLNGFEINCYIG-SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIA 182
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G +S + E VDLF +M+ VK D T+ +V+S+C +G+L+ G +H Y +GL
Sbjct: 183 GCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGK 242
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+LIDMY+KCG + ++ ++F+ +DVF W MI+G A++G AL L +M
Sbjct: 243 ELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQME 302
Query: 298 -DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ V +++ F+G+L+ACSH GLV++G F RM K + + ++EHYGCMVDLLGRA+L
Sbjct: 303 GEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKL 362
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L A + I+ MP P + +LL AC + + + A+ + G +++ +N
Sbjct: 363 LAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL-SN 421
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
+YA+ +W + N R M ++ K G S IEV+G H+F AG H
Sbjct: 422 VYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHF 470
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 138/296 (46%), Gaps = 13/296 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V D + +L A + +G + H + GF + Y+ ++L+ MY
Sbjct: 99 MAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGM 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
+++A +VF +MPE++++ W SM+ G+ A+ L M + D + ++S
Sbjct: 159 VEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSS 218
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++G + RY+ K++ NSLI Y+ G++ KA ++F + ++V TW
Sbjct: 219 CGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTW 278
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETG-ARIHVYA 230
M+ G+ + L +E +DLF +M+ + V P+ + VL+AC++ G +E G H +
Sbjct: 279 TVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMS 338
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ--VKDVFCWNAMILGLALHG 284
L ++D+ + + ++ E F K DV W +++ G
Sbjct: 339 KVYNLVPRIEHYGCMVDLLGRAKLLAEA-EQFIKDMPVAPDVVVWRSLLFACRASG 393
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 34/225 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV AD+ + ++ + G + + +G LH G + V+ +L+ MY
Sbjct: 200 MQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGD 259
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A+++F + ++D+ W M+ FA G A+ L M +
Sbjct: 260 VNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGE--------------- 304
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
DKV +V+ + ++ A ++ G +E+ F +M LV + + M
Sbjct: 305 ----------DKVMPNEVI-FLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCM 353
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
V R++L E +M V PD + S+L AC G +
Sbjct: 354 VDLLGRAKLLAEAEQFIKDMP---VAPDVVVWRSLLFACRASGQV 395
>gi|297729191|ref|NP_001176959.1| Os12g0490100 [Oryza sativa Japonica Group]
gi|255670316|dbj|BAH95687.1| Os12g0490100 [Oryza sativa Japonica Group]
Length = 451
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 240/461 (52%), Gaps = 33/461 (7%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGSLRCIDD 63
G + ++ ++K + + GL +H K G C V+V ALL +YG++ + D
Sbjct: 5 GPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIGLVGD 64
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A +VF D MP+K+V N M++ R G +
Sbjct: 65 ARRVF-------------------------------DEMPVKNVVVGNTMVACNVRAGDM 93
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
+AR +FD + +D +SWN+L+ Y + G+ E+F +M V+NV +WNTM+
Sbjct: 94 GAAREVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEEG 153
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
+ V +F+ M+A +PD T+ ++SACA LGSL ++H + + N H
Sbjct: 154 SLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQN 213
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
+LIDMYAKCG I Q+ +F ++ KD +N MI+ A HG+ AL L M DS ++
Sbjct: 214 SLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQP 273
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D +TF+G+LSAC+HAGLV+ G F M+ + V + +HY C+VDL GRA L++ A
Sbjct: 274 DAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCF 333
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
++ MP +P + GALL+AC H +++G+ AK + + + G ++ N A Q
Sbjct: 334 VKTMPVKPHAGVWGALLNACRKHCHVDVGEIAAKEL-IRIEPKNPGNYVLLRNTLARGQQ 392
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
W+ + M I KTAG S +EV+ H+FLAG H
Sbjct: 393 WDAVEDVQLSMRRKVIDKTAGCSWVEVDSVVHEFLAGDFYH 433
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 11/198 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D + +L+ A L S I +HG K+ + +VQ +L+ MY C
Sbjct: 165 MRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGC 224
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
I A +F + KD +++N M+ AFA G A+ L + M D +F ++S
Sbjct: 225 ISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSA 284
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
A G + + F+ + V + ++ Y AG +E+A K M VK +
Sbjct: 285 CAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAG 344
Query: 171 TWNTMVTGYLRSQLYIEV 188
W ++ R +++V
Sbjct: 345 VWGALLNA-CRKHCHVDV 361
>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 784
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 243/431 (56%), Gaps = 17/431 (3%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMY---GSLRCIDDAFKVFEKMPEKDIIAWNSMLDA 85
G H + +K ALL MY G L + F F K E W++M+
Sbjct: 360 GKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSFHKSSED----WSTMILG 415
Query: 86 FASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKD 137
+++ GQ + + + M L D+ S +IS +++G I+ R Y ++
Sbjct: 416 YSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIEN 475
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V NSL+ Y +G + +F + L ++VI+WNT+++ Y +S + E + LFD+M
Sbjct: 476 VSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVK 535
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V P+ +T VLSACA+L SL+ G +IH Y +NG SN TALIDMYAKCG +E
Sbjct: 536 EKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELET 595
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
S ++F ++ +DV WN MI +HG+ +A+++ M +S +K + TF+ LLSAC+H
Sbjct: 596 SRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNH 655
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
G V EG LF RM+K +G+ L+HY ++DLLGR+ L+ A L+ +MP P ++ G
Sbjct: 656 TGHVLEGRHLFDRMQK-YGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWG 714
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
+LLSAC IH + E+G R+A+ +S+ +DG ++ ++LY+ G+W+E + R+MM
Sbjct: 715 SLLSACKIHNEFEVGVRLARYA-IESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKR 773
Query: 438 GIVKTAGSSVI 448
G+ K AG S +
Sbjct: 774 GVEKRAGWSAL 784
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 134/314 (42%), Gaps = 9/314 (2%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L H I TG +V+ T L+ Y R + +F + KDI WNS++ + S
Sbjct: 57 LQFHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSN 116
Query: 90 GQMDHAMKLIDLM----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS-- 143
G A M L + + +++S A + + I + NS
Sbjct: 117 GDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAI 176
Query: 144 ---LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
I Y+ G +E A MF ++ VK+V+TW ++ GY+++ + EM
Sbjct: 177 GSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGG 236
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
P+Y T+ S AC +L +L G +H A NG + ++ MY++CGS E++
Sbjct: 237 TPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYR 296
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F K KD+ W ++I + G L L EM S + D+I +L ++
Sbjct: 297 CFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDR 356
Query: 321 VQEGCELFSRMEKD 334
+ EG +R+ K
Sbjct: 357 IFEGKAFHARILKQ 370
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 98/478 (20%), Positives = 201/478 (42%), Gaps = 51/478 (10%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ ++ P+++ L G+ +HG T K G F G+ + ++ + MY ++ A +
Sbjct: 137 NQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIM 196
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMK-LIDLMPLKDVTSFNIMISGYARI------ 120
F ++ KD++ W +++ + + +K L ++ + ++ + SG+
Sbjct: 197 FSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDAL 256
Query: 121 --GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
GK + + +VV ++++ Y+ G E+A F K+ K++I+W +++
Sbjct: 257 VEGKCLHGLALKNGFLCFEVVK-STILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAV 315
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+ + L E + LF EM+A + PD + ++ +L N + G H A +
Sbjct: 316 HSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALS 375
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
AL+ MY K G + + ++F+ K W+ MILG + G + L EM
Sbjct: 376 GITHNALLSMYCKFGHLGTANKIFHSFH-KSSEDWSTMILGYSNMGQKEKCISFLREMLL 434
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA---- 354
+ D + + ++S+CS G + G + K+ + + ++D+ G++
Sbjct: 435 LGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKN-SIIENVSVANSLMDMYGKSGHVT 493
Query: 355 -------RLLDR--------------------AIELIEAMPFE---PTESILGALLSACV 384
R L R AI L + M E P + +LSAC
Sbjct: 494 ATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACA 553
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCGQWEEANRWRNMMNDTGIV 440
L+ G+++ + + K N + A ++YA CG+ E + + N + ++
Sbjct: 554 HLASLDEGEKIHQYI--KENGFESNITIRTALIDMYAKCGELETSRKLFNSTEERDVI 609
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 239/452 (52%), Gaps = 47/452 (10%)
Query: 12 SFPLLLKAAGILSSSCI------------GLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
+FP LLK+ C G+ LHG+ +K G G YVQ AL+ MYG L
Sbjct: 115 AFPALLKSCARAFGLCAAADGGGEGFVSKGMELHGRVLKLGCGGDRYVQNALVSMYGKL- 173
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
G++ A K+ D MP ++ S+N +++ +
Sbjct: 174 ------------------------------GRLGDARKVFDGMPARNAVSWNALVAAHGA 203
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
G +H + ++P + V WN+ I + G+ME A +F++M ++ ++WN+++ GY
Sbjct: 204 TGDLHGVELLSREMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGY 263
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ Y++ +++F EM+ V+P LT+ SVL ACA +G LE G +H Y G+ ++
Sbjct: 264 TKLGRYVQALEVFREMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADG 323
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ AL+DMYAKCGS+E + ++F +D+ CWNAMI+G ++HGY AL+L M
Sbjct: 324 YVGNALVDMYAKCGSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAMR-- 381
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V+ D +TF+G+L ACSH GLV EG F M +D+ + ++HYGCMVD+L R +
Sbjct: 382 -VEPDHVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAE 440
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A ++I MP + + +L+AC +H +++ ++ + + + DG+++ +N+YA
Sbjct: 441 AYQMINHMPVKANCVLWKMVLAACRVHGHIDLANKAFHEL-HQLMPIDDGDVITVSNVYA 499
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
+W+ R + + G+ K A S ++
Sbjct: 500 EAKRWDVVEHLRTKVIEPGVWKHAAHSQVDAT 531
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 15/222 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ GV + +L A + +G +HG G YV AL+ MY
Sbjct: 279 MQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAKCGS 338
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD--VTSFNIMIS--- 115
++ A ++FE M +DI WN+M+ F+ G A++L D M ++ VT ++I+
Sbjct: 339 LELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAMRVEPDHVTFLGVLIACSH 398
Query: 116 -GYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWN 173
G G+++ D V + ++ G++ +A +M M VK N + W
Sbjct: 399 GGLVDEGRVYFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAEAYQMINHMPVKANCVLWK 458
Query: 174 TMVTGYLRSQLYIEVVD-LFDEMKAGNVKP----DYLTVTSV 210
MV R +I++ + F E+ + P D +TV++V
Sbjct: 459 -MVLAACRVHGHIDLANKAFHELH--QLMPIDDGDVITVSNV 497
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 160/463 (34%), Positives = 248/463 (53%), Gaps = 13/463 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G+ D LL G + G H ++ F V + AL+ MY +
Sbjct: 307 MEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQ 366
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN-------IM 113
+D A VF + ++D +W+SM+ A+ G ++L M +D F +
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISI 426
Query: 114 ISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
IS +R+G++ + Y + ++ N+LI Y G + A ++F + K+V
Sbjct: 427 ISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDV 486
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+TW+ +++ Y + + L+D+M VKP+ T+ SV+S+CANL +LE G IH +
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
D GL + TAL+DMY KCG + + ++F +DV WN MI G +HG A
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQA 606
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
LKL M VK + +TF+ +LSAC HAGLV +G ELF+RME ++ + L+HY CMVD
Sbjct: 607 LKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRME-EYSLEPNLKHYACMVD 665
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLG++ L A +++ AMP EP I G LL AC +H + E+G RVAK A S+ +DG
Sbjct: 666 LLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFA-SDPENDG 724
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
++ +N Y S +W E + R+MM + G+ K+ G S I++ G
Sbjct: 725 YYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICG 767
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 185/376 (49%), Gaps = 16/376 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G ++ + L+A G+L +G LHG +K G V ++L MY +DA
Sbjct: 210 GARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDA 269
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI------DLMPLKDVTSFNIMISGYA 118
+F ++PEKD+++W S++ A+ G + A++L L P D + +++G
Sbjct: 270 RILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP--DEVVISCLLAGLG 327
Query: 119 RIGKIHSARYIFDKVPAKD----VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
K+ + + ++ V+ N+LI Y +++ A +F+ + ++ +W++
Sbjct: 328 NDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSS 387
Query: 175 MVTGYLRSQLYIEVVDLFDEMK---AGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
MV Y ++ L ++ ++L+ EM+ + D ++ S++S+C+ LG L G H Y+
Sbjct: 388 MVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSI 447
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ N ALI MY +CG+ + + ++F + KDV W+A+I + G+ AL
Sbjct: 448 KHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALL 507
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M VK + T + ++S+C++ ++ G EL KD G+ L +VD+
Sbjct: 508 LYDQMLTEGVKPNSATLVSVISSCANLAALEHG-ELIHSHVKDVGLECDLSICTALVDMY 566
Query: 352 GRARLLDRAIELIEAM 367
+ L A ++ ++M
Sbjct: 567 MKCGQLGIARKMFDSM 582
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 156/377 (41%), Gaps = 22/377 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA------ 85
LH + +G L+ Y S A F P D WNS+L +
Sbjct: 28 LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87
Query: 86 FASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK------IHSARYIFDKVPAKDVV 139
FAS M+ P + ++ S A +G +H+ F + V
Sbjct: 88 FASTLSAHRRMRASGARPSRFTAP--LVASAAAELGALPVGAAVHAYSVRFGLLEGDGSV 145
Query: 140 S-WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE----VVDLFDE 194
+ +SL+ Y G + A +F +M ++V+ W +++G + + E +V +
Sbjct: 146 AVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRS 205
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
G +P+ T+ S L AC LG L G +H + G+ P ++L MY KC S
Sbjct: 206 AGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDS 265
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
E + +F + KD+ W ++I G+ A++L M +S ++ D++ LL+
Sbjct: 266 TEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG 325
Query: 315 CSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
+ V+ G + + ++FG + + + ++ + + + +D A + + T+
Sbjct: 326 LGNDAKVRGGKTFHAAIVRRNFGDSVLIGN--ALISMYAKCKQVDIAATVFRMLHQRDTD 383
Query: 374 SILGALLSACVIHQDLE 390
S +++ C DL+
Sbjct: 384 SWSSMVVAYCKAGLDLK 400
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/526 (29%), Positives = 260/526 (49%), Gaps = 63/526 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ GV +F + ++ LS+ +G LHG +KT F V + TA L MY
Sbjct: 266 MQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNN 325
Query: 61 IDDAFKVFEKMPEKDIIAWNSML------------------DAFASCGQMDHAMKLIDL- 101
+ DA K+F +P ++ ++N+++ AF +C + ++ + +
Sbjct: 326 LSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVH 385
Query: 102 -MPLKDVTSFNIMISG-----YARIGKIHSARYIFDKVPAKDVVSWNSLILA-------- 147
+ +K + NI ++ Y + G + A +F+++ ++D VSWN++I A
Sbjct: 386 GLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEE 445
Query: 148 -----------------------------YTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
Y+ G MEKA ++ ++ + V++WN +++G
Sbjct: 446 KTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG 505
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+ + E F +M V PD T ++L CANL ++E G +IH L S+
Sbjct: 506 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 565
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+ ++ L+DMY+KCG+++ +F K+ +D WNAM+ G A HG G ALK+ M
Sbjct: 566 AYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQL 625
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358
VK + TF+ +L AC H GLV++G F M ++G+ +LEHY C+VD++GR+ +
Sbjct: 626 ENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVS 685
Query: 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418
+A+ELIE MPFE I LLS C IH ++E+ ++ A + S ++ +N+Y
Sbjct: 686 KALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDS-AAYVLLSNIY 744
Query: 419 ASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
A+ G W E + R MM G+ K G S IE+ H FL G H
Sbjct: 745 ANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAH 790
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 182/397 (45%), Gaps = 35/397 (8%)
Query: 90 GQMDHA-MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
G+ HA M L + P VT N +I Y + + A +FD +P +D VSWN+++ Y
Sbjct: 61 GKQAHARMILTEFKPTVFVT--NCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGY 118
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G++ A ++F M ++V++WN++++GYL + + +V+D+F +M D T
Sbjct: 119 AGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFA 178
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
VL +C++L G +IH A G + +AL+DMYAKC ++ S++ F+ K
Sbjct: 179 VVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK 238
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+ W+A+I G + L+L EM + V TF + +C+ ++ G +L
Sbjct: 239 NWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLH 298
Query: 329 SR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE-------------- 373
++ DFG + +D+ + L A +L ++P +
Sbjct: 299 GHALKTDFGTDVVIG--TATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDK 356
Query: 374 -------SILGALLSACVIHQDLE---IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
S+ GA + VI DLE + K +C + +++ L ++Y CG
Sbjct: 357 GLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAIL----DMYGKCGA 412
Query: 424 WEEANR-WRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
EA + M++ + A + E NG+ K L+
Sbjct: 413 LVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLS 449
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 100/447 (22%), Positives = 190/447 (42%), Gaps = 48/447 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M +G D +F ++LK+ L G+ +HG +K GF V +ALL MY +
Sbjct: 165 MGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKK 224
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-- 118
+D + + F MPEK+ ++W++++ A C Q D ++L + S +A
Sbjct: 225 LDCSIQFFHSMPEKNWVSWSAII---AGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASV 281
Query: 119 ----------RIGKI---HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
R+G H+ + F DVV + + Y + A ++F +
Sbjct: 282 FRSCAGLSALRLGSQLHGHALKTDF----GTDVVIGTATLDMYMKCNNLSDAQKLFNSLP 337
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL-GSLETGA 224
N+ ++N ++ GY RS + + D ++++ ACA + G LE G
Sbjct: 338 NHNLQSYNAIIVGYARSDKGLGL--------------DEVSLSGAFRACAVIKGDLE-GL 382
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
++H + + SN A++DMY KCG++ ++ VF + +D WNA+I +G
Sbjct: 383 QVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNG 442
Query: 285 YGYAALKLLGEMNDSCVKA----DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340
L L +++ +K+ D I L+ S G++++ +L R+ + V+
Sbjct: 443 NEEKTLSLF--IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWN 500
Query: 341 LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVC 400
G L ++ + + M +P +L C +E+G ++ +
Sbjct: 501 AIISG--FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQI- 557
Query: 401 AKSNYLSDGEL-MMFANLYASCGQWEE 426
K SD + ++Y+ CG ++
Sbjct: 558 IKKELQSDAYISSTLVDMYSKCGNMQD 584
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 42/251 (16%)
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T + + C++ +L G + H T LI MY KC +E + +VF
Sbjct: 44 TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+D WNAM+ G A G A KL D+ + D +++ L+S H G ++
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLF----DAMPERDVVSWNSLISGYLHNGDHRKVI 159
Query: 326 ELFSRMEK--------DFGVTRK----LEHYG----------------------CMVDLL 351
++F +M + F V K LE +G ++D+
Sbjct: 160 DVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMY 219
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
+ + LD +I+ +MP E A+++ CV + DL G + K + +S
Sbjct: 220 AKCKKLDCSIQFFHSMP-EKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQS-- 276
Query: 412 MMFANLYASCG 422
FA+++ SC
Sbjct: 277 -TFASVFRSCA 286
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 254/473 (53%), Gaps = 11/473 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ++G+ + SF +L + G +H Q + G + V T+L++MY +
Sbjct: 250 MQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGS 309
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
I+ A +VF+ M +D+++W M++ +A G ++ A L M + D ++ +++
Sbjct: 310 IEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNA 369
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A ++ AR I +V D++ +L+ Y G ++ A ++F M ++V++W
Sbjct: 370 CAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSW 429
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+ M+ Y+ + E + F MK N++PD +T ++L+AC +LG+L+ G I+ A
Sbjct: 430 SAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIK 489
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L S+ ALI M AK GS+E++ +F +DV WNAMI G +LHG AL L
Sbjct: 490 ADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYL 549
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M + + +TF+G+LSACS AG V EG F+ + + G+ ++ YGCMVDLLG
Sbjct: 550 FDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLG 609
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL- 411
RA LD A LI++MP +PT SI +LL AC IH +L++ +R A+ Y DG +
Sbjct: 610 RAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPY--DGAVY 667
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +++YA+ G WE + R +M GI K G + IEV G H F+ H
Sbjct: 668 VQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSH 720
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 166/343 (48%), Gaps = 12/343 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ +F +L A + G +H Q + GF + TAL+ MY
Sbjct: 149 MVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGS 208
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA------MKLIDLMPLKDVTSFNIMI 114
+DDA +VF+ + +D+ +N M+ +A G + A M+ + L P K SF ++
Sbjct: 209 MDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNK--ISFLSIL 266
Query: 115 SGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G + + + + D+ SLI YT G +E A +F M V++V+
Sbjct: 267 DGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVV 326
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W M+ GY + + LF M+ ++PD +T +++ACA +L IH
Sbjct: 327 SWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV 386
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G ++ +TAL+ MYAKCG+I+ + +VF +DV W+AMI +GYG A
Sbjct: 387 DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAF 446
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+ M S ++ D +T+I LL+AC H G + G E++++ K
Sbjct: 447 ETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIK 489
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/433 (24%), Positives = 202/433 (46%), Gaps = 21/433 (4%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E G H D+ ++ L + L + +G + I+ G ++Y L+K+Y +
Sbjct: 50 EGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVT 109
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISGYA 118
+A ++F+ + K ++ WN+++ +A G + A +++D + +F ++ +
Sbjct: 110 EARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACS 169
Query: 119 RIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
++ + + +V VS +L+ Y G M+ A ++F + +++V T+N
Sbjct: 170 SPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNV 229
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
MV GY +S + + +LF M+ +KP+ ++ S+L C +L G +H + G
Sbjct: 230 MVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAG 289
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L + T+LI MY CGSIE + VF +V+DV W MI G A +G A L
Sbjct: 290 LVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFA 349
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME-KDFGVTRKLEHYGCMVDLLGR 353
M + ++ D IT++ +++AC+ + + E+ S+++ FG L +V + +
Sbjct: 350 TMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGT--DLLVSTALVHMYAK 407
Query: 354 ARLLDRAIELIEAMPFEPTES---ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
+ A ++ +AMP S ++GA + + E + +SN DG
Sbjct: 408 CGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFE-----TFHLMKRSNIEPDG- 461
Query: 411 LMMFANLYASCGQ 423
+ + NL +CG
Sbjct: 462 -VTYINLLNACGH 473
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 105/274 (38%), Gaps = 35/274 (12%)
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
D+ + G D T + C L G ++ + G N + LI +Y
Sbjct: 43 DVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLY 102
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
+ CG++ ++ ++F + K V WNA+I G A G+ A L +M D ++ ITF+
Sbjct: 103 SICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFL 162
Query: 310 GLLSACSHAGLVQEGCELFSRM-----EKDFGV-------------------------TR 339
+L ACS + G E+ +++ DF + R
Sbjct: 163 SVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIR 222
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVA 396
+ + MV ++ ++A EL M +P + ++L C + L G V
Sbjct: 223 DVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVH 282
Query: 397 KMVCAKSNYLSDGELMM-FANLYASCGQWEEANR 429
C + + D + +Y +CG E A R
Sbjct: 283 AQ-CMNAGLVDDIRVATSLIRMYTTCGSIEGARR 315
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 160/463 (34%), Positives = 248/463 (53%), Gaps = 13/463 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G+ D LL G + G H ++ F V + AL+ MY +
Sbjct: 307 MEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQ 366
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN-------IM 113
+D A VF + ++D +W+SM+ A+ G ++L M +D F +
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISI 426
Query: 114 ISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
IS +R+G++ + Y + ++ N+LI Y G + A ++F + K+V
Sbjct: 427 ISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDV 486
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+TW+ +++ Y + + L+D+M VKP+ T+ SV+S+CANL +LE G IH +
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
D GL + TAL+DMY KCG + + ++F +DV WN MI G +HG A
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQA 606
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
LKL M VK + +TF+ +LSAC HAGLV +G ELF+RME ++ + L+HY CMVD
Sbjct: 607 LKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRME-EYSLEPNLKHYACMVD 665
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLG++ L A +++ AMP EP I G LL AC +H + E+G RVAK A S+ +DG
Sbjct: 666 LLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFA-SDPENDG 724
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
++ +N Y S +W E + R+MM + G+ K+ G S I++ G
Sbjct: 725 YYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICG 767
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 185/376 (49%), Gaps = 16/376 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G ++ + L+A G+L +G LHG +K G V ++L MY +DA
Sbjct: 210 GARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDA 269
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI------DLMPLKDVTSFNIMISGYA 118
+F ++PEKD+++W S++ A+ G + A++L L P D + +++G
Sbjct: 270 RILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP--DEVVISCLLAGLG 327
Query: 119 RIGKIHSARYIFDKVPAKD----VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
K+ + + ++ V+ N+LI Y +++ A +F+ + ++ +W++
Sbjct: 328 NDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSS 387
Query: 175 MVTGYLRSQLYIEVVDLFDEMK---AGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
MV Y ++ L ++ ++L+ EM+ + D ++ S++S+C+ LG L G H Y+
Sbjct: 388 MVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSI 447
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ N ALI MY +CG+ + + ++F + KDV W+A+I + G+ AL
Sbjct: 448 KHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALL 507
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M VK + T + ++S+C++ ++ G EL KD G+ L +VD+
Sbjct: 508 LYDQMLTEGVKPNSATLVSVISSCANLAALEHG-ELIHSHVKDVGLECDLSICTALVDMY 566
Query: 352 GRARLLDRAIELIEAM 367
+ L A ++ ++M
Sbjct: 567 MKCGQLGIARKMFDSM 582
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 156/377 (41%), Gaps = 22/377 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA------ 85
LH + +G L+ Y S A F P D WNS+L +
Sbjct: 28 LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87
Query: 86 FASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK------IHSARYIFDKVPAKDVV 139
FAS M+ P + ++ S A +G +H+ F + V
Sbjct: 88 FASTLSAHRRMRASGARPSRFTAP--LVASAAAELGALPVGAAVHAYSVRFGLLEGDGSV 145
Query: 140 S-WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE----VVDLFDE 194
+ +SL+ Y G + A +F +M ++V+ W +++G + + E +V +
Sbjct: 146 AVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRS 205
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
G +P+ T+ S L AC LG L G +H + G+ P ++L MY KC S
Sbjct: 206 AGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDS 265
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
E + +F + KD+ W ++I G+ A++L M +S ++ D++ LL+
Sbjct: 266 TEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG 325
Query: 315 CSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
+ V+ G + + ++FG + + + ++ + + + +D A + + T+
Sbjct: 326 LGNDAKVRGGKTFHAAIVRRNFGDSVLIGN--ALISMYAKCKQVDIAATVFRMLHQRDTD 383
Query: 374 SILGALLSACVIHQDLE 390
S +++ C DL+
Sbjct: 384 SWSSMVVAYCKAGLDLK 400
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 255/478 (53%), Gaps = 17/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D +++ +L A L +G LH + I+ G V V +L+ MY +C
Sbjct: 222 MELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYA--KC 279
Query: 61 -----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-----KLIDLMPLKDVTSF 110
+DD+ KVFE+MPE ++++W +++ A+ G+ D K+I + SF
Sbjct: 280 AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSF 339
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLV 166
+ ++ + ++ ++ + S NSLI Y +G ME A + F +
Sbjct: 340 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE 399
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
KN++++N +V GY ++ E LF+E+ + T S+LS A++G++ G +I
Sbjct: 400 KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 459
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H G SN ALI MY++CG+IE + +VF + + ++V W +MI G A HG+
Sbjct: 460 HGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFA 519
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL++ +M ++ K ++IT++ +LSACSH G++ EG + F+ M K+ G+ ++EHY C
Sbjct: 520 TRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYAC 579
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
MVDLLGR+ LL A+E I +MP + LL AC +H + E+G A+M+ +
Sbjct: 580 MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD- 638
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +NL+AS GQW++ + R M + ++K AG S IEV H+F G H
Sbjct: 639 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSH 696
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 15/344 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + D ++ +LLK+ + +G ++H + +++G V L+ +Y
Sbjct: 17 MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76
Query: 61 IDDAFKVFEKMPEK-DIIAWNSMLDAFASCGQMDHAM-KLIDLMPL---KDVTSFNIMI- 114
+ A +FE M K D+++W++M+ FA+ A+ +D++ L + F +I
Sbjct: 77 TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 136
Query: 115 ----SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN-AGEMEKAGEMFKKMLVKNV 169
+ YA +G+I + DV LI + +G++ A ++F KM +N+
Sbjct: 137 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 196
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+TW M+T + + + +DLF +M+ PD T +SVLSAC LG L G ++H
Sbjct: 197 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 256
Query: 230 ATDNGLASNPHATTALIDMYAKC---GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY- 285
GLA + +L+DMYAKC GS++ S +VF + +V W A+I G
Sbjct: 257 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC 316
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
A++L +M ++ + +F +L AC + G +++S
Sbjct: 317 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 360
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
D M N PD T + +L +C + + G +H +GL + LI +Y+K
Sbjct: 14 LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK 73
Query: 252 CGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
CG E + +F +D+ W+AM+ A + + A+ +M + ++ F
Sbjct: 74 CGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAA 133
Query: 311 LLSACSHA 318
++ ACS+A
Sbjct: 134 VIRACSNA 141
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 160/463 (34%), Positives = 248/463 (53%), Gaps = 13/463 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G+ D LL G + G H ++ F V + AL+ MY +
Sbjct: 307 MEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQ 366
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN-------IM 113
+D A VF + ++D +W+SM+ A+ G ++L M +D F +
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISI 426
Query: 114 ISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
IS +R+G++ + Y + ++ N+LI Y G + A ++F + K+V
Sbjct: 427 ISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDV 486
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+TW+ +++ Y + + L+D+M VKP+ T+ SV+S+CANL +LE G IH +
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
D GL + TAL+DMY KCG + + ++F +DV WN MI G +HG A
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQA 606
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
LKL M VK + +TF+ +LSAC HAGLV +G ELF+RME ++ + L+HY CMVD
Sbjct: 607 LKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRME-EYSLEPNLKHYACMVD 665
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLG++ L A +++ AMP EP I G LL AC +H + E+G RVAK A S+ +DG
Sbjct: 666 LLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFA-SDPENDG 724
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
++ +N Y S +W E + R+MM + G+ K+ G S I++ G
Sbjct: 725 YYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICG 767
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 185/376 (49%), Gaps = 16/376 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G ++ + L+A G+L +G LHG +K G V ++L MY +DA
Sbjct: 210 GARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDA 269
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI------DLMPLKDVTSFNIMISGYA 118
+F ++PEKD+++W S++ A+ G + A++L L P D + +++G
Sbjct: 270 RILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP--DEVVISCLLAGLG 327
Query: 119 RIGKIHSARYIFDKVPAKD----VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
K+ + + ++ V+ N+LI Y +++ A +F+ + ++ +W++
Sbjct: 328 NDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSS 387
Query: 175 MVTGYLRSQLYIEVVDLFDEMK---AGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
MV Y ++ L ++ ++L+ EM+ + D ++ S++S+C+ LG L G H Y+
Sbjct: 388 MVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSI 447
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ N ALI MY +CG+ + + ++F + KDV W+A+I + G+ AL
Sbjct: 448 KHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALL 507
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L +M VK + T + ++S+C++ ++ G EL KD G+ L +VD+
Sbjct: 508 LYDQMLTEGVKPNSATLVSVISSCANLAALEHG-ELIHSHVKDVGLECDLSICTALVDMY 566
Query: 352 GRARLLDRAIELIEAM 367
+ L A ++ ++M
Sbjct: 567 MKCGQLGIARKMFDSM 582
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 156/377 (41%), Gaps = 22/377 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA------ 85
LH + +G L+ Y S A F P D WNS+L +
Sbjct: 28 LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87
Query: 86 FASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK------IHSARYIFDKVPAKDVV 139
FAS M+ P + ++ S A +G +H+ F + V
Sbjct: 88 FASTLSAHRRMRASGARPSRFTAP--LVASAAAELGALPVGAAVHAYSVRFGLLEGDGSV 145
Query: 140 S-WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE----VVDLFDE 194
+ +SL+ Y G + A +F +M ++V+ W +++G + + E +V +
Sbjct: 146 AVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRS 205
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
G +P+ T+ S L AC LG L G +H + G+ P ++L MY KC S
Sbjct: 206 AGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDS 265
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
E + +F + KD+ W ++I G+ A++L M +S ++ D++ LL+
Sbjct: 266 TEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG 325
Query: 315 CSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTE 373
+ V+ G + + ++FG + + + ++ + + + +D A + + T+
Sbjct: 326 LGNDAKVRGGKTFHAAIVRRNFGDSVLIGN--ALISMYAKCKQVDIAATVFRMLHQRDTD 383
Query: 374 SILGALLSACVIHQDLE 390
S +++ C DL+
Sbjct: 384 SWSSMVVAYCKAGLDLK 400
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 255/478 (53%), Gaps = 17/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D +++ +L A L +G LH + I+ G V V +L+ MY +C
Sbjct: 240 MELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYA--KC 297
Query: 61 -----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-----KLIDLMPLKDVTSF 110
+DD+ KVFE+MPE ++++W +++ A+ G+ D K+I + SF
Sbjct: 298 AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSF 357
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLV 166
+ ++ + ++ ++ + S NSLI Y +G ME A + F +
Sbjct: 358 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFE 417
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
KN++++N +V GY ++ E LF+E+ + T S+LS A++G++ G +I
Sbjct: 418 KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 477
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H G SN ALI MY++CG+IE + +VF + + ++V W +MI G A HG+
Sbjct: 478 HGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFA 537
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL++ +M ++ K ++IT++ +LSACSH G++ EG + F+ M K+ G+ ++EHY C
Sbjct: 538 TRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYAC 597
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
MVDLLGR+ LL A+E I +MP + LL AC +H + E+G A+M+ +
Sbjct: 598 MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD- 656
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +NL+AS GQW++ + R M + ++K AG S IEV H+F G H
Sbjct: 657 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSH 714
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 15/344 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + D ++ +LLK+ + +G ++H + +++G V L+ +Y
Sbjct: 35 MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94
Query: 61 IDDAFKVFEKMPEK-DIIAWNSMLDAFASCGQMDHAM-KLIDLMPL---KDVTSFNIMI- 114
+ A +FE M K D+++W++M+ FA+ A+ +D++ L + F +I
Sbjct: 95 TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 154
Query: 115 ----SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN-AGEMEKAGEMFKKMLVKNV 169
+ YA +G+I + DV LI + +G++ A ++F KM +N+
Sbjct: 155 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 214
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+TW M+T + + + +DLF +M+ PD T +SVLSAC LG L G ++H
Sbjct: 215 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 274
Query: 230 ATDNGLASNPHATTALIDMYAKC---GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY- 285
GLA + +L+DMYAKC GS++ S +VF + +V W A+I G
Sbjct: 275 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC 334
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
A++L +M ++ + +F +L AC + G +++S
Sbjct: 335 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 378
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
D M N PD T + +L +C + + G +H +GL + LI +Y+K
Sbjct: 32 LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK 91
Query: 252 CGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
CG E + +F +D+ W+AM+ A + + A+ +M + ++ F
Sbjct: 92 CGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAA 151
Query: 311 LLSACSHA 318
++ ACS+A
Sbjct: 152 VIRACSNA 159
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 162/501 (32%), Positives = 253/501 (50%), Gaps = 52/501 (10%)
Query: 15 LLLKAAGILSSSCIGLM-----------LHGQTIKTGF-CGHVYVQTALLKMYGSLRCID 62
L L+ G+ S C L+ +H Q + G + + + Y
Sbjct: 11 LALRRGGMNRSVCHHLLTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPA 70
Query: 63 DAFKVFEKMPEKDIIAWNSML--------------------------DAFASCGQMDHAM 96
DA ++F+++P DII++ S++ D FA+ G + +
Sbjct: 71 DAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASG 130
Query: 97 KLIDLMPLKDVTSF-------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
L D V N ++ Y R GK AR +FD++ KD V+W S
Sbjct: 131 GLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGS 190
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
++ Y ++ A F +M +K+ ++W ++TG+++ + I+ ++LF +M +P+
Sbjct: 191 MLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPN 250
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
++T+ VLSACA++G+L+ G IH Y + + +N T AL+DMYAK GSI + VF
Sbjct: 251 HITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFE 310
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ Q+KD F W MI + G G A++L +M S + + +TF+ +LSACSHAGL+QE
Sbjct: 311 EVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQE 370
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G ELF +M + + + +LEHYGCMVDLLGR LL+ A LI+ M EP I +LLSAC
Sbjct: 371 GRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSAC 430
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
+ H + + + K + K DG ++ N+YA +W+EA R M I K
Sbjct: 431 LAHGNDRLAEIAGKEII-KREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKP 489
Query: 444 GSSVIEVNGSYHKFLAGGIGH 464
G S IEV+G H+FL H
Sbjct: 490 GCSWIEVDGVVHEFLVEDKSH 510
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 49/325 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D ++ L A+G L IG ++HG + G + V AL+ MY + A
Sbjct: 114 GHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPA 173
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF++M KD + W SML + C +D A+ MP+K S+ +I+G+ + +
Sbjct: 174 RTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPI 233
Query: 125 SARYIFDKV---------------------------------------PAKDVVSWNSLI 145
A +F K+ +++ N+L+
Sbjct: 234 QALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALM 293
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y +G + A +F+++ +K+ TW TM++ + + V+LF +M + P+ +
Sbjct: 294 DMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSV 353
Query: 206 TVTSVLSACANLGSLETGARI-----HVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
T SVLSAC++ G ++ G + VY D L ++D+ + G +E++
Sbjct: 354 TFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEH----YGCMVDLLGRGGLLEEAEA 409
Query: 261 VFYKSQVK-DVFCWNAMILGLALHG 284
+ V+ D+ W +++ HG
Sbjct: 410 LIDHMDVEPDIVIWRSLLSACLAHG 434
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 213/348 (61%), Gaps = 1/348 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I+ + ++ AR +F+++ +DV SW SL+ Y GEM++A E+F M V+N +
Sbjct: 217 NSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDV 276
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVY 229
+W M++G+L Y E + F M + V P+ + VLSACA+LG+L+ G IH+Y
Sbjct: 277 SWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLY 336
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
G+ + + +TALIDMYAKCG I+ + VF +DV + +MI GL+ HG G A
Sbjct: 337 IDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDA 396
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L++ +M D V ++IT +G+L+ CSH+GLV+EG + + ME +G+ K+EHYGC +D
Sbjct: 397 LRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYID 456
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA L+RA+E+++ MP EP I ALLSA IH ++ +G+++ + + +G
Sbjct: 457 LLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNG 516
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKF 457
++ +NLYAS G+WE R +M D + G S IEVNG H+F
Sbjct: 517 GEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEF 564
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 161/341 (47%), Gaps = 45/341 (13%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
+ V D Y+F ++ + S G ++HG +K+GF ++YV +++ M ++D
Sbjct: 172 MQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMED 231
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A KVF +M E+D+ +W S+L +A G+MD A +L ++MP+++ S+ +MISG+ G+
Sbjct: 232 ARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRY 291
Query: 124 HSARYIF------DKVPAKDVV-----------------SW-----------------NS 143
A F D+V + V +W +
Sbjct: 292 PEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTA 351
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y G ++ A +F + ++V+++ +M++G L + + +F +M NV P+
Sbjct: 352 LIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPN 411
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEVF 262
+T+ VL+ C++ G +E G+ I G+A ID+ + G +E++LEV
Sbjct: 412 EITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVV 471
Query: 263 YKSQVK-DVFCWNAMILGLALH---GYGYAALKLLGEMNDS 299
++ D+ W A++ +H G + +G++ S
Sbjct: 472 KTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSS 512
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 111/266 (41%), Gaps = 48/266 (18%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEM----KAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
WN M+ Y + + E + LF M V PD T T V+++C++ SL G +H
Sbjct: 142 WNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVH 201
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+G SN + ++I+M + +E + +VF + +DVF W +++ G A HG
Sbjct: 202 GMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMD 261
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
A +L M +D+++ ++S G E F M D
Sbjct: 262 RACELFNMMP----VRNDVSWAVMISGFLGCGRYPEALTFFCNMLCD------------- 304
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD----RVAKMVCAKS 403
DR P E++L +LSAC L+ G+ + K+ +S
Sbjct: 305 ----------DRV---------NPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQS 345
Query: 404 NYLSDGELMMFANLYASCGQWEEANR 429
+ +S ++YA CG+ + A+R
Sbjct: 346 SNISTA----LIDMYAKCGRIDCASR 367
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 244/459 (53%), Gaps = 20/459 (4%)
Query: 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIA 78
A+G+LS +HG +K GF V +L++MY SL + DA K+F +M KD ++
Sbjct: 307 ASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMS 366
Query: 79 WNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS---------GYARIG-KIHSARY 128
W +M+ + G D A+++ LM L +V+ ++ I+ G +G K+H
Sbjct: 367 WTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQ 426
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+K + VV N+L+ Y + ++KA E+FK M K+V++W++M+ G+ + E
Sbjct: 427 --NKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEA 484
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ F M G+VKP+ +T + LSACA G+L +G IH Y G+ S + AL+D+
Sbjct: 485 LYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDL 543
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
Y KCG + F KDV WN M+ G HG G AL L +M + D++TF
Sbjct: 544 YVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTF 603
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ LL ACS AG+V +G ELF M + F + L+HY CMVDLL R L A LI MP
Sbjct: 604 VALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMP 663
Query: 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL---MMFANLYASCGQWE 425
+P ++ GALL+ C IH+ +E+G+ AK++ L ++ ++ +LY G+W
Sbjct: 664 IKPDAAVWGALLNGCRIHRHVELGELAAKVILE----LEPNDVAYHVLLCDLYTDAGKWA 719
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R R M + G+ + G S +EV G H FL H
Sbjct: 720 QVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESH 758
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 172/333 (51%), Gaps = 13/333 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D Y+FP +L+ G + +G +H ++ GF V V AL+ MY I A
Sbjct: 192 GMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSFNIMI 114
KVF+ M D I+WN+M+ + + ++L +LM + VT + M+
Sbjct: 252 RKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGML 311
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
S ++H + + A DV NSLI YT+ G M AG++F +M K+ ++W
Sbjct: 312 SEVGFAKEMHG--FAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTA 369
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M++GY ++ + ++++ M+ NV PD +T+ S L+ACA LG L+ G ++H A + G
Sbjct: 370 MISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKG 429
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
AL++MYAK I++++EVF KDV W++MI G + + AL
Sbjct: 430 FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFR 489
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
M VK + +TFI LSAC+ G ++ G E+
Sbjct: 490 YMLGH-VKPNSVTFIAALSACAATGALRSGKEI 521
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 171/355 (48%), Gaps = 19/355 (5%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL---- 104
A+L M I A++VF KMPE+D+ +WN M+ + G ++ A+ L M
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194
Query: 105 KDVTSFNIMISGYA-----RIGK---IHSARYIF-DKVPAKDVVSWNSLILAYTNAGEME 155
DV +F ++ R+G+ H R+ F D+V DV+ N+L+ Y G++
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEV---DVL--NALVTMYAKCGDIV 249
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
A ++F M V + I+WN M+ G+ + ++LF M V+P+ +T+TSV A
Sbjct: 250 AARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASG 309
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
L + +H +A G A + +LI MY G + + ++F + + KD W A
Sbjct: 310 MLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTA 369
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
MI G +G+ AL++ M V DD+T L+AC+ G + G +L + ++
Sbjct: 370 MISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKL-HELAQNK 428
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390
G R + ++++ +++ +D+AIE+ + M + S + C H+ E
Sbjct: 429 GFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFE 483
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 160/464 (34%), Positives = 245/464 (52%), Gaps = 14/464 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ D+ LL G + G H +K F +V V AL+ MYG
Sbjct: 311 MMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFEL 370
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF----NIMISG 116
+D+A +VF + ++D +WN M+ + G ++L M +D F N ++S
Sbjct: 371 VDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSA 430
Query: 117 YARIGKIHSAR-------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-N 168
+ ++ R Y +D N LI Y G+ + A ++F +K +
Sbjct: 431 ISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGD 490
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+TWNT+++ Y V L+D+M + P+ T+ +V+SACANL +LE G +IH
Sbjct: 491 VVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHS 550
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y + G + TALIDMYAKCG + + +F DV WN MI G +HG
Sbjct: 551 YVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQ 610
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL+L G+M +K + +TF+ +LSAC H+GL++EG +LF+RM K + + L+HY CMV
Sbjct: 611 ALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGK-YSLEPNLKHYACMV 669
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DLLG++ L A +++ AMP EP I G LLSAC +H D E+G R+AK A S+ ++
Sbjct: 670 DLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAFA-SDAENE 728
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
G ++ +N Y S +W+E + R M + G+ K AG S ++ G
Sbjct: 729 GYYILISNSYGSAKKWDEIEKLREAMKNHGVQKGAGWSAVDYCG 772
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 109/458 (23%), Positives = 191/458 (41%), Gaps = 59/458 (12%)
Query: 28 IGLMLHGQTIKTGFC----GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSML 83
+G +H ++ G G V V ++L+ MY + DA K+FE+M E+D++AW +++
Sbjct: 128 VGASVHAYCVRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVV 187
Query: 84 DAFASCGQMDHAMK-LIDLMPL----KDVTSFNIMISGYARIG---KIHSARYIFD---K 132
G+ ++ L++++ L K + M SG G +++S R + K
Sbjct: 188 SGCVRNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVK 247
Query: 133 VPAKD---VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
V D V+S +L Y+ E A +F ++ K+V++W +++ Y L E +
Sbjct: 248 VGVGDSPMVIS--ALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAM 305
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
+LF EM ++PD + V+ +LS N G++ G H N ALI MY
Sbjct: 306 ELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMY 365
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM---NDSCVKADDI 306
K ++ + VF +D WN MI+G G L+L EM + D
Sbjct: 366 GKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDAN 425
Query: 307 TFIGLLSACSHAGLVQEG----------------------------CELFSRMEKDFGVT 338
+ + +S+CS ++ G C F K FG+
Sbjct: 426 SLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLA 485
Query: 339 R---KLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIG 392
+ + + ++ + A+ L + M E P + L ++SAC LE G
Sbjct: 486 KLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERG 545
Query: 393 DRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANR 429
+++ V + + D + ++YA CGQ A R
Sbjct: 546 EKIHSYV-KEMGWDYDVSINTALIDMYAKCGQLGTARR 582
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 150/351 (42%), Gaps = 25/351 (7%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +H + +G + L+ Y S A F P D WNS++
Sbjct: 29 LRVHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCA 88
Query: 90 GQMDHAMKLIDLM------------PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKD 137
A+ M PL + + G + RY V
Sbjct: 89 SDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGGS 148
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS-------QLYIEVVD 190
V +SL+ Y G + A ++F++M ++V+ W +V+G +R+ + +E+V
Sbjct: 149 VAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVR 208
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
L + KA +P+ T+ S L AC L L +G +H YA G+ +P +AL MY+
Sbjct: 209 LAGDGKA---RPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYS 265
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
KC S E + +F + KDV W ++I G A++L EM +S ++ DD+
Sbjct: 266 KCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSC 325
Query: 311 LLSACSHAGLVQEGCELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
LLS ++G V G + M+++FG + + ++ + G+ L+D A
Sbjct: 326 LLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGN--ALISMYGKFELVDNA 374
>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
Length = 677
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 258/465 (55%), Gaps = 12/465 (2%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
++ +F L L A L + + G+ V+V +ALL +Y +++A +VF
Sbjct: 106 NSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVF 165
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI---------MISGYAR 119
+ MP KD +AW++M+ F + G+ A+ + M V+ + M +G AR
Sbjct: 166 DGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNAR 225
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
IG R + DVV+ SL+ Y G ++ A ++F+ M +N +TW+ +++G+
Sbjct: 226 IGASVHGR-LLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGF 284
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ +E +DLF E++A ++P + S L ACA++G L+ G IH + L
Sbjct: 285 AQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR-LEWQC 343
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TA++DMY+KCGS+E + ++F K +D+ WNA+I HG G+ AL L E+N++
Sbjct: 344 ILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNET 403
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+K D TF LLSA SH+GLV+EG F RM K+FG+ +HY C+VDLL R+ L++
Sbjct: 404 GIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEE 463
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A +++ +M EPT +I LLS C+ ++ LE+G+ +AK + + G L + +NLYA
Sbjct: 464 ANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKIL-ELRPEDIGVLALVSNLYA 522
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +W++ R +M D+G K G S+IEV G+ H F+ H
Sbjct: 523 AAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSH 567
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 12/204 (5%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN +++ + R+ + +F + + + +P+ T T L+ACA LG L+ + V A
Sbjct: 76 WNGLLSAHSRAGAPGAALRVFRALPS-SARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G + +AL+ +Y++CG++E+++ VF KD W+ M+ G G AL
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR-----MEKDFGVTRKLEHYGC 346
+ M + V D++ +G++ AC G + G + R M D T L
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSL----- 249
Query: 347 MVDLLGRARLLDRAIELIEAMPFE 370
V + + LD A ++ MP+
Sbjct: 250 -VSMYAKNGHLDVACQVFRMMPYR 272
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 138/291 (47%), Gaps = 15/291 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E GV D +++A ++ IG +HG+ ++ V T+L+ MY
Sbjct: 199 MREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGH 258
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN-IMIS---- 115
+D A +VF MP ++ + W++++ FA G+ A+ L + + + ++S
Sbjct: 259 LDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLA 318
Query: 116 ----GYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G+ ++GK IH +I ++ + ++ +++ Y+ G +E A ++F K+ ++++
Sbjct: 319 CASVGFLKLGKSIHG--FILRRLEWQCILG-TAVLDMYSKCGSLESARKLFNKLSSRDLV 375
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA-RIHVY 229
WN ++ + + LF E+ +KPD+ T S+LSA ++ G +E G
Sbjct: 376 LWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRM 435
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC-WNAMILG 279
+ G+ ++D+ A+ G +E++ ++ Q + W ++ G
Sbjct: 436 IKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSG 486
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 213/350 (60%), Gaps = 2/350 (0%)
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y++ G++ AR +FD + K+ V+WN++I Y +G++ A ++F KM ++I+W MV
Sbjct: 94 YSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMV 153
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G+++ + E + F EM+ VKPDY+ + + L+AC NLG+L G +H Y
Sbjct: 154 NGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFK 213
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+N + +LID+Y +CG +E + EVF K + + V WN++I+G A +G + +L +M
Sbjct: 214 NNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 273
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ K + +TF G L+ACSH GLV EG F M++D+ ++ ++EHYGC+VDL RA
Sbjct: 274 QEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGR 333
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIH-QDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L+ A++++++MP +P E ++G+LL+AC H + + +R+ K + + N S ++ +
Sbjct: 334 LEDALKVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLMKHL-SDLNVKSHSNYVILS 392
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
N+YA+ +WE A+R R M G+ K G S IE++ H F+AG H+
Sbjct: 393 NMYAADAKWEGASRMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHV 442
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 173/389 (44%), Gaps = 55/389 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSS--SCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGS 57
M+ GV + +F LL G S +G +LHG K G HV V TA+L MY
Sbjct: 37 MRLAGVEPTHITFIALLSGCGDFPSGSETLGDLLHGYACKLGLDRNHVMVGTAILGMYSK 96
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
+ A VF+ M +K+ + WN+M+D + GQ+ +A+KL D MP D+ S+ M++G+
Sbjct: 97 RGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGF 156
Query: 118 ARIGKIHSA---------------------------------------RYIFDKVPAKDV 138
+ G A RY+ + +V
Sbjct: 157 VKKGFHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKNNV 216
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y G +E A E+F KM + V++WN+++ G+ + E + F +M+
Sbjct: 217 RVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEE 276
Query: 199 NVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KP+ +T T L+AC+++G ++ G R D ++ L+D+Y++ G +E
Sbjct: 277 GFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLED 336
Query: 258 SLEVFYKSQVKDVFCWNAMILGLAL-----HGYGYA-ALKLLGEMNDSCVKADDITFIGL 311
+L+V +K N +++G L HG A +L+ ++D VK+ I
Sbjct: 337 ALKVVQSMPMKP----NEVVIGSLLAACRNHGNNTVLAERLMKHLSDLNVKSHSNYVI-- 390
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRK 340
LS A EG R K G+ ++
Sbjct: 391 LSNMYAADAKWEGASRMRRKMKGLGLKKQ 419
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 37/236 (15%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL--GSLETGA 224
+ +++W + +T RS E F +M+ V+P ++T ++LS C + GS G
Sbjct: 9 ETIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFPSGSETLGD 68
Query: 225 RIHVYATDNGLASN------------------------------PHATT--ALIDMYAKC 252
+H YA GL N ++ T +ID Y +
Sbjct: 69 LLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRS 128
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G + ++++F K D+ W AM+ G G+ AL EM S VK D + I L
Sbjct: 129 GQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAAL 188
Query: 313 SACSHAGLVQEGCELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+AC++ G + G + M +DF ++ + ++DL R ++ A E+ + M
Sbjct: 189 NACTNLGALSLGLWVHRYVMSQDFKNNVRVSN--SLIDLYCRCGCVEFAREVFDKM 242
>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 722
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 258/468 (55%), Gaps = 13/468 (2%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+++F LL+ L+S + ++H I + G + V TA+L +Y LR + DA K+
Sbjct: 224 PDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKL 283
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS--FNIM--ISGYARIGKI 123
F+KMPEKD + WN M+ A+A G+ ++L M + S F + IS A++ +
Sbjct: 284 FDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCV 343
Query: 124 ----HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ +I V NSLI Y ++ A ++F M K+VI+W+ M+ GY
Sbjct: 344 DWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGY 403
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+++ + + LF +MK+ ++ D++ + ++L A ++G+LE +H Y+ GL S P
Sbjct: 404 VKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLP 463
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMN 297
TAL+ YAKCGSIE + +F + ++ KD+ WN+MI A HG KL M
Sbjct: 464 SLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMK 523
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
S K D +TF+GLL+AC ++GLV++G E F M + +G EHY CMV+LLGRA L+
Sbjct: 524 CSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLI 583
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFAN 416
A EL++ MP +P + G LLSAC +H ++ + A K++ + + G ++ +N
Sbjct: 584 SEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPR--NAGNYILLSN 641
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+YA+ G+W+ + R+ + + G+ K G S +E+NG +F H
Sbjct: 642 IYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQTH 689
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 144/358 (40%), Gaps = 72/358 (20%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
+H D ++P +L++ S+ G +HG +K GF V TAL +MY ++A
Sbjct: 120 SMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENA 179
Query: 65 FKVFEKMPEKDIIAWNSMLDA-----------FASCGQMDHAMKLIDLMPLKDVTSF--- 110
++F+K KD + W S L F G+M + D ++ F
Sbjct: 180 HQLFDKRSVKD-LGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAG 238
Query: 111 --------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
++S Y+++ + AR +FDK+P KD V WN +
Sbjct: 239 LNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIM 298
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
I AY G+ E ++LF M ++ D
Sbjct: 299 IAAYAREGKP-------------------------------TECLELFKSMARSGIRSDL 327
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T V+S+ A L ++ G + H + NG S +LIDMY +C ++ + ++F
Sbjct: 328 FTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNW 387
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
K V W+AMI G +G AL L +M ++AD + I +L A H G ++
Sbjct: 388 MTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALE 445
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 140/295 (47%), Gaps = 12/295 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ +D ++ ++ + L G H ++ G V V +L+ MY +
Sbjct: 318 MARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKI 377
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS-FNIMIS---G 116
+D A K+F M +K +I+W++M+ + GQ A+ L M + + F IMI+
Sbjct: 378 LDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPA 437
Query: 117 YARIGKIHSARYIFD---KVPAKDVVSWNS-LILAYTNAGEMEKAGEMFKKMLV--KNVI 170
+ IG + + +Y+ K+ + S N+ L++ Y G +E A +F++ + K++I
Sbjct: 438 FVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLI 497
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN+M++ + + + L++ MK N KPD +T +L+AC N G +E G
Sbjct: 498 MWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEM 557
Query: 231 TDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
T++ G + ++++ + G I ++ E+ +K D W ++ +H
Sbjct: 558 TESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMH 612
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/368 (21%), Positives = 164/368 (44%), Gaps = 21/368 (5%)
Query: 16 LLKAAGILSSSCIGLM----LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKM 71
LL +L S C + +H + I GF + + + L+ Y +L ++ + +VF +
Sbjct: 26 LLNTLSLLFSRCNSIQHLQQIHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSV 85
Query: 72 PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSAR 127
+ ++ +N++L G+ + + + M K D ++ ++ + + R
Sbjct: 86 IDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGR 145
Query: 128 YI--------FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
I FD DVV+ +L Y E E A ++F K VK++ +++ T
Sbjct: 146 TIHGYLVKLGFDLF---DVVA-TALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEG 201
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ + +F M A + PD T ++L A L S++ +H A + L+ +
Sbjct: 202 PQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDL 261
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TA++ +Y+K S+ + ++F K KD WN MI A G L+L M S
Sbjct: 262 LVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARS 321
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+++D T + ++S+ + V G + + + ++ G ++ + ++D+ ++LD
Sbjct: 322 GIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRN-GSDSQVSVHNSLIDMYCECKILDS 380
Query: 360 AIELIEAM 367
A ++ M
Sbjct: 381 ACKIFNWM 388
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 209/358 (58%), Gaps = 6/358 (1%)
Query: 111 NIMISGYARIGKIHSARYI-FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
N ++ Y +G I AR + + A DVVSWN+++ Y G++ A E+F +M +N+
Sbjct: 117 NSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNL 176
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++W+ MV +R+ + E + +FD M +PD + + SVL ACA+LG++E G +H Y
Sbjct: 177 VSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRY 236
Query: 230 ---ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+ G N TAL+DMY KCG +E + +VF +DV WNAMI GLA++GYG
Sbjct: 237 LETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYG 296
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL+L M ++ TFI +L AC+H G V EG +F M+ D+G+ + EHYGC
Sbjct: 297 ERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ-DYGIKPQREHYGC 355
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
+ DLLGRA ++ A L+ MP EP S GAL+S+C +H D+ +G+RV K + Y
Sbjct: 356 LADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPY- 414
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ NLYA G+WEEA R MM D G K G S IE+NG H+F++G H
Sbjct: 415 DGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRH 472
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 43/265 (16%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKV-FEKMPEKDIIAWNSMLDAFASCGQMDHA 95
K G H V +LLK+Y SL ID A +V + D+++WN+M+ + G + A
Sbjct: 105 FKCGALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAA 164
Query: 96 MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----DVV------------ 139
++ MP +++ S++ M+ R G+ A ++FD++ + DVV
Sbjct: 165 REVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHL 224
Query: 140 ------SW--------------------NSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
W +L+ Y G ME A ++F + ++V+ WN
Sbjct: 225 GAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWN 284
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
M+ G + ++LF M P+ T +VL AC + G ++ G R+ D
Sbjct: 285 AMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDY 344
Query: 234 GLASNPHATTALIDMYAKCGSIEQS 258
G+ L D+ + G++E++
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEA 369
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 160/460 (34%), Positives = 238/460 (51%), Gaps = 66/460 (14%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
+++ +PL+LK+ LSS+ ++H K+GF +V VQTALL Y S
Sbjct: 125 NHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYAS----------- 173
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
S + A +L D M ++V S+ M+SGYAR G I +A
Sbjct: 174 -------------------SVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVA 214
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+F+ +P +DV SWN+++ A T G L++E
Sbjct: 215 LFEDMPERDVPSWNAILAACTQNG-------------------------------LFLEA 243
Query: 189 VDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
V LF M +++P+ +TV VLSACA G+L+ IH +A L+S+ + +L+D
Sbjct: 244 VSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVD 303
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM---NDSCVKAD 304
+Y KCG++E++ VF + K + WN+MI ALHG A+ + EM N + +K D
Sbjct: 304 LYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPD 363
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITFIGLL+AC+H GLV +G F M FG+ ++EHYGC++DLLGRA D A+E++
Sbjct: 364 HITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVM 423
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
M + E+I G+LL+AC IH L++ + K + A N + G + M ANLY G W
Sbjct: 424 STMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVAL-NPNNGGYVAMMANLYGEMGNW 482
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
EEA R R M+ K G S IE++ H+F + H
Sbjct: 483 EEARRARKMIKHQNAYKPPGWSRIEIDNEVHQFYSLDKSH 522
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 121/260 (46%), Gaps = 32/260 (12%)
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEME--KAGEMFKKMLVKNVITWNTMV 176
R+ + AR+IFD+ + + +++ AY+++ + A F+ M+ ++V N +
Sbjct: 69 RLCNLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFI 128
Query: 177 -------TGYLRSQLYIEVV--DLFDEMKAGNVKPDYLTV-TSVLSACANLGSLETGARI 226
T YL S +V LF K+G Y+ V T++L + A+ S T AR
Sbjct: 129 YPLVLKSTPYLSSAFSTPLVHTHLF---KSGFHL--YVVVQTALLHSYASSVSHITLAR- 182
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
D N + TA++ YA+ G I ++ +F +DV WNA++ +G
Sbjct: 183 --QLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLF 240
Query: 287 YAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQ--EGCELFSR---MEKDFGVTRK 340
A+ L M N+ ++ +++T + +LSAC+ G +Q +G F+ + D V+
Sbjct: 241 LEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNS 300
Query: 341 LEHYGCMVDLLGRARLLDRA 360
L VDL G+ L+ A
Sbjct: 301 L------VDLYGKCGNLEEA 314
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 213/350 (60%), Gaps = 2/350 (0%)
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y++ ++ AR +FD + K+ V+WN++I Y G+++ A +MF KM +++I+W M+
Sbjct: 108 YSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMI 167
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G+++ + E + F EM+ VKPDY+ + + L+AC NLG+L G +H Y
Sbjct: 168 NGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFK 227
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+N + +LID+Y +CG +E + EVF K + + V WN++I+G A +G + +L +M
Sbjct: 228 NNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 287
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ K D +TF G L+ACSH GLV+EG F M++D ++ ++EHYGC+VDL RA
Sbjct: 288 QEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGR 347
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIH-QDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L+ A++++++MP +P E ++G+LL+AC H + + +R+ K + + N ++ +
Sbjct: 348 LEEALKVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHL-SDVNVKGHSNYVILS 406
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
N+YA+ G+WE A++ R M G+ K G S IE++ H F+AG H+
Sbjct: 407 NMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHV 456
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 178/389 (45%), Gaps = 55/389 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSS--SCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGS 57
M+ GV ++ +F LL G SS +G +LHG K G HV V TA+L MY
Sbjct: 51 MRLAGVEPNHITFIALLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSK 110
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
+ A VF+ M +K+ + WN+M+D + GQ+D+A+K+ D MP +D+ S+ MI+G+
Sbjct: 111 HSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGF 170
Query: 118 ARIGKIHSA---------------------------------------RYIFDKVPAKDV 138
+ G A RY+ + +V
Sbjct: 171 VKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNV 230
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y G +E A E+F KM + V++WN+++ G+ + E + F +M+
Sbjct: 231 KVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEE 290
Query: 199 NVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KPD +T T L+AC+++G +E G R D+ ++ L+D+Y++ G +E+
Sbjct: 291 GFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEE 350
Query: 258 SLEVFYKSQVKDVFCWNAMILGLAL-----HGYGYA-ALKLLGEMNDSCVKADDITFIGL 311
+L+V +K N +++G L HG A +L+ ++D VK I
Sbjct: 351 ALKVVQSMPMKP----NEVVIGSLLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVI-- 404
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRK 340
LS A EG R K G+ ++
Sbjct: 405 LSNMYAADGKWEGASQMRRKMKGLGLKKQ 433
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%)
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV----KNVITWNTMVTGYLRSQLY 185
++ ++ +VSW S I T G + +A + F M + N IT+ +++G
Sbjct: 17 LNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSG 76
Query: 186 IEVV-DLFD--EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E + DL K G+ + + T++L + ++ + Y D N
Sbjct: 77 SEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDK----NSVTW 132
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
+ID Y + G ++ ++++F K +D+ W AMI G G+ AL EM S VK
Sbjct: 133 NTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVK 192
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
D + I L+AC++ G + G + M +DF K+ + ++DL R ++ A
Sbjct: 193 PDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSN--SLIDLYCRCGCVEFAR 250
Query: 362 ELIEAM 367
E+ + M
Sbjct: 251 EVFDKM 256
>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
Length = 855
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 165/504 (32%), Positives = 255/504 (50%), Gaps = 41/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D+ ++ L A L S G LH + I++ YV +AL+++Y
Sbjct: 251 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 310
Query: 61 IDDAFKVFEKMPEKDIIAWNSML------DAFASC----GQMDHAMKLIDLMPLKDVTS- 109
+A +VF + +++ ++W ++ + F+ QM + ID L + S
Sbjct: 311 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 370
Query: 110 -FNIM---------------------------ISGYARIGKIHSARYIFDKVPAKDVVSW 141
FN M IS YA+ G + +A ++F + +D+VSW
Sbjct: 371 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 430
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNV 200
S+I AY+ G + KA E F M +N ITWN M+ Y++ + + ++ M +V
Sbjct: 431 TSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 490
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD++T ++ CA++G+ + G +I + GL N A I MY+KCG I ++ +
Sbjct: 491 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQK 550
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F KDV WNAMI G + HG G A K +M K D I+++ +LS CSH+GL
Sbjct: 551 LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGL 610
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
VQEG F M + G++ LEH+ CMVDLLGRA L A +LI+ MP +PT + GALL
Sbjct: 611 VQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 670
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC IH + E+ + AK V + + G M+ A +Y+ G+ +++ + R +M D GI
Sbjct: 671 SACKIHGNDELAELAAKHVF-ELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIK 729
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S +EV H F A + H
Sbjct: 730 KNPGYSWMEVENKVHVFKADDVSH 753
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 152/355 (42%), Gaps = 46/355 (12%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
HA + L++ G + LHG+ + G V++Q LL Y S + DA +
Sbjct: 17 HAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARR 76
Query: 67 VFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG--------- 116
+ + E ++I N M++ +A G + A +L D MP +DV S+N ++S
Sbjct: 77 LLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWM 136
Query: 117 ------------------------------------YARIGKIHSARYIFDKVPAKDVVS 140
+ R G + A +F ++ +
Sbjct: 137 SCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFC 196
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
NS++ Y ++ A E F+ M ++V++WN M+ +S E + L EM V
Sbjct: 197 RNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV 256
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+ D T TS L+ACA L SL G ++H + +P+ +ALI++YAKCGS +++
Sbjct: 257 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 316
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
VF Q ++ W +I G + +++L +M + D L+S C
Sbjct: 317 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 371
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 147/302 (48%), Gaps = 12/302 (3%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
++ + ++L Y L ID A + FE M E+D+++WN M+ A + G++ A+ L+ M
Sbjct: 194 IFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHR 253
Query: 105 K----DVTSFNIMISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEK 156
K D T++ ++ AR+ + + + KV P D ++LI Y G ++
Sbjct: 254 KGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKE 313
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F + +N ++W ++ G L+ + + + V+LF++M+A + D + +++S C N
Sbjct: 314 AKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 373
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L G ++H +G + +LI +YAKCG ++ + VF +D+ W +M
Sbjct: 374 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 433
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I + G A E D + IT+ +L A G ++G +++S M
Sbjct: 434 ITAYSQIGNIIKAR----EFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 489
Query: 337 VT 338
VT
Sbjct: 490 VT 491
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 48/308 (15%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
N+L+ AY + G + A + + + + NVIT N M+ GY + + +LFD M +V
Sbjct: 59 NTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 118
Query: 201 KPDYLTVTSVLS-------ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
+ T+ S S +C LG E ++ +P TAL+DM+ +CG
Sbjct: 119 -ASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 177
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLA-LHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
++ + +F + + +FC N+M+ G A L+G +A E + + D +++ ++
Sbjct: 178 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAI-----EYFEDMAERDVVSWNMMI 232
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
+A S +G V+E L M + GV +L+ L ARL
Sbjct: 233 AALSQSGRVREALGLVVEMHRK-GV--RLDSTTYTSSLTACARLFSLG------------ 277
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRN 432
G L A VI +I VA + LYA CG ++EA R N
Sbjct: 278 ---WGKQLHAKVIRSLPQIDPYVASALI---------------ELYAKCGSFKEAKRVFN 319
Query: 433 MMNDTGIV 440
+ D V
Sbjct: 320 SLQDRNSV 327
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 154/444 (34%), Positives = 234/444 (52%), Gaps = 41/444 (9%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ----------------------------- 91
I+ A K+F +P D +N++ AF S Q
Sbjct: 52 INYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIR 111
Query: 92 ---MDHAMKLIDLMPLK-----DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
++ K + LK D + N +I Y G + AR +F + +VVSW S
Sbjct: 112 ACKLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTS 171
Query: 144 LILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVK 201
L+ Y+ G +++A +F+ M K N ++WN M+ +++ + E LF M+ ++
Sbjct: 172 LVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKME 231
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D ++LSAC +G+LE G IH Y G+ + T +IDMY KCG ++++ V
Sbjct: 232 LDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHV 291
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC-VKADDITFIGLLSACSHAGL 320
F +VK V WN MI G A+HG G A++L EM + V D ITF+ +L+AC+H+GL
Sbjct: 292 FCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGL 351
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V+EG F M G+ EHYGCMVDLL RA L+ A ++I+ MP P ++LGALL
Sbjct: 352 VEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALL 411
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
AC IH +LE+G+ V V + + + G ++ N+YASCG+WE+ R +M+D G+
Sbjct: 412 GACRIHGNLELGEEVGNRV-IELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVK 470
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S+IE+ G ++F+AGG H
Sbjct: 471 KEPGFSMIEMEGVVNEFVAGGRDH 494
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 139/299 (46%), Gaps = 46/299 (15%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + ++FP L++A + + LH +K GF G Y L+ +Y + +DDA
Sbjct: 99 VTPNAFTFPSLIRACKLEEEA---KQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDAR 155
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-KDVTSFNIMISGYARIGKIH 124
+VF M + ++++W S++ ++ G +D A ++ +LMP K+ S+N MI+ + + +
Sbjct: 156 RVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFR 215
Query: 125 SARYIF-----------DKVPAKDVVS------------W-----------------NSL 144
A +F D+ A ++S W ++
Sbjct: 216 EAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTI 275
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPD 203
I Y G ++KA +F + VK V +WN M+ G+ + + LF EM + V PD
Sbjct: 276 IDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPD 335
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATD-NGLASNPHATTALIDMYAKCGSIEQSLEV 261
+T +VL+ACA+ G +E G Y D +G+ ++D+ A+ G +E++ +V
Sbjct: 336 SITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKV 394
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 39/236 (16%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G+ +H KTG + T ++ MY C+D AF VF + K + +WN M+ FA
Sbjct: 253 GMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAM 312
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
G+ + A++L M + + A D +++ +++ A
Sbjct: 313 HGKGEDAIRLFKEMEEEAMV--------------------------APDSITFVNVLTAC 346
Query: 149 TNAGEMEKAGEMFKKMLVKNVIT-----WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
++G +E+ F+ M+ + I + MV R+ E + DEM + PD
Sbjct: 347 AHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMP---MSPD 403
Query: 204 YLTVTSVLSACANLGSLETGARI--HVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ ++L AC G+LE G + V D N L +MYA CG EQ
Sbjct: 404 AAVLGALLGACRIHGNLELGEEVGNRVIELD---PENSGRYVILGNMYASCGKWEQ 456
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 112/282 (39%), Gaps = 43/282 (15%)
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR-SQLYIEVVDLFDEMKAGNVKPDYLTV 207
+ G++ A ++F + + +NT+ + SQ + + M V P+ T
Sbjct: 47 SKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTF 106
Query: 208 TSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
S++ AC LE A+ +H + G + +A LI +Y GS++ + VF
Sbjct: 107 PSLIRAC----KLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMS 162
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
+V W +++ G + G A ++ M K + +++ +++ +E
Sbjct: 163 DPNVVSWTSLVSGYSQWGLVDEAFRVFELMP---CKKNSVSWNAMIACFVKGNRFREAFA 219
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
LF RM V +K+E LDR + +LSAC
Sbjct: 220 LFRRMR----VEKKME--------------LDRFVA--------------ATMLSACTGV 247
Query: 387 QDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEA 427
LE G + K V K+ + D +L ++Y CG ++A
Sbjct: 248 GALEQGMWIHKYV-EKTGIVLDSKLATTIIDMYCKCGCLDKA 288
>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
Length = 545
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 150/447 (33%), Positives = 246/447 (55%), Gaps = 10/447 (2%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D +SFP LL A SS G LH I+ G ++V+TAL++ YG A
Sbjct: 102 RPDAFSFPPLLCACARASSLPTGASLHAAAIRLGVDADLFVRTALIQFYGRCGAAAAARA 161
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
+F+ + ++W +++ A+ + G + A +L D +P ++V +N M+ GY + G + A
Sbjct: 162 LFDSLTNPSEVSWTAIVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGA 221
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
R +FD++P + ++ SLI Y NAG M A +F K+ +++ W+TM++G ++
Sbjct: 222 RKLFDEMPERTPAAYTSLIGGYLNAGNMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPG 281
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-----IHVYATDNGLASNPHA 241
E + +F+E + + PD L + ++SAC+ LG++ T AR I +Y D +N H
Sbjct: 282 EALRIFNEFQKQEICPDELVIVGLMSACSQLGNI-TLARWIEGYIMIYPID---MNNVHV 337
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
LI+M AKCG++E++ +F V+DVF + +M+ G LHG A++L +M +
Sbjct: 338 MAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLEGI 397
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
D+ F +L+ACSHAGLV+EG F M+ ++ + +HY C+V LLGR +L A
Sbjct: 398 TPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNEYMIVPSGDHYACLVSLLGRFGMLRDAY 457
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
ELI++MP EP GALL C H D+E+G AK + + + G + +N+YA+
Sbjct: 458 ELIKSMPGEPHPGAWGALLGGCKFHCDIELGKIAAKKL-FEIEPENAGNYVSLSNIYANI 516
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVI 448
+W + R M GI K AG +++
Sbjct: 517 DRWGNVSETRAEMTGRGITKIAGCTLV 543
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 111/291 (38%), Gaps = 44/291 (15%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ R + + F+ ++ G +PD + +L ACA SL TGA +H A
Sbjct: 74 NAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHAAAIR 133
Query: 233 NGLASNPHATTALIDMYAKC-------------------------------GSIEQSLEV 261
G+ ++ TALI Y +C G I + E+
Sbjct: 134 LGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILTAREL 193
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + ++V WNAM+ G G A KL EM + A + L+ +AG +
Sbjct: 194 FDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAA----YTSLIGGYLNAGNM 249
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGA 378
LF ++E R L + M+ + A+ + + P E ++
Sbjct: 250 GAARTLFDKLED-----RDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVG 304
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM-FANLYASCGQWEEAN 428
L+SAC ++ + + + +++ +M N+ A CG E A
Sbjct: 305 LMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERAT 355
>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
Length = 545
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 150/447 (33%), Positives = 246/447 (55%), Gaps = 10/447 (2%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D +SFP LL A SS G LH I+ G ++V+TAL++ YG A
Sbjct: 102 RPDAFSFPPLLCACARASSLPTGASLHAAAIRLGVDADLFVRTALIQFYGRCGAAAAARA 161
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
+F+ + ++W +++ A+ + G + A +L D +P ++V +N M+ GY + G + A
Sbjct: 162 LFDSLTNPSEVSWTAIVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGA 221
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
R +FD++P + ++ SLI Y NAG M A +F K+ +++ W+TM++G ++
Sbjct: 222 RKLFDEMPERTPAAYTSLIGGYLNAGNMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPG 281
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-----IHVYATDNGLASNPHA 241
E + +F+E + + PD L + ++SAC+ LG++ T AR I +Y D +N H
Sbjct: 282 EALRIFNEFQKQEICPDELVIVGLMSACSQLGNI-TLARWIEGYIMIYPID---MNNVHV 337
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
LI+M AKCG++E++ +F V+DVF + +M+ G LHG A++L +M +
Sbjct: 338 MAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLEGI 397
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
D+ F +L+ACSHAGLV+EG F M+ ++ + +HY C+V LLGR +L A
Sbjct: 398 TPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNEYMIVPSGDHYACLVSLLGRFGMLRDAY 457
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
ELI++MP EP GALL C H D+E+G AK + + + G + +N+YA+
Sbjct: 458 ELIKSMPGEPHPGAWGALLGGCKFHCDIELGKIAAKKL-FEIEPENAGNYVSLSNIYANI 516
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVI 448
+W + R M GI K AG +++
Sbjct: 517 DRWGNVSETRAEMTGRGITKIAGCTLV 543
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 111/291 (38%), Gaps = 44/291 (15%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++ R + + F+ ++ G +PD + +L ACA SL TGA +H A
Sbjct: 74 NAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHAAAIR 133
Query: 233 NGLASNPHATTALIDMYAKC-------------------------------GSIEQSLEV 261
G+ ++ TALI Y +C G I + E+
Sbjct: 134 LGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILTAREL 193
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + ++V WNAM+ G G A KL EM + A + L+ +AG +
Sbjct: 194 FDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAA----YTSLIGGYLNAGNM 249
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGA 378
LF ++E R L + M+ + A+ + + P E ++
Sbjct: 250 GAARTLFDKLED-----RDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVG 304
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM-FANLYASCGQWEEAN 428
L+SAC ++ + + + +++ +M N+ A CG E A
Sbjct: 305 LMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERAT 355
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 158/475 (33%), Positives = 267/475 (56%), Gaps = 12/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + ++F +L + G+ +H IK+G ++V +++ MY
Sbjct: 184 MQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLM 243
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
+ DA VF+ M ++ ++WNSM+ F + G A +L M L+ V T F +I
Sbjct: 244 VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKL 303
Query: 117 YARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKML-VKNVIT 171
A I ++ A+ + +V D+ +L++AY+ E++ A ++F M V+NV++
Sbjct: 304 CANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVS 363
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACA-NLGSLETGARIHVY 229
W +++GY+++ ++LF +M+ V+P+ T +SVL+ACA S+E G + H
Sbjct: 364 WTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSC 423
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ +G ++ ++AL+ MYAK G+IE + EVF + +D+ WN+MI G A HG G +
Sbjct: 424 SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKS 483
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
LK+ EM ++ D ITFIG++SAC+HAGLV EG F M KD+ + +EHY CMVD
Sbjct: 484 LKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVD 543
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
L RA +L++A++LI MPF +I LL+AC +H ++++G+ A+ + + S
Sbjct: 544 LYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDS-A 602
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA+ G W+E + R +M+ + K AG S IEV F+AG + H
Sbjct: 603 AYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSH 657
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 167/340 (49%), Gaps = 11/340 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ G D S +LK G L +G +H Q IK GF V V T+L+ MY
Sbjct: 83 LRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTES 142
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
++D +VF++M K++++W S+L + G + A+KL M L+ + +F ++ G
Sbjct: 143 VEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGG 202
Query: 117 YARIGKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A G + + V + S NS++ Y+ + + A +F M +N ++W
Sbjct: 203 LAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSW 262
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N+M+ G++ + L +E +LF M+ VK +V+ CAN+ + ++H
Sbjct: 263 NSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIK 322
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ-VKDVFCWNAMILGLALHGYGYAALK 291
NG + + TAL+ Y+KC I+ + ++F V++V W A+I G +G A+
Sbjct: 323 NGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMN 382
Query: 292 LLGEM-NDSCVKADDITFIGLLSAC-SHAGLVQEGCELFS 329
L +M + V+ ++ TF +L+AC + V++G + S
Sbjct: 383 LFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHS 422
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 99/209 (47%), Gaps = 1/209 (0%)
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
++F + + + N ++ + R+ E ++LF ++ D +++ VL C L
Sbjct: 47 QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
G ++H G + T+L+DMY K S+E VF + +VK+V W +++
Sbjct: 107 DRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLA 166
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
G +G ALKL +M +K + TF +L + G V++G ++ + + K G+
Sbjct: 167 GYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS-GLD 225
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ MV++ ++ ++ A + ++M
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSM 254
>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
Length = 1260
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 189/585 (32%), Positives = 272/585 (46%), Gaps = 125/585 (21%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G +N++FP + KA L+ M+H IK+ F V+V TA + M+
Sbjct: 649 MKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNS 708
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT------------ 108
+D A KVFE+MPE+D WN+ML F G D A L M L ++T
Sbjct: 709 VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQS 768
Query: 109 -SF--------------------------NIMISGYARIGKIHSARYIFDKVPAKD--VV 139
SF N IS Y + G + SA+ +F+ + D VV
Sbjct: 769 ASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVV 828
Query: 140 SWNSLILAYTNAGEMEKA--------GEMFKKMLV------------------------- 166
SWNS+ AY+ GE A E FK L
Sbjct: 829 SWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHA 888
Query: 167 ------KNVITWNTMVTGYLRSQLYIEVVDLFDEM------------------------- 195
+++ NT ++ Y +S+ LFD M
Sbjct: 889 IHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEAL 948
Query: 196 -------KAGNVKPDYLTVTSVLSACANLGSLETG----ARIHVYA--TDNGLASNPHAT 242
K+G KPD +T+ S++S C GSLETG AR +Y DN + N
Sbjct: 949 ALFHAMIKSGE-KPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICN---- 1003
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
ALIDMY+KCGSI ++ ++F + K V W MI G AL+G ALKL +M D K
Sbjct: 1004 -ALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYK 1062
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
+ ITF+ +L AC+H+G +++G E F M++ + ++ L+HY CMVDLLGR L+ A+E
Sbjct: 1063 PNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALE 1122
Query: 363 LIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422
LI M +P I GALL+AC IH++++I ++ A+ + ++ + M AN+YA+ G
Sbjct: 1123 LIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEM-ANIYAAAG 1181
Query: 423 QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
W+ R R++M I K G SVI+VNG H F G GH+ N
Sbjct: 1182 MWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVEN 1226
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+V WN + + +E + LF EMK G +P+ T V ACA L + +H
Sbjct: 622 SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVH 681
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ + S+ TA +DM+ KC S++ + +VF + +D WNAM+ G G+
Sbjct: 682 AHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 741
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACS 316
A L EM + + D +T + L+ + S
Sbjct: 742 KAFSLFREMRLNEITPDSVTVMTLIQSAS 770
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 158/472 (33%), Positives = 255/472 (54%), Gaps = 15/472 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + D Y+ P LL AA + H K G H + +L+ MY +L
Sbjct: 122 MLRAALRPDAYTLPFLLLAAARCPAPAFAASAHALLQKLGLHNHDHTVHSLVTMYSNLGR 181
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A +VF+ + +D+++WNSM+ A+ + G D A ++ M + N +
Sbjct: 182 PRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVVLA 241
Query: 121 -----GKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
G + R++ + V + + + ++L+ Y GEM +A +F + K+ +
Sbjct: 242 ACRDAGDLALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVA 301
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++TGY ++ + E + LF M+ +PD +T+ VLSACA +G+LE G + YA
Sbjct: 302 WNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTELDRYAL 361
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
G SN + TAL+DMY+KCG + ++++VF K K+ WNA+I GLA +G G A++
Sbjct: 362 QRGFYSNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNGRGQEAIR 421
Query: 292 LLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
M ++ DDITFIG+LSAC HAGL+++G F + +F + K+EHY CMVDL
Sbjct: 422 QFELMRKQEGLRPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEHYSCMVDL 481
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK--MVCAKSNYLSD 408
L RA L+ A + IE +P +P +LGALL+AC +++E+ RV M+ SN +
Sbjct: 482 LARAGHLEEAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVSVRVINKIMLLEPSNSWN- 540
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
++ + +YAS + +++ R R +M + G+ K G S IEV+G +F AG
Sbjct: 541 --YVVSSKIYASSDRLDDSARMRGLMRERGVSKIPGCSWIEVSGRVLEFYAG 590
>gi|326517559|dbj|BAK03698.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 529
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 231/391 (59%), Gaps = 4/391 (1%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +F++MP +D+++WNSM+ A G++D A++L D MP ++ S+N +I G
Sbjct: 137 LPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDRAIELFDQMPERNAASWNAVICGLIAH 196
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN-VITWNTMVTGY 179
G + AR +F+++P + +SW ++I Y AG+++ A +F++M KN + WN M+ Y
Sbjct: 197 GHLTRAREMFEQMPVRSNISWITMISGYAKAGDVQAAAGLFERMENKNDLYAWNAMIACY 256
Query: 180 LRSQLYIEVVDLFDEMKAGNV--KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
++ E + +F+ M +V P+ T +SV SAC+ LG+L G + + G+
Sbjct: 257 AQNGCAREAIGVFNRMLKPHVCVLPNEKTFSSVTSACSQLGNLRFGLWVQSFMVSLGIEL 316
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ H TAL+D+Y K G I+++ ++F +DV ++AMI+G ++G A+ L EM+
Sbjct: 317 DDHLRTALVDLYTKSGQIDRAFDLFKGLSKRDVVSYSAMIVGCGMNGKLNEAIGLFNEMS 376
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
D+ + + ++F+GLLSA +HAGLV+E F+ M + + +EHY MVDLLGR+ L
Sbjct: 377 DANILPNAVSFVGLLSAYNHAGLVEEARACFTSMSSKYKIRPSMEHYTIMVDLLGRSGKL 436
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
D A +LI MP +P S+ GALL +C +H ++E+G+ +A C + G ++ N+
Sbjct: 437 DEAFQLIMQMPMQPRASVWGALLLSCRLHNNVELGEVIASK-CFEQAPGESGYYILLGNI 495
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
YAS +W++ R R M + + K GSS +
Sbjct: 496 YASANKWDKVRRLRKTMKERCLSKMPGSSWV 526
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + +F + A L + GL + + G +++TAL+ +Y ID AF
Sbjct: 279 VLPNEKTFSSVTSACSQLGNLRFGLWVQSFMVSLGIELDDHLRTALVDLYTKSGQIDRAF 338
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIG 121
+F+ + ++D++++++M+ G+++ A+ L + M L + SF ++S Y G
Sbjct: 339 DLFKGLSKRDVVSYSAMIVGCGMNGKLNEAIGLFNEMSDANILPNAVSFVGLLSAYNHAG 398
Query: 122 KIHSARYIFDKVPAK 136
+ AR F + +K
Sbjct: 399 LVEEARACFTSMSSK 413
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 212 SACANLGSLET-GARIHVYATDNGLASNPHA----TTALIDMYAKCGSIEQSLEVFYKSQ 266
+A A+L S + AR + T PH+ +L+ + G + + +F +
Sbjct: 89 AALAHLYSRDPVAARSLLDETPPARGRAPHSLLVSRNSLLASLLRSGDLPAARALFDQMP 148
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA----------------------- 303
V+DV WN+M+ GLA G A++L +M + +
Sbjct: 149 VRDVVSWNSMVAGLAKAGRLDRAIELFDQMPERNAASWNAVICGLIAHGHLTRAREMFEQ 208
Query: 304 ----DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+I++I ++S + AG VQ LF RME L + M+ +
Sbjct: 209 MPVRSNISWITMISGYAKAGDVQAAAGLFERMENK----NDLYAWNAMIACYAQNGCARE 264
Query: 360 AIELIEAM--PFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
AI + M P P E ++ SAC +L G V + + L D
Sbjct: 265 AIGVFNRMLKPHVCVLPNEKTFSSVTSACSQLGNLRFGLWVQSFMVSLGIELDDHLRTAL 324
Query: 415 ANLYASCGQWEEA 427
+LY GQ + A
Sbjct: 325 VDLYTKSGQIDRA 337
>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 754
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 243/431 (56%), Gaps = 17/431 (3%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMY---GSLRCIDDAFKVFEKMPEKDIIAWNSMLDA 85
G H + +K ALL MY G L + F F K E W++M+
Sbjct: 330 GKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSFHKSSED----WSTMILG 385
Query: 86 FASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKD 137
+++ GQ + + + M L D+ S +IS +++G I+ R Y ++
Sbjct: 386 YSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIEN 445
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V NSL+ Y +G + +F + L ++VI+WNT+++ Y +S + E + LFD+M
Sbjct: 446 VSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVK 505
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
V P+ +T VLSACA+L SL+ G +IH Y +NG SN TALIDMYAKCG +E
Sbjct: 506 EKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELET 565
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
S ++F ++ +DV WN MI +HG+ +A+++ M +S +K + TF+ LLSAC+H
Sbjct: 566 SRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNH 625
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
G V EG LF RM+K +G+ L+HY ++DLLGR+ L+ A L+ +MP P ++ G
Sbjct: 626 TGHVLEGRHLFDRMQK-YGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWG 684
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
+LLSAC IH + E+G R+A+ +S+ +DG ++ ++LY+ G+W+E + R+MM
Sbjct: 685 SLLSACKIHNEFEVGVRLARYA-IESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKR 743
Query: 438 GIVKTAGSSVI 448
G+ K AG S +
Sbjct: 744 GVEKRAGWSAL 754
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 134/316 (42%), Gaps = 9/316 (2%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
I H I TG +V+ T L+ Y R + +F + KDI WNS++ +
Sbjct: 25 IRFWFHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHF 84
Query: 88 SCGQMDHAMKLIDLM----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143
S G A M L + + +++S A + + I + NS
Sbjct: 85 SNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNS 144
Query: 144 -----LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
I Y+ G +E A MF ++ VK+V+TW ++ GY+++ + EM
Sbjct: 145 AIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRI 204
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
P+Y T+ S AC +L +L G +H A NG + ++ MY++CGS E++
Sbjct: 205 GGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEA 264
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
F K KD+ W ++I + G L L EM S + D+I +L ++
Sbjct: 265 YRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNS 324
Query: 319 GLVQEGCELFSRMEKD 334
+ EG +R+ K
Sbjct: 325 DRIFEGKAFHARILKQ 340
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 98/478 (20%), Positives = 201/478 (42%), Gaps = 51/478 (10%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLRCIDDAFKV 67
+ ++ P+++ L G+ +HG T K G F G+ + ++ + MY ++ A +
Sbjct: 107 NQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIM 166
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMK-LIDLMPLKDVTSFNIMISGYARI------ 120
F ++ KD++ W +++ + + +K L ++ + ++ + SG+
Sbjct: 167 FSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDAL 226
Query: 121 --GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
GK + + +VV ++++ Y+ G E+A F K+ K++I+W +++
Sbjct: 227 VEGKCLHGLALKNGFLCFEVVK-STILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAV 285
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+ + L E + LF EM+A + PD + ++ +L N + G H A +
Sbjct: 286 HSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALS 345
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
AL+ MY K G + + ++F+ K W+ MILG + G + L EM
Sbjct: 346 GITHNALLSMYCKFGHLGTANKIFHSFH-KSSEDWSTMILGYSNMGQKEKCISFLREMLL 404
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA---- 354
+ D + + ++S+CS G + G + K+ + + ++D+ G++
Sbjct: 405 LGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKN-SIIENVSVANSLMDMYGKSGHVT 463
Query: 355 -------RLLDR--------------------AIELIEAMPFE---PTESILGALLSACV 384
R L R AI L + M E P + +LSAC
Sbjct: 464 ATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACA 523
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCGQWEEANRWRNMMNDTGIV 440
L+ G+++ + + K N + A ++YA CG+ E + + N + ++
Sbjct: 524 HLASLDEGEKIHQYI--KENGFESNITIRTALIDMYAKCGELETSRKLFNSTEERDVI 579
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 158/472 (33%), Positives = 243/472 (51%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G + SF +L + G +H Q + TG V V TAL++MY
Sbjct: 254 MQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGS 313
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
I+ A +VF+KM +D+++W M+ +A ++ A L M + + I +I+
Sbjct: 314 IEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINA 373
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + AR I +V D++ +L+ Y G ++ A ++F M ++V++W
Sbjct: 374 CASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSW 433
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+ M+ Y+ + E + F MK NV+PD +T ++L+AC +LG+L+ G I+ A
Sbjct: 434 SAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIK 493
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L S+ ALI+M K GSIE++ +F +DV WN MI G +LHG AL L
Sbjct: 494 ADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDL 553
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M + + +TF+G+LSACS AG V+EG FS + G+ +E YGCMVDLLG
Sbjct: 554 FDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLG 613
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LD A LI MP +P SI LL+AC I+ +L++ +R A+ C S +
Sbjct: 614 RAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAER-CLMSEPYDGAVYV 672
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+++YA+ G WE + R +M G+ K G + IEV G H F+ H
Sbjct: 673 QLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSH 724
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 165/337 (48%), Gaps = 12/337 (3%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
H D+ ++ L + +L + +G + I++G ++Y L+K++ + +A +
Sbjct: 58 HIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQ 117
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISGYA---- 118
F+ + K ++ WN+++ +A G + A +++D + +F I++ +
Sbjct: 118 TFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAG 177
Query: 119 -RIGKIHSARYIFDKVP-AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
++GK A+ I KV D +L+ Y G M+ A ++F + ++V T+N M+
Sbjct: 178 LKLGKEFHAQVI--KVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMI 235
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY +S + LF M+ KP+ ++ S+L C+ +L G +H + GL
Sbjct: 236 GGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLV 295
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ TALI MY CGSIE + VF K +V+DV W MI G A + A L M
Sbjct: 296 DDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATM 355
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+ ++ D IT+I +++AC+ + + E+ S++ +
Sbjct: 356 QEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 110/285 (38%), Gaps = 35/285 (12%)
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
D+ + G+ D T + C L G ++ + +G N + LI ++
Sbjct: 47 DVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLH 106
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
+ CG++ ++ + F + K V WNA+I G A G+ A L +M D ++ ITF+
Sbjct: 107 SICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFL 166
Query: 310 GLLSACSHAGLVQEGCELFSRMEK-----DFGV-------------------------TR 339
+L ACS ++ G E +++ K DF + R
Sbjct: 167 IVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKR 226
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVA 396
+ + M+ ++ ++A +L M F+P ++L C + L G V
Sbjct: 227 DVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVH 286
Query: 397 KMVCAKSNYLSDGEL-MMFANLYASCGQWEEANRWRNMMNDTGIV 440
C + + D + +Y CG E A R + M +V
Sbjct: 287 AQ-CMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVV 330
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 215/354 (60%), Gaps = 2/354 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+I Y++ G++ AR +FD + K+ V+WN++I Y +G+++ A +MF KM +++I+W
Sbjct: 115 IIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISW 174
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+ G++ + E + F EM+ VKPDY+ + + L+AC NLG+L G +H Y
Sbjct: 175 TAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMS 234
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+N + +LID+Y +CG +E + +VF K + + V WN++I+G A +G + +L
Sbjct: 235 QDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVY 294
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M + K D +TF G L+ACSH GLV+EG F M D+ ++ ++EHYGC+VDL
Sbjct: 295 FRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYS 354
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIH-QDLEIGDRVAKMVCAKSNYLSDGEL 411
RA L+ A++L+++MP +P E ++G+LL+AC H + + +++ K + N S
Sbjct: 355 RAGRLEDALKLVQSMPMKPNEVVIGSLLAACRNHGNNTVLAEKLMKHL-TDLNVKSHSNY 413
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
++ +N+YA+ G+WE A++ R M G+ K G S IE++ H F+AG H+
Sbjct: 414 VILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHV 467
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 175/389 (44%), Gaps = 55/389 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSS--SCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGS 57
M+ GV ++ +F +L G S +G +LHG K G HV V TA++ MY
Sbjct: 62 MRLAGVEPNHITFIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSK 121
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
+ A VF+ M +K+ + WN+M+D + GQ+D+A K+ D MP +D+ S+ MI+G+
Sbjct: 122 RGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGF 181
Query: 118 ARIGKIHSA---------------------------------------RYIFDKVPAKDV 138
G A RY+ + +V
Sbjct: 182 VNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNV 241
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y G +E A ++F KM + V++WN+++ G+ + E + F +M+
Sbjct: 242 RVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEE 301
Query: 199 NVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KPD +T T L+AC+++G +E G R + +D ++ L+D+Y++ G +E
Sbjct: 302 RFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLED 361
Query: 258 SLEVFYKSQVKDVFCWNAMILGLAL-----HGYGYA-ALKLLGEMNDSCVKADDITFIGL 311
+L++ +K N +++G L HG A KL+ + D VK+ I
Sbjct: 362 ALKLVQSMPMKP----NEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVI-- 415
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRK 340
LS A EG R K G+ ++
Sbjct: 416 LSNMYAADGKWEGASKMRRKMKGLGLKKQ 444
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 37/236 (15%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL--GSLETGA 224
+N ++W + +T R+ E F +M+ V+P+++T ++LS C + GS G
Sbjct: 34 ENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSGSEALGD 93
Query: 225 RIHVYATDNGLASNP-HATTALIDMYAK-------------------------------C 252
+H YA GL N TA+I MY+K
Sbjct: 94 LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRS 153
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G ++ + ++F K +D+ W AMI G G+ AL EM S VK D + I L
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAAL 213
Query: 313 SACSHAGLVQEGCELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+AC++ G + G + M +DF ++ + ++DL R ++ A ++ + M
Sbjct: 214 NACTNLGALSFGLWVHRYVMSQDFKNNVRVSN--SLIDLYCRCGCVEFARQVFDKM 267
>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 607
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 258/468 (55%), Gaps = 13/468 (2%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+++F LL+ L+S + ++H I + G + V TA+L +Y LR + DA K+
Sbjct: 109 PDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKL 168
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS--FNIM--ISGYARIGKI 123
F+KMPEKD + WN M+ A+A G+ ++L M + S F + IS A++ +
Sbjct: 169 FDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCV 228
Query: 124 ----HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ +I V NSLI Y ++ A ++F M K+VI+W+ M+ GY
Sbjct: 229 DWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGY 288
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+++ + + LF +MK+ ++ D++ + ++L A ++G+LE +H Y+ GL S P
Sbjct: 289 VKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLP 348
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMN 297
TAL+ YAKCGSIE + +F + ++ KD+ WN+MI A HG KL M
Sbjct: 349 SLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMK 408
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
S K D +TF+GLL+AC ++GLV++G E F M + +G EHY CMV+LLGRA L+
Sbjct: 409 CSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLI 468
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFAN 416
A EL++ MP +P + G LLSAC +H ++ + A K++ + + G ++ +N
Sbjct: 469 SEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPR--NAGNYILLSN 526
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+YA+ G+W+ + R+ + + G+ K G S +E+NG +F H
Sbjct: 527 IYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQTH 574
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 144/357 (40%), Gaps = 72/357 (20%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+H D ++P +L++ S+ G +HG +K GF V TAL +MY ++A
Sbjct: 6 MHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAH 65
Query: 66 KVFEKMPEKDIIAWNSMLDA-----------FASCGQMDHAMKLIDLMPLKDVTSF---- 110
++F+K KD + W S L F G+M + D ++ F
Sbjct: 66 QLFDKRSVKD-LGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGL 124
Query: 111 -------------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
++S Y+++ + AR +FDK+P KD V WN +I
Sbjct: 125 NSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMI 184
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
AY G+ E ++LF M ++ D
Sbjct: 185 AAYAREGKP-------------------------------TECLELFKSMARSGIRSDLF 213
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T V+S+ A L ++ G + H + NG S +LIDMY +C ++ + ++F
Sbjct: 214 TALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWM 273
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
K V W+AMI G +G AL L +M ++AD + I +L A H G ++
Sbjct: 274 TDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALE 330
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 140/295 (47%), Gaps = 12/295 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ +D ++ ++ + L G H ++ G V V +L+ MY +
Sbjct: 203 MARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKI 262
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS-FNIMIS---G 116
+D A K+F M +K +I+W++M+ + GQ A+ L M + + F IMI+
Sbjct: 263 LDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPA 322
Query: 117 YARIGKIHSARYIFD---KVPAKDVVSWNS-LILAYTNAGEMEKAGEMFKKMLV--KNVI 170
+ IG + + +Y+ K+ + S N+ L++ Y G +E A +F++ + K++I
Sbjct: 323 FVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLI 382
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN+M++ + + + L++ MK N KPD +T +L+AC N G +E G
Sbjct: 383 MWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEM 442
Query: 231 TDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
T++ G + ++++ + G I ++ E+ +K D W ++ +H
Sbjct: 443 TESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMH 497
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 110/231 (47%), Gaps = 2/231 (0%)
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
DVV+ +L Y E E A ++F K VK++ +++ T ++ + +F M
Sbjct: 45 DVVA-TALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMI 103
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
A + PD T ++L A L S++ +H A + L+ + TA++ +Y+K S+
Sbjct: 104 AEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLV 163
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ ++F K KD WN MI A G L+L M S +++D T + ++S+ +
Sbjct: 164 DARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIA 223
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
V G + + + ++ G ++ + ++D+ ++LD A ++ M
Sbjct: 224 QLKCVDWGKQTHAHILRN-GSDSQVSVHNSLIDMYCECKILDSACKIFNWM 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 6/174 (3%)
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M A ++ PD T VL +C++ ++ G IH Y G TAL +MY +C
Sbjct: 1 MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE 60
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
E + ++F K VKD+ +++ + G ++ G M + D TF LL
Sbjct: 61 FENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRF 120
Query: 315 CSHAGLVQ-----EGCELFSRMEKDFGV-TRKLEHYGCMVDLLGRARLLDRAIE 362
+ +Q + S++ D V T L Y + L+ +L D+ E
Sbjct: 121 IAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPE 174
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 152/446 (34%), Positives = 247/446 (55%), Gaps = 11/446 (2%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G+ +H +IK G ++V L+ +Y + D KVF++M +D+I+WNS++ A+
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYEL 325
Query: 89 CGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKVPAK-----DVV 139
Q A+ L M L D + + S +++G I + R + K D+
Sbjct: 326 NEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDIT 385
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-G 198
N++++ Y G ++ A +F + +VI+WNT+++GY ++ E +++++ M+ G
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEG 445
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+ + T SVL AC+ G+L G ++H NGL + T+L DMY KCG +E +
Sbjct: 446 EIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDA 505
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
L +FY+ + WN +I HG+G A+ L EM D VK D ITF+ LLSACSH+
Sbjct: 506 LSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHS 565
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
GLV EG F M+ D+G+T L+HYGCMVD+ GRA L+ A++ I++M +P SI GA
Sbjct: 566 GLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGA 625
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
LLSAC +H ++++G ++A + G ++ +N+YAS G+WE + R++ + G
Sbjct: 626 LLSACRVHGNVDLG-KIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKG 684
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ KT G S +EV+ F G H
Sbjct: 685 LRKTPGWSSMEVDNKVEVFYTGNQTH 710
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 182/372 (48%), Gaps = 14/372 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D +FP +LKA + G +H +K GF VYV +L+ +Y + + +A
Sbjct: 148 GLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNA 204
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG--- 121
+F++MP +D+ +WN+M+ + G A+ L + + D + ++S G
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFN 264
Query: 122 ---KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
IHS Y ++ N LI Y G + ++F +M V+++I+WN+++
Sbjct: 265 RGVTIHS--YSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKA 322
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LAS 237
Y ++ + + LF EM+ ++PD LT+ S+ S + LG + + + G
Sbjct: 323 YELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLE 382
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ A++ MYAK G ++ + VF DV WN +I G A +G+ A+++ M
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIME 442
Query: 298 DSC-VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ + A+ T++ +L ACS AG +++G +L R+ K+ G+ + + D+ G+
Sbjct: 443 EEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGR 501
Query: 357 LDRAIELIEAMP 368
L+ A+ L +P
Sbjct: 502 LEDALSLFYQIP 513
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 14/299 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH + + + +V + L+ +Y L + A F+ + +D+ AWN M+ + G
Sbjct: 73 LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN 132
Query: 92 MDHAMKLIDLMPL-----KDVTSFNIMISGYARI---GKIHSARYIFDKVPAKDVVSWNS 143
++ L L D +F ++ + KIH F + DV S
Sbjct: 133 SSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFM--WDVYVAAS 190
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y+ + A +F +M V+++ +WN M++GY +S E + L + ++A D
Sbjct: 191 LIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA----MD 246
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+TV S+LSAC G G IH Y+ +GL S + LID+YA+ G + +VF
Sbjct: 247 SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFD 306
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ V+D+ WN++I L+ A+ L EM S ++ D +T I L S S G ++
Sbjct: 307 RMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIR 365
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 8/179 (4%)
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
L D K GN + V ++ C NL S + +H + N + L+++Y
Sbjct: 41 LQDCWKNGNESKEIDDVHTLFRYCTNLQSAKC---LHARLVVSKQIQNVCISAKLVNLYC 97
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG-EMNDSCVKADDITFI 309
G++ + F Q +DV+ WN MI G G ++ M S + D TF
Sbjct: 98 YLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFP 157
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+L AC V +G ++ K FG + ++ L R + + A L + MP
Sbjct: 158 SVLKACR---TVIDGNKIHCLALK-FGFMWDVYVAASLIHLYSRYKAVGNARILFDEMP 212
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/438 (33%), Positives = 253/438 (57%), Gaps = 11/438 (2%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
H K H + +L+ +Y L A KVF +P +D+++WN+M+ A+ G
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210
Query: 93 DHAMKLI-----DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVVSWNS 143
+++ D + + + ++++ G + R++ + + D + ++
Sbjct: 211 GEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSA 270
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ Y GE+ +A +F ++ K+V+ WN M+TGY ++ + E + LF MK V PD
Sbjct: 271 LVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPD 330
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T+ VLSAC+ +G+LE G+ + YA+ GL +N + TAL+DMYAKCG +++++EVF
Sbjct: 331 KITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFR 390
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQ 322
K + K+V WNA+I GLA +G G A++ M N+ +K DDITFIG+LSAC HAGLV+
Sbjct: 391 KMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVK 450
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382
+G F+ + +F + K+EHY CMVD L R+ L+ + IE +P + +LGALL+A
Sbjct: 451 DGKRWFNSLTSEFQIIPKIEHYSCMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGALLAA 510
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
C +++EIG+RV + + + ++ + +YAS G+ +++ + R +M + G+ KT
Sbjct: 511 CRKCKNVEIGERVINRII-QLEPTNSWNYVVSSKIYASSGRLDDSAKMRGLMRERGVNKT 569
Query: 443 AGSSVIEVNGSYHKFLAG 460
G S +E++G +F AG
Sbjct: 570 PGCSWVEISGKVLEFYAG 587
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 34/231 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ GV D + +L A + + +G L G G +VYV TAL+ MY
Sbjct: 322 MKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGD 381
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A +VF KM K++ +WN+++ A GQ D A++ +LM +D
Sbjct: 382 LDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLK----------- 430
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
D +++ ++ A +AG ++ F + ++ + ++ M
Sbjct: 431 ---------------PDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCM 475
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
V RS EV D +++ K D + + ++L+AC ++E G R+
Sbjct: 476 VDPLARSGHLEEVWDFIEKIPD---KVDAVMLGALLAACRKCKNVEIGERV 523
>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
Length = 865
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 165/504 (32%), Positives = 255/504 (50%), Gaps = 41/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D+ ++ L A L S G LH + I++ YV +AL+++Y
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320
Query: 61 IDDAFKVFEKMPEKDIIAWNSML------DAFASC----GQMDHAMKLIDLMPLKDVTS- 109
+A +VF + +++ ++W ++ + F+ QM + ID L + S
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380
Query: 110 -FNIM---------------------------ISGYARIGKIHSARYIFDKVPAKDVVSW 141
FN M IS YA+ G + +A ++F + +D+VSW
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNV 200
S+I AY+ G + KA E F M +N ITWN M+ Y++ + + ++ M +V
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD++T ++ CA++G+ + G +I + GL N A I MY+KCG I ++ +
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQK 560
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F KDV WNAMI G + HG G A K +M K D I+++ +LS CSH+GL
Sbjct: 561 LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGL 620
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
VQEG F M + G++ LEH+ CMVDLLGRA L A +LI+ MP +PT + GALL
Sbjct: 621 VQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 680
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC IH + E+ + AK V + + G M+ A +Y+ G+ +++ + R +M D GI
Sbjct: 681 SACKIHGNDELAELAAKHV-FELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIK 739
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S +EV H F A + H
Sbjct: 740 KNPGYSWMEVENKVHVFKADDVSH 763
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 147/302 (48%), Gaps = 12/302 (3%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
++ + ++L Y L ID A + FE M E+D+++WN M+ A + G++ A+ L+ M
Sbjct: 204 IFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHR 263
Query: 105 K----DVTSFNIMISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEK 156
K D T++ ++ AR+ + + + KV P D ++LI Y G ++
Sbjct: 264 KGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKE 323
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F + +N ++W ++ G L+ + + + V+LF++M+A + D + +++S C N
Sbjct: 324 AKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 383
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L G ++H +G + +LI +YAKCG ++ + VF +D+ W +M
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I + G A E D + IT+ +L A G ++G +++S M
Sbjct: 444 ITAYSQIGNIIKAR----EFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 499
Query: 337 VT 338
VT
Sbjct: 500 VT 501
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 145/356 (40%), Gaps = 72/356 (20%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGS----------LRC--------------------- 60
LHG+ + G V++Q LL Y S LR
Sbjct: 26 LHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQG 85
Query: 61 -IDDAFKVFEKMPEKDIIAWNSML---------------------------DAFASCGQM 92
+ DA ++F++MP +D+ +WN+++ +AF C M
Sbjct: 86 SLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVM 145
Query: 93 DH--AMKLIDLMP-----------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
A+ +L P D ++ + R G + A +F ++ +
Sbjct: 146 KSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIF 205
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
NS++ Y ++ A E F+ M ++V++WN M+ +S E + L EM
Sbjct: 206 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG 265
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V+ D T TS L+ACA L SL G ++H + +P+ +ALI++YAKCGS +++
Sbjct: 266 VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAK 325
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
VF Q ++ W +I G + +++L +M + D L+S C
Sbjct: 326 RVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 150/333 (45%), Gaps = 41/333 (12%)
Query: 111 NIMISGYARIGKIHSARYIFD-KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
N ++ Y G + AR + + +V++ N ++ Y G + A E+F +M ++V
Sbjct: 43 NTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 102
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+WNT+++GY +++ +++ ++ F M ++G+ P+ T V+ +C LG E ++
Sbjct: 103 ASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLG 162
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA-LHGYGY 287
+P TAL+DM+ +CG ++ + +F + + +FC N+M+ G A L+G +
Sbjct: 163 LFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDH 222
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
A E + + D +++ +++A S +G V+E L M + GV +L+
Sbjct: 223 AI-----EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK-GV--RLDSTTYT 274
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
L ARL G L A VI +I VA +
Sbjct: 275 SSLTACARLFSLG---------------WGKQLHAKVIRSLPQIDPYVASALI------- 312
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
LYA CG ++EA R N + D V
Sbjct: 313 --------ELYAKCGSFKEAKRVFNSLQDRNSV 337
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 240/429 (55%), Gaps = 10/429 (2%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V V TALL MY + A +VFE M ++ + W++++ F CG+M A L M
Sbjct: 268 VLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLA 327
Query: 105 KDV-----TSFNIMISGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEME 155
+ + TS + A + + + + + D+ + NSL+ Y AG ++
Sbjct: 328 QGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLID 387
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
+A +F +M+VK+ ++++ +V+GY+++ E +F +M+A NV+PD T+ S++ AC+
Sbjct: 388 QATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACS 447
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
+L +L+ G H G+AS ALIDMYAKCG I+ S ++F +D+ WN
Sbjct: 448 HLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNT 507
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
MI G +HG G A L +M + DD+TFI L+SACSH+GLV EG F M +
Sbjct: 508 MIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKY 567
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395
G+T ++EHY MVDLL R LD A + I+ MP + + GALL AC +H+++++G +V
Sbjct: 568 GITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQV 627
Query: 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYH 455
+ M+ + G ++ +N++++ G+++EA R + + G K+ G S IE+NGS H
Sbjct: 628 SSMI-QQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLH 686
Query: 456 KFLAGGIGH 464
F+ G H
Sbjct: 687 AFIGGDRSH 695
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 206/448 (45%), Gaps = 34/448 (7%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
+NY+FP +LKA L +H + G ++V TAL+ +Y A VF
Sbjct: 128 NNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVF 187
Query: 69 EKMPEKDIIAWNSMLDAFASCG------------QMDHAMK---LIDLMPLKDVTSFNIM 113
+MP +D++AWN+ML +A G Q DHA L+ L+PL + +
Sbjct: 188 RRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPL--LAQHGAL 245
Query: 114 ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
G R +S R V+ +L+ Y G + A +F+ M V+N +TW+
Sbjct: 246 SQG--RAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWS 303
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV---LSACANLGSLETGARIHVYA 230
+V G++ +E LF +M A + +L+ TSV L ACANL L G ++H
Sbjct: 304 ALVGGFVLCGRMLEAFSLFKDMLAQGLC--FLSPTSVASALRACANLSDLCLGKQLHALL 361
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+GL ++ A +L+ MYAK G I+Q+ +F + VKD ++A++ G +G A
Sbjct: 362 AKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAF 421
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG-CELFSRMEKDFGVTRKLEHYGCMVD 349
++ +M V+ D T + L+ ACSH +Q G C S + + G+ + ++D
Sbjct: 422 RVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR--GIASETSICNALID 479
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
+ + +D + ++ + MP S +++ IH +G + + +
Sbjct: 480 MYAKCGRIDLSRQIFDVMPARDIVS-WNTMIAGYGIH---GLGKEATALFLDMKHQACEP 535
Query: 410 ELMMFANLYASC---GQWEEANRWRNMM 434
+ + F L ++C G E RW +MM
Sbjct: 536 DDVTFICLISACSHSGLVTEGKRWFHMM 563
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 3/174 (1%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G++ A +F ++ + +N ++ Y + + + +P+ T VL
Sbjct: 77 GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
AC+ L L + +H +A GL ++ +TAL+D+YAKC S + VF + +DV
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196
Query: 272 CWNAMILGLALHG-YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
WNAM+ G ALHG Y LL +D A T + LL + G + +G
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQDDHAPNAS--TLVALLPLLAQHGALSQG 248
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 19/253 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + L+ A L++ G HG I G + AL+ MY
Sbjct: 427 MQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGR 486
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
ID + ++F+ MP +DI++WN+M+ + G A L M + D +F +IS
Sbjct: 487 IDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISA 546
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + + F + K ++ + ++ G +++A + + M +K +V
Sbjct: 547 CSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVR 606
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD----YLTVTSVLSACANLGSLETGARI 226
W ++ G R I++ M + P+ ++ ++++ SA G + A +
Sbjct: 607 VWGALL-GACRVHKNIDLGKQVSSM-IQQLGPEGTGNFVLLSNIFSAA---GRFDEAAEV 661
Query: 227 HVYATDNGLASNP 239
+ + G +P
Sbjct: 662 RIIQKEQGFKKSP 674
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 248/467 (53%), Gaps = 43/467 (9%)
Query: 1 MQELGVHAD-NYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
++ +G+ A + P LL+A S HG + G +V TAL++ Y +
Sbjct: 59 LRRVGLPAPGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACG 118
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY-- 117
++DA +VF+ MP++D++AW MLD + + A+ L M V ++I+
Sbjct: 119 RVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLS 178
Query: 118 -------ARIGK-IHS-----------------------------ARYIFDKVPAKDVVS 140
R GK IHS A ++++V K++V
Sbjct: 179 TCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVL 238
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+++ Y G++E A +F M K+V++W+ M+ GY S +E ++LF +M+ V
Sbjct: 239 STTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGV 298
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KPD +T+ SV+SACAN+G+LE IH + ++ + ALIDM++KCGS+ +L+
Sbjct: 299 KPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALD 358
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF K+V W ++I A+HG G +AL L M ++ + +TF+GLL AC HAGL
Sbjct: 359 VFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGL 418
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V+EG LF M + + + EHYGCMVDLLGRA+LL +A +LI++M P I G+LL
Sbjct: 419 VEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLL 478
Query: 381 SACVIHQDLEIGDRVAKMVCA-KSNYLSDGELMMFANLYASCGQWEE 426
+AC +H DLE+G AK + N+ G ++ +N+YA G W +
Sbjct: 479 AACRMHGDLELGTFAAKKILELDPNH--GGAQVLLSNIYAEYGNWND 523
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 308 FIG--LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
F+G L+ A + G V++ +F M R L +G M+D +AR + A+ L
Sbjct: 105 FVGTALVRAYAACGRVEDARRVFDGMPD-----RDLVAWGVMLDCYCQARNYEEALLLFH 159
Query: 366 AMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASC 421
+M P + I+ +LS C ++L G + + S+ L D ++ N+YASC
Sbjct: 160 SMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLV-SDTLIDAQVSCALMNMYASC 218
Query: 422 GQWEEANRWRNMMNDTGIV 440
E A + N +++ IV
Sbjct: 219 ADMEMAEKLYNRVSEKEIV 237
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 223/356 (62%), Gaps = 7/356 (1%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++S YA+ + AR +FD++ +D +N+L+ AY G ++ A ++F++M +NV++W
Sbjct: 128 LVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSW 187
Query: 173 NTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
MV+GY ++ + E V+ F EM +AG V+P+ LTV+SVL ACA +G++E G ++ YA
Sbjct: 188 TAMVSGYAQNGRHEEAVETFLEMWERAG-VQPNELTVSSVLPACAAVGAMELGRKVEEYA 246
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAA 289
GL N + AL++MY+KCGSI Q+ +VF + +D+ WN+MI+ A+HG A
Sbjct: 247 RGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREA 306
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L L ++ + VK D ITF+G++ AC+H GLV EG F ME +F + ++EHYGCMVD
Sbjct: 307 LALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVD 366
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSD 408
LLGRA LL + LI +MP EP I GALL AC H ++E+ + + K++ + +
Sbjct: 367 LLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAMDKLIHLEPQ--NT 424
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
L++ +N+YAS G+W+ + ++ + K+AG S IE++G+ HKFL H
Sbjct: 425 ANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFIELDGTMHKFLVEDKSH 480
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 136/298 (45%), Gaps = 47/298 (15%)
Query: 33 HGQTIKTGF--CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
H IK G ++ +AL+ Y + + +A KVF+++ +D +N++L A+A G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167
Query: 91 QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF-----------------DKV 133
+D A KL + MP ++V S+ M+SGYA+ G+ A F +
Sbjct: 168 LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVL 227
Query: 134 PA-----------------------KDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNV 169
PA ++V N+L+ Y+ G + +A ++F+ + +++
Sbjct: 228 PACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDL 287
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+WN+M+ + L+ E + LF +++ VKPD +T V+ AC + G + G ++
Sbjct: 288 CSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEG-KLFFD 346
Query: 230 ATDNGLASNPHATT--ALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
+ + + P ++D+ + G + +S + V+ D W A++ + HG
Sbjct: 347 SMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHG 404
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 43/277 (15%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
+ GV + + +L A + + +G + G +VYV ALL+MY I
Sbjct: 212 ERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSI 271
Query: 62 DDAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A++VF+ + ++D+ +WNSM+ AFA G A+ L + + ++G
Sbjct: 272 RQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALF----------YKLRMAGV--- 318
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
D +++ +ILA T+ G + + F M L + + M
Sbjct: 319 --------------KPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCM 364
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R+ L IE L M V+PD + ++L AC+ G++E A D +
Sbjct: 365 VDLLGRAGLLIESYSLIASMP---VEPDAVIWGALLGACSFHGNVELAE----LAMDKLI 417
Query: 236 ASNPHATTALI---DMYAKCGSIEQSLEVFYKSQVKD 269
P T L+ ++YA G + +V+ + KD
Sbjct: 418 HLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKD 454
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 44/196 (22%)
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+S+P ++AL+ YAK + ++ +VF + +D +NA++ A G +A KL E
Sbjct: 119 SSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEE 178
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M D V +++ ++S + G +E E F M + GV
Sbjct: 179 MPDRNV----VSWTAMVSGYAQNGRHEEAVETFLEMWERAGV------------------ 216
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK----SNYLSDGEL 411
+P E + ++L AC +E+G +V + K + Y+++ L
Sbjct: 217 --------------QPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALL 262
Query: 412 MMFANLYASCGQWEEA 427
M Y+ CG +A
Sbjct: 263 EM----YSKCGSIRQA 274
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/470 (31%), Positives = 259/470 (55%), Gaps = 14/470 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ELG ++ +F +++ + L + G +H + I+ +V +AL+ MYG C
Sbjct: 198 MKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGC 257
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD------VTSFNIMI 114
++ A +VFEK+P K+ I WN+M+ ++ G ++L LM + D + + +I
Sbjct: 258 LEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIEL--LMRMNDEGTKPTLMTLTSII 315
Query: 115 SGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+R ++ ++I + D+ SLI Y G + A +F+ + V+
Sbjct: 316 YASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVV 375
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN M++G++ +I+ + ++D MK +VKPD LT +S LSAC+ L +L+ G +H
Sbjct: 376 SWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCI 435
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
++ L +N AL+DMYAKCG ++++ ++F++ +D+ W +MI HG AL
Sbjct: 436 INHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEAL 495
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+L EM V+AD +TF+ +LSACSHAGLV EG F+ M + + +EHY C++DL
Sbjct: 496 RLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDL 555
Query: 351 LGRARLLDRAIELIEAMPFEPTE-SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LGRA L A E+++ ++ +L L SAC++H + +G ++ KM+ + +
Sbjct: 556 LGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKML-IEVDPDDPS 614
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
++ +N+YAS +W+E + R M + G+ K+ G S IE+N H F A
Sbjct: 615 TYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIHPFFA 664
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 180/375 (48%), Gaps = 17/375 (4%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D Y++P++LKA G L G +H +KTG V+V ++L+ MY DA
Sbjct: 102 VRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAI 161
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIG 121
K+F++ P++D+ WN+++ + G+ + A+K D M + +F +++S R+
Sbjct: 162 KLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLL 221
Query: 122 KIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
+ + + ++ + D ++L+ Y G +E A E+F+K+ KN ITWN M+T
Sbjct: 222 NLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMIT 281
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY ++L M KP +T+TS++ A + L G IH Y N +
Sbjct: 282 GYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDV 341
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ +LID Y KCG + + +F +V WN MI G + G AL + M
Sbjct: 342 DIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMK 401
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH----YGCMVDLLGR 353
+ VK D +TF LSACS + +G EL + + KLE G ++D+ +
Sbjct: 402 EHHVKPDALTFSSTLSACSQLAALDKGRELHYCI-----INHKLEANEIVMGALLDMYAK 456
Query: 354 ARLLDRAIELIEAMP 368
+D A +L +P
Sbjct: 457 CGDVDEARKLFHQLP 471
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/471 (23%), Positives = 205/471 (43%), Gaps = 49/471 (10%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP-EKDIIAWNSMLDAFA 87
G ++H + GF ++ + +L+ Y S A VF+ D+ WN++L A+
Sbjct: 22 GKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTNDCPLDVSLWNALLSAYT 81
Query: 88 SCGQMDHAMKLIDLMPLK-----DVTSFNIMISGYARIGKIHSARYIFDKVPAK----DV 138
+ + A++L D + D ++ +++ +G++ R I + + DV
Sbjct: 82 NNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDV 141
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+SL+ Y + A ++F + ++V WN +++ Y + + FD+MK
Sbjct: 142 FVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKEL 201
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+P+ +T T V+S+C L +LE G +H + + + +AL+DMY KCG +E +
Sbjct: 202 GFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMA 261
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
EVF K K+ WNAMI G +L G + ++LL MND K +T ++ A S +
Sbjct: 262 KEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRS 321
Query: 319 -----GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF---- 369
G G L +R++ D + L + + A + R I E + +
Sbjct: 322 VQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMI 381
Query: 370 ------------------------EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
+P + LSAC L+ G + C ++
Sbjct: 382 SGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELH--YCIINHK 439
Query: 406 LSDGELMMFA--NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSY 454
L E++M A ++YA CG +EA + + + +V + +S+I GS+
Sbjct: 440 LEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLV--SWTSMIFAYGSH 488
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 164/504 (32%), Positives = 255/504 (50%), Gaps = 46/504 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ G+ N F + KA G + +H I+ G ++ AL+ YG +C
Sbjct: 123 LRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKC 182
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCG----------QM------DHAMKLIDLMP- 103
++ A +VF+ + KD+++W SM + +CG +M +++ L ++P
Sbjct: 183 VEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPA 242
Query: 104 ---LKDVTS------FNI-------------MISGYARIGKIHSARYIFDKVPAKDVVSW 141
LKD+ S F + ++S YAR + AR +FD +P +DVVSW
Sbjct: 243 CSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSW 302
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNV----ITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
N ++ AY E +K +F +M K V TWN ++ G + + + V++ +M+
Sbjct: 303 NGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQN 362
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KP+ +T++S L AC+ L SL G +H Y + L + TAL+ MYAKCG +
Sbjct: 363 LGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNL 422
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
S VF KDV WN MI+ A+HG G L L M S +K + +TF G+LS CSH
Sbjct: 423 SRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSH 482
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+ LV+EG ++F+ M +D V HY CMVD+ RA L A E I+ MP EPT S G
Sbjct: 483 SRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWG 542
Query: 378 ALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
ALL AC +++++E+ A K+ + N + G + N+ + W EA+ R +M +
Sbjct: 543 ALLGACRVYKNVELAKISANKLFEIEPN--NPGNYVSLFNILVTAKLWSEASEARILMKE 600
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAG 460
GI KT G S ++V H F+ G
Sbjct: 601 RGITKTPGCSWLQVGDRVHTFVVG 624
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 50/383 (13%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI--- 120
A ++F+ +P+ D ++++ AF + G + A++L + + + N + A+
Sbjct: 85 AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGA 144
Query: 121 -GKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
G + + D D N+LI AY +E A +F ++VK+V++W +M
Sbjct: 145 SGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSM 204
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ Y+ L + +F EM VKP+ +T++S+L AC+ L L++G IH +A +G+
Sbjct: 205 SSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGM 264
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
N +AL+ +YA+C S++Q+ VF +DV WN ++ + L L +
Sbjct: 265 IENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQ 324
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M+ V+AD+ T+ ++ C G ++ E+ RK+++ G
Sbjct: 325 MSSKGVEADEATWNAVIGGCMENGQTEKAVEML----------RKMQNLG---------- 364
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
F+P + + + L AC I + L +G V C + G+L
Sbjct: 365 -------------FKPNQITISSFLPACSILESLRMGKEVH---CYVFRHWLIGDLTTMT 408
Query: 416 NL---YASCGQWEEANRWRNMMN 435
L YA CG + N RN+ +
Sbjct: 409 ALVYMYAKCG---DLNLSRNVFD 428
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 121/293 (41%), Gaps = 8/293 (2%)
Query: 91 QMDHAMKLI----DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
++DH+ +LI L P +T S + ++ A + +P+ + L+
Sbjct: 18 EIDHSRELIIFGFVLPPFFSITHSTQSSSIWKQLTSTKVAPSVPTNIPSHLGLR---LLK 74
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
A N G+ +A ++F + + T +T+++ + L E + L+ ++A +KP
Sbjct: 75 AALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSV 134
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+V AC G +H A G+ S+ ALI Y KC +E + VF
Sbjct: 135 FLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLV 194
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
VKDV W +M G L + EM + VK + +T +L ACS ++ G
Sbjct: 195 VKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRA 254
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
+ + G+ + +V L R + +A + + MP S G L
Sbjct: 255 IHGFAVRH-GMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVL 306
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/472 (33%), Positives = 257/472 (54%), Gaps = 11/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+EL + D + ++ A +L +G LH ++T + G++ V +L++MY S+
Sbjct: 227 MRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGH 286
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
+A VF M +D+++W +++ D A++ M + D + ++S
Sbjct: 287 WKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSA 346
Query: 117 YARIGKIHSARYIFDKVPAKD----VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G++ + + VV NSLI Y+ +EKA E+F ++ K+VI+W
Sbjct: 347 CASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISW 406
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ G + E + F +M + KP+ +T+ S LSACA +G+L G IH +A
Sbjct: 407 TSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALK 465
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G+ + A++D+Y +CG + +L F ++ KDV WN ++ G A G G ++L
Sbjct: 466 AGMGFDGFLPNAILDLYVRCGRMRTALNQFNLNE-KDVGAWNILLTGYAQKGKGAMVMEL 524
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M +S + DD+TFI LL ACS +G+V EG E F RM+ ++ +T L+HY C+VDLLG
Sbjct: 525 FKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLG 584
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L+ A E IE MP +P +I GALL+AC IH+ + +G+ A+ + K + S G +
Sbjct: 585 RAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHI-FKQDAESIGYYI 643
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ NLYA G+W+E + R M + G++ G S +EV G H FL+G H
Sbjct: 644 LLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFH 695
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 173/334 (51%), Gaps = 15/334 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D Y+FP +L++ G +H ++ F V V AL+ MY + A
Sbjct: 130 GIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSA 189
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSFNIMI 114
+F+KMP +D I+WN+M+ + + ++L DLM + V S ++
Sbjct: 190 RMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELL 249
Query: 115 SGYARIG-KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
G R+G ++HS Y+ ++ +NSLI Y + G ++A +F M ++V++W
Sbjct: 250 -GDERLGTQLHS--YVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWT 306
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
T+++G + + L + ++ + M+ PD +T+ SVLSACA+LG L+ G ++H A
Sbjct: 307 TIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERT 366
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
G +LIDMY+KC IE++LE+F++ KDV W ++I GL ++ + AL
Sbjct: 367 GHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFF 426
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+M K + +T I LSAC+ G + G E+
Sbjct: 427 RKMILKS-KPNSVTLISALSACARVGALMCGKEI 459
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 17/336 (5%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V + ALL M+ + +A+ VF +M E+D+ +WN ++ + G D A+ L +
Sbjct: 69 VRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILW 128
Query: 105 ----KDVTSFNIMISGYA--------RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152
DV +F ++ A R H R+ FD DV N+LI Y G
Sbjct: 129 AGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDM----DVDVVNALITMYVKCG 184
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
++ A +F KM ++ I+WN M++GY + +E ++LF M+ ++ PD +T+TSV+S
Sbjct: 185 DVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVIS 244
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
AC LG G ++H Y N +LI MY G +++ VF + +DV
Sbjct: 245 ACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVS 304
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
W +I G + AL+ M + D++T +LSAC+ G + G +L E
Sbjct: 305 WTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAE 364
Query: 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ G + ++D+ + + +++A+E+ +P
Sbjct: 365 RT-GHILYVVVANSLIDMYSKCKRIEKALEIFHQIP 399
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 151/381 (39%), Gaps = 74/381 (19%)
Query: 98 LIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157
L L+ L V N ++S + R G + +A +F ++ +D+ SWN L+ YT AG ++A
Sbjct: 60 LSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEA 119
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
++ ++L W ++PD T SVL +CA
Sbjct: 120 LCLYHRIL------W-------------------------AGIRPDVYTFPSVLRSCAGA 148
Query: 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMI 277
L G +H + + ALI MY KCG + + +F K +D WNAMI
Sbjct: 149 MDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMI 208
Query: 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG------------------ 319
G + L+L M + + D +T ++SAC G
Sbjct: 209 SGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYD 268
Query: 320 --------LVQ---------EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
L+Q E +FS ME V+ GC+ +LL D+A+E
Sbjct: 269 GNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLP-----DKALE 323
Query: 363 LIEAMPFE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
+ M P E + ++LSAC L++G ++ ++ + L ++Y+
Sbjct: 324 TYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYS 383
Query: 420 SCGQWEEANRWRNMMNDTGIV 440
C + E+A + + D ++
Sbjct: 384 KCKRIEKALEIFHQIPDKDVI 404
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 251/468 (53%), Gaps = 9/468 (1%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D+ + +L A + +G+ + +K GF YV T L+ ++ +D A
Sbjct: 199 GVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTA 258
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLID--LMPLKDVTSFNI--MISGYARI 120
+F + + D++++N+++ F+ G+ + A+K L+ + V+S + +I +
Sbjct: 259 RLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPF 318
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
G +H A I + S+ A Y+ E++ A ++F + K V WN M+
Sbjct: 319 GHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMI 378
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+GY +S L + LF EM P+ +T+TS+LSACA LG+L G +H L
Sbjct: 379 SGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLE 438
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
N + +TALIDMYAKCG+I ++ ++F + K+ WN MI G LHGYG ALKL EM
Sbjct: 439 QNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEM 498
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ +TF+ +L ACSHAGLV+EG E+F M + + EHY CMVD+LGRA
Sbjct: 499 LHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQ 558
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L++A+E I MP EP ++ G LL AC+IH+D + RVA + + + G ++ +N
Sbjct: 559 LEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLA-RVASERLFELDPGNVGYYVLLSN 617
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+Y+ + +A R + + KT G ++IEVNG+ H F+ G H
Sbjct: 618 IYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSH 665
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 191/447 (42%), Gaps = 40/447 (8%)
Query: 33 HGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA----- 87
H Q I+ G+ + T L + + A +F +P+ DI +N ++ F+
Sbjct: 28 HAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDA 87
Query: 88 -SCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
S H +K L P +F I S +G A + D + V+ ++L+
Sbjct: 88 SSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVA-SALVD 146
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y + A ++F KM ++ + WNTM+TG +R+ Y + V +F +M A V+ D T
Sbjct: 147 LYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTT 206
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
V +VL A A + ++ G I A G + + T LI +++KC ++ + +F +
Sbjct: 207 VATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIR 266
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC- 325
D+ +NA+I G + +G A+K E+ S + T +GL+ S G + C
Sbjct: 267 KPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACC 326
Query: 326 ---------------------ELFSRMEK--------DFGVTRKLEHYGCMVDLLGRARL 356
++SR+ + D + + + M+ ++ L
Sbjct: 327 IQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGL 386
Query: 357 LDRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
+ AI L + M F P + ++LSAC L G V +++ +K+ +
Sbjct: 387 TEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTA 446
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIV 440
++YA CG EA++ ++ ++ V
Sbjct: 447 LIDMYAKCGNISEASQLFDLTSEKNTV 473
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 152/364 (41%), Gaps = 75/364 (20%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ + DN+++ + A+ +G+ LH + GF +++V +AL+ +Y
Sbjct: 97 LKNTTLSPDNFTYAFAISAS---PDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSR 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSML-----------------DAFASCGQMDHAMKLIDLMP 103
+ A KVF+KMP++D + WN+M+ D A ++D L
Sbjct: 154 VAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPA 213
Query: 104 LKDVTSFNI----------------------MISGYARIGKIHSARYIFDKVPAKDVVSW 141
+ ++ + +IS +++ + +AR +F + D+VS+
Sbjct: 214 VAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSY 273
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
N+LI ++ GE E A + F+++LV ++ +TMV
Sbjct: 274 NALISGFSCNGETECAVKYFRELLVSGQRVSSSTMV------------------------ 309
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
++ + G L I + +G P +TAL +Y++ I+ + +
Sbjct: 310 --------GLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F +S K V WNAMI G A G A+ L EM + + +T +LSAC+ G
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421
Query: 321 VQEG 324
+ G
Sbjct: 422 LSFG 425
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 215/355 (60%), Gaps = 4/355 (1%)
Query: 113 MISGYARIGKIHSARYIFDKVPA-KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+++ YAR G + +R +FD++P D + N+L+ AY G ++ A +F M +NVI+
Sbjct: 125 LVASYARSGHLAESRRVFDELPPHSDAAARNALLSAYARCGRVDDAESLFAGMPDRNVIS 184
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAG-NVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
W MV+GY ++ + E V F EM G V+P+ +TV+SVL ACA +G+L G ++ YA
Sbjct: 185 WTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAVGALALGRKVERYA 244
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAA 289
G+ +N + AL++MYAKCGSI ++ VF + +D+ WN+MI+ A+HG
Sbjct: 245 RGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRGIGKQRDLCSWNSMIMAFAVHGLWREV 304
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L L ++ + K D ITF+G++ AC+H GLV EG LF+ M ++FG+ ++EHYGCMVD
Sbjct: 305 LGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMREEFGLKPRIEHYGCMVD 364
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA LL A LI +MP EP I GALL AC H +LE+ + VA + +
Sbjct: 365 LLGRAGLLKEADSLIASMPMEPDAVIWGALLGACSFHGNLELAE-VAVEKLMRLEPQNTA 423
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
L++ +N+YAS G+W+ + ++ + K+AG S IE++G HKFL H
Sbjct: 424 NLVILSNIYASHGKWDGVAQVWKLLKEKDHKKSAGYSFIELDGRMHKFLVEDKSH 478
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 129/286 (45%), Gaps = 44/286 (15%)
Query: 43 GHVYVQTALLKMYGSLRCIDDAFKVFEKMP-EKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
G Y+ +AL+ Y + ++ +VF+++P D A N++L A+A CG++D A L
Sbjct: 117 GDPYLASALVASYARSGHLAESRRVFDELPPHSDAAARNALLSAYARCGRVDDAESLFAG 176
Query: 102 MPLKDVTSFNIMISGYARIGKIHSA----------------------------------- 126
MP ++V S+ M+SGYA+ G+ A
Sbjct: 177 MPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAVGALAL 236
Query: 127 -----RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVITWNTMVTGYL 180
RY + +V N+L+ Y G + +A +F+ + +++ +WN+M+ +
Sbjct: 237 GRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRGIGKQRDLCSWNSMIMAFA 296
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNP 239
L+ EV+ LF +++ KPD +T V+ AC + G ++ G + + + GL
Sbjct: 297 VHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMREEFGLKPRI 356
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
++D+ + G ++++ + ++ D W A++ + HG
Sbjct: 357 EHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGACSFHG 402
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 113/274 (41%), Gaps = 43/274 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + + +L A + + +G + G +VYV AL++MY I A
Sbjct: 213 GVRPNEVTVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRA 272
Query: 65 FKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
+ VF + ++D+ +WNSM+ AFA G ++V +G
Sbjct: 273 WMVFRGIGKQRDLCSWNSMIMAFAVHGLW------------REV------------LGLF 308
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTMVTG 178
H R K D +++ +ILA T+ G +++ +F M L + + MV
Sbjct: 309 HKLRMTGAK---PDGITFVGVILACTHGGLVDEGKLLFNSMREEFGLKPRIEHYGCMVDL 365
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
R+ L E L M ++PD + ++L AC+ G+LE A + +
Sbjct: 366 LGRAGLLKEADSLIASMP---MEPDAVIWGALLGACSFHGNLELAE----VAVEKLMRLE 418
Query: 239 PHATTALI---DMYAKCGSIEQSLEVFYKSQVKD 269
P T L+ ++YA G + +V+ + KD
Sbjct: 419 PQNTANLVILSNIYASHGKWDGVAQVWKLLKEKD 452
>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
Length = 851
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 146/416 (35%), Positives = 228/416 (54%), Gaps = 18/416 (4%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
+A ++F+++PE D ++N ML + + A D MP KD S+N MI+GYAR G+
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ AR +F + K+ VSWN++I Y G++EKA FK V+ V+ W M+TGY+++
Sbjct: 171 MEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA 230
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH-- 240
+ +F +M V + +T +++S E G ++ + G+ N
Sbjct: 231 KKVELAEAMFKDM---TVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGL 287
Query: 241 -------ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
T+LI MY KCG + + ++F + KDV WNAMI G A HG AL L
Sbjct: 288 SSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLF 347
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
EM D+ ++ D ITF+ +L AC+HAGLV G F M +D+ V + +HY CMVDLLGR
Sbjct: 348 REMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGR 407
Query: 354 ARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
A L+ A++LI +MPF P ++ G LL AC +H+++E+ + A+ + ++ + G + +
Sbjct: 408 AGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQL 467
Query: 414 FANLYASCGQWEEANRWRNMMNDTGI-----VKTAGSSVIEVNGSYHKFLAGGIGH 464
AN+YAS +WE+ R R M ++ + VK G S IE+ H F + H
Sbjct: 468 -ANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIH 522
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 16/229 (6%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT-NAGEMEKAGEMFKKM 164
+ N +I+ R G I A +F + AK+ ++WNSL++ + + M +A ++F ++
Sbjct: 60 QIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEI 119
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+ ++N M++ Y+R+ + + FD M D + ++++ A G +E A
Sbjct: 120 PEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK----DAASWNTMITGYARRGEMEK-A 174
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
R Y+ + N + A+I Y +CG +E++ F + V+ V W AMI G
Sbjct: 175 RELFYSM---MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMIT-----G 226
Query: 285 YGYAALKLLGE--MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
Y A L E D V + +T+ ++S ++G +LF M
Sbjct: 227 YMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAM 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 97/248 (39%), Gaps = 20/248 (8%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR-SQLYIEVVDLFDEMKAGNV 200
N +I +G+++ A +F M KN ITWN+++ G + +E LFDE+
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP---- 120
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD + +LS + E D + + +I YA+ G +E++ E
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFF----DRMPFKDAASWNTMITGYARRGEMEKARE 176
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+FY K+ WNAMI G G A V A G + A
Sbjct: 177 LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA------ 230
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILG 377
+ EL M KD V + L + M+ + ++L AM E P S L
Sbjct: 231 --KKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLS 288
Query: 378 ALLSACVI 385
+ L C +
Sbjct: 289 SALLGCTL 296
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPL 104
T+L+ MY + DA+K+FE M +KD++AWN+M+ +A G D A+ ++ID
Sbjct: 297 TSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIR 356
Query: 105 KDVTSFNIMI-----SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGE 159
D +F ++ +G IG + + D + ++ AG++E+A +
Sbjct: 357 PDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALK 416
Query: 160 MFKKMLVK 167
+ + M +
Sbjct: 417 LIRSMPFR 424
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 152/474 (32%), Positives = 254/474 (53%), Gaps = 17/474 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI--- 61
G D ++ ++ A + +G H +K+G V V +L+ MY +C+
Sbjct: 140 GYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYA--KCVADG 197
Query: 62 --DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDH-AMKLIDLMPLKDVT----SFNIMI 114
DDA KVF++MP ++++W +++ + G D A++L M V +F+ ++
Sbjct: 198 SVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVL 257
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A + I ++ V + S NSLI Y+ G ME A + F + KN++
Sbjct: 258 KACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLV 317
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
++NT+V Y +S E +LF+E++ + T S+LS +++G++ G +IH
Sbjct: 318 SYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRI 377
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+G SN H ALI MY++CG+IE + +VF + +V W +MI G A HG+ AL
Sbjct: 378 LKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRAL 437
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ +M ++ V +++T+I +LSACSH GL+ EG + F M+ + G+ ++EHY C+VDL
Sbjct: 438 ETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDL 497
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGR+ L+ A+EL+ +MPF+ +L L AC +H ++++G A+M+ + +
Sbjct: 498 LGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPH-DPAA 556
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +NL+AS GQWEE R M + + K AG S IEV HKF G H
Sbjct: 557 YILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSH 610
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 185/384 (48%), Gaps = 21/384 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMY---- 55
M E G + + Y F + +A + +G ++ G +KTG F V V AL+ M+
Sbjct: 33 MLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGN 92
Query: 56 GSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFN 111
G L + A+KVF++MP+++++ W M+ F G A+ L M L D + +
Sbjct: 93 GDL---ESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLS 149
Query: 112 IMISGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNA---GEMEKAGEMFKKM 164
++S A +G + R V DV SL+ Y G ++ A ++F +M
Sbjct: 150 GVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRM 209
Query: 165 LVKNVITWNTMVTGYLRS-QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
V NV++W ++TGY++S E ++LF EM G VKP++ T +SVL ACANL + G
Sbjct: 210 PVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLG 269
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+++ LAS +LI MY++CG++E + + F K++ +N ++ A
Sbjct: 270 EQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKS 329
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
A +L E+ + + TF LLS S G + +G ++ SR+ K G L
Sbjct: 330 LNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSNLHI 388
Query: 344 YGCMVDLLGRARLLDRAIELIEAM 367
++ + R ++ A ++ M
Sbjct: 389 CNALISMYSRCGNIEAAFQVFNEM 412
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 110/274 (40%), Gaps = 76/274 (27%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLV-------------------KNVITWNTMV 176
+D+VSW++LI Y N + +A F ML K I+ ++
Sbjct: 5 RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64
Query: 177 TGYLRSQLYIE--------VVDL--------------FDEMKAGNV-------------- 200
G+L Y E ++D+ FD M NV
Sbjct: 65 FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124
Query: 201 -----------------KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
PD T++ V+SACA +G L G + H +GL +
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGC 184
Query: 244 ALIDMYAKC---GSIEQSLEVFYKSQVKDVFCWNAMILGLALH-GYGYAALKLLGEMNDS 299
+L+DMYAKC GS++ + +VF + V +V W A+I G G A++L EM
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQG 244
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
VK + TF +L AC++ + G ++++ + K
Sbjct: 245 QVKPNHFTFSSVLKACANLSDIWLGEQVYALVVK 278
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 223/356 (62%), Gaps = 7/356 (1%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++S YA+ + AR +FD++ +D +N+L+ AY G ++ A ++F++M +NV++W
Sbjct: 128 LVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSW 187
Query: 173 NTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
MV+GY ++ + E V+ F EM +AG V+P+ LTV+SVL ACA +G++E G ++ YA
Sbjct: 188 TAMVSGYAQNGRHEEAVETFLEMWERAG-VQPNELTVSSVLPACAAVGAMELGRKVEEYA 246
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAA 289
GL N + AL++MY+KCGSI Q+ +VF + +D+ WN+MI+ A+HG A
Sbjct: 247 RGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREA 306
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L L ++ + VK D ITF+G++ AC+H GLV EG F ME +F + ++EHYGCMVD
Sbjct: 307 LALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVD 366
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSD 408
LLGRA LL + LI +MP EP I GALL AC H ++E+ + + K++ + +
Sbjct: 367 LLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAMDKLIHLEPQ--NT 424
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
L++ +N+YAS G+W+ + ++ + K+AG S IE++G+ HKFL H
Sbjct: 425 ANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFIELDGTMHKFLVEDKSH 480
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 136/298 (45%), Gaps = 47/298 (15%)
Query: 33 HGQTIKTGF--CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
H IK G ++ +AL+ Y + + +A KVF+++ +D +N++L A+A G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167
Query: 91 QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF-----------------DKV 133
+D A KL + MP ++V S+ M+SGYA+ G+ A F +
Sbjct: 168 LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVL 227
Query: 134 PA-----------------------KDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNV 169
PA ++V N+L+ Y+ G + +A ++F+ + +++
Sbjct: 228 PACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDL 287
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+WN+M+ + L+ E + LF +++ VKPD +T V+ AC + G + G ++
Sbjct: 288 CSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEG-KLFFD 346
Query: 230 ATDNGLASNPHATT--ALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
+ + + P ++D+ + G + +S + V+ D W A++ + HG
Sbjct: 347 SMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHG 404
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 43/277 (15%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
+ GV + + +L A + + +G + G +VYV ALL+MY I
Sbjct: 212 ERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSI 271
Query: 62 DDAFKVFEKM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A++VF+ + ++D+ +WNSM+ AFA G A+ L + + ++G
Sbjct: 272 RQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALF----------YKLRMAGV--- 318
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
D +++ +ILA T+ G + + F M L + + M
Sbjct: 319 --------------KPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCM 364
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R+ L IE L M V+PD + ++L AC+ G++E A D +
Sbjct: 365 VDLLGRAGLLIESYSLIASMP---VEPDAVIWGALLGACSFHGNVELAE----LAMDKLI 417
Query: 236 ASNPHATTALI---DMYAKCGSIEQSLEVFYKSQVKD 269
P T L+ ++YA G + +V+ + KD
Sbjct: 418 HLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKD 454
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 44/196 (22%)
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+S+P ++AL+ YAK + ++ +VF + +D +NA++ A G +A KL E
Sbjct: 119 SSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEE 178
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M D V +++ ++S + G +E E F M + GV
Sbjct: 179 MPDRNV----VSWTAMVSGYAQNGRHEEAVETFLEMWERAGV------------------ 216
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK----SNYLSDGEL 411
+P E + ++L AC +E+G +V + K + Y+++ L
Sbjct: 217 --------------QPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALL 262
Query: 412 MMFANLYASCGQWEEA 427
M Y+ CG +A
Sbjct: 263 EM----YSKCGSIRQA 274
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 157/504 (31%), Positives = 261/504 (51%), Gaps = 56/504 (11%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI--- 61
G++ D+ FP +LK+ +L +G LHG I+ G +Y AL+ MY LR +
Sbjct: 101 GLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEES 160
Query: 62 -----------------------------DDAFKVFEKMPEKDIIAWNSMLDAFASCGQM 92
D K+FE MPEKD+++WN+++ A G
Sbjct: 161 GRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLY 220
Query: 93 DHAMKLIDLMPLKDVTSFNIMISGY----------ARIGKIH--SARYIFDKVPAKDVVS 140
+ +++I M ++ + +S +R +IH S R D D+
Sbjct: 221 EETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDA----DIYV 276
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+SLI Y + + +F + ++ I+WN+++ G +++ L+ E + F +M +
Sbjct: 277 ASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKI 336
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KP + +S++ ACA+L +L G ++H Y T NG N ++L+DMYAKCG+I + +
Sbjct: 337 KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQ 396
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F + +++D+ W AMI+G ALHG A++L +M +KA +L+ACSH GL
Sbjct: 397 IFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKA-------VLTACSHGGL 449
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V E + F+ M +DFG+ +EHY + DLLGRA L+ A + I M PT SI LL
Sbjct: 450 VDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLL 509
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC +H+++++ ++VA + + + + G ++ AN+Y++ +W+EA +WR M GI
Sbjct: 510 SACRVHKNIDMAEKVANRIL-EVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIR 568
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
KT S IEV + F+AG H
Sbjct: 569 KTPACSWIEVKNKVYAFMAGDESH 592
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 32/212 (15%)
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y++ + + +F + + W +++ Y L + + F M A + PD+
Sbjct: 50 YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS--------- 258
SVL +CA L L G +H Y GL + + AL++MY+K +E+S
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169
Query: 259 -----------------------LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
++F KD+ WN +I G A +G L+++ E
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIRE 229
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
M + +K D T +L + + G E+
Sbjct: 230 MGGANLKPDSFTLSSVLPLIAENVDISRGKEI 261
>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Brachypodium distachyon]
Length = 676
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 143/428 (33%), Positives = 236/428 (55%), Gaps = 16/428 (3%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPE--------------KDIIAWNSMLDAFASCGQMDHAM 96
L+ YG + + DA ++F+ +P +++++WNSM+ + G + A
Sbjct: 230 LIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAR 289
Query: 97 KLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
++ + MP KD+ S+N MI+GY ++ + A +F ++P D+VSWN +I +T G++E
Sbjct: 290 EIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEH 349
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A F +M + I+WNTM++GY ++ Y ++LF +M PD T +SVL+ACA+
Sbjct: 350 ARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACAS 409
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L L GA++H + + + AL+ MY++ G++ + +F + KD+ WNA+
Sbjct: 410 LPMLRLGAQLHQL-IEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNAL 468
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I G HG AL+L +M + V ITFI LLSAC +AGLV EG +F M ++
Sbjct: 469 IGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEYS 528
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA 396
+ ++EHY +V+L+GR LD A+E+I +MP P S+ GA L AC ++ E+ +A
Sbjct: 529 IAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACTAKKN-ELLAHMA 587
Query: 397 KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHK 456
+K + S ++ NL+A G+W A+ R M GI K G S I+++ H
Sbjct: 588 AKALSKIDPESSAPYVLIHNLHAHEGRWGSASVVREEMEQQGIHKHPGYSWIDLHDKVHV 647
Query: 457 FLAGGIGH 464
F++G H
Sbjct: 648 FISGDTSH 655
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 152/304 (50%), Gaps = 27/304 (8%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF 110
LL Y + +A K+F++MP++++ +WN+M+ F S GQ++ A+ + D MP+KD S
Sbjct: 132 LLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMPVKDSASL 191
Query: 111 NIMISGYARIGKIHSARYIFDK---VPAKD--VVSWNSLILAYTNAGEMEKAGEMFK--- 162
++SG+ + G++H A + K V D V ++N+LI AY G + A +F
Sbjct: 192 GTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFDMIP 251
Query: 163 -----------KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
++ +NV++WN+M+T Y+R+ ++F+EM D ++ +++
Sbjct: 252 RGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMP----DKDLVSWNTMI 307
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
+ + +E ++ D + S +I + + G +E + F + +
Sbjct: 308 AGYTKVSDMEEAEKLFWEMPDPDIVS----WNLIIRGFTQKGDVEHARGFFDRMPERGTI 363
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN MI G +G+ A++L +M ++ D TF +L+AC+ +++ G +L +
Sbjct: 364 SWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLI 423
Query: 332 EKDF 335
EK F
Sbjct: 424 EKSF 427
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 175/390 (44%), Gaps = 61/390 (15%)
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR-IGKIH-- 124
F+ +P + ++ WNS L A A + A MP++D S+N +++ Y+R + H
Sbjct: 53 FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLA 112
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+AR +FD++P +D V+WN+L+ AY G M +A ++F +M +NV +WNTMVTG+ +
Sbjct: 113 AARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQ 172
Query: 185 YIEVVDLFDEM----------------------KAGNVKPDYLTVT----------SVLS 212
+ +D+FD M +A + L VT ++++
Sbjct: 173 VNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIA 232
Query: 213 ACANLGSLETGARI--------HVYATDNG--LASNPHATTALIDMYAKCGSIEQSLEVF 262
A +G + R+ + T+N A N + +++ Y + G + + E+F
Sbjct: 233 AYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIF 292
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ KD+ WN MI G A KL EM D D +++ ++ + G V+
Sbjct: 293 NEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDP----DIVSWNLIIRGFTQKGDVE 348
Query: 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE----PTESILGA 378
F RM + R + M+ + D AIEL M E P +
Sbjct: 349 HARGFFDRMPE-----RGTISWNTMISGYEQNGHYDGAIELFTKM-LEAGGTPDRHTFSS 402
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
+L+AC L +G ++ +++ + ++L D
Sbjct: 403 VLAACASLPMLRLGAQLHQLI--EKSFLPD 430
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G D ++F +L A L +G LH Q I+ F AL+ MY
Sbjct: 388 MLEAGGTPDRHTFSSVLAACASLPMLRLGAQLH-QLIEKSFLPDTATSNALMTMYSRGGA 446
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
+ DA +F++MP+KD+++WN+++ + G A++L + M V +I ++S
Sbjct: 447 LTDAEAIFKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSA 506
Query: 117 YARIGKIHSARYIFD 131
G + +FD
Sbjct: 507 CGNAGLVSEGWMVFD 521
>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14050, mitochondrial; Flags: Precursor
gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 149/474 (31%), Positives = 242/474 (51%), Gaps = 41/474 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF----- 86
LH +K G + L+ +YG A +VF++MP +D IAW S+L A
Sbjct: 25 LHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL 84
Query: 87 -------------------------------ASCGQMDHAMKLIDLMPLKDVTSFNIMIS 115
A+ G +DH ++ + + + ++ S
Sbjct: 85 SGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKS 144
Query: 116 G----YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
YA+ G ++SA+ +FD + K+ +SW +++ Y +G E+A E+F+ + VKN+ +
Sbjct: 145 SLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYS 204
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP-DYLTVTSVLSACANLGSLETGARIHVYA 230
W +++G+++S +E +F EM+ V D L ++S++ ACANL + G ++H
Sbjct: 205 WTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLV 264
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G S + ALIDMYAKC + + ++F + + +DV W ++I+G+A HG AL
Sbjct: 265 IALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKAL 324
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M VK +++TF+GL+ ACSH G V++G ELF M KD+G+ L+HY C++DL
Sbjct: 325 ALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDL 384
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGR+ LLD A LI MPF P E ALLSAC ++G R+A + +
Sbjct: 385 LGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPST 444
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YAS W + + R + + + K G S +EV F AG H
Sbjct: 445 YILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSH 498
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/378 (21%), Positives = 170/378 (44%), Gaps = 47/378 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D++ F L+KA L S G +H I + + V+++L+ MY ++ A
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 160
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
VF+ + K+ I+W +M+ +A G+ + A++L ++P+K++ S+ +ISG+ + GK
Sbjct: 161 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLE 220
Query: 126 ARYIFDKVPAKDVVSWNSLILA-------------------------------------- 147
A +F ++ + V + L+L+
Sbjct: 221 AFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALI 280
Query: 148 --YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y ++ A ++F +M ++V++W +++ G + + + L+D+M + VKP+ +
Sbjct: 281 DMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEV 340
Query: 206 TVTSVLSACANLGSLETGARIHVYAT-DNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T ++ AC+++G +E G + T D G+ + T L+D+ + G ++++ + +
Sbjct: 341 TFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHT 400
Query: 265 SQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI---GLLSACSHAGL 320
D W A++ G G +++ + S D T+I + ++ S G
Sbjct: 401 MPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGK 460
Query: 321 VQEGCELFSRME--KDFG 336
V E ME KD G
Sbjct: 461 VSEARRKLGEMEVRKDPG 478
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P YL L CA +L T +H + G+ L+++Y KCG+ +L+V
Sbjct: 4 PHYL---HQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQV 60
Query: 262 FYKSQVKDVFCWNAMILGLALHGY-GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F + +D W +++ L G + S ++ DD F L+ AC++ G
Sbjct: 61 FDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGS 120
Query: 321 VQEG 324
+ G
Sbjct: 121 IDHG 124
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 147/450 (32%), Positives = 247/450 (54%), Gaps = 17/450 (3%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
FP L +A + G +HG + GF + V+T +L +Y +CI A +VF+
Sbjct: 212 FPALGRAGALRE----GKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDF 267
Query: 73 EKDIIAWNSMLDAFAS------CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
+K+ + W++M+ + G++ M + M + + +++ G AR G +
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMGCARFGDLSGG 327
Query: 127 R----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
R Y D+ N++I Y G + A F ++ +K+++++N++++G + +
Sbjct: 328 RCVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVEN 387
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E LF +MK+ ++PD T+ +L+AC+NL +L G+ H Y NG A N
Sbjct: 388 CRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSIC 447
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
AL+DMY KCG + + VF +D+ WN M+ G +HG G AL L M D+ V
Sbjct: 448 NALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGVH 507
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGCMVDLLGRARLLDRAI 361
D++T + +LSACSH+GLV EG +LF+ M + DF V +L+HY CM DLL RA LD A
Sbjct: 508 PDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLLARAGYLDEAY 567
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
+ + MPFEP +LG LLSAC ++++E+G+ V+K + +S + L++ +N Y++
Sbjct: 568 DFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKM--QSLGETTESLVLLSNTYSAA 625
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
+WE+A + R +G++KT G S ++V+
Sbjct: 626 ERWEDAAKIRMTQKKSGLLKTPGYSWVDVD 655
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 156/338 (46%), Gaps = 17/338 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV +++P +LKA L + G ++H + F +YV TAL+ Y
Sbjct: 94 MLNSGVRPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGE 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-----MIS 115
+D A KVF++MP++DI+AWN+M+ F+ + + L M D S N+ M
Sbjct: 154 LDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFP 213
Query: 116 GYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
R G + + + + D+V ++ Y + + A +F KN +T
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFKKNEVT 273
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV-----LSACANLGSLETGARI 226
W+ M+ GY+ +++ E ++F +M V D VT V L CA G L G +
Sbjct: 274 WSAMIGGYVENEMIKEAGEVFLQML---VNADMAMVTPVAIGLILMGCARFGDLSGGRCV 330
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H YA G + +I YAK GS+ + F + +KD+ +N++I G +
Sbjct: 331 HCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRA 390
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ +L +M S ++ D T +G+L+ACS+ + G
Sbjct: 391 EESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHG 428
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 34/238 (14%)
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDV--VSWNSLILA 147
GQ+ H L + L T + YA ++ AR++FD++P + ++W+ +I A
Sbjct: 18 GQIIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRA 77
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y + G EKA +++ KML V+P T
Sbjct: 78 YVSNGFAEKALDLYYKML-------------------------------NSGVRPTKFTY 106
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
VL ACA L ++E G IH + + A++ + TAL+D YAKCG ++ +++VF +
Sbjct: 107 PFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPK 166
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDS-CVKADDITFIGLLSACSHAGLVQEG 324
+D+ WNAMI G +LH + L +M S C+ + T +G+ A AG ++EG
Sbjct: 167 RDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREG 224
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 36/232 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ D + +L A L++ G HG + G+ + + AL+ MY
Sbjct: 400 MKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNALMDMYTKCGK 459
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +VF+ M ++DI++WN+ML F G A+ L + M
Sbjct: 460 LYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQ----------------- 502
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM------LVKNVITWNT 174
D D V+ +++ A +++G +++ ++F M ++ + +N
Sbjct: 503 ----------DTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNC 552
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
M R+ E D ++M +PD + ++LSAC ++E G +
Sbjct: 553 MTDLLARAGYLDEAYDFVNKMP---FEPDIRVLGTLLSACWTYKNVELGNEV 601
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 158/461 (34%), Positives = 255/461 (55%), Gaps = 16/461 (3%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L L +++H IK G ++V AL+ MY ++DA K F++M D
Sbjct: 322 ILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITD 381
Query: 76 IIAWNSMLDAFASCGQMDHA------MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
+++WNS++ A+ A M+L P D+ + + S A+ ++R +
Sbjct: 382 VVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQP--DLLTLVSLASIVAQSRDCKNSRSV 439
Query: 130 FDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+ + DVV N+++ Y G ++ A ++F+ +LVK+VI+WNT++TGY ++ L
Sbjct: 440 HGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGL 499
Query: 185 YIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E ++++ M+ + P+ T S+L A A++G+L+ G RIH L + T
Sbjct: 500 ASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVAT 559
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
LID+Y KCG + ++ +FY+ + WNA+I +HG+ LKL GEM D VK
Sbjct: 560 CLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKP 619
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D +TF+ LLSACSH+G V+EG F R+ +++G+ L+HYGCMVDLLGRA L+ A
Sbjct: 620 DHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGF 678
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I+ MP +P SI GALL AC IH ++E+G + A + + + G ++ +N+YA+ G+
Sbjct: 679 IKDMPLQPDASIWGALLGACRIHGNIELG-KFASDRLFEVDSKNVGYYVLLSNIYANVGK 737
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
WE ++ R++ + G+ KT G S IEVN F G H
Sbjct: 738 WEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSH 778
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 217/450 (48%), Gaps = 27/450 (6%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D Y+FP +LKA G L G +H K GF +V+V +L+ MY A
Sbjct: 214 IRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 270
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT-SFNIMISGY---ARIG 121
+F+ MP +D+ +WN+M+ G A+ ++D M L+ + +F ++S ++G
Sbjct: 271 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330
Query: 122 KIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
I +A Y+ D+ N+LI Y G +E A + F++M + +V++WN+++
Sbjct: 331 DISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIA 390
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LA 236
Y ++ + F +M+ +PD LT+ S+ S A + +H + G L
Sbjct: 391 AYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLM 450
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ A++DMYAK G ++ + +VF VKDV WN +I G A +G A+++ +M
Sbjct: 451 EDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVY-KM 509
Query: 297 NDSC--VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY--GCMVDLLG 352
+ C + + T++ +L A +H G +Q+G + R+ K L+ + C++D+ G
Sbjct: 510 MEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIK---TNLHLDVFVATCLIDVYG 566
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
+ L A+ L +P E + + A++S IH E + K+ + + +
Sbjct: 567 KCGRLVDAMSLFYQVPQESSVT-WNAIISCHGIHGHAE---KTLKLFGEMLDEGVKPDHV 622
Query: 413 MFANLYASCGQ--WEEANRW-RNMMNDTGI 439
F +L ++C + E +W +M + GI
Sbjct: 623 TFVSLLSACSHSGFVEEGKWCFRLMQEYGI 652
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 165/347 (47%), Gaps = 20/347 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH + G +++ T L+ +Y +L + + F+++P+KD+ WNSM+ A+ G
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197
Query: 92 MDHAM----KLIDLMPLK-DVTSFNIMISGYARI---GKIHSARYIFDKVPAKDVVSWN- 142
A+ +L+ + ++ D +F ++ + +IH + K WN
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAF-------KLGFQWNV 250
Query: 143 ----SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
SLI Y+ G A +F M +++ +WN M++G +++ + +D+ DEM+
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+K +++TV S+L C LG + T IH+Y +GL + + ALI+MYAK G++E +
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+ F + + DV WN++I + A +M + + D +T + L S + +
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+ + + + + + +VD+ + LLD A ++ E
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFE 477
>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 594
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 238/465 (51%), Gaps = 11/465 (2%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYG-SLRCIDDA 64
V + ++ +LKA + + G + H K G VYVQ ALL MY S +DDA
Sbjct: 105 VQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDA 164
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARI 120
VF +P K ++W +++ F G + M L+DV SF+I A I
Sbjct: 165 LSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASI 224
Query: 121 GKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ I V D NS++ Y + A F ++ KN+ITWNT++
Sbjct: 225 SSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLI 284
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY RS E + LF +M + KP+ T TS+ +ACANL L G ++H G
Sbjct: 285 AGYERSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFD 343
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
N +LIDMYAKCGSI S ++F +D+ W M++G HGYG A+KL EM
Sbjct: 344 KNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEM 403
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
S ++ D I F+G+L CSHAGLV +G + F M +D+ + E Y C+VDLLGRA
Sbjct: 404 VQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGR 463
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
++ A +L+E MPFEP ES+ GALL AC ++ +G+ A+ V + ++ G ++ +
Sbjct: 464 VEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMA-GTYLLLSK 522
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+YA+ G+W E + R +M K G S IE+ + F+ G
Sbjct: 523 IYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGA 567
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 1/185 (0%)
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
P V +LI +Y + G +A +F ++ ++V+TW M+ G+ Y + +F
Sbjct: 38 TPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMF 97
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY-AK 251
EM V+P+ T++SVL AC + +L GA H AT +G+ + + AL+DMY A
Sbjct: 98 SEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAAS 157
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
C +++ +L VF +K W +I G G GY+ L +M V + +F
Sbjct: 158 CATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIA 217
Query: 312 LSACS 316
AC+
Sbjct: 218 ARACA 222
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 142/333 (42%), Gaps = 19/333 (5%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
T L+K Y +A +F ++PE+D++ W +M+ F SC A + M +V
Sbjct: 47 TNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQ 106
Query: 109 SFNIMISGYARIGK----------IHS--ARYIFDKVPAKDVVSWNSLILAY-TNAGEME 155
+S + K HS ++ D + V N+L+ Y + M+
Sbjct: 107 PNAFTMSSVLKACKGMKALSCGALAHSLATKHGID----RSVYVQNALLDMYAASCATMD 162
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
A +F + +K ++W T++ G+ + F +M +V P+ + + ACA
Sbjct: 163 DALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACA 222
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
++ S G +IH T GL + +++DMY +C + + F + K++ WN
Sbjct: 223 SISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNT 282
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
+I G +L L +M K + TF + +AC++ ++ G ++ + +
Sbjct: 283 LIAGYE-RSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR- 340
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G + + ++D+ + + + +L MP
Sbjct: 341 GFDKNVALINSLIDMYAKCGSISDSHKLFCDMP 373
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + ++F + A L+ G +HG ++ GF +V + +L+ MY
Sbjct: 302 MGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGS 361
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
I D+ K+F MP +D+++W +M+ + + G A+KL D M + I+ G
Sbjct: 362 ISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMG 417
>gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
Length = 661
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 233/418 (55%), Gaps = 7/418 (1%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V T ++K Y CI +A ++F +MP+ + +WN+M S G++D A++L D MP
Sbjct: 215 NVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMP 274
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
K+V S+ IM++G A+ G + AR FD++P KD+ +WNS+I AYTN G++ A +F
Sbjct: 275 HKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDI 334
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M KN++TWN ++ GY + L E + LF M V PD T+ SVL + +
Sbjct: 335 MPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVR-- 392
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+IH +T G + L+ MY++ G + + F + KD W +MI LA H
Sbjct: 393 -QIHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANH 451
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G AL+ +M K TF +LSAC+H GLV++G ++F + +G+ +EH
Sbjct: 452 GCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLEPTIEH 511
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAK 402
Y C+VDLLGRA + A E+++ M + E+ILG LL +C+ H ++E+G V + + K
Sbjct: 512 YSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLV-K 570
Query: 403 SNYLSDGELMMFANLYASCGQWEE-ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ G + AN++AS G W E A+ W+ +M + + KT G S IEVN H F +
Sbjct: 571 IDPSGSGGYTLLANVFASGGMWNEVASVWK-IMKGSKVKKTPGFSQIEVNARNHVFYS 627
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 138/271 (50%), Gaps = 8/271 (2%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C +++ T +L Y +D A ++F+ M K+++AW M+ + G +D A +L DL
Sbjct: 120 CRGIHLDTVMLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDL 179
Query: 102 MPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
MP ++V S+ M+ GYA G + AR +FDK+P ++VV+W ++ AY + G +++A E+F
Sbjct: 180 MPYRNVFSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELF 239
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
+M N +WN M TG + + + V LFD+M NV ++ T +++ A G +
Sbjct: 240 NRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNV----VSWTIMVTGLAQNGFVS 295
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
D + A ++I Y G + + +F K++ WN +I G +
Sbjct: 296 RAREFF----DRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYS 351
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
++ AL+L M S V D T I +L
Sbjct: 352 MNNLKDEALRLFLLMLRSAVSPDSTTLISVL 382
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 24/236 (10%)
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
T +L G ++ R+ D N A T ++ Y + G ++++ +F
Sbjct: 127 TVMLDGYVKAGQVDRARRLF----DGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPY 182
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
++VF W M+ G A +G L+ EM D + + + + ++ A G +QE EL
Sbjct: 183 RNVFSWTTMVQGYAHNGM----LREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALEL 238
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES---ILGALLSACV 384
F+RM + + + M L A +D A++L + MP + S ++ L
Sbjct: 239 FNRMPQMNSYS-----WNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGF 293
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+ + E DR+ K N + Y + GQ +A R ++M +V
Sbjct: 294 VSRAREFFDRMPKKDIPAWNSM--------ITAYTNDGQVNDAQRLFDIMPSKNLV 341
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+HG + K G+ + L+ MY + A+ F ++ EKD I W SM+ A A+ G
Sbjct: 394 IHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGC 453
Query: 92 MDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKV 133
A++ M T+F ++S +G + R IF +
Sbjct: 454 APCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSI 499
>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 561
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 252/469 (53%), Gaps = 34/469 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ LG D+ S L+A L +G +HG +++ VYV T+L+ MY C
Sbjct: 9 LHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDMYVKNDC 68
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++ A V + K++ AWNS++ ++ GQ A+KL++ M + +T
Sbjct: 69 LEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITP----------- 117
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM----LVKNVITWNTMV 176
D+V+WN L+ Y+ G +++A + ++ + NV++W ++
Sbjct: 118 ----------------DLVTWNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALI 161
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
+G +++ Y++ + +F +M+A NVKP+ T+ S+L ACA L+ G +H ++ G
Sbjct: 162 SGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFV 221
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ + TALIDMY++ G ++ + VF K Q K + CWN M++G A+H +G + L +M
Sbjct: 222 DDIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKM 281
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ ++ D ITF LLSAC ++GLV EG + F M++D+ + +EHY CMVDLLG++
Sbjct: 282 RERHIRPDAITFTALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGF 341
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFA 415
LD A IE MP +P SI GALL++C IH+++++ + A K+ + N ++ LMM
Sbjct: 342 LDEASHFIETMPIKPDASIWGALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMM-- 399
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
NLY+S +W R ++ M + S +VN S H F G H
Sbjct: 400 NLYSSLNRWVAVERLKHSMTVLAMKIPPVWSWTQVNQSIHVFSTEGRPH 448
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 4/211 (1%)
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
V+ F + + KPD +VTS L A LG + G IH Y + L + + T+L+D
Sbjct: 2 VLTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVD 61
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY K +E++ V ++++ K+V WN++I G + G A+KLL +M + + D +T
Sbjct: 62 MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVT 121
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ GL+S S G + E + +R+ K G+T + + ++ + A+++ M
Sbjct: 122 WNGLVSGYSMQGRIDEALTIINRI-KSSGITPNVVSWTALISGCSQNEKYMDALKIFSQM 180
Query: 368 PFE---PTESILGALLSACVIHQDLEIGDRV 395
E P + + +LL AC L+ G+ +
Sbjct: 181 QAENVKPNSTTICSLLCACAGPSLLKKGEEL 211
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 156/493 (31%), Positives = 263/493 (53%), Gaps = 47/493 (9%)
Query: 18 KAAGILSSSCIGL----MLHGQTIKTGFCGHVYVQTALLKMYGSLRCID---DAFKVFEK 70
+A I+ S C L LH + YV T LL+ +L I +F +
Sbjct: 12 EAVRIIESHCTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQ 71
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT--SF------------------ 110
+ + +++++ A+A G H+++L M +V+ SF
Sbjct: 72 VHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSLGSQL 131
Query: 111 ----------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEM 154
N +I Y + G + AR +FD++P +DVV+W LI+AY +G+M
Sbjct: 132 HLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDM 191
Query: 155 EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
+ A E+F + VK+++ W +MVTGY ++ + + + F +M+ V D +T+ +SAC
Sbjct: 192 DSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISAC 251
Query: 215 ANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
A LG I A + G SN +ALIDMY+KCG++E++ VF + +VF
Sbjct: 252 AQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFS 311
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332
+++MI+G A+HG +A+KL EM ++ +K + +TF+GL +ACSHAG+V++G +LF M+
Sbjct: 312 YSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMK 371
Query: 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG 392
+ +GV+ +HY CM DLLGRA L++A++L++ MP EP + GALL A IH + ++
Sbjct: 372 ECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVA 431
Query: 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV-N 451
+ +A + + G ++ + YA +W++ +R R +M + + K G S +E N
Sbjct: 432 E-IASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKN 490
Query: 452 GSYHKFLAGGIGH 464
G H+F AG + H
Sbjct: 491 GIIHEFFAGDVKH 503
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 65/459 (14%)
Query: 10 NYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFE 69
+ +FP L +AA L+S + L LH ++ G
Sbjct: 60 HLTFPFLGRAAARLASPRLALSLHAHPLRLGL---------------------------- 91
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
+P D+ NS++ +A+C D A +L D +P ++ S+N ++ GYA+ + SAR +
Sbjct: 92 -LP-WDLYVANSLVHMYAACALPDLARRLFDEIPRPNLVSWNALLDGYAKCRDLLSARCV 149
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
F+++P +DVVSW+++I GE +A +F+ M
Sbjct: 150 FNRMPQRDVVSWSAMIDGCVKCGEHREALALFEMM------------------------- 184
Query: 190 DLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ AGN V+ + +T+ SVL ACA+LG L G ++H Y ++G N T+L+DM
Sbjct: 185 ---EAAGAGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGFLLNLRLATSLVDM 241
Query: 249 YAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
YAKCG+I ++LEVF V DV WNA+I GLA+HG ++++ EM +S V D+I
Sbjct: 242 YAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGVVPDEI 301
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
T++ LLSAC H GLV E LF +E G+ +EHY C+VD+LGRA L+ A ++++
Sbjct: 302 TYLVLLSACVHGGLVGEAWRLFRSLEVQ-GLRPHVEHYACLVDVLGRAGHLEEAYGVVKS 360
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYASCGQWE 425
MP EP S+LGALL+AC +H +E+G+ V + +V + ++ DG + +N+YA +W+
Sbjct: 361 MPMEPNVSVLGALLNACHLHGWVELGEVVGRQLVQLQPDH--DGRYIGLSNIYAIARRWQ 418
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
EA + R +M + G+ K G S I+V G H+F+A H
Sbjct: 419 EAKKARKVMEERGVKKIPGFSEIDVGGRLHRFIAHDKAH 457
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV A++ + +L A L G +H + GF ++ + T+L+ MY I +A
Sbjct: 192 GVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGFLLNLRLATSLVDMYAKCGAISEA 251
Query: 65 FKVFEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYA 118
+VF +P D++ WN+++ A G ++++ M + D ++ +++S
Sbjct: 252 LEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGVVPDEITYLVLLSACV 311
Query: 119 RIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKM 164
G + A +F + + V + L+ AG +E+A + K M
Sbjct: 312 HGGLVGEAWRLFRSLEVQGLRPHVEHYACLVDVLGRAGHLEEAYGVVKSM 361
>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Cucumis sativus]
Length = 712
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 156/469 (33%), Positives = 249/469 (53%), Gaps = 13/469 (2%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D+Y++ + LKA+ + G +H QT+K GF + +V +L MY +D
Sbjct: 213 VEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGL 272
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMIS---GYA 118
F KM D+++W +++ A+ G+ D ++ M +V +F+ +IS +A
Sbjct: 273 HTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFA 332
Query: 119 RIG---KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
R+ ++H+ V A V NS++ Y+ GE+ ++F M +++ITW+T+
Sbjct: 333 RLKWGEQLHAHVLCVGFVNALSVA--NSIMTLYSKCGELASVSKVFCSMKFRDIITWSTI 390
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ Y + E + M++ KP+ + SVLS C ++ LE G ++H + GL
Sbjct: 391 IAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGL 450
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ALI MYAKCGSI ++ ++F S D+ W AMI G A HG+ A++L
Sbjct: 451 EQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFEN 510
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+ ++ D +TFIG+L+ACSHAG+V G F+ M KD+ +T EHYGCM+DLL RA
Sbjct: 511 IQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAG 570
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L A LI +MP + + + LL AC IH D++ G R A V K + G + A
Sbjct: 571 RLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVL-KLDPNCAGTHITLA 629
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N++A+ G+W+EA R +M G+VK G S ++V S F++G H
Sbjct: 630 NIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSH 678
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 159/331 (48%), Gaps = 8/331 (2%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D + L LK G+ + G LHG ++KTG V+V +ALL MY + I + KVF
Sbjct: 115 DPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVF 174
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIH 124
++MP ++ + W +++ G + + M D ++ I + A G ++
Sbjct: 175 DEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALN 234
Query: 125 SARYIFDKVPAK--DVVSW--NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
R I + K D S+ NSL Y G+++ F+KM +V++W T+VT Y+
Sbjct: 235 HGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYI 294
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + F M+A NV P+ T ++V+S CAN L+ G ++H + G +
Sbjct: 295 QMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALS 354
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+++ +Y+KCG + +VF + +D+ W+ +I + GYG A + L M
Sbjct: 355 VANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEG 414
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRM 331
K ++ +LS C ++++G +L + +
Sbjct: 415 PKPNEFALASVLSVCGSMAILEQGKQLHAHV 445
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 125/291 (42%), Gaps = 13/291 (4%)
Query: 52 LKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD----- 106
LK+ + DA +F+++P++D ++W +++ + + A++L M L+
Sbjct: 56 LKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRID 115
Query: 107 --VTSFNIMISG----YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEM 160
+ S + G Y +H + V ++L+ Y GE+ ++ ++
Sbjct: 116 PFLLSLGLKTCGLGLNYLYGTNLHG--FSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKV 173
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
F +M +N +TW ++TG +R+ + F M V+ D L A A+ G+L
Sbjct: 174 FDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGAL 233
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
G IH G N +L MY KCG ++ L F K + DV W ++
Sbjct: 234 NHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAY 293
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
G L+ M S V ++ TF ++S C++ ++ G +L + +
Sbjct: 294 IQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 135/299 (45%), Gaps = 20/299 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V + Y+F ++ + G LH + GF + V +++ +Y
Sbjct: 309 MRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGE 368
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+ KVF M +DII W++++ A++ G + A + + M P + + ++S
Sbjct: 369 LASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSV 428
Query: 117 YARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ + + + V + + + ++LI+ Y G + +A ++F ++I+W
Sbjct: 429 CGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISW 488
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M++GY E ++LF+ ++ ++PD +T VL+AC++ G ++ G +
Sbjct: 489 TAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLG-----FYYF 543
Query: 233 NGLASNPHATTA------LIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
N ++ + H T + +ID+ + G + + + ++ D W+ ++ +HG
Sbjct: 544 NSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHG 602
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 145/353 (41%), Gaps = 67/353 (18%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D+ N + + + AR +FD++P +D VSW ++I Y N+ + +A +F KM
Sbjct: 48 DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKM- 106
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
L+S+L I+ L +K + +YL G
Sbjct: 107 -------------RLQSELRIDPFLLSLGLKTCGLGLNYL----------------YGTN 137
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H ++ GL ++ +AL+DMY K G I +S +VF + ++ W A+I GL GY
Sbjct: 138 LHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGY 197
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR-MEKDF--------G 336
A L M S V+ D + L A + +G + G + ++ ++K F
Sbjct: 198 SEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANS 257
Query: 337 VTRKLEHYGCM---VDLLGRARLLD---------------------RAIELIEAMPFEPT 372
+T G + + + R LD +A + + A P
Sbjct: 258 LTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPN 317
Query: 373 ESILGALLSACVIHQDLEIGDRV-AKMVCAK-SNYLSDGELMMFANLYASCGQ 423
E A++S C L+ G+++ A ++C N LS +M LY+ CG+
Sbjct: 318 EYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIM--TLYSKCGE 368
>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 606
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 238/465 (51%), Gaps = 11/465 (2%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYG-SLRCIDDA 64
V + ++ +LKA + + G + H K G VYVQ ALL MY S +DDA
Sbjct: 105 VQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDA 164
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARI 120
VF +P K ++W +++ F G + M L+DV SF+I A I
Sbjct: 165 LSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASI 224
Query: 121 GKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ I V D NS++ Y + A F ++ KN+ITWNT++
Sbjct: 225 SSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLI 284
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY RS E + LF +M + KP+ T TS+ +ACANL L G ++H G
Sbjct: 285 AGYERSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFD 343
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
N +LIDMYAKCGSI S ++F +D+ W M++G HGYG A+KL EM
Sbjct: 344 KNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEM 403
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
S ++ D I F+G+L CSHAGLV +G + F M +D+ + E Y C+VDLLGRA
Sbjct: 404 VQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGR 463
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
++ A +L+E MPFEP ES+ GALL AC ++ +G+ A+ V + ++ G ++ +
Sbjct: 464 VEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMA-GTYLLLSK 522
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+YA+ G+W E + R +M K G S IE+ + F+ G
Sbjct: 523 IYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGA 567
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 1/185 (0%)
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
P V +LI +Y + G +A +F ++ ++V+TW M+ G+ Y + +F
Sbjct: 38 TPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMF 97
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY-AK 251
EM V+P+ T++SVL AC + +L GA H AT +G+ + + AL+DMY A
Sbjct: 98 SEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAAS 157
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
C +++ +L VF +K W +I G G GY+ L +M V + +F
Sbjct: 158 CATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIA 217
Query: 312 LSACS 316
AC+
Sbjct: 218 ARACA 222
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 142/333 (42%), Gaps = 19/333 (5%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
T L+K Y +A +F ++PE+D++ W +M+ F SC A + M +V
Sbjct: 47 TNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQ 106
Query: 109 SFNIMISGYARIGK----------IHS--ARYIFDKVPAKDVVSWNSLILAY-TNAGEME 155
+S + K HS ++ D + V N+L+ Y + M+
Sbjct: 107 PNAFTMSSVLKACKGMKALSCGALAHSLATKHGID----RSVYVQNALLDMYAASCATMD 162
Query: 156 KAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215
A +F + +K ++W T++ G+ + F +M +V P+ + + ACA
Sbjct: 163 DALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACA 222
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
++ S G +IH T GL + +++DMY +C + + F + K++ WN
Sbjct: 223 SISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNT 282
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
+I G +L L +M K + TF + +AC++ ++ G ++ + +
Sbjct: 283 LIAGYE-RSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR- 340
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G + + ++D+ + + + +L MP
Sbjct: 341 GFDKNVALINSLIDMYAKCGSISDSHKLFCDMP 373
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G + ++F + A L+ G +HG ++ GF +V + +L+ MY
Sbjct: 302 MGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGS 361
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
I D+ K+F MP +D+++W +M+ + + G A+KL D M + I+ G
Sbjct: 362 ISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMG 417
>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
Length = 756
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 231/430 (53%), Gaps = 42/430 (9%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V LL Y ++ A+ +F +MPEK+ I+W +M+ F G++ A ++ MP
Sbjct: 259 NVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMP 318
Query: 104 -------------------------------LKDVTSFNIMISGYARIGKIHSARYIFDK 132
++D +N MISGY + G + A +F +
Sbjct: 319 SDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQ 378
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+P KD++SWN++I G++ KA +F+KM +N ++WN++++G++++ L++E + F
Sbjct: 379 MPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHF 438
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
M+ D+ T LSA ANL +L+ G + H G S+ ALI YAKC
Sbjct: 439 MLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKC 498
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G + ++ +VF + V+D+ WNA+I G A +G G + + EM + V+ D+IT + +L
Sbjct: 499 GRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLVVVL 558
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
SACSHAGL+ EG F+ M K + + EHY CMVDLLGRA L A EL++ M +P
Sbjct: 559 SACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPN 618
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEA 427
+ GALL AC +H++ EI A+ + C SNY+ + +N+ G+W++A
Sbjct: 619 AGVWGALLGACRVHKNHEIAWLAAEKLFELEPCKASNYV------LLSNICVEAGKWDDA 672
Query: 428 NRWRNMMNDT 437
++ R +M ++
Sbjct: 673 DKVRVLMKES 682
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 184/377 (48%), Gaps = 30/377 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+DA + ++MP DI++WNS+L ++ +++ D MP KD+ S+N+M+ GY R
Sbjct: 152 FEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVSWNLMLEGYVRA 211
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + A F ++P+ +V+SW +L+ Y AG M +A E+F +M +NV+ WN +++GY+
Sbjct: 212 GDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYV 271
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ +LF EM N ++ T+++S G L+ + + N
Sbjct: 272 QFSQVEAAYNLFIEMPEKN----SISWTTMVSGFVRSGKLQEAKDV----LSKMPSDNVG 323
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
A TAL+ Y K I+ + ++F V+D CWN MI G G A+ L +M +
Sbjct: 324 AKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNK- 382
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-----LEHYGCMVDLLGRAR 355
D I++ +++ C+ G +++ +F +M++ V+ G V+ L
Sbjct: 383 ---DMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFM 439
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD---GELM 412
L+ R + + + LSA L+IG + ++ ++ ++SD G +
Sbjct: 440 LMRRDAKSADWCTY-------ACCLSASANLATLQIGRQFHSLL-VRTGFISDSSPGNAL 491
Query: 413 MFANLYASCGQWEEANR 429
+ A YA CG+ EA +
Sbjct: 492 ISA--YAKCGRMLEARQ 506
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 166/339 (48%), Gaps = 17/339 (5%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
+A ++F++MP ++ ++WN+M+ A + G+++ A L D MP ++ S+ IM+S Y R G+
Sbjct: 60 EARRLFDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGE 119
Query: 123 IHSARYIFDKVPAKDVVS-WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
+ AR + D++P + + +N++I Y G E A + ++M ++++WN+++ G +R
Sbjct: 120 LTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIR 179
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
++ V FDEM D ++ +L G L+ + + N +
Sbjct: 180 NEEISRSVQFFDEMP----DKDLVSWNLMLEGYVRAGDLDVASAFFSRIP----SPNVIS 231
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
L++ Y + G + ++ E+F + ++V WN ++ G AA L EM +
Sbjct: 232 WVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEK-- 289
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEHYGCMVDLLGRARLLDRA 360
+ I++ ++S +G +QE ++ S+M D G L H +L+ AR L
Sbjct: 290 --NSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDG 347
Query: 361 IELIEAMPFEPTES---ILGALLSACVIHQDLEIGDRVA 396
I + +A+ + S G L A V+ Q + D ++
Sbjct: 348 IVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMIS 386
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 117/262 (44%), Gaps = 20/262 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ AD ++ L A+ L++ IG H ++TGF AL+ Y
Sbjct: 441 MRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGR 500
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
+ +A +VF++M +DI++WN+++D +AS G + + M V + +++S
Sbjct: 501 MLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLVVVLSA 560
Query: 117 YARIGKIHSARYIFDKV----PAKDVVS-WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G I + F+ + K V + ++ AG + +A E+ + M ++ N
Sbjct: 561 CSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAG 620
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP----DYLTVTSVLSACANLGSLETGARI 226
W ++ G R E+ L E K ++P +Y+ ++++ C G + ++
Sbjct: 621 VWGALL-GACRVHKNHEIAWLAAE-KLFELEPCKASNYVLLSNI---CVEAGKWDDADKV 675
Query: 227 HVYATDNGLAS-NPHATTALID 247
V ++ L S N H + ++D
Sbjct: 676 RVLMKESILRSCNIHISNKMLD 697
>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 257/480 (53%), Gaps = 20/480 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCI--GLMLHGQTIKTGFCGHVYVQTALLKMYGSL 58
MQ LG+ + +F G L+S + GL +HG K G H+ + +++ MY L
Sbjct: 120 MQLLGLELSSATF------TGFLASCSLPQGLSIHGYITKLGLDLHLPLANSIMSMYIRL 173
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM----- 113
ID A VF + +K I++W +L + S G + + + M + V +I+
Sbjct: 174 NQIDGALSVFYTLHQKSIVSWTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLI 233
Query: 114 ----ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+SG + + + + KD + N L+ Y ++ A +F + K+V
Sbjct: 234 SCCKLSGNLLLAMLVHSLLLKSGFDHKDPID-NLLVAMYAKCKDLVSARRVFDAVHEKSV 292
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
W +M++GY + E + LF+ + +P+ LT+ +VLSACA +GSL G I Y
Sbjct: 293 FLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQY 352
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
NGL S+ T+LI M+ KCGSI+++ +F + KD+ W+AMI G A+HG G A
Sbjct: 353 ILLNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEA 412
Query: 290 LKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
L L +M N+ +K D I + +L ACSH+GL+++G + F M+KDFG+ ++HY C+V
Sbjct: 413 LNLFHKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLV 472
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DLLGRA ++ A+ I+ MP + LSAC H +LE+G+ AK + S
Sbjct: 473 DLLGRAGYVELALRTIQEMPVLVQARVWAPFLSACYTHHNLELGEFAAKNLFDLEPR-ST 531
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNL 468
G ++ NLY S G+W+EA + R+++N G+VK G S IE++G+ H A G HL ++
Sbjct: 532 GNFVLMTNLYTSMGKWKEAAKARSIINARGLVKEPGWSQIEIDGAVHVLAAEGQSHLESI 591
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 169/366 (46%), Gaps = 9/366 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GVH ++FP +LKA L S LH + TGF HV+VQTAL+ +Y C A
Sbjct: 23 GVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSA 82
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
VF++MP K +++WNS++ A +D + ++ M L + + +G+ +
Sbjct: 83 RLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCSLP 142
Query: 125 SARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
I + + NS++ Y +++ A +F + K++++W ++ GYL
Sbjct: 143 QGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYL 202
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ +V +F++M+ V PD + +++S C G+L +H +G
Sbjct: 203 SAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKDP 262
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
L+ MYAKC + + VF K VF W +MI G A GY AL L + +
Sbjct: 263 IDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTA 322
Query: 301 VKADDITFIGLLSACSHAGLVQEGCE-----LFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+ +++T +LSAC+ G ++ G E L + + D V L H C + +A+
Sbjct: 323 SRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQ 382
Query: 356 LLDRAI 361
L I
Sbjct: 383 ALFERI 388
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 253/468 (54%), Gaps = 36/468 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE G + +Y+ +L A L G +HG+ + T V+V
Sbjct: 146 MQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFV------------- 192
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
WN++ + +A CG +D A L D M K+V S+N MISGY +
Sbjct: 193 ------------------WNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQN 234
Query: 121 GKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
G+ + +F ++ + D V+ ++++ AY G +++A + F+++ K+ + W TM+
Sbjct: 235 GQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMM 294
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G ++ + + LF EM NV+PD T++SV+S+CA L SL G +H A G+
Sbjct: 295 VGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVD 354
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ ++AL+DMY+KCG + VF + ++V WN+MILG A +G AL L EM
Sbjct: 355 HDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEM 414
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+K D+ITF+G+LSAC HAGLV+ G F + K G+ +HY CM++LLGRA
Sbjct: 415 LHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGY 474
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
+D+A++LI++M FEP I LLS C I+ D+ G+ A+ + + + G +M +N
Sbjct: 475 MDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPH-NAGPYIMLSN 533
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+YA+CG+W++ R++M + I K A S IE++ HKF+A H
Sbjct: 534 IYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTH 581
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 167/341 (48%), Gaps = 20/341 (5%)
Query: 99 IDLMPLKDVTSF--NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
+DL + +F N ++ YA+ G + AR +FDK+ +DV SWN+++ AY+ +G +E
Sbjct: 48 MDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVED 107
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
+F +M V + +++NT++ G+ + + ++ F M+ + T SVL AC+
Sbjct: 108 LRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQ 167
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L ++ G +IH L + AL +MYAKCG+++Q+ +F + K+V WN+M
Sbjct: 168 LLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSM 227
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I G +G KL EM S + D +T +LSA G + E C+ F +++
Sbjct: 228 ISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDK 287
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGALLSACVIHQDLEIGD 393
V GC + G+ + A+ L M E P + +++S+C L G
Sbjct: 288 VCWTTMMVGCAQN--GKE---EDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQ 342
Query: 394 RV-AKMVCAKSNYLSDGELMM---FANLYASCGQWEEANRW 430
V K V + D +L++ ++Y+ CG E A+ W
Sbjct: 343 AVHGKAVI----FGVDHDLLVSSALVDMYSKCG--ETADAW 377
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 153/348 (43%), Gaps = 75/348 (21%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
++Q LL +Y + DA +F+KM +D+ +WN+ML A++ G ++ + D M +
Sbjct: 58 TFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSV 117
Query: 105 KDVTSFNIMISG--------------------------YARIGKIHSARYIFDKVPAKD- 137
D S+N +I+G Y + +H+ + D K
Sbjct: 118 HDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQI 177
Query: 138 ------------VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
V WN+L Y G +++A +F +M+ KNV++WN+M++GYL++
Sbjct: 178 HGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQP 237
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
LF EM++ + PD +T++++LSA
Sbjct: 238 ETCTKLFCEMQSSGLMPDQVTISNILSA-------------------------------- 265
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
Y +CG I+++ + F + + KD CW M++G A +G AL L EM V+ D+
Sbjct: 266 ---YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDN 322
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
T ++S+C+ + +G + + FGV L +VD+ +
Sbjct: 323 FTISSVVSSCARLASLCQGQAVHGKAVI-FGVDHDLLVSSALVDMYSK 369
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 208/363 (57%), Gaps = 11/363 (3%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+I+ YA G + AR++FD +P + VVSWNS++ Y + + A +F M +NV++W
Sbjct: 82 LITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFDGARRVFDVMPCRNVVSW 141
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
TMV G R+ + + LF EM+ V+ D + + + LSACA LG L+ G IH Y
Sbjct: 142 TTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAALSACAELGDLKLGRWIHWYVQQ 201
Query: 233 NGLASNPHATT-----ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+A N + ALI MYA CG + ++ +VF K K W +MI+ A G G
Sbjct: 202 RFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMPRKSTVSWTSMIMAFAKQGLGK 261
Query: 288 AALKLLGEMNDSCVK-----ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342
AL L M VK D+ITFIG+L ACSHAG V EG ++F+ M+ +G++ +E
Sbjct: 262 EALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGFVDEGHQIFASMKHTWGISPSIE 321
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCA 401
HYGCMVDLL RA LLD A LIE MP P ++I GALL C IH++ E+ +V K+V
Sbjct: 322 HYGCMVDLLSRAGLLDEARGLIETMPLNPNDAIWGALLGGCRIHRNSELASQVENKLVPE 381
Query: 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+ + G L++ +N+YA +W++ R M + G+ K G S I++NG H F+AG
Sbjct: 382 LNGDQAAGYLVLLSNIYAFGQRWQDVITVRQKMIEMGVKKPPGRSWIQINGVVHNFIAGD 441
Query: 462 IGH 464
+ H
Sbjct: 442 MTH 444
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 142/306 (46%), Gaps = 51/306 (16%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H + G+C +V+V T+L+ Y ++ A VF+ MP++ +++WNSML +
Sbjct: 60 GEQVHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVR 119
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDV---------- 138
C D A ++ D+MP ++V S+ M++G AR GK A +F ++ V
Sbjct: 120 CADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAA 179
Query: 139 ---------------VSW-------------------NSLILAYTNAGEMEKAGEMFKKM 164
+ W N+LI Y + G + +A ++F KM
Sbjct: 180 LSACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKM 239
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLF-----DEMKAGNVKPDYLTVTSVLSACANLGS 219
K+ ++W +M+ + + L E +DLF D +K V+PD +T VL AC++ G
Sbjct: 240 PRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGF 299
Query: 220 LETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMI 277
++ G +I G++ + ++D+ ++ G ++++ + + + W A++
Sbjct: 300 VDEGHQIFASMKHTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLNPNDAIWGALL 359
Query: 278 LGLALH 283
G +H
Sbjct: 360 GGCRIH 365
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 37/239 (15%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN ++ GY RS + V+ + M + +PD T +S+LSACA G ++ G ++H
Sbjct: 9 WNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVHATVL 68
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVF----YKSQV-------------------- 267
G SN T+LI YA G +E++ VF +S V
Sbjct: 69 VKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFDGARR 128
Query: 268 -------KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
++V W M+ G A +G AL L GEM +CV+ D + + LSAC+ G
Sbjct: 129 VFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAALSACAELGD 188
Query: 321 VQEGCELFSRMEKDFGVTRKLEH-----YGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
++ G + +++ F V R + ++ + +L A ++ MP + T S
Sbjct: 189 LKLGRWIHWYVQQRF-VARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMPRKSTVS 246
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 252/449 (56%), Gaps = 17/449 (3%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H IKT + VY++T L+ +Y RC+ DA +V ++MPE+++++W +M+ ++
Sbjct: 29 GQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQ 88
Query: 89 CGQMDHAMKLIDLMPLKDVT----SFNIMI------SGYARIGKIHSARYIFDKVPAKDV 138
G A+ L M + +F ++ SG+ +IHS + +
Sbjct: 89 RGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHS--LVIKTSFESHI 146
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+SL+ Y AG++ +A +F + ++V++ +++GY + L E +DLF ++
Sbjct: 147 FVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQRE 206
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
++ +Y+T SVL+A + L +L+ G ++H + L +LIDMY+KCGS+ S
Sbjct: 207 GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 266
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-DSCVKADDITFIGLLSACSH 317
+F + V WNAM++G + HG G A++L M ++ VK D +TF+ +LS CSH
Sbjct: 267 RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 326
Query: 318 AGLVQEGCELFSRM--EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
G+ G E+F M +KD G ++EHYGC+VDL GRA ++ A E I+ MPFEPT +I
Sbjct: 327 GGMEDRGLEIFYEMVNQKD-GFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAI 385
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
G+LL AC +HQ++ IG+ VA+ + + + G ++ +NLYAS G+W++ R +M
Sbjct: 386 WGSLLGACRVHQNVHIGEFVARRLLEIESE-NAGNYVILSNLYASAGRWDDVRTVRELMK 444
Query: 436 DTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ ++K G S IE++ + H F A H
Sbjct: 445 EKAVIKEPGRSWIELDQTLHTFHASDRSH 473
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 14/292 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + ++F +L + S +G +H IKT F H++V ++LL MY I +A
Sbjct: 106 GTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEA 165
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM-------ISGY 117
+VF+ +PE+D+++ +++ +A G + A+ L + + + S + +SG
Sbjct: 166 RRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGL 225
Query: 118 ARI--GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
A + G+ + + K+P VV NSLI Y+ G + + +F M + VI+WN M
Sbjct: 226 AALDHGRQVHSHVLRAKLPFY-VVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAM 284
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARI--HVYATD 232
+ GY + L E V+LF MK N VKPD +T +VLS C++ G + G I +
Sbjct: 285 LVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQK 344
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC-WNAMILGLALH 283
+G ++D++ + G +E++ E K + W +++ +H
Sbjct: 345 DGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 396
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q G+ ++ ++ +L A L++ G +H ++ +V +Q +L+ MY
Sbjct: 203 LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 262
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMIS 115
+ + ++F+ MPE+ +I+WN+ML ++ G A++L LM + D +F ++S
Sbjct: 263 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 322
Query: 116 GYARIGKIHSARYIF-DKVPAKD-----VVSWNSLILAYTNAGEMEKAGEMFKKM 164
G + G IF + V KD + + ++ + AG +E+A E KKM
Sbjct: 323 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKM 377
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
SVL+ C + ++ G R+H + + T LI +Y KC + + V + +
Sbjct: 15 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+V W AMI G + GY AL L EM S ++ TF +L++C+ + Q G ++
Sbjct: 75 NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 134
Query: 329 S 329
S
Sbjct: 135 S 135
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 245/457 (53%), Gaps = 40/457 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G+ + + P +LKA G LS G +H +K F Y+ +AL+ MY
Sbjct: 119 MQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMY----- 173
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ CG ++ A ++ D + KD+ N M+SGYA+
Sbjct: 174 --------------------------SKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQH 207
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK----NVITW 172
G +H A + K+ +VVSWN+LI ++ G+ E+F+ M +V++W
Sbjct: 208 GFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSW 267
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++++G++++ E D F EM P +T++S+L AC N+ +L G IH YA
Sbjct: 268 TSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMV 327
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G+ + + +AL+DMYAKCG I ++ +FY ++ WN++I G A HGY A++L
Sbjct: 328 IGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIEL 387
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M +S K D +TF +L+ACSHAG+V+ G LF +M++ + + +LEHY CMVDLLG
Sbjct: 388 FNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLG 447
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L A +LI+AMP EP + + GALL AC H ++E+ + A+ + + S G +
Sbjct: 448 RAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLF-ELEPESPGSSL 506
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+ +NLYA G+W A + + MM K G S IE
Sbjct: 507 LLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 543
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 139/303 (45%), Gaps = 10/303 (3%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ YT G++ A ++F K+ N+ W + R Y E + F EM+ ++P+
Sbjct: 68 LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 127
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ S+L AC +L TG +H N S+ + +ALI MY+KCG +E++ VF
Sbjct: 128 QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 187
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
KD+ NAM+ G A HG+ + AL L+ +M + VK + +++ L++ S G
Sbjct: 188 WIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSM 247
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALL 380
E+F M + GV + + ++ + + + M F P+ + +LL
Sbjct: 248 VSEVFRLMTAN-GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLL 306
Query: 381 SACVIHQDLEIGDRV---AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
AC +L G + A ++ + + L+ ++YA CG EA MM +
Sbjct: 307 PACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALV---DMYAKCGYISEAKILFYMMPER 363
Query: 438 GIV 440
V
Sbjct: 364 NTV 366
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%)
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+L G +H + GLA + L+ Y +CG + + ++F K ++ W +
Sbjct: 42 ALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTG 101
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
A G+ AL EM ++ + +L AC H
Sbjct: 102 ACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGH 140
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 164/457 (35%), Positives = 248/457 (54%), Gaps = 9/457 (1%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L A L +G+ + IK GF HV + T L+ ++ ++ A +F ++ +KD
Sbjct: 37 VLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKD 96
Query: 76 IIAWNSMLDAFASCGQMDHAMKLID--LMPLKDVTSFNI--MISGYARIGKIHSARYIFD 131
+I+ N+M+ F G+ + +++L L + V+S I +I Y+ G + I
Sbjct: 97 LISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHG 156
Query: 132 KVPAKDVVSWNS----LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+VS +S L Y EM A ++F + K + +WN M++G ++ L
Sbjct: 157 FCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDA 216
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ LF M+ NV P+ +TVTS+LSACA +G+L G +H N SN + +TALID
Sbjct: 217 AISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALID 276
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MYAKCGSI + E+F K+ WNAMI G LHG+G ALKL +M S VK +T
Sbjct: 277 MYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLT 336
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
F+ +L ACSHAGLV+EG +F M DFG EHY CMVD+LGRA L +A+E I+AM
Sbjct: 337 FLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAM 396
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
P EP + GALL AC+IH+D + VA + + + G ++ +N+Y+ ++ +A
Sbjct: 397 PVEPGPPVWGALLGACMIHKDTNLA-HVASEKLFELDPENIGYYVLMSNIYSVERKYPQA 455
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
R + + KT G ++IE+ H F +G H
Sbjct: 456 ASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSH 492
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 38/298 (12%)
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
M++G++++ + + + +F +M GN + D TV +VL A A L L+ G +I A
Sbjct: 1 MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
G S+ T LI +++KCG +E + +F + + KD+ NAMI G +G +++L
Sbjct: 61 GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120
Query: 294 GEMNDSCVKADDITFIGLLSA-----------CSHAGLVQEG---------------CEL 327
E+ S + T +GL+ C H V+ G C L
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180
Query: 328 ----FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALL 380
F+R D + L + M+ + L D AI L + M P + ++L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCGQWEEANRWRNMMND 436
SAC L +G+ V ++ KSN + A ++YA CG A ++M +
Sbjct: 241 SACAQIGALSLGEWVHSLI--KSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPE 296
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 23/183 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ V+ + + +L A + + +G +H F +VYV TAL+ MY
Sbjct: 224 MQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGS 283
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I A ++F+ MPEK+ + WN+M+ + G A+KL D+ S ++ +G +
Sbjct: 284 ITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKL-----FYDMLSSSVKPTGLTFL 338
Query: 121 ----------------GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
G H+ + F P + + ++ AG+++KA E K M
Sbjct: 339 SVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAE--HYACMVDILGRAGQLKKALEFIKAM 396
Query: 165 LVK 167
V+
Sbjct: 397 PVE 399
>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g47840-like [Cucumis
sativus]
Length = 712
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 156/469 (33%), Positives = 249/469 (53%), Gaps = 13/469 (2%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D+Y++ + LKA+ + G +H QT+K GF + +V +L MY +D
Sbjct: 213 VEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGL 272
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMIS---GYA 118
F KM D+++W +++ A+ G+ D ++ M +V +F+ +IS +A
Sbjct: 273 HTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFA 332
Query: 119 RIG---KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
R+ ++H+ V A V NS++ Y+ GE+ ++F M +++ITW+T+
Sbjct: 333 RLKWGEQLHAHVLCVGFVNALSVA--NSIMTLYSKCGELASVSKVFCSMKFRDIITWSTI 390
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
+ Y + E + M++ KP+ + SVLS C ++ LE G ++H + GL
Sbjct: 391 IAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGL 450
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ALI MYAKCGSI ++ ++F S D+ W AMI G A HG+ A++L
Sbjct: 451 EQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFEN 510
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
+ ++ D +TFIG+L+ACSHAG+V G F+ M KD+ +T EHYGCM+DLL RA
Sbjct: 511 IQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAG 570
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L A LI +MP + + + LL AC IH D++ G R A V K + G + A
Sbjct: 571 RLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVL-KLDPNCAGTHITLA 629
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N++A+ G+W+EA R +M G+VK G S ++V S F++G H
Sbjct: 630 NIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSH 678
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 158/331 (47%), Gaps = 8/331 (2%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D + L LK G+ + G LHG ++K G V+V +ALL MY + I + KVF
Sbjct: 115 DPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVF 174
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIH 124
++MP ++ + W +++ G + + M D ++ I + A G ++
Sbjct: 175 DEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALN 234
Query: 125 SARYIFDKVPAK--DVVSW--NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
R I + K D S+ NSL Y G+++ F+KM +V++W T+VT Y+
Sbjct: 235 HGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYI 294
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + F M+A NV P+ T ++V+S CAN L+ G ++H + G +
Sbjct: 295 QMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALS 354
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+++ +Y+KCG + +VF + +D+ W+ +I + GYG A + L M
Sbjct: 355 VANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEG 414
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRM 331
K ++ +LS C ++++G +L + +
Sbjct: 415 PKPNEFALASVLSVCGSMAILEQGKQLHAHV 445
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 125/291 (42%), Gaps = 13/291 (4%)
Query: 52 LKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD----- 106
LK+ + DA +F+++P++D ++W +++ + + A++L M L+
Sbjct: 56 LKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRID 115
Query: 107 --VTSFNIMISG----YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEM 160
+ S + G Y +H + V ++L+ Y GE+ ++ ++
Sbjct: 116 PFLLSLGLKTCGLGLNYLYGTNLHG--FSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKV 173
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
F +M +N +TW ++TG +R+ + F M V+ D L A A+ G+L
Sbjct: 174 FDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGAL 233
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
G IH G N +L MY KCG ++ L F K + DV W ++
Sbjct: 234 NHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAY 293
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
G L+ M S V ++ TF ++S C++ ++ G +L + +
Sbjct: 294 IQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 135/299 (45%), Gaps = 20/299 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ V + Y+F ++ + G LH + GF + V +++ +Y
Sbjct: 309 MRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGE 368
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+ KVF M +DII W++++ A++ G + A + + M P + + ++S
Sbjct: 369 LASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSV 428
Query: 117 YARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ + + + V + + + ++LI+ Y G + +A ++F ++I+W
Sbjct: 429 CGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISW 488
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M++GY E ++LF+ ++ ++PD +T VL+AC++ G ++ G +
Sbjct: 489 TAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLG-----FYYF 543
Query: 233 NGLASNPHATTA------LIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
N ++ + H T + +ID+ + G + + + ++ D W+ ++ +HG
Sbjct: 544 NSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHG 602
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 145/353 (41%), Gaps = 67/353 (18%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165
D+ N + + + AR +FD++P +D VSW ++I Y N+ + +A +F KM
Sbjct: 48 DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKM- 106
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
L+S+L I+ L +K + +YL G
Sbjct: 107 -------------RLQSELRIDPFLLSLGLKTCGLGLNYL----------------YGTN 137
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H ++ GL ++ +AL+DMY K G I +S +VF + ++ W A+I GL GY
Sbjct: 138 LHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGY 197
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR-MEKDF--------G 336
A L M S V+ D + L A + +G + G + ++ ++K F
Sbjct: 198 SEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANS 257
Query: 337 VTRKLEHYGCM---VDLLGRARLLD---------------------RAIELIEAMPFEPT 372
+T G + + + R LD +A + + A P
Sbjct: 258 LTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPN 317
Query: 373 ESILGALLSACVIHQDLEIGDRV-AKMVCAK-SNYLSDGELMMFANLYASCGQ 423
E A++S C L+ G+++ A ++C N LS +M LY+ CG+
Sbjct: 318 EYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIM--TLYSKCGE 368
>gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group]
gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group]
gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group]
gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group]
Length = 661
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 233/418 (55%), Gaps = 7/418 (1%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V T ++K Y CI +A ++F +MP+ + +WN+M S G++D A++L D MP
Sbjct: 215 NVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMP 274
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
K+V S+ IM++G A+ G + AR FD++P KD+ +WNS+I AYTN G++ A +F
Sbjct: 275 HKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDI 334
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M KN++TWN ++ GY + L E + LF M V PD T+ SVL + +
Sbjct: 335 MPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVR-- 392
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+IH +T G + L+ MY++ G + + F + KD W +MI LA H
Sbjct: 393 -QIHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANH 451
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G AL+ +M K TF +LSAC+H GLV++G ++F + +G+ +EH
Sbjct: 452 GCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLGPTIEH 511
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAK 402
Y C+VDLLGRA + A E+++ M + E+ILG LL +C+ H ++E+G V + + K
Sbjct: 512 YSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLV-K 570
Query: 403 SNYLSDGELMMFANLYASCGQWEE-ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ G + AN++AS G W E A+ W+ +M + + KT G S IEVN H F +
Sbjct: 571 IDPSGSGGYTLLANVFASGGMWNEVASVWK-IMKGSKVKKTPGFSQIEVNARNHVFYS 627
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 138/271 (50%), Gaps = 8/271 (2%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C +++ T +L Y +D A ++F+ M K+++AW M+ + G +D A +L DL
Sbjct: 120 CRGIHLDTVMLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDL 179
Query: 102 MPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
MP ++V S+ M+ GYA G + AR +FDK+P ++VV+W ++ AY + G +++A E+F
Sbjct: 180 MPYRNVFSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELF 239
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
+M N +WN M TG + + + V LFD+M NV ++ T +++ A G +
Sbjct: 240 NRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNV----VSWTIMVTGLAQNGFVS 295
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
D + A ++I Y G + + +F K++ WN +I G +
Sbjct: 296 RAREFF----DRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYS 351
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
++ AL+L M S V D T I +L
Sbjct: 352 MNNLKDEALRLFLLMLRSAVSPDSTTLISVL 382
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 24/236 (10%)
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
T +L G ++ R+ D N A T ++ Y + G ++++ +F
Sbjct: 127 TVMLDGYVKAGQVDRARRLF----DGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPY 182
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
++VF W M+ G A +G L+ EM D + + + + ++ A G +QE EL
Sbjct: 183 RNVFSWTTMVQGYAHNGM----LREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALEL 238
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES---ILGALLSACV 384
F+RM + + + M L A +D A++L + MP + S ++ L
Sbjct: 239 FNRMPQMNSYS-----WNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGF 293
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+ + E DR+ K N + Y + GQ +A R ++M +V
Sbjct: 294 VSRAREFFDRMPKKDIPAWNSM--------ITAYTNDGQVNDAQRLFDIMPSKNLV 341
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+HG + K G+ + L+ MY + A+ F ++ EKD I W SM+ A A+ G
Sbjct: 394 IHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGC 453
Query: 92 MDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKV 133
A++ M T+F ++S +G + R IF +
Sbjct: 454 APCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSI 499
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 165/504 (32%), Positives = 255/504 (50%), Gaps = 41/504 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D+ ++ L A L S G LH + I++ YV +AL+++Y
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320
Query: 61 IDDAFKVFEKMPEKDIIAWNSML------DAFASC----GQMDHAMKLIDLMPLKDVTS- 109
+A +VF + +++ ++W ++ + F+ QM + ID L + S
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380
Query: 110 -FNIM---------------------------ISGYARIGKIHSARYIFDKVPAKDVVSW 141
FN M IS YA+ G + +A ++F + +D+VSW
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNV 200
S+I AY+ G + KA E F M +N ITWN M+ Y++ + + ++ M +V
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD++T ++ CA++G+ + G +I + GL N A I MY+KCG I ++ +
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQK 560
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+F KDV WNAMI G + HG G A K +M K D I+++ +LS CSH+GL
Sbjct: 561 LFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGL 620
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
VQEG F M + G++ LEH+ CMVDLLGRA L A +LI+ MP +PT + GALL
Sbjct: 621 VQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 680
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
SAC IH + E+ + AK V + + G M+ A +Y+ G+ +++ + R +M D GI
Sbjct: 681 SACKIHGNDELAELAAKHV-FELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIK 739
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S +EV H F A + H
Sbjct: 740 KNPGYSWMEVENKVHVFKADDVSH 763
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 148/302 (49%), Gaps = 12/302 (3%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
++ + ++L Y L ID A + FE M E+D+++WN M+ A + G++ A+ L+ M
Sbjct: 204 IFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHR 263
Query: 105 K----DVTSFNIMISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEK 156
K D T++ ++ AR+ + + + KV P D ++LI Y G ++
Sbjct: 264 KGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKE 323
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F + +N ++W ++ G L+ + + + V+LF++M+A + D + +++S C N
Sbjct: 324 AKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 383
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
L G ++H +G + +LI +YAKCG ++ + VF +D+ W +M
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
I + G A + M+ + IT+ +L A G ++G +++S M
Sbjct: 444 ITAYSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 499
Query: 337 VT 338
VT
Sbjct: 500 VT 501
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 145/356 (40%), Gaps = 72/356 (20%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGS----------LRC--------------------- 60
LHG+ + G V++Q LL Y S LR
Sbjct: 26 LHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQG 85
Query: 61 -IDDAFKVFEKMPEKDIIAWNSML---------------------------DAFASCGQM 92
+ DA ++F++MP +D+ +WN+++ +AF C M
Sbjct: 86 SLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVM 145
Query: 93 DH--AMKLIDLMP-----------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
A+ +L P D ++ + R G + A +F ++ +
Sbjct: 146 KSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIF 205
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
NS++ Y ++ A E F+ M ++V++WN M+ +S E + L EM
Sbjct: 206 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG 265
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V+ D T TS L+ACA L SL G ++H + +P+ +ALI++YAKCGS +++
Sbjct: 266 VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAK 325
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
VF Q ++ W +I G + +++L +M + D L+S C
Sbjct: 326 RVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 150/333 (45%), Gaps = 41/333 (12%)
Query: 111 NIMISGYARIGKIHSARYIFD-KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
N ++ Y G + AR + + +V++ N ++ Y G + A E+F +M ++V
Sbjct: 43 NTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 102
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
+WNT+++GY +++ +++ ++ F M ++G+ P+ T V+ +C LG E ++
Sbjct: 103 ASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLG 162
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA-LHGYGY 287
+P TAL+DM+ +CG ++ + +F + + +FC N+M+ G A L+G +
Sbjct: 163 LFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDH 222
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
A E + + D +++ +++A S +G V+E L M + GV +L+
Sbjct: 223 AI-----EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK-GV--RLDSTTYT 274
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
L ARL G L A VI +I VA +
Sbjct: 275 SSLTACARLFSLG---------------WGKQLHAKVIRSLPQIDPYVASALI------- 312
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
LYA CG ++EA R N + D V
Sbjct: 313 --------ELYAKCGSFKEAKRVFNSLQDRNSV 337
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 209/358 (58%), Gaps = 6/358 (1%)
Query: 111 NIMISGYARIGKIHSARYI-FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
N ++ Y +G + AR + + A DVVSWN+++ Y G++ A E+F +M +N+
Sbjct: 117 NSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNL 176
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
++W+ MV +R+ + E + +FD M +PD + + SVL ACA+LG++E G +H Y
Sbjct: 177 VSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRY 236
Query: 230 ---ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
+ G N TAL+DMY KCG +E + +VF +DV WNAMI GLA++GYG
Sbjct: 237 LETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYG 296
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL+L M ++ TFI +L AC+H G V EG +F M+ D+G+ + EHYGC
Sbjct: 297 ERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ-DYGIKPQREHYGC 355
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
+ DLLGRA ++ A L+ MP EP S GAL+S+C +H D+ +G+RV K + Y
Sbjct: 356 LADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPY- 414
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ NLYA G+WEEA R MM D G K G S IE+NG H+F++G H
Sbjct: 415 DGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRH 472
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 43/265 (16%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKV-FEKMPEKDIIAWNSMLDAFASCGQMDHA 95
K G H V +LLK+Y SL +D A +V + D+++WN+M+ + G + A
Sbjct: 105 FKCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAA 164
Query: 96 MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----DVV------------ 139
++ MP +++ S++ M+ R G+ A ++FD++ + DVV
Sbjct: 165 REVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHL 224
Query: 140 ------SW--------------------NSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
W +L+ Y G ME A ++F + ++V+ WN
Sbjct: 225 GAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWN 284
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
M+ G + ++LF M P+ T +VL AC + G ++ G R+ D
Sbjct: 285 AMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDY 344
Query: 234 GLASNPHATTALIDMYAKCGSIEQS 258
G+ L D+ + G++E++
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEA 369
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 237/451 (52%), Gaps = 55/451 (12%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ D +++P L+KA + G+ HG ++ G G V+V T+L+ +YG
Sbjct: 162 MKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGK--- 218
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
CG++ A K+ D M ++V S+ MI+GYA
Sbjct: 219 ----------------------------CGEILCARKVFDEMGERNVVSWTAMIAGYASF 250
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN--VITWNTMVTG 178
+ AR +FD++P K+ VSWN++I Y G++ A +MF +M +N V+ W+ +++
Sbjct: 251 SDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALIS- 309
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL-AS 237
GNVKPD + S++SAC+ +GSLE + Y + +
Sbjct: 310 -------------------GNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVH 350
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
H ALIDM AKCGS++++ ++F + +D+ + +M+ GL++HG G A+ L M
Sbjct: 351 RAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRML 410
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
+ + DD+ F +L+ACS AGLV EGC F M+ D+ + +HY CMVDLLGRA L
Sbjct: 411 NEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRL 470
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
A EL+++MP EP GALL AC +H D+E+G+ VA + + + G ++ +N+
Sbjct: 471 KEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQL-FELEPQNAGNYVLLSNI 529
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
YA+ QW + + RN M + GI K G S I
Sbjct: 530 YAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 560
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 115/294 (39%), Gaps = 51/294 (17%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F + + + WNT + GY + V LF MK + PD T S++ AC+ +
Sbjct: 127 VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 186
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
++ G H A G+ + T+LID+Y KCG I + +VF + ++V W AMI G
Sbjct: 187 VKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAG 246
Query: 280 LALHGYGYAALKLLGEMND--------------SC------------------------- 300
A A KL EM + C
Sbjct: 247 YASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSA 306
Query: 301 -----VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
VK D+ + L+SACS G ++ + + K + ++D+ +
Sbjct: 307 LISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCG 366
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
+DRA +L E MP L+S C + Q L I + V S L++G
Sbjct: 367 SMDRATKLFEEMPKRD-------LISYCSMMQGLSIHGCGPQAVSLFSRMLNEG 413
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 163/484 (33%), Positives = 268/484 (55%), Gaps = 24/484 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++L ++ SFP +KA L G H Q G+ ++V +AL+ MY +
Sbjct: 67 MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL----------------IDLMPL 104
++DA KVF+++P+++I++W SM+ + G A+ L +D M L
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGL 186
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE--MEKAGEMFK 162
V S + IHS ++ + + V N+L+ AY GE + A ++F
Sbjct: 187 VSVISACSRVPAKGLTESIHS--FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFD 244
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLE 221
+++ K+ +++N++++ Y +S + E ++F + K V + +T+++VL A ++ G+L
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALR 304
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G IH GL + T++IDMY KCG +E + + F + + K+V W AMI G
Sbjct: 305 IGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYG 364
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+HG+ AL+L M DS V+ + ITF+ +L+ACSHAGL EG F+ M+ FGV L
Sbjct: 365 MHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGL 424
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVC 400
EHYGCMVDLLGRA L +A +LI+ M +P I +LL+AC IH+++E+ + VA++
Sbjct: 425 EHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFE 484
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
S+ G M+ +++YA G+W++ R R +M + G+VK G S++E+NG H FL G
Sbjct: 485 LDSSNC--GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIG 542
Query: 461 GIGH 464
H
Sbjct: 543 DEEH 546
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 127/278 (45%), Gaps = 22/278 (7%)
Query: 67 VFEKMPEK-DIIAWNSMLDAFASCGQMDHA------MKLIDLMPLKDVTSFNIMISGYAR 119
+F + +K D+ +WNS++ A G A M+ + L P + +SF I +
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTR--SSFPCAIKACSS 88
Query: 120 IGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ I S + + D+ ++LI+ Y+ G++E A ++F ++ +N+++W +M
Sbjct: 89 LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKP------DYLTVTSVLSACANLGSLETGARIHVY 229
+ GY + ++ V LF ++ D + + SV+SAC+ + + IH +
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208
Query: 230 ATDNGLASNPHATTALIDMYAKCGS--IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
G L+D YAK G + + ++F + KD +N+++ A G
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268
Query: 288 AALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEG 324
A ++ + + V + IT +L A SH+G ++ G
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG 306
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S +L E + +F + + K +V +WN+++ RS E + F M+ ++
Sbjct: 14 SRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLY 73
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P + + AC++L + +G + H A G S+ ++ALI MY+ CG +E + +V
Sbjct: 74 PTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKV 133
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM------NDSCVKADDITFIGLLSAC 315
F + +++ W +MI G L+G A+ L ++ +D + D + + ++SAC
Sbjct: 134 FDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193
Query: 316 SH 317
S
Sbjct: 194 SR 195
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 240/443 (54%), Gaps = 28/443 (6%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF--KVFEKMPEKDIIAWNSMLDAFASC 89
+HGQ +KTG + LL S A+ VF+++ + WN+M+ +++
Sbjct: 37 IHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNS 96
Query: 90 GQMDHAMKLIDLMPLKDVT----SFNIMISGYARIGKIHSARYIFDKVP----AKDVVSW 141
+ + A+ L M V +F ++ + + + + I + ++ +
Sbjct: 97 KEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTT 156
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
NSL+ Y+ +G+++ A +F ++ Q E ++LF M+ +K
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQV-----------------DQRDTEALNLFHRMQTAGIK 199
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D + + S L ACA+LG L+ G IH Y + + +P LIDMYAKCG +E+++EV
Sbjct: 200 LDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEV 259
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K + K V W AMI G A+HG G AL+ +M + V+ + +TF G+L+ACSHAGLV
Sbjct: 260 FRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLV 319
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
E LF ME+ G +EHYGCMVDLLGRA LL A ELIE MP +P +I GALL+
Sbjct: 320 HEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLN 379
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH +LE+G ++ K++ + + G + A+++A+ G+W +A R R M + G+ K
Sbjct: 380 ACHIHGNLELGKQIGKILI-QVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSK 438
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
G SVI VNG+ H+FLAG H
Sbjct: 439 LPGCSVISVNGTAHEFLAGDESH 461
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 25/288 (8%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V + Y+FP LLKA +S+ +H IK GF +Y +LL +Y I A
Sbjct: 114 VPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSAR 173
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK-IH 124
+F+++ ++D A N + ++D+ + L D+ G GK IH
Sbjct: 174 LLFDQVDQRDTEALNLFHRMQTAGIKLDNVALVSTLQACADL--------GVLDQGKWIH 225
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+ YI D + LI Y G++E+A E+F+KM K V W M++GY
Sbjct: 226 A--YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGR 283
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL-------ETGARIHVYATDNGLAS 237
E ++ F +M+ V+P+ +T T +L+AC++ G + E+ RIH G
Sbjct: 284 GREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH------GFKP 337
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
+ ++D+ + G ++++ E+ VK + W A++ +HG
Sbjct: 338 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 385
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 157/451 (34%), Positives = 249/451 (55%), Gaps = 21/451 (4%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G+++H IK G V+V AL+ MY + DA +VF+ M +D+++WNS++ A+
Sbjct: 267 GVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQ 326
Query: 89 CGQMDHAMKLI----------DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDV 138
A+ DL+ + + S +S RIG+ + + D+
Sbjct: 327 NDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSD-RRIGRAVHGFVVRCRWLEVDI 385
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
V N+L+ Y G ++ A +F+++ ++VI+WNT++TGY ++ L E +D ++ M+ G
Sbjct: 386 VIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEG 445
Query: 199 N-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ P+ T S+L A +++G+L+ G +IH N L + T LIDMY KCG +E
Sbjct: 446 RTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLED 505
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
++ +FY+ + WNA+I L +HG+G AL+L +M VKAD ITF+ LLSACSH
Sbjct: 506 AMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSH 565
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+GLV E F M+K++ + L+HYGCMVDL GRA L++A L+ MP + SI G
Sbjct: 566 SGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWG 625
Query: 378 ALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
LL+AC IH + E+G DR+ ++ Y ++ +N+YA+ G+WE A + R++
Sbjct: 626 TLLAACRIHGNAELGTFASDRLLEVDSENVGY-----YVLLSNIYANVGKWEGAVKVRSL 680
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
D G+ KT G S + V F AG H
Sbjct: 681 ARDRGLRKTPGWSSVVVGSVVEVFYAGNQSH 711
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 194/398 (48%), Gaps = 27/398 (6%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D Y+FP +LKA L+ G +H +K GF VYV +L+ +Y ++ A
Sbjct: 145 GVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVA 201
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI---- 120
KVF MP +D+ +WN+M+ F G + A++++D M ++V + +S I
Sbjct: 202 HKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQS 261
Query: 121 ----GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
G + Y+ DV N+LI Y+ G ++ A +F M V+++++WN+++
Sbjct: 262 NDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSII 321
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NGL 235
Y ++ + + F EM ++PD LTV S+ S L G +H + L
Sbjct: 322 AAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWL 381
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ AL++MYAK GSI+ + VF + +DV WN +I G A +G A+
Sbjct: 382 EVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNM 441
Query: 296 MND-SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD------FGVTRKLEHYGCMV 348
M + + + T++ +L A SH G +Q+G ++ R+ K+ F T C++
Sbjct: 442 MEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVAT-------CLI 494
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
D+ G+ L+ A+ L +P E T A++S+ IH
Sbjct: 495 DMYGKCGRLEDAMSLFYEIPQE-TSVPWNAIISSLGIH 531
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 10/294 (3%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
+ LH + G V + T L+ +Y +L + + F+ + K+I +WNSM+ A+
Sbjct: 66 VAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYV 125
Query: 88 SCGQ----MDHAMKLIDLMPLK-DVTSFNIMISGYARIG---KIHSARYIFDKVPAKDVV 139
G+ MD +L+ L ++ D +F ++ + K+H ++ DV
Sbjct: 126 RRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHC--WVLKMGFEHDVY 183
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
SLI Y+ G +E A ++F M V++V +WN M++G+ ++ E + + D MK
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEE 243
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
VK D +TV+S+L CA + G +H+Y +GL S+ + ALI+MY+K G ++ +
Sbjct: 244 VKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQ 303
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
VF +V+D+ WN++I + AL EM ++ D +T + L S
Sbjct: 304 RVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLAS 357
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 9/219 (4%)
Query: 110 FNIMISGYARIG---KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
FN++ I ++H+ + K A+DVV L+ Y G++ + FK +
Sbjct: 54 FNLVFRSCTNINVAKQLHALLLVLGK--AQDVVLLTQLVTLYATLGDLSLSSTTFKHIQR 111
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGAR 225
KN+ +WN+MV+ Y+R Y + +D E+ + V+PD+ T VL AC SL G +
Sbjct: 112 KNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEK 168
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H + G + + +LI +Y++ G++E + +VF V+DV WNAMI G +G
Sbjct: 169 MHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGN 228
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
AL++L M VK D +T +L C+ + V G
Sbjct: 229 VAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGG 267
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 258/472 (54%), Gaps = 10/472 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG D ++ +L + G L + G +H TIK + +V+ L+ MY
Sbjct: 230 MNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNL 289
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+ DA KVF+ M E+++I++N+M++ ++S ++ A++L M ++ + +F ++
Sbjct: 290 LXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGV 349
Query: 117 YARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + + ++ I + + D+ + ++LI Y+ ++ A +F++M K+++ W
Sbjct: 350 SASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVW 409
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M GY + E + L+ ++ KP+ T ++++A +NL SL G + H
Sbjct: 410 NAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVK 469
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
GL P T AL+DMYAKCGSIE++ ++F S +DV CWN+MI A HG AL +
Sbjct: 470 MGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGM 529
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM ++ + +TF+ +LSACSHAG V++G F+ M FG+ EHY C+V LLG
Sbjct: 530 FREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLG 588
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R+ L A E IE MP EP + +LLSAC I ++E+G A+M + ++ G +
Sbjct: 589 RSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAIS-TDPKDSGSYI 647
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N++AS G W + + R+ M+ + +VK G S IEVN + F+A H
Sbjct: 648 LLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARXTTH 699
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/505 (26%), Positives = 221/505 (43%), Gaps = 87/505 (17%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G H + + +++A L G LHG +++GF VYV T+L+ Y I+ A
Sbjct: 32 GEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVA 91
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG-------- 116
VF+++ EK + W +++ + CG+ +++L M +V ++S
Sbjct: 92 RLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSML 151
Query: 117 -YARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
+ GK IH+ Y+ + DV N LI YT ++ ++F +M+VKN+I+W T
Sbjct: 152 EFLEGGKQIHA--YVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTT 209
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M++GY+++ E + LF EM KPD TSVL++C +L +LE G ++H Y
Sbjct: 210 MISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKAN 269
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L SN LIDMYAK + + +VF ++V +NAMI G + AL+L
Sbjct: 270 LESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFH 329
Query: 295 EMNDSCVKADDITFIGLLSACS-----------HAGLVQEGCEL---------------- 327
EM +TF+ LL + H +++ G L
Sbjct: 330 EMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCS 389
Query: 328 --------FSRM-EKD--------FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF- 369
F M EKD FG T+ LE+ + A++L + F
Sbjct: 390 YVKDARHVFEEMNEKDIVVWNAMFFGYTQHLEN--------------EEALKLYSTLQFS 435
Query: 370 --EPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
+P E AL++A L G +++ KM ++++ ++YA CG
Sbjct: 436 RQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNA----LVDMYAKCGS 491
Query: 424 WEEANR------WRNMMNDTGIVKT 442
EEA + WR+++ ++ T
Sbjct: 492 IEEARKMFNSSIWRDVVCWNSMIST 516
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 157/341 (46%), Gaps = 8/341 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E V D Y +L A +L G +H ++ G V V L+ Y
Sbjct: 129 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNR 188
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISG 116
+ K+F++M K+II+W +M+ + AMKL M D + +++
Sbjct: 189 VKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTS 248
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ + R + ++ S N LI Y + + A ++F M +NVI++
Sbjct: 249 CGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISY 308
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY + E ++LF EM+ P LT S+L A+L +LE +IH
Sbjct: 309 NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIK 368
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G++ + A +ALID+Y+KC ++ + VF + KD+ WNAM G H ALKL
Sbjct: 369 XGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKL 428
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+ S K ++ TF L++A S+ ++ G + +++ K
Sbjct: 429 YSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVK 469
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 15/161 (9%)
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
GY L + VDL + K+G P+ + SV+ AC LG +E GA++H + +G
Sbjct: 15 GYSEEALMV-FVDL--QRKSGE-HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQ 70
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ + T+LID Y+K G IE + VF + K W +I G G +L+L +M
Sbjct: 71 DVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMR 130
Query: 298 DSCVKADDITFIGLLSACS-----------HAGLVQEGCEL 327
++ V D +LSACS HA +++ G E+
Sbjct: 131 ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM 171
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 158/475 (33%), Positives = 243/475 (51%), Gaps = 67/475 (14%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDA------ 85
+H I TG H Y + +L + S A +F +P I +N+++ +
Sbjct: 28 VHAHMITTGLIFHTYPLSRIL-LISSTIVFTHALSIFNHIPNPTIFLYNTLISSLANIKP 86
Query: 86 ----------------------------FASCGQMD--------HAMKLIDLMPLKDVTS 109
F +CG H L L P D
Sbjct: 87 HTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDPFV 146
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+++ YA+ GK+ + RY+F+++ D+ SWNS++ AY + +G + + +
Sbjct: 147 QAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVH-----NSGAICEDV----- 196
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
L +EV+ LF EM+ +K + +T+ +++SACA LG+L GA HVY
Sbjct: 197 -------------SLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVY 243
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ L N TALIDMY+KCG ++ + ++F + +D C+NAMI G A+HGYG+ A
Sbjct: 244 VLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQA 303
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L L +M + DD+T + + +CSH GLV+EGC++F M++ +GV KLEHYGC+VD
Sbjct: 304 LDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVD 363
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA L A E + MP +P I +LL A +H +LEIG+ V K + S G
Sbjct: 364 LLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETS-G 422
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YAS +W++ R R +M D GI K GSS++EV G+ H+FL G H
Sbjct: 423 NYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTH 477
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 10/186 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ + A+ + L+ A L + G H +K + +V TAL+ MY C
Sbjct: 209 MQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGC 268
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A ++F+++P +D + +N+M+ FA G A+ L M L+ D + + +
Sbjct: 269 LDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCS 328
Query: 117 YARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ +G + +F+ + + + L+ AG + +A E M +K N +
Sbjct: 329 CSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAV 388
Query: 171 TWNTMV 176
W +++
Sbjct: 389 IWRSLL 394
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/479 (32%), Positives = 251/479 (52%), Gaps = 44/479 (9%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H + + GF + V TAL+ MYG +A +VF+KM ++D+++WN M+ +
Sbjct: 226 GRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVL 285
Query: 89 CGQMDHAMKL---IDLMPLKDVTSFNIMISG----------------------------- 116
G A++L +D+ K + + I G
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAV 345
Query: 117 -------YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG---EMEKAGEMFKKMLV 166
YA+ G + AR +F+ + +D V+W++LI AY + G + KA ++F ++
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGS 405
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLETGAR 225
++ I+WN M+T Y+++ + + +F EM A +KPD +T +VL ACA+LG L
Sbjct: 406 RDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKA 465
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H +++ L SN T LI+MYA+CGS+E++ +F ++ K V W AM+ + +G
Sbjct: 466 LHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGR 525
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
AL L EM+ VK DD+T+ +L C+H G +++G F+ M + + +H+
Sbjct: 526 YAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFA 585
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
MVDLLGR+ L A EL+E+MPFEP L+AC IH LE+G+ A+ V + +
Sbjct: 586 AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERV-YELDP 644
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S + +N+YA+ G WE+ R M + G+ K G S IEV+G H+F +GG H
Sbjct: 645 SSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYH 703
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 175/367 (47%), Gaps = 49/367 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ D+ +F +L G SS G +H + +G + AL+ MY
Sbjct: 101 MNLQGLGTDHVTFVSVL---GACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGS 157
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSFNIMIS 115
+ DA ++F+ + +D +WN+++ A + G A+++ D+ P + T++ +IS
Sbjct: 158 VGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKP--NSTTYINVIS 215
Query: 116 GYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
G++ + R I ++ A D+V +LI Y G +A E+F KM +++++
Sbjct: 216 GFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVS 275
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN M+ Y+ + + E ++L+ ++ K T S+L AC+++ +L G +H +
Sbjct: 276 WNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHIL 335
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG----- 286
+ GL S TAL++MYAKCGS+E++ +VF + +D W+ +I A +GYG
Sbjct: 336 ERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARK 395
Query: 287 -----------------------------YAALKLLGEMNDSC-VKADDITFIGLLSACS 316
AA+K+ EM + +K D +TFI +L AC+
Sbjct: 396 ARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455
Query: 317 HAGLVQE 323
G + E
Sbjct: 456 SLGRLSE 462
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 178/368 (48%), Gaps = 9/368 (2%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
DN +F +L + G LH + + F V AL+ MYG + DA
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63
Query: 67 VFEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-TSFNIMISGYARIGKI 123
VFE M ++++++WN+M+ A+A G A+ L M L+ + T +S +
Sbjct: 64 VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123
Query: 124 HSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
R I ++V + S+ N+L+ Y G + A MF+ + ++ +WN ++ +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+S + + +F EMK +VKP+ T +V+S + L G +IH NG ++
Sbjct: 184 SQSGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDL 242
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
TALI+MY KCGS ++ EVF K + +D+ WN MI L+G + AL+L +++
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDME 302
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K TF+ +L ACS + +G + S + + G+ ++ +V++ + L+
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHI-LERGLDSEVAVATALVNMYAKCGSLEE 361
Query: 360 AIELIEAM 367
A ++ AM
Sbjct: 362 ARKVFNAM 369
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 161/387 (41%), Gaps = 57/387 (14%)
Query: 99 IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEM 154
+D P D +F ++ + G + R + +++ +D + N+LI Y +
Sbjct: 1 MDRQP--DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSL 58
Query: 155 EKAGEMFKKM--LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
A +F+ M +NV++WN M+ Y ++ E + L+ M + D++T SVL
Sbjct: 59 VDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLG 118
Query: 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC 272
AC+ SL G IH +GL S AL+ MYA+ GS+ + +F Q +D
Sbjct: 119 ACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS 175
Query: 273 WNAMILGLALHGYGYAALKLLGEMNDSC-VKADDITFIGLLSACS-----------HAGL 320
WNA+IL + G AL++ EM C VK + T+I ++S S HA +
Sbjct: 176 WNAVILAHSQSGDWSGALRIFKEMK--CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEI 233
Query: 321 V------------------------QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
V E E+F +M+K R + + M+
Sbjct: 234 VANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKK-----RDMVSWNVMIGCYVLNGD 288
Query: 357 LDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
A+EL + + F+ T++ ++L AC + L G V + +
Sbjct: 289 FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348
Query: 414 FANLYASCGQWEEANRWRNMMNDTGIV 440
N+YA CG EEA + N M + V
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAV 375
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 108/271 (39%), Gaps = 40/271 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D +F +L+A L LH Q ++ +V V L+ MY +++A
Sbjct: 439 GLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEA 498
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
++F EK +++W +M+ AF+ G+ A+ L M L+ V
Sbjct: 499 ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKP--------------- 543
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTMVTGY 179
D V++ S++ T+ G +E+ F M L + MV
Sbjct: 544 ------------DDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLL 591
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG--ARIHVYATDNGLAS 237
RS + +L + M +PD + + L+AC G LE G A VY D S
Sbjct: 592 GRSGRLFDAKELLESMP---FEPDPVAWMTFLTACRIHGKLELGEAAAERVYELD---PS 645
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
+ A+ ++YA G E+ V K + +
Sbjct: 646 STAPYIAMSNIYAAHGMWEKVASVRKKMEER 676
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 206/325 (63%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
+ D ++ P ++K L ++ G +HG +K GF + +V ++L+ MY + ID A K
Sbjct: 104 NPDGFTLPCVIKGCARLHATKEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKK 163
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF M +KD+++WNS++D + CGQ++ MKL + MP +D+ S+ ++I G+++ GK+ A
Sbjct: 164 VFLSMDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMPERDLFSWTVLIDGFSKCGKVDVA 223
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
R +FDK+P++++VSWN++I Y AG+ A E+F KM KN+I+WN+MV GY ++ +
Sbjct: 224 RELFDKMPSRNLVSWNAMINGYMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFK 283
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
E +DLF M + P++ T+ S SA + L SL TG +H Y NG + T+LI
Sbjct: 284 EALDLFLTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLI 343
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
+MY+KCG+IE +L VF K + W A+I+GL +HG AL+ EM + ++ I
Sbjct: 344 NMYSKCGNIESALSVFQLITKKKLGHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHAI 403
Query: 307 TFIGLLSACSHAGLVQEGCELFSRM 331
TFIG+L+ACSHAGLV++G + F M
Sbjct: 404 TFIGVLNACSHAGLVEDGRKYFDMM 428
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 10/224 (4%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+ A +E +F K+ ++ +N ++ Y+++QL + + LF ++ PD
Sbjct: 49 LYAEPKINNLEYVLSIFNKIQEPALVLYNILIKCYIQNQLSHDAITLFSQL-LHEFNPDG 107
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T+ V+ CA L + + G +IH G N +++L++MY+KC I+ + +VF
Sbjct: 108 FTLPCVIKGCARLHATKEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLS 167
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
KD+ WN++I G G +KL EM + D ++ L+ S G V
Sbjct: 168 MDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMPER----DLFSWTVLIDGFSKCGKVDVA 223
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
ELF +M +R L + M++ +A A EL + MP
Sbjct: 224 RELFDKMP-----SRNLVSWNAMINGYMKAGDFVLASELFDKMP 262
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 90/425 (21%), Positives = 160/425 (37%), Gaps = 112/425 (26%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRC--IDDAFKVFEKMPEKDIIAWNSML------ 83
LH ++KT H + + LL +Y + ++ +F K+ E ++ +N ++
Sbjct: 27 LHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFNKIQEPALVLYNILIKCYIQN 86
Query: 84 ----DAFASCGQMDHAM-----------------------KLIDLMPLKDVTSFNIMISG 116
DA Q+ H K I + LK N +S
Sbjct: 87 QLSHDAITLFSQLLHEFNPDGFTLPCVIKGCARLHATKEGKQIHGLVLKLGFGLNKFVSS 146
Query: 117 -----YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
Y++ I SA+ +F + KD+VSWNSLI Y G++E ++F++M +++ +
Sbjct: 147 SLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMPERDLFS 206
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W ++ G+ + +LFD+M + N+
Sbjct: 207 WTVLIDGFSKCGKVDVARELFDKMPSRNLV------------------------------ 236
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ A+I+ Y K G + E+F K K++ WN+M+ G L+ AL
Sbjct: 237 ---------SWNAMINGYMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALD 287
Query: 292 LLGEMNDSCVKADDITFIGLLSACS-----------HAGLVQEGCEL-----------FS 329
L M + + T + SA S H+ +V+ G +L +S
Sbjct: 288 LFLTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYS 347
Query: 330 R---MEKDFGV-----TRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGA 378
+ +E V +KL H+ ++ LG + D A+E M P
Sbjct: 348 KCGNIESALSVFQLITKKKLGHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHAITFIG 407
Query: 379 LLSAC 383
+L+AC
Sbjct: 408 VLNAC 412
>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
Length = 664
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 231/422 (54%), Gaps = 6/422 (1%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V T+++ Y + + + +F+KMPE+++++W +M+ FA G A+ +
Sbjct: 230 NVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALNSMSY-- 287
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ S N MI+GY RIG++ A+ +FD +P +D +SW S+I Y N G++ KA +F
Sbjct: 288 --NTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNN 345
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
M ++ + W MV+G+++++L+ E LF EM+ V P T + +L A + L+ G
Sbjct: 346 MPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQG 405
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
+ H + +LI MYAKCG I + +F K +D+ WN+MI+G + H
Sbjct: 406 RQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHH 465
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
G ALK+ M S + +TF+G+LSACSHAGL+ +G ELF M F + +LEH
Sbjct: 466 GLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEH 525
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ-DLEIGDRVAKMVCAK 402
Y CMV+LLGRA ++ A E I +PFEP +I GALL C + + R AK + +
Sbjct: 526 YVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLL-E 584
Query: 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
+ L+ ++ N++AS GQ E + R M G+ K G S I + G + FL+G
Sbjct: 585 LDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDR 644
Query: 463 GH 464
H
Sbjct: 645 IH 646
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 155/316 (49%), Gaps = 31/316 (9%)
Query: 40 GFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI 99
G V T+LL + ID+A +FE MPE++++ +N+ML + CG++ A +
Sbjct: 71 GVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFF 130
Query: 100 DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGE 159
+ MP ++V S+ ++ G A G+I AR +F+ +P ++VVSWNS+++ +G++E+A
Sbjct: 131 EEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARR 190
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F +M VK+ ++WN M+ GY E LFD M NV +T TS++S G+
Sbjct: 191 VFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNV----VTWTSMISGYCRAGN 246
Query: 220 LETG----------------ARIHVYATD-------NGLASNPHATTALIDMYAKCGSIE 256
++ G A I +A + N ++ N + ++I+ Y + G +E
Sbjct: 247 VQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALNSMSYNTQSCNSMINGYIRIGQLE 306
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
++ +F V+D W +MI G G A L M D D + + ++S
Sbjct: 307 KAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDR----DAVAWTVMVSGHV 362
Query: 317 HAGLVQEGCELFSRME 332
L E LFS M
Sbjct: 363 QNELFAEATYLFSEMR 378
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 14/188 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV N +F +LL AAG ++ G H +KT F + +Q +L+ MY
Sbjct: 377 MRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGE 436
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
I DA+ +F KM +D+I+WNSM+ F+ G A+K+ + M + +F ++S
Sbjct: 437 IGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSA 496
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYT-------NAGEMEKAGEMFKKMLVKNV 169
+ G ++ +FD + DV + + Y AG++E+A E K+ +
Sbjct: 497 CSHAGLLNQGWELFDAM--SDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPD 554
Query: 170 IT-WNTMV 176
+T W ++
Sbjct: 555 LTIWGALL 562
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 35/202 (17%)
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV------------------ 200
EM + ++ V+ W ++++ + ++ E LF+ M NV
Sbjct: 66 EMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSD 125
Query: 201 ---------KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
+ + ++ TS+L AN G + + + + S LI +
Sbjct: 126 ACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLI----R 181
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
G +E++ VF + VK WN MI G A H A L M D V +T+ +
Sbjct: 182 SGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNV----VTWTSM 237
Query: 312 LSACSHAGLVQEGCELFSRMEK 333
+S AG VQEG LF +M +
Sbjct: 238 ISGYCRAGNVQEGYCLFQKMPE 259
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 252/449 (56%), Gaps = 17/449 (3%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G +H IKT + VY++T L+ +Y RC+ DA +V ++MPE+++++W +M+ ++
Sbjct: 496 GQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQ 555
Query: 89 CGQMDHAMKLIDLMPLKDVT----SFNIMI------SGYARIGKIHSARYIFDKVPAKDV 138
G A+ L M + +F ++ SG+ +IHS + +
Sbjct: 556 RGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHS--LVIKTSFESHI 613
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+SL+ Y AG++ +A +F + ++V++ +++GY + L E +DLF ++
Sbjct: 614 FVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQRE 673
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
++ +Y+T SVL+A + L +L+ G ++H + L +LIDMY+KCGS+ S
Sbjct: 674 GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 733
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-DSCVKADDITFIGLLSACSH 317
+F + V WNAM++G + HG G A++L M ++ VK D +TF+ +LS CSH
Sbjct: 734 RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 793
Query: 318 AGLVQEGCELFSRM--EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
G+ G E+F M +KD G ++EHYGC+VDL GRA ++ A E I+ MPFEPT +I
Sbjct: 794 GGMEDRGLEIFYEMVNQKD-GFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAI 852
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435
G+LL AC +HQ++ IG+ VA+ + + + G ++ +NLYAS G+W++ R +M
Sbjct: 853 WGSLLGACRVHQNVHIGEFVARRLLEIESE-NAGNYVILSNLYASAGRWDDVRTVRELMK 911
Query: 436 DTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ ++K G S IE++ + H F A H
Sbjct: 912 EKAVIKEPGRSWIELDQTLHTFHASDRSH 940
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 14/292 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + ++F +L + S +G +H IKT F H++V ++LL MY I +A
Sbjct: 573 GTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEA 632
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM-------ISGY 117
+VF+ +PE+D+++ +++ +A G + A+ L + + + S + +SG
Sbjct: 633 RRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGL 692
Query: 118 ARI--GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
A + G+ + + K+P VV NSLI Y+ G + + +F M + VI+WN M
Sbjct: 693 AALDHGRQVHSHVLRAKLPFY-VVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAM 751
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARI--HVYATD 232
+ GY + L E V+LF MK N VKPD +T +VLS C++ G + G I +
Sbjct: 752 LVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQK 811
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC-WNAMILGLALH 283
+G ++D++ + G +E++ E K + W +++ +H
Sbjct: 812 DGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 863
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%)
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
EM ++ ++ SVL+ C + ++ G R+H + + T LI +Y KC
Sbjct: 467 EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCR 526
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313
+ + V + ++V W AMI G + GY AL L EM S ++ TF +L+
Sbjct: 527 CLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 586
Query: 314 ACSHAGLVQEGCELFS 329
+C+ + Q G ++ S
Sbjct: 587 SCTSSSGFQLGRQIHS 602
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q G+ ++ ++ +L A L++ G +H ++ +V +Q +L+ MY
Sbjct: 670 LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 729
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMIS 115
+ + ++F+ MPE+ +I+WN+ML ++ G A++L LM + D +F ++S
Sbjct: 730 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 789
Query: 116 GYARIGKIHSARYIF-DKVPAKD-----VVSWNSLILAYTNAGEMEKAGEMFKKM 164
G + G IF + V KD + + ++ + AG +E+A E KKM
Sbjct: 790 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKM 844
>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
Length = 822
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/508 (32%), Positives = 260/508 (51%), Gaps = 57/508 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ DN+++P +LKA G G +H + + V AL+ MYG
Sbjct: 266 MVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGK 325
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
+ A +F+K+PE+D ++WNSM+ +AS G + A +L M +D+ +N + G
Sbjct: 326 VGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGG 385
Query: 117 YARIGKIHSA--------------------------RYIFDKVPAKDVVSW--------- 141
Y R G A +I D K++ S+
Sbjct: 386 YLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEV 445
Query: 142 ----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
NSLI Y+ +++ A +F+ M K++I+WN++++G E L EM
Sbjct: 446 DTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLL 505
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYAT------DNGLASNPHATTALIDMYAK 251
++P+Y+T+ SVL CA + +L+ G H Y T D+ L N AL+DMYA+
Sbjct: 506 SGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWN-----ALVDMYAR 560
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
G + ++ VF +D + +MI G + G G AALKL EMN+ +K D IT I +
Sbjct: 561 SGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAV 620
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP 371
LSACSH+GLV +G LF +M +G+T LEH+ CM DL GRA LL++A E+I MP++P
Sbjct: 621 LSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKP 680
Query: 372 TESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRW 430
T ++ L+ AC IH++ EIG+ A K++ K + G ++ AN+YA+ G W + +
Sbjct: 681 TPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPE--NPGYYVLIANMYAAAGCWNKLAKV 738
Query: 431 RNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
R M D G+ K G + ++V + FL
Sbjct: 739 RXFMRDLGVRKAPGCAWVDVGTGFSPFL 766
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 165/399 (41%), Gaps = 50/399 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCI-------GLMLHGQTIKTGFCGHVYVQTALLKMYGSL 58
+HA + S L++ L SSC G LHG I GF H + L+ Y +
Sbjct: 163 LHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAF 222
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS--------- 109
+ DA + E WN ++ ++ G A+ M K +
Sbjct: 223 NLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVL 282
Query: 110 ------------------------------FNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N +IS Y + GK+ AR +FDK+P +D V
Sbjct: 283 KACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAV 342
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVK----NVITWNTMVTGYLRSQLYIEVVDLFDEM 195
SWNS+I Y + G +A E+F M + N+I WNT+ GYLR+ Y ++L +M
Sbjct: 343 SWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQM 402
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
+ D + + L AC+++G + G IH +A + +LI MY++C +
Sbjct: 403 RKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDL 462
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+ + +F + K + WN++I G A LL EM S ++ + +T +L C
Sbjct: 463 KHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLC 522
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+ +Q G E M + L + +VD+ R+
Sbjct: 523 ARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARS 561
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 208/356 (58%), Gaps = 5/356 (1%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+IS Y+ G + AR +FD++P D+ SWNS+I A AG ++ A +F M +NVI+W
Sbjct: 105 LISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISW 164
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMK---AGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+ M+ GY+R Y E + LF EM+ +V+P+ T++ VL+AC LG+LE G H Y
Sbjct: 165 SCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAY 224
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYA 288
G+ + TALIDMYAKCGS+E++ VF KDV W+AMI GLA+HG
Sbjct: 225 IDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEE 284
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
+ L +M + V+ + +TF+ + AC H GLV EG + RM +D+ + ++HYGCMV
Sbjct: 285 CVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMV 344
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DL GRA + A ++++MP EP + GALLS +H D+E + K + + +
Sbjct: 345 DLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLI-ELEPTNS 403
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ +N+YA G+WE+ R++M GI K G S+IEV G H+F G H
Sbjct: 404 GAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSH 459
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 151/330 (45%), Gaps = 47/330 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D ++FP LL++ S +G +H Q ++ G +VQT+L+ MY S
Sbjct: 55 MRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGN 114
Query: 61 IDDAFKVFEK-------------------------------MPEKDIIAWNSMLDAFASC 89
+ A +VF++ MPE+++I+W+ M++ + C
Sbjct: 115 LGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRC 174
Query: 90 GQMDHAMKL---IDLMPLKDVTSFNIMISGY----ARIGKIHSARY---IFDK--VPAKD 137
GQ A+ L + ++ + DV +SG R+G + ++ DK +P D
Sbjct: 175 GQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPV-D 233
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
VV +LI Y G +EKA +F + K+V+ W+ M++G L E V LF +M
Sbjct: 234 VVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMI 293
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGA-RIHVYATDNGLASNPHATTALIDMYAKCGSI 255
V+P+ +T +V AC + G + G + D + ++D+Y + G I
Sbjct: 294 NQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRI 353
Query: 256 EQSLEVFYKSQVK-DVFCWNAMILGLALHG 284
+++ V ++ DV W A++ G +HG
Sbjct: 354 KEAWNVVKSMPMEPDVLVWGALLSGSRMHG 383
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 110/270 (40%), Gaps = 55/270 (20%)
Query: 172 WNTMVTGYLRSQLYI-----EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
WNT++ +++++ + +F M+ V+PD+ T +L + A+ L G +
Sbjct: 27 WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H GLA +P T+LI MY+ CG++ + +VF + D+ WN++I
Sbjct: 87 HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSII--------- 137
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
+A AGLV LF+ M + R + + C
Sbjct: 138 --------------------------NANFQAGLVDMARNLFAVMPE-----RNVISWSC 166
Query: 347 MVDLLGR------ARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV- 399
M++ R A L R ++++ P E + +L+AC LE G +
Sbjct: 167 MINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYID 226
Query: 400 -CAKSNYLSDGELMMFANLYASCGQWEEAN 428
C + G ++ ++YA CG E+A
Sbjct: 227 KCGMPVDVVLGTALI--DMYAKCGSVEKAT 254
>gi|359491277|ref|XP_003634255.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g22760-like [Vitis vinifera]
Length = 583
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/471 (33%), Positives = 258/471 (54%), Gaps = 32/471 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH---VYVQTALL----- 52
MQ G+ ++ LKA + L +HGQ K GFCG +Y++TAL+
Sbjct: 84 MQRWGLCPTTFALSSALKACDRIVYRMGVLSIHGQVQKFGFCGGGDGIYMETALVDFDCK 143
Query: 53 --------KMY----------GSLRCIDDAF--KVFEKMPEKDIIAWNSMLDAFASCGQM 92
KM+ G L+ D A +VF+++P+KD+I+WNSM +A G +
Sbjct: 144 LGDMEISSKMFDEXGWHSMLAGCLKSGDLAVAQRVFDEIPQKDVISWNSMFSXYARSGDL 203
Query: 93 DHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152
+ A L MP ++ S+N MI+GY G + SAR FD +P ++ SW ++I Y+ G
Sbjct: 204 EKASSLFQQMPERNFASWNAMINGYVEFGDLESARSFFDAMPQRNSASWMTMISGYSKCG 263
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLTVTSV 210
+++ A E+F ++ K+++ +N ++ Y ++ E + LF+ M NV+PD +T+ SV
Sbjct: 264 DVDSACELFDQVGGKDLLLFNAVIACYAQNSKLKEALKLFNMMLHPNVNVQPDEMTLASV 323
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
+S C+ G G I Y G+ + TAL+D+YA CGSI+++ E+F+ + KD+
Sbjct: 324 ISPCSQFGDFRFGPWIESYMRRLGVEMDGRLGTALLDLYAXCGSIDKAYELFHGLRKKDL 383
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
+ AMILG ++G A+KL EM D+ + + I F GLL+ +H+GLV+EG F+
Sbjct: 384 VAYTAMILGCGMNGKAIDAIKLFDEMVDAQICPNLIMFTGLLTTYNHSGLVEEGYHCFTT 443
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390
M+K + + ++HYG MVDL GRA L A+ELI++MP +P + GALL AC +H + +
Sbjct: 444 MKK-YNLVPLVDHYGIMVDLFGRAGWLQEALELIKSMPMQPHAGVWGALLFACRLHNNAD 502
Query: 391 IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
+G+ +A + + G + N+Y S + ++ R R + + K
Sbjct: 503 LGE-IAAQHFFELEPDTTGYCSLPCNIYVSGERLDDVRRLRKIRKEKTFSK 552
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 246/465 (52%), Gaps = 19/465 (4%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E G D+++FP +LKA ++ G +H +K+GF Y T LL MY S +
Sbjct: 86 ENGYSPDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMK 145
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-----LKDVTSFNIMISGY 117
KVF+ +P +++AW ++ + + Q A+K+ M ++T N +I
Sbjct: 146 SGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXC- 204
Query: 118 ARIGKIHSARYI-----------FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
AR + +++ F +++ +++ Y G + A ++F KM
Sbjct: 205 ARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQ 264
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
+N+++WN+M+ Y + + + E +DLF +M + PD T SVLS CA+L +L G +
Sbjct: 265 RNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTV 324
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H Y G+ ++ TAL+DMYAK G + + ++F Q +DV W +MI GLA+HG G
Sbjct: 325 HAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDG 384
Query: 287 YAALKLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
AL + M+ DS + D IT+IG+L ACSH GLV+E + F M + + + EHYG
Sbjct: 385 NEALGMFQTMHEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYSIVPGREHYG 444
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
CMVDLL R+ A L+E M +P SI GALL C IH++L + ++V + + +
Sbjct: 445 CMVDLLSRSGHFGEAERLMETMAIQPNISIXGALLYGCQIHENLXVANQVKERLTELESC 504
Query: 406 LSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
S G ++ +N+YA G+WE+ N R +M I K G S +E+
Sbjct: 505 QS-GAHVLLSNIYAKAGRWEDVNGTRKVMKHKRITKIIGHSSVEM 548
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 15/272 (5%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
I++A VF ++ + WNSM+ F + +M +LI+ D +F ++
Sbjct: 43 INNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKA 102
Query: 117 YARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
I + I + D + L+ Y + +M+ ++F + + NV+ W
Sbjct: 103 CCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAW 162
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++ GY+ + E + +F +M V+P+ +T+ + L CA +TG +H +
Sbjct: 163 TCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRK 222
Query: 233 NGL-------ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
G SN TA+++MYAKCGS + + ++F K +++ WN+MI +
Sbjct: 223 AGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYER 282
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
AL L +M S + D TF+ +LS C+H
Sbjct: 283 HKEALDLFFDMWTSGIYPDKATFLSVLSVCAH 314
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%)
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G++ A +F+++ +V WN+M+ G++ + + L+ ++ PD+ T VL
Sbjct: 41 GDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVL 100
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
AC + + G IH +G ++ + T L+ MY C ++ L+VF + +V
Sbjct: 101 KACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVV 160
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
W +I G + Y ALK+ +M+ V+ ++IT + L C+ +
Sbjct: 161 AWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARS 207
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/466 (33%), Positives = 247/466 (53%), Gaps = 17/466 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D+++FP +LK I+ G +H + +KTGF VY + LL MY S
Sbjct: 96 MQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGD 155
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA-- 118
++ KVFE +P+ +++AW S++ F + Q A++L M + V I ++
Sbjct: 156 LNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAA 215
Query: 119 --RIGKIHSARYIFDKV-----PAKDVVSWNSLILA------YTNAGEMEKAGEMFKKML 165
R IH+ + + D++ D S ++ILA Y G++ A +F KM
Sbjct: 216 AARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMP 275
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+N++ WN+M++ Y + E + LF +M+ P+ T SV+SAC ++G TG
Sbjct: 276 QRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRS 335
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+H A TAL+DMYAK G + +L++F K + KDV W MI GLA+ G
Sbjct: 336 LHARALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGK 395
Query: 286 GYAALKLLGEMNDSC-VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
G AL + M + V D IT+I +L ACSH GLV+EG + F+ M + +G+ +EHY
Sbjct: 396 GKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHY 455
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
GCM+DLL RA A EL+ MP +P +IL ++L+ C ++ ++ + +RV + N
Sbjct: 456 GCMIDLLSRAGHSKEAEELLMKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELEN 515
Query: 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
S G ++ +N++A W+E R+M+ I KT G+S +E+
Sbjct: 516 S-SSGVYVLLSNIHAKACNWQEMKLARDMLKHKNIGKTLGNSFVEI 560
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 145/287 (50%), Gaps = 19/287 (6%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
I+ A VF+++ ++ + WNSM+ + + G A+ + + M K D +F ++
Sbjct: 55 IEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKV 114
Query: 117 YARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ I + + + +++ DV + + L+ Y + G++ ++F+ + NV+ W
Sbjct: 115 CSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAW 174
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ G++ + E + LF +M+ V+P+ +T+T+ L+A A + TG +H
Sbjct: 175 TSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQ 234
Query: 233 NGLASNPHAT---------TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
G +P T TA++DMYAKCG + + +F K +++ WN+MI + +
Sbjct: 235 LGF--DPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQY 292
Query: 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
G G AL+L +M + + TF+ ++SAC+H G G L +R
Sbjct: 293 GRGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRSLHAR 339
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 2/173 (1%)
Query: 136 KDVVSWNSLI--LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFD 193
K+++ + LI A + G++E A +F ++ + V WN+M+ GY + +++
Sbjct: 35 KNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYE 94
Query: 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253
EM+ PD+ T VL C+ + L G +H G + + ++ L++MY CG
Sbjct: 95 EMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCG 154
Query: 254 SIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
+ L+VF +V W ++I G + AL+L +M + V+ ++I
Sbjct: 155 DLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEI 207
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 251/463 (54%), Gaps = 11/463 (2%)
Query: 12 SFPLLLKAAGILSSSCI-GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
+FP +K+A L G LH +++K + +V T+LL +Y + DA K F++
Sbjct: 76 TFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFDE 135
Query: 71 MPEK-DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT--SFNIM--ISGYARIGKIHS 125
M + ++W +++ A+ G+ A+ + V SF + ++ AR+ + +
Sbjct: 136 MRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVT 195
Query: 126 ARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
++ A +V + + Y GEM+KA +F KM K+V+ W MV GY
Sbjct: 196 GEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYAS 255
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ E ++LF M+ ++PD TV LSAC LG+L+ G R+ + + NP
Sbjct: 256 NGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVL 315
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
TALIDMYAKCGS ++ VF K + +D+ WNAMILGL + G+ A L+G+M S +
Sbjct: 316 GTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGM 375
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
+D TFIGLL +C+H GLV++G F M + + + ++EHYG MVDLL RA LL A
Sbjct: 376 TLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAH 435
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
+LI+ MP E + GALL C IH++ ++ + V K + + S G ++ +N+Y++
Sbjct: 436 QLIQDMPMEANAVVWGALLGGCKIHRNADLAEHVLKQLIQLEPWNS-GNYVVLSNIYSNS 494
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+WE+A + R M G+ K SS +E++G H+F G H
Sbjct: 495 GRWEDAAKLRLEMKAKGVEKVPASSWVELDGKVHEFHVGDKSH 537
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 133/290 (45%), Gaps = 12/290 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV D+++ +L A ++ G + K G G+V+V TA + +Y +D A
Sbjct: 172 GVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKA 231
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARI 120
VF+KM KD++AW +M+ +AS G A++L M ++ D + +S R+
Sbjct: 232 RGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRL 291
Query: 121 GKIHSARYI-----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
G + R + +D+V V+ +LI Y G +A +F+KM +++I WN M
Sbjct: 292 GALDLGRRVVGMLQWDEVLGNPVLG-TALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAM 350
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-NG 234
+ G + L +MK + + T +L +C + G ++ G R T
Sbjct: 351 ILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYH 410
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNAMILGLALH 283
+ ++D+ ++ G ++++ ++ ++ + W A++ G +H
Sbjct: 411 IRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIH 460
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 111/260 (42%), Gaps = 17/260 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D Y+ L A L + +G + G G+ + TAL+ MY
Sbjct: 269 MQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGS 328
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
+A+ VF+KM +DII WN+M+ G A L+ M +T +F ++
Sbjct: 329 TGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCS 388
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
G + R F + + + ++ + AG +++A ++ + M ++ N +
Sbjct: 389 CTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAV 448
Query: 171 TWNTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
W ++ G + + L V+ +++ N +Y+ ++++ S N G E A++
Sbjct: 449 VWGALLGGCKIHRNADLAEHVLKQLIQLEPWN-SGNYVVLSNIYS---NSGRWEDAAKLR 504
Query: 228 VYATDNGLASNPHATTALID 247
+ G+ P ++ +D
Sbjct: 505 LEMKAKGVEKVPASSWVELD 524
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 168/497 (33%), Positives = 250/497 (50%), Gaps = 47/497 (9%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCG--HVYVQTALLKMYGSLRCIDDAFKVFEK 70
+ LL++ SS IG LH I TG G ++ ALL+ Y S C A KVF++
Sbjct: 16 YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75
Query: 71 MPE--KDIIAWNSMLDAFASCGQMDHA------MKLIDLMP--------------LKDVT 108
+P KD + W +++ F D A M+ + P L DV
Sbjct: 76 IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135
Query: 109 -------------------SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
+ N ++ YA+ G + AR +F ++ + VVSW ++
Sbjct: 136 VGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVI 195
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG-NVKPDYLTVT 208
+ + +F +M +N + W M+ GYL S L E L EM ++ +Y+T+
Sbjct: 196 RSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLC 255
Query: 209 SVLSACANLGSLETGARIHVYATDNGLAS-NPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
S+L+AC+ G L G +H YA N TA++DMYAKCG I + + F K
Sbjct: 256 SILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQ 315
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
++V WNAM+ GLA+HG G AAL + +M K DD+TF +LSACSH+GLV +GC
Sbjct: 316 RNVVSWNAMLSGLAMHGLGRAALDIFPQMFKE-AKPDDVTFTSVLSACSHSGLVDQGCFY 374
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F +E +G+T K+EHY CMVDLLGRA L+ A L+ MP P E +LG+LL +C IH
Sbjct: 375 FGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHG 434
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
L++G+ + + + ++ +++ +N+YA G+ AN R ++ GI K G S
Sbjct: 435 KLQLGEHLLQELVQLDPQNTEYHILL-SNMYALAGKQNRANSLRQVLKKRGIKKVPGMSS 493
Query: 448 IEVNGSYHKFLAGGIGH 464
I V G H+F AG H
Sbjct: 494 IHVGGQVHQFSAGDKSH 510
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 43/300 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D + L L +G HG +K G G A++ MY
Sbjct: 109 MRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGL 168
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ +A +VF +M + +++W +LD + + + D MP ++ ++ IMI+GY
Sbjct: 169 MGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDS 228
Query: 121 GKIHSA-----RYIFDKVPAKDVVSWNSLILA---------------------------- 147
G + IFD + V+ S++ A
Sbjct: 229 GLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIM 288
Query: 148 --------YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
Y G + A + FKKM +NV++WN M++G L +D+F +M
Sbjct: 289 VGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQM-FKE 347
Query: 200 VKPDYLTVTSVLSACANLGSLETGA-RIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
KPD +T TSVLSAC++ G ++ G + G+ ++D+ + G +E++
Sbjct: 348 AKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEA 407
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 245/457 (53%), Gaps = 40/457 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G+ + + P +LKA G LS G +H +K F Y+ +AL+ MY
Sbjct: 895 MQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMY----- 949
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ CG ++ A ++ D + KD+ N M+SGYA+
Sbjct: 950 --------------------------SKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQH 983
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK----NVITW 172
G +H A + K+ +VVSWN+LI ++ G+ E+F+ M +V++W
Sbjct: 984 GFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSW 1043
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++++G++++ E D F EM P +T++S+L AC N+ +L G IH YA
Sbjct: 1044 TSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMV 1103
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G+ + + +AL+DMYAKCG I ++ +FY ++ WN++I G A HGY A++L
Sbjct: 1104 IGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIEL 1163
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M +S K D +TF +L+ACSHAG+V+ G LF +M++ + + +LEHY CMVDLLG
Sbjct: 1164 FNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLG 1223
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L A +LI+AMP EP + + GALL AC H ++E+ + A+ + + S G +
Sbjct: 1224 RAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHL-FELEPESPGSSL 1282
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+ +NLYA G+W A + + MM K G S IE
Sbjct: 1283 LLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 252/472 (53%), Gaps = 14/472 (2%)
Query: 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD 63
+G ++Y++ +L G +S+ G LH +K + V ALL +Y +++
Sbjct: 208 MGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEE 267
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYAR 119
A VFE + +++II+W + ++ F G A+K +M + +F+I+++
Sbjct: 268 AEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGC 327
Query: 120 IGKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKM-LVKNVITWNT 174
+ R +V K + S ++I Y+ GEM++A + FK+M + ++WN
Sbjct: 328 VKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNA 387
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ GY+ ++ + ++ F M +V + T +++ AC++ SL T +IH +
Sbjct: 388 LIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSN 447
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
+ SN H ++LI+ Y +CGS+E +++VF + DV WN++I + +G + A+ LL
Sbjct: 448 VESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLR 507
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+M + K TF+ +LSACSH+GLVQEG E F M +D+ + + H CMVD+LGRA
Sbjct: 508 KMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRA 567
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGEL-M 412
L+ A++ I+ + +PT SI LL+AC + +L++ + VA K++ + N D + +
Sbjct: 568 GQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPN---DATVYV 624
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA G+W +A R +M I K G S IEVN +KF + H
Sbjct: 625 TLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAH 676
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 139/303 (45%), Gaps = 10/303 (3%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ YT G++ A ++F K+ N+ W + R Y E + F EM+ ++P+
Sbjct: 844 LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 903
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ S+L AC +L TG +H N S+ + +ALI MY+KCG +E++ VF
Sbjct: 904 QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 963
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
KD+ NAM+ G A HG+ + AL L+ +M + VK + +++ L++ S G
Sbjct: 964 WIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSM 1023
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALL 380
E+F M + GV + + ++ + + + M F P+ + +LL
Sbjct: 1024 VSEVFRLMTAN-GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLL 1082
Query: 381 SACVIHQDLEIGDRV---AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
AC +L G + A ++ + + L+ ++YA CG EA MM +
Sbjct: 1083 PACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALV---DMYAKCGYISEAKILFYMMPER 1139
Query: 438 GIV 440
V
Sbjct: 1140 NTV 1142
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 157/346 (45%), Gaps = 10/346 (2%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
+G H +K G +V T+L+ MY +D A +V++KM D N ++ A+A
Sbjct: 131 LGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYA 190
Query: 88 SCGQMDHA----MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW-- 141
G A M++ ++ + +++ M++ I I + + V +S
Sbjct: 191 RNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETA 250
Query: 142 --NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
N+L+ Y+ G ME+A +F+ + +N+I+W + G+ + + + + F M+
Sbjct: 251 VGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESG 310
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
++P+ T + VL++C + G H G+AS TA+IDMY+ G ++++
Sbjct: 311 IEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAE 370
Query: 260 EVFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+ F + + WNA+I G L+ A++ M V ++ T+ + ACS
Sbjct: 371 KQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSF 430
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+ ++ SR+ K V L +++ + L+ A+++
Sbjct: 431 PSLATTVQIHSRLIKS-NVESNLHVASSLIEAYTQCGSLENAVQVF 475
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 152/319 (47%), Gaps = 20/319 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+E G+ + ++F ++L + G + G M H Q IK G V+V TA++ MY L
Sbjct: 306 MRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGE 365
Query: 61 IDDAFKVFEKMPE-KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-----TSFNIM- 113
+D+A K F++M ++WN+++ + +++ AM+ M +DV T NI
Sbjct: 366 MDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFK 425
Query: 114 ----ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
A +IHS R I V + V+ +SLI AYT G +E A ++F ++ +V
Sbjct: 426 ACSSFPSLATTVQIHS-RLIKSNVESNLHVA-SSLIEAYTQCGSLENAVQVFTQISDADV 483
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHV 228
++WN+++ Y ++ + + L +M KP T +VLSAC++ G ++ G
Sbjct: 484 VSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKS 543
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFC-WNAMILGLA----LH 283
D + + ++D+ + G +E +L+ K +K W ++ L
Sbjct: 544 MVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQ 603
Query: 284 GYGYAALKLLG-EMNDSCV 301
Y A K+L E ND+ V
Sbjct: 604 MAEYVAEKILDLEPNDATV 622
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%)
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P V S LS C G +E G R H + GL S+ T+LIDMYAKCG ++ ++ V
Sbjct: 111 PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRV 170
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
+ K D N +I A +G+ A ++ ++ + + + T+ +L+ C +
Sbjct: 171 YDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAI 230
Query: 322 QEGCELFSRMEK 333
QEG +L + + K
Sbjct: 231 QEGKQLHAHVVK 242
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%)
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+L G +H + GLA + L+ Y +CG + + ++F K ++ W +
Sbjct: 818 ALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTG 877
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
A G+ AL EM ++ + +L AC H
Sbjct: 878 ACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGH 916
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/463 (35%), Positives = 249/463 (53%), Gaps = 33/463 (7%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD----------AFKVFEKMP-EKDIIAWN 80
LH +K+G H T LL + C D A +VF+++P D++ +N
Sbjct: 50 LHAAAVKSGLQAHPAFVTRLLTL-----CTDQGAAKPAQLSYARQVFDRIPGPGDVVWYN 104
Query: 81 SMLDAFASCGQMDHA-----------MKLIDLMPLKDVTSFNIMISG--YARIGKI-HSA 126
++L +A C A +++++ D +F ++ AR G+ A
Sbjct: 105 TLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQA 164
Query: 127 RYIFDKV-PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
+ KV A+ +LI Y G+ A MF ++ + V+++N M+T +RS
Sbjct: 165 HGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRP 224
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
E + LF EM+A +K +T+ SVLSACA LG+LE G IH Y L S TAL
Sbjct: 225 GEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTAL 284
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305
IDMY KCGS+E ++ VF + +D W+ MI+ A H YG A+ L EM +K DD
Sbjct: 285 IDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDD 344
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+TF+G+L ACSH+GLV EG + F M ++FG+ ++HYGC+ DLL R+ LDRA E I+
Sbjct: 345 VTFLGVLYACSHSGLVSEGLQYFDSM-REFGLVPGIKHYGCVADLLARSGQLDRAYEFID 403
Query: 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425
+P +PT + LLSAC D ++G +V + + + G+ ++F+NL A+ G+WE
Sbjct: 404 ELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDS-HGGDYVIFSNLCANTGRWE 462
Query: 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSNL 468
E NR R +MN+ G+VK G S IEV+ H+F AG H +L
Sbjct: 463 EMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSL 505
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 149/335 (44%), Gaps = 16/335 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D Y+F LLKA + G HG +K G H YV L+ MY
Sbjct: 133 MLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGD 192
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNIM--ISG 116
A +F ++ + ++++N+M+ A + A+ L M K +TS ++ +S
Sbjct: 193 ARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSA 252
Query: 117 YARIGKIHSARYIFD---KVPAKDVVSWNS-LILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A +G + R+I + KV +V N+ LI Y G +E A +F+ M ++ W
Sbjct: 253 CALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAW 312
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+ M+ Y E + LF+EMK +KPD +T VL AC++ G + G + +
Sbjct: 313 SVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMRE 372
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV-FCWNAMILGLALHG---YGYA 288
GL + D+ A+ G ++++ E + +K W ++ G G
Sbjct: 373 FGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQ 432
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ + E++DS D + F L C++ G +E
Sbjct: 433 VFERILELDDSH-GGDYVIFSNL---CANTGRWEE 463
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 24/263 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + + +L A +L + +G +H K V V TAL+ MYG
Sbjct: 234 MQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGS 293
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG--YA 118
++DA VF+ M +D AW+ M+ A+A+ A+ L + M + + ++ G YA
Sbjct: 294 LEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYA 353
Query: 119 --RIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVIT 171
G + FD + +V + + +G++++A E ++ +K I
Sbjct: 354 CSHSGLVSEGLQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAIL 413
Query: 172 WNTMVTGY-------LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
W T+++ L Q++ +++L D+ G DY+ +++ CAN G E
Sbjct: 414 WRTLLSACGSRGDADLGKQVFERILEL-DDSHGG----DYVIFSNL---CANTGRWEEMN 465
Query: 225 RIHVYATDNGLASNPHATTALID 247
R+ + G+ P ++ +D
Sbjct: 466 RVRKLMNEKGVVKVPGCSSIEVD 488
>gi|449446907|ref|XP_004141212.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 456
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 150/449 (33%), Positives = 253/449 (56%), Gaps = 4/449 (0%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G+ ++F +L A+ + + +G +H + I+ GF + V T+L+ MY
Sbjct: 7 MQKAGILESEFTFSSVLSASARMPALYLGRQVHARVIQLGFLSNKIVLTSLMDMYAKCGF 66
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I DA +F + +KDI+AW SM+ ++ G MD A L D M ++ S+ M++GYA
Sbjct: 67 ILDAESLFFAIDDKDIVAWTSMIRGYSKLGMMDDAQDLFDKMGQRNSFSWTTMVAGYANW 126
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G + +A+ ++D +P K+ VS ++I Y G++ +A +F ++LV + MV Y
Sbjct: 127 GNMKAAKQLYDAMPEKNPVSQLAMIAGYGRCGDVAEAERIFGEILVPDSSCCAAMVACYS 186
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP- 239
++ E ++++ +MK N+ + + + LSAC LG +E +++ + D G
Sbjct: 187 QNGYGKEAIEMYKQMKEKNLGTNEVALVGALSACVQLGDVEMASKL-IDQVDEGCCDRTL 245
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ ALI ++K G+IE++ E F + + +DV ++ +I+ LA HG AL L +M +
Sbjct: 246 FVSNALIHKHSKFGNIERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEALDLFSKMEEE 305
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+K + I FIG+L+AC+HAGL+++GC+ F M K FG+ + HY CMVDLLGRA ++
Sbjct: 306 GIKPNQICFIGVLNACAHAGLIEQGCKYFELMRKGFGIEPQKGHYACMVDLLGRAGEVEM 365
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A +I+ E G+LL AC IH +LE+G+ AK + + + G ++ AN YA
Sbjct: 366 AYNVIKGAR-EIDAKTWGSLLGACKIHGNLEVGEIAAKHLF-EMEPENTGNYVLLANTYA 423
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+W EA + RN+M + GI K G S +
Sbjct: 424 QMKEWNEAEKVRNVMVERGIKKFPGYSWV 452
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 121/285 (42%), Gaps = 41/285 (14%)
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
+ L+ M+ + T +SVLSA A + +L G ++H G SN T+L+DM
Sbjct: 1 MSLYARMQKAGILESEFTFSSVLSASARMPALYLGRQVHARVIQLGFLSNKIVLTSLMDM 60
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YAKCG I + +F+ KD+ W +MI G + G A L +M + + ++
Sbjct: 61 YAKCGFILDAESLFFAIDDKDIVAWTSMIRGYSKLGMMDDAQDLFDKMG----QRNSFSW 116
Query: 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTR--KLEHYGCMVDLLGRARLL--------- 357
+++ ++ G ++ +L+ M + V++ + YG D+ R+
Sbjct: 117 TTMVAGYANWGNMKAAKQLYDAMPEKNPVSQLAMIAGYGRCGDVAEAERIFGEILVPDSS 176
Query: 358 ---------------DRAIELIEAMPFE---PTESILGALLSACVIHQDLEIG----DRV 395
AIE+ + M + E L LSACV D+E+ D+V
Sbjct: 177 CCAAMVACYSQNGYGKEAIEMYKQMKEKNLGTNEVALVGALSACVQLGDVEMASKLIDQV 236
Query: 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+ C ++ ++S+ + ++ G E A N M D +V
Sbjct: 237 DEGCCDRTLFVSNA----LIHKHSKFGNIERAQEEFNRMKDRDVV 277
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 254/468 (54%), Gaps = 14/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV D+ ++ ++LKA G Q + G+ V+V A+L +Y
Sbjct: 96 MASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGK 155
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG---- 116
+D+A +VF+KM +D++ W +M+ A GQ A+ + M K V +++ G
Sbjct: 156 MDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQA 215
Query: 117 -----YARIG-KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
++++G IH Y+ K DV+ SL+ Y G +E A +F++ML KNVI
Sbjct: 216 CTTLGHSKMGLSIHG--YMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVI 273
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W+ +++G+ ++ + L +M++ KPD +++ SVL AC+ +G L+ G +H Y
Sbjct: 274 SWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYI 333
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
L + ++TA+IDMY+KCGS+ + VF + +D WNA+I +HG G AL
Sbjct: 334 VRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEAL 392
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M ++ VK D TF LLSA SH+GLV++G FS M ++ + +HY CMVDL
Sbjct: 393 SLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDL 452
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
L RA ++ A ELIE+M EP +I ALLS C+ H IG+ AK V + N G
Sbjct: 453 LSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVL-ELNPDDPGI 511
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ +N +A+ +W+E R +M TG+ K G SV+EVNG H FL
Sbjct: 512 YSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFL 559
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 183/368 (49%), Gaps = 21/368 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H I TG GH L++ Y L I+ A +VF+K P+ + AWN+M+ A++ G
Sbjct: 26 IHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGA 85
Query: 92 MDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSA----RYIFDKVPAKDVVSWNS 143
M A+ L M + D +++ +++ R + S R D+ DV +
Sbjct: 86 MFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAA 145
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
++ Y G+M++A +F KM ++++ W TM+TG ++ E VD++ +M V+ D
Sbjct: 146 VLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGD 205
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ + ++ AC LG + G IH Y + + T+L+DMYAK G +E + VF
Sbjct: 206 GVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFR 265
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ K+V W+A+I G A +G+ AL+L+ +M K D ++ + +L ACS G ++
Sbjct: 266 RMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKL 325
Query: 324 GCELFSRMEKDFGVTRKLEHYGC-----MVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
G + + R+L H+ C ++D+ + L A + + + F + S A
Sbjct: 326 GKSVHGY------IVRRL-HFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSIS-WNA 377
Query: 379 LLSACVIH 386
++++ IH
Sbjct: 378 IIASYGIH 385
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
T A+IH G+ + ++ LI YA+ G IE + +VF KS V WNAMI+ +
Sbjct: 22 TIAKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYS 81
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
G + AL L M V+ D T+ +L AC+ + ++ G E + R D G +
Sbjct: 82 RRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETW-RQAVDQGYGDDV 140
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAM 367
+++L + +D A+ + + M
Sbjct: 141 FVGAAVLNLYAKCGKMDEAMRVFDKM 166
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 216/358 (60%), Gaps = 13/358 (3%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++ YA+ G + +R FD++ K+ SWN++I + G++ +A E+F +M + VI+W
Sbjct: 54 LVDMYAKCGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISW 113
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++ G+++ L+ E ++ F +M+ V+PD +T+ +VLSACANLG+L G +H YA
Sbjct: 114 TVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALK 173
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
GL N +LID+Y++CG+IE + +VF K + + WN++I GLA +G+ AL+
Sbjct: 174 KGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEH 233
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M K +D++F G L+ACSH GLV EG + F ME+ ++ ++EHYGC+VDL
Sbjct: 234 FDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYS 293
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL------ 406
RA L+ A+ +++ MP +P E ++G+LL+AC D+E+ +R+ NYL
Sbjct: 294 RAGRLEDAMSVVQNMPMKPNEVVVGSLLAACRTRGDVELAERLM-------NYLVHLDPG 346
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+D ++ +N+YA+ G+W+ A + R M GI K G S IE+ H+F+AG H
Sbjct: 347 ADSNYVLLSNIYAAVGRWDGACKQRMTMKALGIQKKPGFSSIEIGCDIHEFVAGDKSH 404
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 146/311 (46%), Gaps = 43/311 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSS--SCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGS 57
M+ L + ++ +F LL L S + +G +LH T K G ++ V TAL+ MY
Sbjct: 1 MRLLEIDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAK 60
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
++ + F+++ K+ +WN+M+D F G++ A+++ D MP + V S+ ++I+G+
Sbjct: 61 CGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGF 120
Query: 118 ARIGKIHSA---------------------------------------RYIFDKVPAKDV 138
++G A RY K +V
Sbjct: 121 VKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNV 180
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y+ G +E A ++F+KM + +++WN+++ G + E ++ FD M+
Sbjct: 181 KICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQ 240
Query: 199 NVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KP+ ++ T L+AC++ G ++ G + + + ++ ++D+Y++ G +E
Sbjct: 241 GFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLED 300
Query: 258 SLEVFYKSQVK 268
++ V +K
Sbjct: 301 AMSVVQNMPMK 311
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 7/141 (4%)
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSL--ETGARIHVYATDNGLAS-NPHATTALIDMYAK 251
M+ + P+++T ++LS CA+L S G +H Y GL + N TAL+DMYAK
Sbjct: 1 MRLLEIDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAK 60
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
CG +E S F + +VK+ F WN MI G +G A+++ EM + V I++ L
Sbjct: 61 CGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGV----ISWTVL 116
Query: 312 LSACSHAGLVQEGCELFSRME 332
++ GL +E E F +M+
Sbjct: 117 INGFVKMGLFEEALEWFRKMQ 137
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 48/264 (18%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D + +L A L + +GL +H +K G +V + +L+ +Y
Sbjct: 136 MQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGA 195
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
I+ A +VFEKM E+ +++WNS++ A+ G + A++ DLM + + SF ++
Sbjct: 196 IELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTGALTA 255
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ G + FD + +S + ++ Y+ AG +E A + + M
Sbjct: 256 CSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNM------- 308
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
+KP+ + V S+L+AC G +E R+ Y
Sbjct: 309 ---------------------------PMKPNEVVVGSLLAACRTRGDVELAERLMNYLV 341
Query: 232 --DNGLASNPHATTALIDMYAKCG 253
D G SN L ++YA G
Sbjct: 342 HLDPGADSN---YVLLSNIYAAVG 362
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 226/389 (58%), Gaps = 2/389 (0%)
Query: 78 AWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKD 137
W +L + G + H + V ++ Y++ G+ AR +FD + K+
Sbjct: 23 GWGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRFRKARLVFDYMEEKN 82
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V+WN++I Y G+++ A ++F +M +++I+W M+ G+++ + E + F EM+
Sbjct: 83 SVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQI 142
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
VKPDY+ + + L+AC NLG+L G IH Y +N + +LID+Y +CG +E
Sbjct: 143 SGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEF 202
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +VF K + + V WN++I+G A +G+ + +L +M + K + +TF G L+AC+H
Sbjct: 203 ARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACNH 262
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
GLV+EG F M++D+ ++ ++EHYGC+VDL RA L+ A++++++MP +P E ++G
Sbjct: 263 VGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIG 322
Query: 378 ALLSACVIH-QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
+LL+AC + + +RV K + + N S ++ +N+YA+ G+WE A++ R M
Sbjct: 323 SLLAACRTQGNNTVLAERVMKHL-SDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKG 381
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
G+ K G S IE++ H F+AG H+
Sbjct: 382 LGLKKEPGFSSIEIDDCTHVFMAGDNTHV 410
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 149/322 (46%), Gaps = 47/322 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGIL--SSSCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGS 57
M+ GV ++ +F LL G L S +G +LHG K G HV V TA+L MY
Sbjct: 5 MRLAGVEPNHITFIALLSGWGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILGMYSK 64
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
A VF+ M EK+ + WN+M+D + GQ+D A+KL D MP +D+ S+ MI+G+
Sbjct: 65 RGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGF 124
Query: 118 ARIGKIHSA---------------------------------------RYIFDKVPAKDV 138
+ G A RY+ + +V
Sbjct: 125 VKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNV 184
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y G +E A ++F KM + V++WN+++ G+ + E + F +M+
Sbjct: 185 RVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEE 244
Query: 199 NVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KP+ +T T L+AC ++G +E G R D ++ L+D+Y++ G +E
Sbjct: 245 GFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLED 304
Query: 258 SLEVFYKSQVKDVFCWNAMILG 279
+L+V +K N +++G
Sbjct: 305 ALKVVQSMPMKP----NEVVIG 322
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/457 (34%), Positives = 248/457 (54%), Gaps = 11/457 (2%)
Query: 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI 76
LKA + +G LH +K +V L+ MY + DA VF+ MP KD+
Sbjct: 296 LKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDV 355
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFN-IMISGYARIGKIHSARYIFDKVPA 135
I WNS++ +++CG AM L M K+ FN +S + A ++V
Sbjct: 356 IVWNSIISGYSNCGYDIEAMSLFTNM-YKEGLEFNQTTLSTILKSTAGSQANGFCEQVHT 414
Query: 136 KDVVSW--------NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+ S NSL+ +Y +E A ++F+ ++++ + +M+T Y + L E
Sbjct: 415 ISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEE 474
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
+ ++ M+ ++KPD +S+ +ACANL + E G +IHV+ GL S+ A +L++
Sbjct: 475 ALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVN 534
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MYAKCGSI+ + +F + + + W+AMI GLA HG+G AL+L +M + + + IT
Sbjct: 535 MYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHIT 594
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367
+ +LSAC+HAGLV E F MEK FG+T EHY CMVD+LGR LD A+ L++ M
Sbjct: 595 LVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEM 654
Query: 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
PF+ + ++ GALL A IH+++E+G A+M+ S G ++ AN+YAS G W+
Sbjct: 655 PFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKS-GTHILLANIYASTGMWDNV 713
Query: 428 NRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R M ++ + K G S IE+ + F+ G H
Sbjct: 714 AKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSH 750
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 162/339 (47%), Gaps = 16/339 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ + +S +L A L G+ +HG IK G+ + ALL MY C
Sbjct: 179 MISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGC 238
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS----- 115
+ A VF ++P+ DI++WN+++ + D A+KL+ M V +S
Sbjct: 239 PEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKA 298
Query: 116 ----GYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
G ++G+ +HSA D P D LI Y+ G ++ A +F M K+VI
Sbjct: 299 CAAIGLVKLGRQLHSALMKMDMEP--DSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVI 356
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG--ARIHV 228
WN++++GY IE + LF M ++ + T++++L + A GS G ++H
Sbjct: 357 VWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTA--GSQANGFCEQVHT 414
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ +G + + +L+D Y KC +E + +VF +D+ + +MI + +G G
Sbjct: 415 ISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEE 474
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
ALK+ M D +K D F L +AC++ ++G ++
Sbjct: 475 ALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQI 513
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 127/266 (47%), Gaps = 20/266 (7%)
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV----KNVITW 172
Y++ AR + D+VSW++LI Y G E+A + +M + N T+
Sbjct: 92 YSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTF 151
Query: 173 NTMVTG-----YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
++++ G L I V L EM + + P+ ++++VL+ACA L G ++H
Sbjct: 152 SSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVH 211
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
Y G S+P + AL+DMYAK G E ++ VFY+ D+ WNA+I G LH
Sbjct: 212 GYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKND 271
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR-----MEKDFGVTRKLE 342
ALKLLG+M V T L AC+ GLV+ G +L S ME D V L
Sbjct: 272 LALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGL- 330
Query: 343 HYGCMVDLLGRARLLDRAIELIEAMP 368
+D+ + LL A + + MP
Sbjct: 331 -----IDMYSKCGLLQDARMVFDLMP 351
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 128/288 (44%), Gaps = 7/288 (2%)
Query: 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
D S N+L+ Y +G E A +F ++ ++++WN ++ G + + + L +M
Sbjct: 222 DPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMG 281
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+ V P T++S L ACA +G ++ G ++H + + LIDMY+KCG ++
Sbjct: 282 SYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQ 341
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ VF KDV WN++I G + GY A+ L M ++ + T +L S
Sbjct: 342 DARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILK--S 399
Query: 317 HAGLVQEG-CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESI 375
AG G CE + G ++D G+ LL+ A ++ E P E
Sbjct: 400 TAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAED---- 455
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
L A S + +G+ KM + + +F++L+ +C
Sbjct: 456 LVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACAN 503
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ + D + F L A LS+ G +H +K G V+ +L+ MY
Sbjct: 482 MQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGS 541
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
IDDA +F ++ + I++W++M+ A G A++L M + +I ++S
Sbjct: 542 IDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSA 601
Query: 117 YARIGKIHSARYIF 130
G + AR F
Sbjct: 602 CNHAGLVTEARRFF 615
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 219/358 (61%), Gaps = 5/358 (1%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y SAR +FD++P K++V+WNS++ +Y +G++ A +F +M +++V+
Sbjct: 893 NTLIHMYGSFRDKASARKLFDEMPYKNLVTWNSILDSYAKSGDVVSARLVFDEMTMRDVV 952
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDE-MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
TW++M+ GY++S Y E +++FD+ M+ G+ K + +T+ SVL ACA+LG L G +H Y
Sbjct: 953 TWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELNRGKVVHRY 1012
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK--DVFCWNAMILGLALHGYGY 287
D L T+LIDMYAKCGSI + VF + VK D WNAMI GLA HG+
Sbjct: 1013 ILDVHLPLTVILQTSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIR 1072
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
+L L +M +S + D+ITF+ LL+ACSH GLV+E F+ + K+ G K EHY CM
Sbjct: 1073 ESLLLFHKMRESEIDPDEITFLCLLAACSHGGLVKEAWHFFTSL-KESGAEPKSEHYACM 1131
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
VD+L RA L+ A + I M +PT S+LGAL + C+ H +LE+ + V K + + +
Sbjct: 1132 VDVLSRAGLVKDAHDFISEMLIKPTGSVLGALFNGCINHGNLELAETVGKKLIELQPH-N 1190
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
DG + AN+YA Q+ A R M G+ K AG S+I++NG+ H+F+A H
Sbjct: 1191 DGRYVGLANVYAINKQFGAARSMREAMEKKGVKKIAGHSIIKLNGTSHRFIAHDQTHF 1248
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 42/296 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D+ ++P LLK++ LS+ IG LH +KTG +++ L+ MYGS R A
Sbjct: 849 GFSPDHMTYPFLLKSSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASA 908
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
K+F++MP K+++ WNS+LD++A G + A + D M ++DV +++ MI GY + G+ +
Sbjct: 909 RKLFDEMPYKNLVTWNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYN 968
Query: 125 SA----------------------------------------RYIFDKVPAKDVVSWNSL 144
A RYI D V+ SL
Sbjct: 969 EALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELNRGKVVHRYILDVHLPLTVILQTSL 1028
Query: 145 ILAYTNAGEMEKAGEMFKKMLVK--NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
I Y G + A +F VK + + WN M+ G E + LF +M+ + P
Sbjct: 1029 IDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIRESLLLFHKMRESEIDP 1088
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
D +T +L+AC++ G ++ ++G ++D+ ++ G ++ +
Sbjct: 1089 DEITFLCLLAACSHGGLVKEAWHFFTSLKESGAEPKSEHYACMVDVLSRAGLVKDA 1144
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+LA ++ A ++ K+ WN ++ G+ S+ + + ++ ++ PD+
Sbjct: 795 LLAVDATSDVNYAYKLLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDH 854
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLA-----SN--------------------- 238
+T +L + + L + E G +H GL SN
Sbjct: 855 MTYPFLLKSSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDE 914
Query: 239 -PHAT----TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
P+ +++D YAK G + + VF + ++DV W++MI G G AL++
Sbjct: 915 MPYKNLVTWNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIF 974
Query: 294 GE-MNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ M KA+++T + +L AC+H G + G
Sbjct: 975 DQMMRMGSSKANEVTMVSVLCACAHLGELNRG 1006
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKA---- 157
DV +++++I + + A +F+++ +K V ++NS+I + GE+++
Sbjct: 613 DVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGLSCI 672
Query: 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217
M++ +VIT+ +++ G S+ E + ++EMK + P+ +T +++ N
Sbjct: 673 VRMYEDEKNPDVITYTSLIHGLCASRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNC 732
Query: 218 G 218
G
Sbjct: 733 G 733
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 65/379 (17%), Positives = 157/379 (41%), Gaps = 57/379 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G H D ++ +L+ S L + + + G+ ++ T L+ +
Sbjct: 205 MRDCGFHFDKFTLTPVLQVYCNNGKSERALSVFNEILSRGWLDE-HISTILVVSFCKWGQ 263
Query: 61 IDDAFKVFEKMPEKDII----AWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNI 112
+D AF++ E + E+ I + ++ F ++D A +L + M D+ +++
Sbjct: 264 VDKAFELIEMLEERHIRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALYDV 323
Query: 113 MISGYARIGKIHSARYIFDKV------PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
+I G + + A ++ ++ P + ++ L+ +++ E+ + K+++
Sbjct: 324 LIGGLCKHKDLEMALSLYLEIKRSGIPPDRGILG--KLLCSFSEESELSR----ITKVII 377
Query: 167 KNVIT------WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220
++ T + +++ G++R+ L E + + GN + D ++ L
Sbjct: 378 GDIDTKSVMLLYKSLLEGFIRNDLVHEAYNFIQNL-MGNHESDGMSEIVKL--------- 427
Query: 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL----EVFYKSQVKDVFCWNAM 276
+ + + + + + +ID K + ++ ++ + + +N +
Sbjct: 428 -------LKDQNKAILPDSDSLSIVIDCLVKANKVNMAVTLLHDIVQNGLIPSLMMYNNI 480
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDIT----FIGLLSACSHAGLVQEGCELFSRME 332
I G+ G +LKLL EM D+ V+ T + L C AG + +L +M
Sbjct: 481 IEGMCKEGRSEESLKLLAEMKDAGVEPSQYTLNCIYGCLAERCDFAGAL----DLLKKM- 535
Query: 333 KDFGVTRKLEHYGCMVDLL 351
+ +G ++H C+V L
Sbjct: 536 RFYGFEPWIKHTTCLVKKL 554
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 22/220 (10%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK----NVITWNTMVTGYLRSQLYIEVVDL 191
+ +VS+ + I +++ E+F+ +VI ++ ++ ++ E +L
Sbjct: 577 RHMVSYTAAIEGLIRNEGVDRGLELFRDTCANGHCPDVIAYHVLIKALCKACRTTEADNL 636
Query: 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
F+EM + +KP T S++ G ++ G V ++ NP T ++
Sbjct: 637 FNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGLSCIVRMYED--EKNPDVITYTSLIHGL 694
Query: 252 CGSIEQSLEVFYKSQVKDVFCWN------AMILGLALHGYGYAALKLLGEMNDSCVKADD 305
C S S + +++K C+ A+I GL G+ AL EM + ++ D
Sbjct: 695 CASRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEALVYFREMEEKEMEPDS 754
Query: 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
++ L+S+ + + G FG+ R++ H G
Sbjct: 755 AVYLSLVSSFLSSENISAG----------FGIFREMVHKG 784
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 70/350 (20%), Positives = 129/350 (36%), Gaps = 37/350 (10%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK----DIIAWNSMLD 84
GL L T G C V L+K +A +F +M K + +NSM+D
Sbjct: 598 GLELFRDTCANGHCPDVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVATYNSMID 657
Query: 85 AFASCGQMDHAMKLIDLM----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
+ G++D + I M DV ++ +I G + P++ +
Sbjct: 658 GWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCA-----------SRRPSEAISR 706
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
WN EM K N IT+ ++ G E + F EM+ +
Sbjct: 707 WN----------------EMKGKDCYPNRITFMALIQGLCNCGWSSEALVYFREMEEKEM 750
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD S++S+ + ++ G I G L+ + A + + +
Sbjct: 751 EPDSAVYLSLVSSFLSSENISAGFGIFREMVHKGRFPVSVDRNYLLAVDAT-SDVNYAYK 809
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
+ K + WN +I G + ++++ ++ S D +T+ LL + S
Sbjct: 810 LLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLKSSSRLSN 869
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
+ G L + K G+ L ++ + G R A +L + MP++
Sbjct: 870 REIGGSLHCSVVKT-GLEWDLFISNTLIHMYGSFRDKASARKLFDEMPYK 918
>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
Length = 695
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/429 (34%), Positives = 229/429 (53%), Gaps = 17/429 (3%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMP--------------EKDIIAWNSMLDAFASCGQMDHAM 96
L+ YG DA ++F+ +P E+++++WNSM+ + G + A
Sbjct: 200 LIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSAR 259
Query: 97 KLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
L + MP KD+ S+N MISGY + + + +F ++P D VSWN +I + GE E
Sbjct: 260 ALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEH 319
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A F +M + I+WNTM++GY ++ YI V LF +M PD T +SVL+ACA+
Sbjct: 320 ARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACAS 379
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNA 275
+ L GA+IH + + + ALI MY++CG++ + +F + KD+ WNA
Sbjct: 380 IPMLGLGAQIHQL-VEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNA 438
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
+I HG AL+L EM + V ITF+ LLSAC +AGLV EG +F M ++
Sbjct: 439 LIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEY 498
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395
G+ ++EHY +V+L+GR LD A+E+I +MP P S+ GA L AC ++ +
Sbjct: 499 GIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMA 558
Query: 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYH 455
AK + + N S ++ NL+A G+W A R M GI K G S I++ G H
Sbjct: 559 AKEL-STINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMH 617
Query: 456 KFLAGGIGH 464
F++G H
Sbjct: 618 VFISGDTWH 626
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/428 (22%), Positives = 186/428 (43%), Gaps = 66/428 (15%)
Query: 50 ALLK--MYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV 107
ALL+ YG+ R ++F+ +P + ++ WNS+L A A + D MP++D
Sbjct: 9 ALLRAGRYGAAR------RLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDA 62
Query: 108 TSFNIMISGYA---RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
S+N +++ Y+ + +AR +FD++P +DVV+WN+L+ AY G M++A +F +M
Sbjct: 63 VSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEM 122
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN----------------------VKP 202
+N +WNTMVTG+ + ++ +D+FD M A + +
Sbjct: 123 PQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLT 182
Query: 203 DYLTVT----------SVLSACANLGSLETGARI----------HVYATDNGLASNPHAT 242
L+VT +++ A G R+ H G N +
Sbjct: 183 KRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSW 242
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
+++ Y K G + + +F + KD+ WN MI G + KL EM D
Sbjct: 243 NSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDP--- 299
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK--LEHYGCMVDLLGRARLLDRA 360
D +++ ++ G + F RM + ++ + Y + + +L +
Sbjct: 300 -DTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKM 358
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYA 419
+E+ E P ++L+AC L +G ++ ++V + +++ D + +Y+
Sbjct: 359 LEVGEI----PDRHTFSSVLAACASIPMLGLGAQIHQLV--EKSFVPDTAISNALITMYS 412
Query: 420 SCGQWEEA 427
CG +A
Sbjct: 413 RCGALNDA 420
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 145/310 (46%), Gaps = 27/310 (8%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V LL Y +D+A ++F++MP+++ +WN+M+ F + GQ+ A+ + D MP
Sbjct: 96 VVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPA 155
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGE 159
KD S + M+SG+ + G +H A + K + K V ++N+LI+AY AG A
Sbjct: 156 KDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKR 215
Query: 160 MF--------------KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
+F +K +NV++WN+M+ Y+++ LF+EM D +
Sbjct: 216 LFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMP----DKDLV 271
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ +++S ++ ++ D S +I + + G E + F +
Sbjct: 272 SWNTMISGYTQASDMKESEKLFWEMPDPDTVS----WNLIIQGFMQKGEAEHARGFFDRM 327
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ WN MI G +G +++KL +M + D TF +L+AC+ ++ G
Sbjct: 328 PERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGA 387
Query: 326 ELFSRMEKDF 335
++ +EK F
Sbjct: 388 QIHQLVEKSF 397
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 57/317 (17%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N L A G+ A +L D +P + V ++N +++G AR +AR FD +P +D V
Sbjct: 4 NRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAV 63
Query: 140 SWNSLILAYT---NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
SWN+L+ AY+ + + A +F +M ++V+TWNT++ Y R L E LFDEM
Sbjct: 64 SWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMP 123
Query: 197 AGNVKPDYLTVTSVLSA-----------------CANLGSLETG---------------A 224
N VT +A A+L ++ +G
Sbjct: 124 QRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTK 183
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF--------------YKSQVKDV 270
R+ V D + A LI Y + G + +F K ++V
Sbjct: 184 RLSVTDMDKAV----DAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNV 239
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
WN+M++ G +A L EM D D +++ ++S + A ++E +LF
Sbjct: 240 VSWNSMMICYIKAGDVCSARALFNEMPDK----DLVSWNTMISGYTQASDMKESEKLFWE 295
Query: 331 MEKDFGVTRKLEHYGCM 347
M V+ L G M
Sbjct: 296 MPDPDTVSWNLIIQGFM 312
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 246/449 (54%), Gaps = 17/449 (3%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
FP L +A + G +HG + GF + V+T +L +Y +CI A +VF+
Sbjct: 212 FPALGRAGALRE----GKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDF 267
Query: 73 EKDIIAWNSMLDAFAS------CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
+K+ + W++M+ + G++ M + D + + + +++ G AR G +
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGG 327
Query: 127 R----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
R Y D+ N++I Y G + A F ++ +K+VI++N+++TG + +
Sbjct: 328 RCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVN 387
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E LF EM+ ++PD T+ VL+AC++L +L G+ H Y +G A N
Sbjct: 388 CRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSIC 447
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
AL+DMY KCG ++ + VF +D+ WN M+ G +HG G AL L M ++ V
Sbjct: 448 NALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVN 507
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGCMVDLLGRARLLDRAI 361
D++T + +LSACSH+GLV EG +LF+ M + DF V +++HY CM DLL RA LD A
Sbjct: 508 PDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAY 567
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
+ + MPFEP +LG LLSAC +++ E+G+ V+K + +S + L++ +N Y++
Sbjct: 568 DFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKM--QSLGETTESLVLLSNTYSAA 625
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
+WE+A R R + G++KT G S ++V
Sbjct: 626 ERWEDAARIRMIQKKRGLLKTPGYSWVDV 654
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 160/337 (47%), Gaps = 15/337 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV Y++P +LKA L + G ++H + F +YV TAL+ Y
Sbjct: 94 MLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGE 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFA-SCGQMDHAMKLIDLMPL----KDVTSFNIMIS 115
++ A KVF++MP++D++AWN+M+ F+ C D +D+ + ++++ M
Sbjct: 154 LEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFP 213
Query: 116 GYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
R G + + + + D+V ++ Y + + A +F KN +T
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVT 273
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGN----VKPDYLTVTSVLSACANLGSLETGARIH 227
W+ M+ GY+ +++ E ++F +M + V P + + +L CA G L G +H
Sbjct: 274 WSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTP--VAIGLILMGCARFGDLSGGRCVH 331
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
YA G + +I YAK GS+ + F + +KDV +N++I G ++
Sbjct: 332 CYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPE 391
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ +L EM S ++ D T +G+L+ACSH + G
Sbjct: 392 ESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHG 428
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
GQ+ H L + L T + YA ++ AR++FD++P +
Sbjct: 18 GQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRI----------- 66
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
N I W+ M+ Y + + +DL+ +M V+P T
Sbjct: 67 ------------------NPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPF 108
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
VL ACA L +++ G IH + + A++ + TAL+D YAKCG +E +++VF + +D
Sbjct: 109 VLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRD 168
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMND-SCVKADDITFIGLLSACSHAGLVQEG 324
+ WNAMI G +LH + L +M + + T +G+ A AG ++EG
Sbjct: 169 MVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG 224
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 145/318 (45%), Gaps = 30/318 (9%)
Query: 28 IGLMLHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI--IAWNSMLD 84
+G ++H +K V L ++Y S ++ A VF+++P I IAW+ M+
Sbjct: 17 LGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIR 76
Query: 85 AFASCGQMDHAMKLIDL---------MPLKDVTSFNIMISGYARIGKIHSARYIFDKVP- 134
A+AS D A K +DL P K ++ ++ A + I + I V
Sbjct: 77 AYAS---NDFAEKALDLYYKMLNSGVRPTK--YTYPFVLKACAGLRAIDDGKLIHSHVNC 131
Query: 135 ---AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
A D+ +L+ Y GE+E A ++F +M ++++ WN M++G+ +V+ L
Sbjct: 132 SDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGL 191
Query: 192 FDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
F +M+ + P+ T+ + A G+L G +H Y T G +++ T ++D+YA
Sbjct: 192 FLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYA 251
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
K I + VF K+ W+AMI G + +K GE+ + D++ +
Sbjct: 252 KSKCIIYARRVFDLDFKKNEVTWSAMIGGYVEN----EMIKEAGEVFFQMLVNDNVAMVT 307
Query: 311 LLSACSHAGLVQEGCELF 328
++ GL+ GC F
Sbjct: 308 PVA----IGLILMGCARF 321
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 36/232 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ D + +L A L++ G HG + G+ + + AL+ MY
Sbjct: 400 MRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGK 459
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A +VF+ M ++DI++WN+ML F G A+ L + M V
Sbjct: 460 LDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNP----------- 508
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM------LVKNVITWNT 174
D V+ +++ A +++G +++ ++F M ++ + +N
Sbjct: 509 ----------------DEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNC 552
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
M R+ E D ++M +PD + ++LSAC + E G +
Sbjct: 553 MTDLLARAGYLDEAYDFVNKMP---FEPDIRVLGTLLSACWTYKNAELGNEV 601
>gi|356576967|ref|XP_003556601.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Glycine max]
Length = 453
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 237/427 (55%), Gaps = 14/427 (3%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMP---------EKDIIAWNSMLDAFASCGQMDH 94
H +Q ++ + C+ K K+P +D+++W +M+ G+++
Sbjct: 5 HRVLQGSVARCTQHYCCVPSILKKIIKLPLFDFSLTDQVEDVVSWTTMVAGLLKNGRVED 64
Query: 95 AMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEM 154
A L D MP+++V S+N MI G+A+ ++H A +F +P +D+ SWN++I + G++
Sbjct: 65 ARALFDRMPVRNVVSWNAMIMGHAQNRRLHEALELFQGMPERDMHSWNTMITGFIQNGKL 124
Query: 155 EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSA 213
A ++F +M KN ITW M+ GY++ L E + +F++M A + +KP+ T +VL A
Sbjct: 125 NYAEKLFGEMREKNAITWTAMMMGYVQHGLSEEALKVFNKMLANDGLKPNTGTFVTVLRA 184
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVF 271
C++L L G +IH + + T LI+MY KCG + + +F + +D+
Sbjct: 185 CSDLAGLTEGQQIHQMISKTVFQDSXICGT-LINMYPKCGELHTAKXMFDDGLLSQRDLI 243
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
WN MI G A HGYG A+ L EM + V A+D+TF+GLL ACSH G+V+EG + F +
Sbjct: 244 SWNGMIAGYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLRACSHTGVVEEGLKYFDEI 303
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
K+ + + +HY C+VDL R L A +IE + E ++ G LL+ C +H +++I
Sbjct: 304 LKNRSIXLREDHYACLVDLCDRTGRLKEAFNIIEGLGKESPLTVWGVLLARCNVHGNVDI 363
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
G VAK + K + G + +N+YAS G+W+EA R MND G+ K G S IEV
Sbjct: 364 GKLVAKKIL-KIEPQNAGTHSLLSNMYASVGKWKEAANIRMKMNDKGLKKQPGYSWIEVG 422
Query: 452 GSYHKFL 458
+ F+
Sbjct: 423 NTVQVFV 429
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 245/476 (51%), Gaps = 18/476 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ G+ D+ ++ LL G + +H ++TG V +A + MY +RC
Sbjct: 515 MQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMY--IRC 572
Query: 61 --IDDAFKVFEKMPEKDIIAWNSMLDAFAS--CG--------QMDHAMKLIDLMPLKDVT 108
IDDA +F+K+ + + WN+M+ A CG QM + D ++
Sbjct: 573 GSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINIL 632
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S N+ + ++HS V D+ N+L+ Y+ G ++ A ++F M+ +N
Sbjct: 633 SANVDEEALEWVKEVHSHATDAGLV---DLRVGNALVHTYSKCGNVKYAKQVFDDMVERN 689
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW M+ G + + F +M + PD T S+LSACA+ G+LE +H
Sbjct: 690 VTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHN 749
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+A GL S+ AL+ MYAKCGSI+ + VF +DVF W MI GLA HG G
Sbjct: 750 HAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLE 809
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL +M K + +++ +L+ACSHAGLV EG F M +D+G+ +EHY CMV
Sbjct: 810 ALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMV 869
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DLLGRA LL+ A I MP EP ++ GALL ACV + +LE+ + AK K S
Sbjct: 870 DLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERL-KLKPKSA 928
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YA+ G+WE+ R+MM GI K G S IEV+ H F+ G H
Sbjct: 929 STYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSH 984
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 167/328 (50%), Gaps = 24/328 (7%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY---GSLR 59
+ G+ D++S+ +L+ + +H IK+G ++YV LL++Y G L+
Sbjct: 111 QQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQ 170
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMI 114
C A +VF+K+ +K+I W +M+ +A G + AM++ D M + ++T +I+
Sbjct: 171 C---ARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILK 227
Query: 115 SGYARIG-----KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ + KIH+ +I DV +L+ Y G +E A +F KM+ +NV
Sbjct: 228 ACCCPVNLKWGKKIHA--HIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNV 285
Query: 170 ITWNTMVTG---YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
I+W M+ G Y R Q E LF +M+ P+ T S+L+A A+ G+LE +
Sbjct: 286 ISWTVMIGGLAHYGRGQ---EAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEV 342
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H +A + GLA + AL+ MYAK GSI+ + VF +D+F W MI GLA HG G
Sbjct: 343 HSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRG 402
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSA 314
A L +M + + T++ +L+A
Sbjct: 403 QEAFSLFLQMQRNGCLPNLTTYLSILNA 430
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 150/324 (46%), Gaps = 10/324 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G ++Y++ +L A + +H + G + V AL+ MY
Sbjct: 311 MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGS 370
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMI-- 114
IDDA VF+ M E+DI +W M+ A G+ A L M L ++T++ ++
Sbjct: 371 IDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
S A + + + +S N+LI Y G ++ A +F M ++VI
Sbjct: 431 SAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVI 490
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN M+ G ++ E +F +M+ + PD T S+L+ + +LE +H +A
Sbjct: 491 SWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHA 550
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ GL S+ +A I MY +CGSI+ + +F K V+ V WNAMI G A G AL
Sbjct: 551 VETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREAL 610
Query: 291 KLLGEMNDSCVKADDITFIGLLSA 314
L +M D TFI +LSA
Sbjct: 611 SLFLQMQREGFIPDATTFINILSA 634
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 99/181 (54%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N L+ Y G ++ A ++F K+L KN+ W TM+ GY + + ++D+M+ +
Sbjct: 157 NKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQ 216
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ +T S+L AC +L+ G +IH + +G S+ TAL++MY KCGSIE + +
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLI 276
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K ++V W MI GLA +G G A L +M + T++ +L+A + AG +
Sbjct: 277 FDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL 336
Query: 322 Q 322
+
Sbjct: 337 E 337
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 160/482 (33%), Positives = 255/482 (52%), Gaps = 53/482 (10%)
Query: 33 HGQTIKTGFCGHVYVQTALL-----KMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
H Q + G + + LL ++GSL A+K+F+++ I N+M+ AF
Sbjct: 25 HAQVLTCGLGTDSFALSRLLAFCSHPLHGSL---PHAWKLFQQIQHPTICICNTMIKAFV 81
Query: 88 SCGQMDHAMKLIDLM------------P--LK-------------------------DVT 108
G++ + +++ M P LK D+
Sbjct: 82 LKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIF 141
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
N +I+ Y+ G + +AR IFD++P VSW +I Y G++E A +F + +K+
Sbjct: 142 VGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKD 201
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
W ++++GY+++ + E + +F M++ ++PD + S+L ACA+LG++E G +H
Sbjct: 202 RGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHR 261
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y G + +T LIDMYAKCGS++ + ++F +D CWNAMI G+A++G G
Sbjct: 262 YLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDN 321
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
AL+L EM + VK DDITFI + +ACS++G+ E L + M + + K EHYGC+V
Sbjct: 322 ALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIV 381
Query: 349 DLLGRARLLDRAIELIEAMP--FEPTESILG--ALLSACVIHQDLEIGDRVAKMVCAKSN 404
DLLGRA LL A ELI MP PTE + ALLSAC H E+ + A+ + +
Sbjct: 382 DLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHLEH 441
Query: 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ G ++ +NLYA+ G+ + R R MM + G+ K G S +++NG H+F+AG H
Sbjct: 442 H--SGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVKINGVVHEFIAGEETH 499
Query: 465 LS 466
L
Sbjct: 500 LQ 501
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 139/329 (42%), Gaps = 45/329 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G++ DNY+ P +LKA L S +G HGQ++K GF ++V L+ MY S
Sbjct: 96 MLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGN 155
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +F++MP ++W M+ +A G ++ A L D P+KD + +ISGY +
Sbjct: 156 VRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQN 215
Query: 121 GKIHSARYIFD----------------------KVPAKDVVSW----------------- 141
+F + A ++ W
Sbjct: 216 NCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLS 275
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
LI Y G ++ A ++F M ++ I WN M++G + + LF EM+ VK
Sbjct: 276 TGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVK 335
Query: 202 PDYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
PD +T ++ +AC+ G R ++ T + ++D+ + G ++++ E
Sbjct: 336 PDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKE 395
Query: 261 VFYK-----SQVKDVFCWNAMILGLALHG 284
+ K S + W A++ HG
Sbjct: 396 LILKMPNSSSPTEQAIAWRALLSACCSHG 424
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/471 (32%), Positives = 254/471 (53%), Gaps = 10/471 (2%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + LLKA G +G+ H + G V+V T+L+ MY +L A
Sbjct: 241 GLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSA 300
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARI 120
VF+ M + +I+WN+M+ + G + + L + D + +I G ++
Sbjct: 301 ALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQT 360
Query: 121 GKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
+ + R + + K++ S +++ Y+ G +++A +F +M KNVITW M+
Sbjct: 361 SDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAML 420
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G ++ + + LF +M+ V + +T+ S++ CA+LGSL G +H + +G A
Sbjct: 421 VGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYA 480
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKS-QVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ T+ALIDMYAKCG I + ++F +KDV N+MI+G +HG+G AL +
Sbjct: 481 FDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSR 540
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M + +K + TF+ LL+ACSH+GLV+EG LF ME+D V + +HY C+VDL RA
Sbjct: 541 MIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAG 600
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415
L+ A EL++ MPF+P+ +L ALLS C H++ +G ++A + + +YL+ G +M +
Sbjct: 601 RLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISL-DYLNSGIYVMLS 659
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
N+YA +WE N R +M G+ K G S+IEV + F A H S
Sbjct: 660 NIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPS 710
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 173/335 (51%), Gaps = 14/335 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + ++Y+ LKA L +G+ + ++ GF H+YV ++++
Sbjct: 136 MGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGY 195
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI------DLMPLKDVTSFNIM- 113
+ DA KVF+ MPEKD++ WNS++ + G ++++ L P VT N++
Sbjct: 196 LADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRP-SPVTMANLLK 254
Query: 114 ---ISGYARIGKI-HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
SG ++G HS Y+ DV SL+ Y+N G+ A +F M +++
Sbjct: 255 ACGQSGLKKVGMCAHS--YVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSL 312
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
I+WN M++GY+++ + E LF + D T+ S++ C+ LE G +H
Sbjct: 313 ISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSC 372
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
L S+ +TA++DMY+KCG+I+Q+ VF + K+V W AM++GL+ +GY A
Sbjct: 373 IIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDA 432
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
LKL +M + V A+ +T + L+ C+H G + +G
Sbjct: 433 LKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKG 467
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 133/306 (43%), Gaps = 18/306 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H Q IK ++ L+++Y L + A VF++ + N+M+ F Q
Sbjct: 66 IHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQ 125
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS----------- 140
+L +M S +I I+ Y + + + + D +++
Sbjct: 126 HMEVPRLFRMM-----GSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHL 180
Query: 141 --WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
+S++ G + A ++F M K+V+ WN+++ GY++ L+ E + +F EM G
Sbjct: 181 YVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGG 240
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
++P +T+ ++L AC G + G H Y G+ ++ T+L+DMY+ G +
Sbjct: 241 GLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSA 300
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
VF + + WNAMI G +G + L + S D T + L+ CS
Sbjct: 301 ALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQT 360
Query: 319 GLVQEG 324
++ G
Sbjct: 361 SDLENG 366
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 10/174 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQE V A++ + L+ L S G +H I+ G+ + +AL+ MY
Sbjct: 439 MQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGK 498
Query: 61 IDDAFKVF-EKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMIS 115
I A K+F + KD+I NSM+ + G +A+ ++I+ + T+F +++
Sbjct: 499 IHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLT 558
Query: 116 GYARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKM 164
+ G + + +F + V + L+ ++ AG +E+A E+ K+M
Sbjct: 559 ACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQM 612
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/448 (33%), Positives = 236/448 (52%), Gaps = 39/448 (8%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D ++F LL+A L S G +HG +K GF YV+ AL+ M
Sbjct: 96 LRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINM----------- 144
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
FA CG + A L+D DV +++ +I+G+A G + +
Sbjct: 145 --------------------FAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAA 184
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD+ KD+V WN ++ AY GEME A E+F + K+V++WNT++TGY +
Sbjct: 185 ARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGML 244
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--- 242
+++FDEM+A PD T+ S+LS CAN G L+ G IH L P +
Sbjct: 245 KHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIH---HQLHLERRPWISIVV 301
Query: 243 -TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301
AL+ MYAKCG + ++E F + DV+ WN++I GLA HG +++ +M + +
Sbjct: 302 GNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRI 361
Query: 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361
++I+F+ +L ACSHAGLV++G + F M+ +G+ HY C+VD+LGRA LLD A
Sbjct: 362 HPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAY 421
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
++ M EP+ + LL AC H ++ +G V + + N + + ++ + +YAS
Sbjct: 422 AIVSNMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLL-NMNEDASADYVLLSGIYASS 480
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIE 449
G+W R M+ GI K AG + I+
Sbjct: 481 GEWLGVETERRSMDRRGIRKAAGYAQID 508
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 138/324 (42%), Gaps = 45/324 (13%)
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G++ AR +FD +P D+ N+++ Y +AG A ++++M
Sbjct: 47 GRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRM---------------- 90
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+A ++PD T +L ACA L G ++H G + +
Sbjct: 91 --------------TEASRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAY 136
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
ALI+M+AKCG + + + ++ DV W+A+I G A G AA K+ D C
Sbjct: 137 VRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMF----DEC 192
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDLLGRARLLDR 359
D + + +L A + G ++ ELF R EKD + + ++ +L
Sbjct: 193 THKDIVCWNVMLGAYAKHGEMENARELFDRAPEKD------VVSWNTIITGYAAQGMLKH 246
Query: 360 AIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGELMMFA 415
A+E+ + M + P E+ + +LLS C L+ G + ++ + ++S
Sbjct: 247 ALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVGNALV 306
Query: 416 NLYASCGQWEEANRWRNMMNDTGI 439
++YA CG A N M DT +
Sbjct: 307 SMYAKCGDLHTAVEGFNTMKDTDV 330
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 250/448 (55%), Gaps = 15/448 (3%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +H Q I+ G ++ LL+ ID A ++F+ ++ + +++D F S
Sbjct: 49 LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSS 108
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYA---------RIGKIHSARYIFDKVPAKDVVS 140
G A++L M + N +++ R G+ +R + + + +V
Sbjct: 109 GNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVR 168
Query: 141 WNSLILAYTNAGEMEKAGEMFKKM----LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196
+ L Y GE+ A +F++M + K+ + W M+ G++R++ ++ F M+
Sbjct: 169 LRIMEL-YGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQ 227
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
NV+P+ T+ VLSAC+ LG+LE G +H Y + N ALI+MY++CGSI+
Sbjct: 228 GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSID 287
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
++ VF + + +DV +N MI GL+++G A++L M ++ ++TF+G+L+ACS
Sbjct: 288 EAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACS 347
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
H GLV G ++F M +D+GV ++EHYGCMVDLLGR L+ A +LI M P +L
Sbjct: 348 HGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIML 407
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
G LLSAC +H++LE+G++VAK++ + S G ++ +++YAS G+W+EA + R M +
Sbjct: 408 GTLLSACKMHKNLELGEQVAKVLEDRGQADS-GTYVLLSHVYASSGKWKEAAQVRAKMKE 466
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S IEVN H+FL G + H
Sbjct: 467 AGMQKEPGCSSIEVNNEIHEFLLGDLRH 494
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 170/343 (49%), Gaps = 21/343 (6%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
DNY +LKA G + G +H + +K G + V+ ++++YG + DA +V
Sbjct: 128 PDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRV 187
Query: 68 FEKMPE----KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV--TSFNI--MISGYAR 119
FE+MPE KD + W +M+D F +M+ A++ M ++V F I ++S ++
Sbjct: 188 FEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 247
Query: 120 IGKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+G + R++ + ++ N+LI Y+ G +++A +F +M ++VIT+NTM
Sbjct: 248 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 307
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI-HVYATDNG 234
++G + + ++LF M ++P +T VL+AC++ G ++ G +I H D G
Sbjct: 308 ISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYG 367
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNAMILGLALHG---YGYAAL 290
+ ++D+ + G +E++ ++ ++ D ++ +H G
Sbjct: 368 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 427
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
K+L + +AD T++ L + +G +E ++ ++M++
Sbjct: 428 KVLEDRG----QADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 466
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V + ++ +L A L + IG +H K +++V AL+ MY
Sbjct: 226 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGS 285
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID+A VF++M ++D+I +N+M+ + G+ A++L +M + + N+ G
Sbjct: 286 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVG---- 341
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
++ A ++ G ++ ++F M + + + M
Sbjct: 342 -----------------------VLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCM 378
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL 235
V R E DL MK + PD++ + ++LSAC +LE G ++ D G
Sbjct: 379 VDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQ 435
Query: 236 ASNPHATTALID-MYAKCGSIEQSLEVFYK 264
A + T L+ +YA G +++ +V K
Sbjct: 436 ADS--GTYVLLSHVYASSGKWKEAAQVRAK 463
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 239/447 (53%), Gaps = 14/447 (3%)
Query: 28 IGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
+G ++HG ++KTG G + ALL MY + ++F M +K++++W +M+ ++
Sbjct: 529 VGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYT 588
Query: 88 SCGQMDHAMKLIDLMPL----KDVTSFNIMISGYA-----RIGK-IHSARYIFDKVPAKD 137
G D L+ M L DV + ++ G+A + GK +H Y K
Sbjct: 589 RAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHG--YAIRNGMEKL 646
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
+ N+L+ Y N ME+A +F + K++I+WNT++ GY R+ E LF +M
Sbjct: 647 LPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLL 706
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
KP+ +T+T +L A A++ SLE G IH YA G + + + AL+DMY KCG++
Sbjct: 707 -QFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLV 765
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +F + K++ W MI G +HG G A+ L +M S V+ D +F +L AC H
Sbjct: 766 ARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCH 825
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+GL EG + F+ M K++ + KL+HY C+VDLL L A E IE+MP EP SI
Sbjct: 826 SGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWV 885
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
+LL C IH+D+++ ++VA V K + G ++ AN+YA +WE + +N +
Sbjct: 886 SLLHGCRIHRDVKLAEKVADRV-FKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGR 944
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ + G S IEV G H F+A H
Sbjct: 945 GLRENTGCSWIEVRGKVHVFIADNRNH 971
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 167/336 (49%), Gaps = 11/336 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M ELG+ D ++ LLK LS + GL+ HG +K GF V AL+ Y
Sbjct: 401 MHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNM 460
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
ID+A VF++MP +D I+WNS++ S G A++L M ++ D T+ ++
Sbjct: 461 IDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPA 520
Query: 117 YAR-----IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
AR +G++ + + + ++ N+L+ Y+N + ++F+ M KNV++
Sbjct: 521 CARSHYWFVGRVVHGYSVKTGLIGETSLA-NALLDMYSNCSDWHSTNQIFRNMAQKNVVS 579
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W M+T Y R+ L+ +V L EM +KPD VTSVL A SL+ G +H YA
Sbjct: 580 WTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAI 639
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
NG+ AL++MY C ++E++ VF KD+ WN +I G + + + +
Sbjct: 640 RNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFS 699
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
L +M K + +T +L A + ++ G E+
Sbjct: 700 LFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREI 734
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 151/336 (44%), Gaps = 18/336 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D ++ +LK L S G ++HG K G V AL+ +Y C
Sbjct: 189 MQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGC 248
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMIS 115
++DA +VF+ M +D I+WNS + + S G D A+ L M + VT +++ +
Sbjct: 249 MEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPA 308
Query: 116 ----GYARIGKI-----HSARYIFDKVPAK---DVVSWNSLILAYTNAGEMEKAGEMFKK 163
G+ +GK+ + ++D + D + L+ Y G+M A +F
Sbjct: 309 CAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDA 368
Query: 164 MLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222
M K NV WN ++ GY ++ + E + LF++M + PD ++ +L L
Sbjct: 369 MPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARD 428
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G H Y G + ALI YAK I+ ++ VF + +D WN++I G
Sbjct: 429 GLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTS 488
Query: 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+G A++L M + D T + +L AC+ +
Sbjct: 489 NGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 190/448 (42%), Gaps = 68/448 (15%)
Query: 58 LRCID--DAFKVFEKMPEK--DIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTS 109
L+C D A VF++MP + D+ W S++ A+A G + L M D +
Sbjct: 141 LKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHA 200
Query: 110 FNIMISGYARIGKIHSARYI---FDKVPAKDVVS-WNSLILAYTNAGEMEKAGEMFKKML 165
+ ++ A +G I I +K+ + + N+LI Y+ G ME A ++F M
Sbjct: 201 VSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMH 260
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
++ I+WN+ ++GY + + VDLF +M + + +TV SVL ACA LG G
Sbjct: 261 ARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKV 320
Query: 226 IHVYATDNGLASNPHATTALID---------MYAKCGSIEQSLEVFYKSQVK-DVFCWNA 275
+H Y+ +GL + + + ID MY KCG + + VF K +V WN
Sbjct: 321 VHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNL 380
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS-----ACSHAGLVQEGCELFSR 330
++ G A +L L +M++ + D+ LL +C+ GLV G +
Sbjct: 381 IMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLV--- 437
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT---ESILGALLSACVIHQ 387
G + ++ ++ ++D A+ + + MP + T S++ S + +
Sbjct: 438 ---KLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSE 494
Query: 388 DLEIGDRVAKM--------------VCAKSNYLSDGELM-----------------MFAN 416
+E+ R+ CA+S+Y G ++ +
Sbjct: 495 AIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLD 554
Query: 417 LYASCGQWEEANR-WRNMMNDTGIVKTA 443
+Y++C W N+ +RNM + TA
Sbjct: 555 MYSNCSDWHSTNQIFRNMAQKNVVSWTA 582
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 2/179 (1%)
Query: 144 LILAYTNAGEMEKAGEMFKKM--LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
L+LAY G++ A +F +M V +V W ++++ Y ++ + E V LF +M+ V
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD V+ VL A+LGS+ G IH GL ALI +Y++CG +E +++V
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F +D WN+ I G +G+ A+ L +M + +T + +L AC+ G
Sbjct: 256 FDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGF 314
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 139/315 (44%), Gaps = 18/315 (5%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHV-YVQTALLKMYGS------LRCID--DAFK 66
+L A L +G ++HG ++K+G + VQ+ + + GS ++C D A +
Sbjct: 305 VLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARR 364
Query: 67 VFEKMPEK-DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR-IGKIH 124
VF+ MP K ++ WN ++ +A + + ++ L + M +T +S + I +
Sbjct: 365 VFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLS 424
Query: 125 SAR-------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
AR Y+ N+LI Y + ++ A +F +M ++ I+WN++++
Sbjct: 425 CARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVIS 484
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
G + L E ++LF M + D T+ SVL ACA G +H Y+ GL
Sbjct: 485 GCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIG 544
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
AL+DMY+ C + ++F K+V W AMI G LL EM
Sbjct: 545 ETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMV 604
Query: 298 DSCVKADDITFIGLL 312
+K D +L
Sbjct: 605 LDGIKPDVFAVTSVL 619
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L A +SS G +H ++ GF Y AL+ MY + A +F+++ +K+
Sbjct: 718 ILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKN 777
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGKIHSARYIFD 131
+I+W M+ + G A+ L + M D SF+ ++ G F+
Sbjct: 778 LISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFN 837
Query: 132 ------KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTG 178
K+ K + + ++ ++ G +++A E + M ++ + W +++ G
Sbjct: 838 AMRKEYKIEPK-LKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHG 890
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/435 (34%), Positives = 236/435 (54%), Gaps = 9/435 (2%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG- 90
+HG + GF V A + Y +D A +VF M K + +WN+++ A A G
Sbjct: 423 IHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGF 482
Query: 91 ---QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR----YIFDKVPAKDVVSWNS 143
+D + ++D D + ++ AR+ + + ++ D S
Sbjct: 483 PGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGIS 542
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
L+ Y M +F KM K+++ WN M+TG+ +++L E +D F +M +G +KP
Sbjct: 543 LMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQ 602
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ VT VL AC+ + +L G +H +A L+ + T ALIDMYAKCG +EQS +F
Sbjct: 603 EIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFD 662
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ KD WN +I G +HG+G A++L M + + D TF+G+L AC+HAGLV E
Sbjct: 663 RVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTE 722
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G + +M+ +GV KLEHY C+VD+LGRA L A++L+ MP EP I +LLS+C
Sbjct: 723 GLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSC 782
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
+ DLEIG+ V+K + ++ +++ +NLYA G+W+E + R M + G+ K A
Sbjct: 783 RNYGDLEIGEEVSKKLLELEPNKAENYVLL-SNLYAGLGKWDEVRKVRQRMKENGLHKDA 841
Query: 444 GSSVIEVNGSYHKFL 458
G S IE+ G ++FL
Sbjct: 842 GCSWIEIGGMVYRFL 856
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/480 (25%), Positives = 210/480 (43%), Gaps = 59/480 (12%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
DN++ P + KA ++ +G +H +K G +V AL+ MYG ++ A KVF
Sbjct: 194 DNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVF 253
Query: 69 EKMPEKDIIAWNSMLDAFAS-------CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
E M +++++WNS++ A + CG + + + DV + +I A +G
Sbjct: 254 ETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVG 313
Query: 122 KIHSARYI----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
++ + F ++V NSL+ Y+ G + +A +F KNV++WNT++
Sbjct: 314 EVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIW 373
Query: 178 GYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
GY + + V +L EM + V+ + +TV +VL AC+ L + IH YA +G
Sbjct: 374 GYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFL 433
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ A + YAKC S++ + VF + K V WNA+I A +G+ +L L M
Sbjct: 434 KDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVM 493
Query: 297 NDSCVKADDITFIGLLSACS-----------HAGLVQEGCEL------------------ 327
DS + D T LL AC+ H +++ G EL
Sbjct: 494 MDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSM 553
Query: 328 ------FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGA 378
F +ME + L + M+ + L A++ M +P E +
Sbjct: 554 LLGKLIFDKME-----NKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTG 608
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA--NLYASCGQWEEANRWRNMMND 436
+L AC L +G V A +LS+ + A ++YA CG E++ + +N+
Sbjct: 609 VLGACSQVSALRLGKEVHSF--ALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNE 666
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 159/339 (46%), Gaps = 13/339 (3%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
+E G+ D + ++ A + +G+++HG K G V V +L+ MY +
Sbjct: 291 EEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYL 350
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP------LKDVTSFNIM-- 113
+A +F+ K++++WN+++ ++ G +L+ M + +VT N++
Sbjct: 351 GEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPA 410
Query: 114 ISGYAR---IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
SG + + +IH Y F KD + N+ + AY ++ A +F M K V
Sbjct: 411 CSGEHQLLSLKEIHG--YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVS 468
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN ++ + ++ + +DLF M + PD T+ S+L ACA L L G IH +
Sbjct: 469 SWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFM 528
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
NGL + +L+ +Y +C S+ +F K + K + CWN MI G + + AL
Sbjct: 529 LRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEAL 588
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+M +K +I G+L ACS ++ G E+ S
Sbjct: 589 DTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHS 627
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 150/316 (47%), Gaps = 14/316 (4%)
Query: 15 LLLKAAGILSSSCIGLMLHG-QTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE 73
+LL+A G + +G +H + V + T ++ MY + D+ VF+ E
Sbjct: 97 ILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKE 156
Query: 74 KDIIAWNSMLDAFASCGQMDHAMKL-IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDK 132
KD+ +N++L ++ A+ L ++L+ D+ N + A+ + + +
Sbjct: 157 KDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEA 216
Query: 133 VPA--------KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
V A D N+LI Y G +E A ++F+ M +N+++WN+++ +
Sbjct: 217 VHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGG 276
Query: 185 YIEVVDLFDEM---KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241
+ E +F + + + PD T+ +V+ ACA +G + G +H A G+
Sbjct: 277 FGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTV 336
Query: 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN-DSC 300
+L+DMY+KCG + ++ +F + K+V WN +I G + G +LL EM +
Sbjct: 337 NNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEK 396
Query: 301 VKADDITFIGLLSACS 316
V+ +++T + +L ACS
Sbjct: 397 VRVNEVTVLNVLPACS 412
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 16/264 (6%)
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKK 163
+ I++ IH R + V A DVV +I Y+ G + +F
Sbjct: 94 AIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDA 153
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLET 222
K++ +N +++GY R+ L+ + + LF E+ A ++ PD T+ V ACA + +E
Sbjct: 154 AKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVEL 213
Query: 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLAL 282
G +H A G S+ ALI MY KCG +E +++VF + +++ WN+++ +
Sbjct: 214 GEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSE 273
Query: 283 H-GYGY--AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
+ G+G K L + + D T + ++ AC+ G V+ G + K G+T
Sbjct: 274 NGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFK-LGITE 332
Query: 340 KLEHYGCMVDL------LGRARLL 357
++ +VD+ LG AR L
Sbjct: 333 EVTVNNSLVDMYSKCGYLGEARAL 356
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 35/227 (15%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ + +L A +S+ +G +H +K +V AL+ MY C++ +
Sbjct: 598 GIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQS 657
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
+F+++ EKD WN ++ + G H +K I+L F +M + R
Sbjct: 658 QNIFDRVNEKDEAVWNVIIAGY---GIHGHGLKAIEL--------FELMQNKGGR----- 701
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA----GEMFKKMLVKNVITWNTMVTGYL 180
D ++ +++A +AG + + G+M VK + V L
Sbjct: 702 -----------PDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDML 750
Query: 181 -RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
R+ E + L +EM +PD +S+LS+C N G LE G +
Sbjct: 751 GRAGQLTEALKLVNEMPD---EPDSGIWSSLLSSCRNYGDLEIGEEV 794
>gi|115450020|ref|NP_001048611.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|48716334|dbj|BAD22946.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
Japonica Group]
gi|113538142|dbj|BAF10525.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|125584254|gb|EAZ25185.1| hypothetical protein OsJ_08985 [Oryza sativa Japonica Group]
Length = 500
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/425 (36%), Positives = 230/425 (54%), Gaps = 26/425 (6%)
Query: 64 AFKVFEKMPEKDIIAWNS----------MLDAFASCGQMDHA---------MKLIDLMPL 104
A ++F ++ + IIA N +L A AS + HA + + ++
Sbjct: 60 ALRLFPRL--RRIIATNPFFPNAYTFSFLLTASASLAPLPHAASPRVLVESLHALAILVA 117
Query: 105 KDVTSF--NIMISGYARIGKIHSARYIFD-KVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
D ++ N +I YA + SAR +FD V +DV SW SL+ AY A + A +F
Sbjct: 118 CDAHAYVSNGLIHAYASCALLCSARRVFDVNVSCRDVCSWTSLLTAYGRAARLHHARALF 177
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
M K I W +++ Y+ + + E VD+F EM V+P+ + SVL+AC LG+LE
Sbjct: 178 DAMPHKTTIAWAAILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAACGALGALE 237
Query: 222 TGARIHVY--ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
G +H + A +A + TAL+DMYAKCGS+E + +VF +DVF + AM+ G
Sbjct: 238 QGRWVHAHLVAAHGAMAKDGMVATALVDMYAKCGSLETARQVFSGMAERDVFAYTAMVSG 297
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
L+ HG A++L G M + V+ +++TFI +LSAC AGLV E+ M G+
Sbjct: 298 LSDHGRCVEAIELFGRMQEEGVRPNEVTFICVLSACGRAGLVGRAREILGSMSAVHGMEA 357
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
+EHYG MVD+LGRA +++ A+E++ MP P +LGALL+ACV D E G+ VA M+
Sbjct: 358 GVEHYGSMVDVLGRAGMVEEALEVVRRMPMRPDSYVLGALLNACVARGDTEGGEEVAAMM 417
Query: 400 CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
G + +NLYA G+WEE R M + +VK G S++EV+G +F+A
Sbjct: 418 AELGLDDRSGVQVQLSNLYAGRGKWEEVVGVRRGMEERKVVKVPGCSMVEVDGVAREFVA 477
Query: 460 GGIGH 464
G H
Sbjct: 478 GDRSH 482
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 133/320 (41%), Gaps = 51/320 (15%)
Query: 9 DNYSFPLLLKAAGIL-------SSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61
+ Y+F LL A+ L S + LH I H YV L+ Y S +
Sbjct: 79 NAYTFSFLLTASASLAPLPHAASPRVLVESLHALAILVACDAHAYVSNGLIHAYASCALL 138
Query: 62 DDAFKVFE-KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A +VF+ + +D+ +W S+L A+ ++ HA L D MP K ++ ++S Y
Sbjct: 139 CSARRVFDVNVSCRDVCSWTSLLTAYGRAARLHHARALFDAMPHKTTIAWAAILSAYVGA 198
Query: 121 GKIHSARYIFDKV------P-----------------------------------AKDVV 139
G A +F ++ P AKD +
Sbjct: 199 GSFAEAVDVFQEMLRARVRPNRAVILSVLAACGALGALEQGRWVHAHLVAAHGAMAKDGM 258
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
+L+ Y G +E A ++F M ++V + MV+G +E ++LF M+
Sbjct: 259 VATALVDMYAKCGSLETARQVFSGMAERDVFAYTAMVSGLSDHGRCVEAIELFGRMQEEG 318
Query: 200 VKPDYLTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
V+P+ +T VLSAC G + I + +G+ + +++D+ + G +E++
Sbjct: 319 VRPNEVTFICVLSACGRAGLVGRAREILGSMSAVHGMEAGVEHYGSMVDVLGRAGMVEEA 378
Query: 259 LEVFYKSQVK-DVFCWNAMI 277
LEV + ++ D + A++
Sbjct: 379 LEVVRRMPMRPDSYVLGALL 398
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 258/476 (54%), Gaps = 16/476 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G++ D+ + +L L ++H IK G ++V AL+ MY
Sbjct: 264 MRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGN 323
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI----------DLMPLKDVTSF 110
+ DA KVF++M +D+++WNS++ A+ A DL+ L + S
Sbjct: 324 LGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASI 383
Query: 111 NIMISGYARIGKIHSARYIFDK-VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
Y +H +I + + VV N+++ Y G ++ A ++F + VK+V
Sbjct: 384 AAQSRDYKNSRSVHG--FIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDV 441
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHV 228
++WNT+++GY ++ L E ++++ M+ +K + T S+L+A A++G+L+ G RIH
Sbjct: 442 VSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHG 501
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ L + T LID+Y KCG + ++ +FY+ + WNA+I +HG+G
Sbjct: 502 HLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEK 561
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
ALKL EM D VK D +TFI LLSACSH+GLV EG F M+ ++G+ L+HYGCMV
Sbjct: 562 ALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-EYGIKPSLKHYGCMV 620
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DLLGRA L+ A + I+ MP P SI GALL AC IH ++E+G + A + + +
Sbjct: 621 DLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELG-KFASDRLFEVDSENV 679
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G ++ +N+YA+ G+WE ++ R++ + G+ KT G S IEVN F G H
Sbjct: 680 GYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSH 735
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 116/449 (25%), Positives = 217/449 (48%), Gaps = 27/449 (6%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
AD Y+FP +LKA L G +H K GF V+V +L+ MY + A
Sbjct: 172 QADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARS 228
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----ARIGK 122
+F+ MP +D+ +WN+M+ G A+ ++D M L+ + ++ ++ A++G
Sbjct: 229 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGD 288
Query: 123 IHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
I +A Y+ ++ N+LI Y G + A ++F++M +++V++WN+++
Sbjct: 289 ISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAA 348
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LAS 237
Y ++ + F +M+ ++PD LT+ S+ S A + +H + G L
Sbjct: 349 YEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLME 408
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
A++DMYAK G I+ + +VF VKDV WN +I G +G A+++ M
Sbjct: 409 AVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVY-RMM 467
Query: 298 DSC--VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY--GCMVDLLGR 353
+ C +K + T++ +L+A +H G +Q+G + + K L+ + C++DL G+
Sbjct: 468 EECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIK---TNLHLDVFVGTCLIDLYGK 524
Query: 354 ARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413
L A+ L +P E + A++S IH G++ K+ + + +
Sbjct: 525 CGRLVDAMCLFYQVPRESSVP-WNAIISCHGIHGH---GEKALKLFREMQDEGVKPDHVT 580
Query: 414 FANLYASC---GQWEEANRWRNMMNDTGI 439
F +L ++C G +E + ++M + GI
Sbjct: 581 FISLLSACSHSGLVDEGKWFFHLMQEYGI 609
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 141/297 (47%), Gaps = 14/297 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH + +G ++ L+ +Y SL + + F+++ KD+ WNSM+ A+ G
Sbjct: 95 LHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGH 154
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARI----------GKIHSARYIFDKVPAKDVVSW 141
A+ + L VT F + + KIH ++F DV
Sbjct: 155 FREAIDCFYQLLL--VTKFQADFYTFPPVLKACQTLVDGRKIHC--WVFKLGFQWDVFVA 210
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
SLI Y+ G + A +F M +++ +WN M++G +++ + +D+ DEM+ +
Sbjct: 211 ASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIN 270
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D +TV S+L CA LG + T IH+Y +GL + ALI+MYAK G++ + +V
Sbjct: 271 MDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKV 330
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
F + ++DV WN++I + A +M + ++ D +T + L S + +
Sbjct: 331 FQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQS 387
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
R+H +G + + L+++YA G + S F + Q KDV+ WN+MI +G
Sbjct: 94 RLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNG 153
Query: 285 YGYAALKLLGE-MNDSCVKADDITFIGLLSACSHAGLVQEG----CELFSR-MEKDFGVT 338
+ A+ + + + +AD TF +L AC + +G C +F + D V
Sbjct: 154 HFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ---TLVDGRKIHCWVFKLGFQWDVFVA 210
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
L H +G AR L + MPF
Sbjct: 211 ASLIHMYSRFGFVGIAR------SLFDDMPFR 236
>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Vitis vinifera]
Length = 748
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 166/508 (32%), Positives = 260/508 (51%), Gaps = 57/508 (11%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ DN+++P +LKA G G +H + + V AL+ MYG
Sbjct: 192 MVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGK 251
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISG 116
+ A +F+K+PE+D ++WNSM+ +AS G + A +L M +D+ +N + G
Sbjct: 252 VGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGG 311
Query: 117 YARIGKIHSA--------------------------RYIFDKVPAKDVVSW--------- 141
Y R G A +I D K++ S+
Sbjct: 312 YLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEV 371
Query: 142 ----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
N+LI Y+ +++ A +F+ M K++ITWN++++G E L EM
Sbjct: 372 DTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLL 431
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYAT------DNGLASNPHATTALIDMYAK 251
++P+Y+T+ SVL CA + +L+ G H Y T D+ L N AL+DMYA+
Sbjct: 432 FGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWN-----ALVDMYAR 486
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311
G + ++ VF +D + +MI G + G G AALKL EMN+ +K D IT I +
Sbjct: 487 SGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAV 546
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP 371
LSACSH+GLV +G LF +M +G+T LEH+ CM DL GRA LL++A E+I MP++P
Sbjct: 547 LSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKP 606
Query: 372 TESILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRW 430
T ++ L+ AC IH++ EIG+ A K++ K + G ++ AN+YA+ G W + +
Sbjct: 607 TPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPE--NPGYYVLIANMYAAAGCWNKLAKV 664
Query: 431 RNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
R M D G+ K G + ++V + FL
Sbjct: 665 RIFMRDLGVRKAPGCAWVDVGTGFSPFL 692
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 164/399 (41%), Gaps = 50/399 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCI-------GLMLHGQTIKTGFCGHVYVQTALLKMYGSL 58
+HA + S L++ L SSC G LHG I GF H + L+ Y +
Sbjct: 89 LHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAF 148
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS--------- 109
+ DA + E WN ++ ++ G A+ M K +
Sbjct: 149 NLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVL 208
Query: 110 ------------------------------FNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N +IS Y + GK+ AR +FDK+P +D V
Sbjct: 209 KACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAV 268
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVK----NVITWNTMVTGYLRSQLYIEVVDLFDEM 195
SWNS+I Y + G +A E+F M + N+I WNT+ GYLR+ Y ++L +M
Sbjct: 269 SWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQM 328
Query: 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255
+ D + + L AC+++G + G IH +A + ALI MY++C +
Sbjct: 329 RKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDL 388
Query: 256 EQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
+ + +F + K + WN++I G A LL EM ++ + +T +L C
Sbjct: 389 KHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLC 448
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+ +Q G E M + L + +VD+ R+
Sbjct: 449 ARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARS 487
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 160/445 (35%), Positives = 232/445 (52%), Gaps = 18/445 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRC--IDDAFKVFEKMPEKDIIAWNSMLDAFAS- 88
+H ++ G + V +A + MY +RC IDDA +F+K+ +++ WN+M+ A
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMY--IRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQ 414
Query: 89 -CG--------QMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
CG QM D ++ S N+ + ++HS Y D D+
Sbjct: 415 KCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHS--YAID-AGLVDLR 471
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
N+L+ Y G A ++F M+ +NV TW M++G + E LF +M
Sbjct: 472 VGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG 531
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+ PD T S+LSACA+ G+LE +H +A + GL S+ AL+ MYAKCGS++ +
Sbjct: 532 IVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDAR 591
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
VF +DV+ W MI GLA HG G AL L +M K + +F+ +LSACSHAG
Sbjct: 592 RVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAG 651
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
LV EG F + +D+G+ +EHY CMVDLLGRA L+ A I MP EP ++ GAL
Sbjct: 652 LVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGAL 711
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L ACV + +LE+ + AK K S ++ +N+YA+ G WE+ R+MM GI
Sbjct: 712 LGACVTYGNLEMAEFAAKERL-KLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGI 770
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGH 464
K G S IEV+ H F+ G H
Sbjct: 771 RKEPGRSWIEVDNQIHSFVVGDTSH 795
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 159/325 (48%), Gaps = 14/325 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G + ++ +LKA S G +H I++GF V V+TAL+ MY
Sbjct: 21 MRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGS 80
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA------MKLIDLMP----LKDVTSF 110
IDDA +F+KM E+++I+W M+ A G+ A M+ +P + +
Sbjct: 81 IDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNA 140
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N + ++HS + + A D+ N+L+ Y +G ++ A +F M+ +++
Sbjct: 141 NASAGALEWVKEVHS--HAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIF 198
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA--NLGSLETGARIHV 228
+W M+ G + E LF +M+ G P+ T S+L+A A + G+LE +H
Sbjct: 199 SWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHK 258
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+A G S+ ALI MYAKCGSI+ + VF +DV WNAMI GLA +G G+
Sbjct: 259 HAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHE 318
Query: 289 ALKLLGEMNDSCVKADDITFIGLLS 313
A + +M D T++ LL+
Sbjct: 319 AFTIFLKMQQEGFVPDSTTYLSLLN 343
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 123/472 (26%), Positives = 201/472 (42%), Gaps = 44/472 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G ++Y++ +L A + +H + G + V AL+ MY
Sbjct: 122 MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGS 181
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
IDDA VF+ M E+DI +W M+ A G+ A L M L ++T++ +++
Sbjct: 182 IDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA 241
Query: 117 YA--RIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A G + + + +S N+LI Y G ++ A +F M ++VI
Sbjct: 242 SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVI 301
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN M+ G ++ E +F +M+ PD T S+L+ + G+ E +H +A
Sbjct: 302 SWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHA 361
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ GL S+ +A + MY +CGSI+ + +F K V++V WNAMI G+A G AL
Sbjct: 362 VEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREAL 421
Query: 291 KLLGEMNDSCVKADDITFIGLLSA----------------CSHAGLV------------- 321
L +M D TF+ +LSA AGLV
Sbjct: 422 SLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYA 481
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGA 378
+ G ++++ D V R + + M+ L + A L M E P + +
Sbjct: 482 KCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVS 541
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEANR 429
+LSAC LE V + +SD + ++YA CG ++A R
Sbjct: 542 ILSACASTGALEWVKEVHSH-AVNAGLVSDLRVGNALVHMYAKCGSVDDARR 592
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 18/248 (7%)
Query: 82 MLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMISGYARIG-----KIHSARYIFD 131
M+ +A G + AMK+ M + ++T +I+ + + + KIH+ +I
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHA--HIIQ 58
Query: 132 KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG---YLRSQLYIEV 188
DV +L+ Y G ++ A +F KM+ +NVI+W M+ G Y R Q E
Sbjct: 59 SGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQ---EA 115
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248
F +M+ P+ T S+L+A A+ G+LE +H +A + GLA + AL+ M
Sbjct: 116 FHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHM 175
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YAK GSI+ + VF +D+F W MI GLA HG G A L +M + T+
Sbjct: 176 YAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTY 235
Query: 309 IGLLSACS 316
+ +L+A +
Sbjct: 236 LSILNASA 243
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/444 (34%), Positives = 241/444 (54%), Gaps = 15/444 (3%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H ++ GF V V TA+L +Y +D A KVF+ M +++ ++WN+M+ +A G
Sbjct: 349 VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGD 408
Query: 92 MDHAMKLIDLMPLK--DVTSFNIMISGYA--RIGKIHSARYIFDKVP----AKDVVSWNS 143
A+ L M + DVT +++ + +A +G + R + + + +V N+
Sbjct: 409 ATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNA 468
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y + A ++F ++ K ++WN M+ G ++ + V LF M+ NVKPD
Sbjct: 469 LITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPD 528
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
T+ S++ A A++ IH Y+ L + + TALIDMYAKCG + + +F
Sbjct: 529 SFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFN 588
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
++ + V WNAMI G HG G A++L EM S ++ TF+ +LSACSHAGLV E
Sbjct: 589 SARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDE 648
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSAC 383
G E FS M++D+G+ +EHYG MVDLLGRA L A I+ MP EP S+ GA+L AC
Sbjct: 649 GQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGAC 708
Query: 384 VIHQDLEIGDRVAKMVCAKSNYLSDGE---LMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+H+++E+ + A+ + L E ++ AN+YA+ W++ R R M G+
Sbjct: 709 KLHKNVELAEESAQRIFE----LEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQ 764
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
KT G S++++ H F +G H
Sbjct: 765 KTPGWSIVQLKNEIHTFYSGSTNH 788
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 1/169 (0%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACA 215
A +F +M ++ + WN +V GY R+ L V + M+ + +PD +T+ SVL ACA
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338
Query: 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNA 275
+ +L +H +A G + +TA++D+Y KCG+++ + +VF Q ++ WNA
Sbjct: 339 DAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNA 398
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
MI G A +G AL L M V D++ + L AC G + EG
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG 447
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 130/289 (44%), Gaps = 10/289 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + S L A G L G +H ++ G +V V AL+ MY + D A
Sbjct: 423 GVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLA 482
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT--SFNI--MISGYARI 120
+VF+++ K ++WN+M+ G + A++L M L++V SF + +I A I
Sbjct: 483 AQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADI 542
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
AR+I +DV +LI Y G + A +F ++VITWN M+
Sbjct: 543 SDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMI 602
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR-IHVYATDNGL 235
GY V+LF+EMK+ P+ T SVLSAC++ G ++ G D GL
Sbjct: 603 HGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGL 662
Query: 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILGLALH 283
++D+ + G + ++ K ++ + + AM+ LH
Sbjct: 663 EPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLH 711
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P T TS+L CA L TG +H GL+ A TAL +MYAKC + V
Sbjct: 223 PVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRV 282
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS-CVKADDITFIGLLSACSHA 318
F + +D WNA++ G A +G AA+ ++ M + + D +T + +L AC+ A
Sbjct: 283 FDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADA 340
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D+++ ++ A +S +HG +I+ VYV TAL+ MY
Sbjct: 520 MQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGR 579
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM----PLKDVTSFNIMISG 116
+ A +F ++ +I WN+M+ + S G A++L + M + + T+F ++S
Sbjct: 580 VSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSA 639
Query: 117 YARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ G + + F + + + +++ AG++ +A +KM ++ I+
Sbjct: 640 CSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGIS 699
>gi|242095130|ref|XP_002438055.1| hypothetical protein SORBIDRAFT_10g007350 [Sorghum bicolor]
gi|241916278|gb|EER89422.1| hypothetical protein SORBIDRAFT_10g007350 [Sorghum bicolor]
Length = 587
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 244/447 (54%), Gaps = 24/447 (5%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
LL+A +S LH K G + + TALL Y + A +VF++MP +D
Sbjct: 13 LLRAITACTSCREAQALHSLACKLGLASDMVISTALLTRYAKRGLVARAQRVFDEMPRRD 72
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD---K 132
++A N+ML A + G++ A L M + S+N M++ Y R G + SAR +F+ +
Sbjct: 73 VVAINAMLAALGATGRVTDARALFGRMSYRTPASWNTMVTCYCRAGDLTSARDVFEASLR 132
Query: 133 VPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM--LVKNVITWNTMVTGYLRSQLYIEVVD 190
+ VVSWN++I Y AG M+ A E+F +M + +VITWNTM+ GYLR +
Sbjct: 133 AMSSSVVSWNAMIDGYCKAGRMDAARELFDRMGSSLPDVITWNTMMAGYLRGGDPASAIA 192
Query: 191 LF----DEMKAG--NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
+F + G ++P T+ +V++ACA +G+L G +IH G+ + + A
Sbjct: 193 MFHLLMRTQREGEQRLRPTNGTMATVVAACAQVGNLALGRQIHHLIQQKGIWIDTVLSNA 252
Query: 245 LIDMYAKCGSIEQSLEVFY---KSQVKDVFCWNAMILGLALHGYGYAALKLL-------G 294
L+DMY K GS++ +L+VF + + ++FCWN +I GL ++G+G A+ G
Sbjct: 253 LMDMYFKSGSVDCALDVFRAMPRPRSPNLFCWNTVISGLGMNGHGEDAIAAFHDMVEGRG 312
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
+N + VK D +TF+ LLSACSH+GLV E + FS+M +G+ + EHYGCMVDLL RA
Sbjct: 313 RLNGNSVKPDGVTFVALLSACSHSGLVLEARKFFSQMLPVYGLPPQPEHYGCMVDLLCRA 372
Query: 355 RLLDRAIELIEAMPFEPTESILGA-LLSACVIHQDLEIGDRVAKMVCAKSNYLS--DGEL 411
+D A L++ MP P +LG+ LL A V + E G R+++ + + L DG
Sbjct: 373 GHVDEAARLVQTMPGRPNAKVLGSLLLDARVSERWQEGGVRLSEWAARRISRLDLHDGAA 432
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTG 438
+N+YAS +W+ R + G
Sbjct: 433 YGLSNVYASLQRWDRVEEHRRQVRAAG 459
>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 908
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/429 (34%), Positives = 228/429 (53%), Gaps = 17/429 (3%)
Query: 51 LLKMYGSLRCIDDAFKVFEKMP--------------EKDIIAWNSMLDAFASCGQMDHAM 96
L+ YG DA ++F+ +P E+++++WNSM+ + G + A
Sbjct: 236 LIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSAR 295
Query: 97 KLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
L + MP KD+ S+N MISGY + + + +F ++P D VSWN +I + GE E
Sbjct: 296 ALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEH 355
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A F +M + I+WNTM++GY ++ YI V LF +M PD T +SVL+ACA+
Sbjct: 356 ARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACAS 415
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCWNA 275
+ L GA+IH + + + ALI MY++CG++ + +F + KD+ WNA
Sbjct: 416 IPMLGLGAQIHQL-VEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNA 474
Query: 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF 335
+I HG AL+L EM + V ITF+ LLSAC +AGLV EG +F M ++
Sbjct: 475 LIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEY 534
Query: 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395
G+ ++EHY +V+L+GR LD A+E+I +MP P S+ GA L AC ++ +
Sbjct: 535 GIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMA 594
Query: 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYH 455
AK + N S ++ NL+A G+W A R M GI K G S I++ G H
Sbjct: 595 AKELST-INPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMH 653
Query: 456 KFLAGGIGH 464
F++G H
Sbjct: 654 VFISGDTWH 662
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 155/320 (48%), Gaps = 38/320 (11%)
Query: 50 ALLK--MYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV 107
ALL+ YG+ R ++F+ +P + ++ WNS+L A A + D MP++D
Sbjct: 45 ALLRAGRYGAAR------RLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDA 98
Query: 108 TSFNIMISGYA---RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164
S+N +++ Y+ + +AR +FD++P +DVV+WN+L+ AY G M++A +F +M
Sbjct: 99 VSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEM 158
Query: 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
+N +WNTMVTG+ + ++ +D+FD M A D ++++++S G L
Sbjct: 159 PQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAK----DSASLSTMVSGFTKNGMLHEAE 214
Query: 225 RI---HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF--------------YKSQV 267
+ + TD A + + T LI Y + G + +F K
Sbjct: 215 ELLTKRLSVTDMDKAVDAYNT--LIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFE 272
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
++V WN+M++ G +A L EM D D +++ ++S + A ++E +L
Sbjct: 273 RNVVSWNSMMICYIKAGDVCSARALFNEMPDK----DLVSWNTMISGYTQASDMKESEKL 328
Query: 328 FSRMEKDFGVTRKLEHYGCM 347
F M V+ L G M
Sbjct: 329 FWEMPDPDTVSWNLIIQGFM 348
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 145/310 (46%), Gaps = 27/310 (8%)
Query: 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104
V LL Y +D+A ++F++MP+++ +WN+M+ F + GQ+ A+ + D MP
Sbjct: 132 VVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPA 191
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGE 159
KD S + M+SG+ + G +H A + K + K V ++N+LI+AY AG A
Sbjct: 192 KDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKR 251
Query: 160 MF--------------KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
+F +K +NV++WN+M+ Y+++ LF+EM D +
Sbjct: 252 LFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMP----DKDLV 307
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ +++S ++ ++ D S +I + + G E + F +
Sbjct: 308 SWNTMISGYTQASDMKESEKLFWEMPDPDTVS----WNLIIQGFMQKGEAEHARGFFDRM 363
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ WN MI G +G +++KL +M + D TF +L+AC+ ++ G
Sbjct: 364 PERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGA 423
Query: 326 ELFSRMEKDF 335
++ +EK F
Sbjct: 424 QIHQLVEKSF 433
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 107 VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166
V N ++ R G+ +AR +FD +PA+ VV+WNSL+ + A E F M V
Sbjct: 36 VMRHNRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPV 95
Query: 167 KNVITWNTMVTGYLRSQLYIEVV---DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223
++ ++WNT++ Y S + LFDEM + D +T ++L A A G ++
Sbjct: 96 RDAVSWNTLLAAYSASPHPDHLAAARRLFDEMP----QRDVVTWNTLLGAYARRGLMDEA 151
Query: 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH 283
R+ D N + ++ + G + ++L+VF KD + M+ G +
Sbjct: 152 RRLF----DEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKN 207
Query: 284 GYGYAALKLLGEM-----NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G + A +LL + D V A + L+ A AG + LF + K
Sbjct: 208 GMLHEAEELLTKRLSVTDMDKAVDA----YNTLIVAYGQAGRFSDAKRLFDMIPK 258
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 148/408 (36%), Positives = 220/408 (53%), Gaps = 40/408 (9%)
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVVSWNSLILA 147
MDHA L D + KD+ FNIM GYAR + A +F ++ D +++SL+ A
Sbjct: 80 MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKA 139
Query: 148 -----------------------------------YTNAGEMEKAGEMFKKMLVKNVITW 172
Y +M A +F +M ++++
Sbjct: 140 CASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N ++TGY RS E + LF E++A N++P +T+ SV+ +CA LG+L+ G IH Y
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKK 259
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
G TALIDM+AKCGS+ ++ +F +V+D W+AMI+ A HG G A+ +
Sbjct: 260 KGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISM 319
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
EM V+ D+ITF+GLL ACSHAGLV++G F M K +G+T ++HYGCMVDLLG
Sbjct: 320 FEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLG 379
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA LD A ++ + + T + LLSAC H ++E+ RV + + + G+ +
Sbjct: 380 RAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDD-AHGGDYV 438
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ +NLYA G+WE+ N R +M D G+VK G S +EVN H+F +G
Sbjct: 439 ILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 486
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 143/293 (48%), Gaps = 16/293 (5%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D+Y+F LLKA + G+ LH +K G ++Y+ L+ MY ++ A
Sbjct: 125 GLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAA 184
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI------DLMPLKDVTSFNIMISGYA 118
VF++M + I+++N+++ +A Q + A+ L ++ P DVT ++++S A
Sbjct: 185 RGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEP-TDVTMLSVIMSC-A 242
Query: 119 RIGKIHSARYIFDKVPAKDVVSW----NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
+G + ++I + V K + +LI + G + A +F+ M V++ W+
Sbjct: 243 LLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSA 302
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN- 233
M+ + ++ + +F+EMK V+PD +T +L AC++ G +E G R + Y+
Sbjct: 303 MIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQG-RGYFYSMSKT 361
Query: 234 -GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV-FCWNAMILGLALHG 284
G+ ++D+ + G ++++ K ++K W ++ + HG
Sbjct: 362 YGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHG 414
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 112/263 (42%), Gaps = 40/263 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+Q + + + ++ + +L + +G +H K GF +V V TAL+ M+
Sbjct: 222 LQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGS 281
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA +FE M +D AW++M+ AFA+ G A+ + + M + V
Sbjct: 282 LTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRP----------- 330
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-----LVKNVITWNTM 175
D +++ L+ A ++AG +E+ F M + + + M
Sbjct: 331 ----------------DEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCM 374
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI--HVYATDN 233
V R+ E + D+++ +K + ++LSAC+ G++E R+ ++ D+
Sbjct: 375 VDLLGRAGHLDEAYNFVDKLE---IKATPILWRTLLSACSTHGNVEMAKRVIERIFELDD 431
Query: 234 GLASNPHATTALIDMYAKCGSIE 256
+ L ++YA+ G E
Sbjct: 432 AHGGD---YVILSNLYARVGRWE 451
>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
Length = 769
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 228/431 (52%), Gaps = 17/431 (3%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMP--------------EKDIIAWNSMLDAFASCGQMDH 94
L+ YG DA ++F+ +P E+++++WNSM+ + G +
Sbjct: 46 NTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCS 105
Query: 95 AMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEM 154
A L + MP KD+ S+N MISGY + + + +F ++P D VSWN +I + GE
Sbjct: 106 ARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEA 165
Query: 155 EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
E A F +M + I+WNTM++GY ++ YI V LF +M PD T +SVL+AC
Sbjct: 166 EHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAAC 225
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDVFCW 273
A++ L GA+IH + + + ALI MY++CG++ + +F + KD+ W
Sbjct: 226 ASIPMLGLGAQIH-QLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSW 284
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
NA+I HG AL+L EM + V ITF+ LLSAC +AGLV EG +F M
Sbjct: 285 NALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVH 344
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD 393
++G+ ++EHY +V+L+GR LD A+E+I +MP P S+ GA L AC ++ +
Sbjct: 345 EYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQ 404
Query: 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGS 453
AK + N S ++ NL+A G+W A R M GI K G S I++ G
Sbjct: 405 MAAKELST-INPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGK 463
Query: 454 YHKFLAGGIGH 464
H F++G H
Sbjct: 464 MHVFISGDTWH 474
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 27/253 (10%)
Query: 102 MPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEK 156
MP KD S + M+SG+ + G +H A + K + K V ++N+LI+AY AG
Sbjct: 1 MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSD 60
Query: 157 AGEMF--------------KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
A +F +K +NV++WN+M+ Y+++ LF+EM
Sbjct: 61 AKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMP----DK 116
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
D ++ +++S ++ ++ D S +I + + G E + F
Sbjct: 117 DLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVS----WNLIIQGFMQKGEAEHARGFF 172
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ + WN MI G +G +++KL +M + D TF +L+AC+ ++
Sbjct: 173 DRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLG 232
Query: 323 EGCELFSRMEKDF 335
G ++ +EK F
Sbjct: 233 LGAQIHQLVEKSF 245
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/473 (31%), Positives = 248/473 (52%), Gaps = 11/473 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G A +F +L A +G LHGQ ++ GF +V+T+L+ +Y
Sbjct: 251 MRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGK 310
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMIS 115
ID AF++FE+ +KD++ W +M+ G D A+ + M LK + +I+
Sbjct: 311 IDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQM-LKFGVKPSTATMASVIT 369
Query: 116 GYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
A++G + YI + DV + NSL+ Y G ++++ +F M +++++
Sbjct: 370 ACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVS 429
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN MVTGY ++ E + LF+EM++ N PD +T+ S+L CA+ G L G IH +
Sbjct: 430 WNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVI 489
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
NGL T+L+DMY KCG ++ + F + D+ W+A+I+G HG G AAL+
Sbjct: 490 RNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALR 549
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+ +S +K + + F+ +LS+CSH GLV++G ++ M KDFG+ LEH+ C+VDLL
Sbjct: 550 FYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLL 609
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
RA ++ A + + +P +LG +L AC + + E+GD +A + + G
Sbjct: 610 SRAGRVEEAYNVYKKKFPDPVLDVLGIILDACRANGNNELGDTIANDILMLRP-MDAGNF 668
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ A+ YAS +WEE M G+ K G S I+++G+ F H
Sbjct: 669 VQLAHCYASINKWEEVGEAWTYMRSLGLKKIPGWSFIDIHGTITTFFTDHNSH 721
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 125/498 (25%), Positives = 215/498 (43%), Gaps = 51/498 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V +D Y+FP LLKA L+ +GL LH + + +G Y+ ++L+ Y
Sbjct: 52 MLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINFYAKFGF 111
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI------ 114
D A KVF+ MPE++++ W +++ ++ G++ A L D M + + ++ +
Sbjct: 112 ADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFG 171
Query: 115 -SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
S A + +H ++ + D+ NS++ Y G +E + ++F M +++++WN
Sbjct: 172 VSELAHVQCLHGCAILYGFM--SDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWN 229
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
++++ Y + EV+ L M+ + T SVLS A+ G L+ G +H
Sbjct: 230 SLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRA 289
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
G + H T+LI +Y K G I+ + +F +S KDV W AMI GL +G AL +
Sbjct: 290 GFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVF 349
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS---RMEKDFGVTRK---------- 340
+M VK T +++AC+ G G + R E V +
Sbjct: 350 RQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKC 409
Query: 341 --LEHYGCMVDLLGRARLLD---------------RAIELIEAMPFE---PTESILGALL 380
L+ + D++ R L+ A+ L M + P + +LL
Sbjct: 410 GHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLL 469
Query: 381 SACVIHQDLEIGDRVAKMVCA---KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437
C L +G + V + L D L+ ++Y CG + A R N M
Sbjct: 470 QGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLV---DMYCKCGDLDTAQRCFNQMPSH 526
Query: 438 GIVKTAGSSVIEVNGSYH 455
+V S I V YH
Sbjct: 527 DLVSW---SAIIVGYGYH 541
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 118/304 (38%), Gaps = 31/304 (10%)
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
+V+ + M +V D T S+L AC+ L G +H +GL+ + + ++LI
Sbjct: 44 QVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLI 103
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
+ YAK G + + +VF ++V W +I + G A L EM ++ +
Sbjct: 104 NFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSV 163
Query: 307 TFIGLLSACSHAGLVQ--EGCELFSRMEKDFGV----------------TRKLEHYGCMV 348
T + LL S VQ GC + D + +RKL Y
Sbjct: 164 TVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHR 223
Query: 349 DLLGRARLLD---------RAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVA 396
DL+ L+ + L++ M FE G++LS +L++G +
Sbjct: 224 DLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLH 283
Query: 397 KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK-TAGSSVIEVNGSYH 455
+ YL +Y G+ + A R +D +V TA S + NGS
Sbjct: 284 GQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSAD 343
Query: 456 KFLA 459
K LA
Sbjct: 344 KALA 347
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/472 (33%), Positives = 253/472 (53%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ +G + ++++F +LKA L + +G +HG +KT + +YV LL +Y
Sbjct: 133 MRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGD 192
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
+D +VFE+MP+ D+I W+ M+ +A Q A++L M L + +F ++
Sbjct: 193 ANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQS 252
Query: 117 YARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A I + + + V +V N+L+ Y G ++ + ++F ++ +N +TW
Sbjct: 253 CASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTW 312
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
NTM+ GY++S + + L+ M V+ +T +SVL ACA+L ++E G +IH +
Sbjct: 313 NTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLK 372
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ ALIDMYAKCGSI+ + VF +D WNAMI G ++HG ALK
Sbjct: 373 TIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKA 432
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M ++ + +TF+ +LSACS+AGL+ G F M +D+G+ +EHY CMV LLG
Sbjct: 433 FQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLG 492
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
R+ LD+A++LIE +P EP + ALL ACVIH D+++G A+ + + + + +
Sbjct: 493 RSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQI-LQIDPQDEATHV 551
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N+YA +W R M + G+ K G S IE G H F G H
Sbjct: 552 LLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSH 603
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 163/335 (48%), Gaps = 12/335 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G + + F +LK + + + LH K G + +V TAL+ Y ++ A
Sbjct: 36 GHELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSA 95
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR----- 119
+ F+ + KD+++W M+ +A + +++L M + + +G +
Sbjct: 96 RQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGL 155
Query: 120 ----IGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT 174
+GK +H + D+ L+ YT G+ +F++M +VI W+
Sbjct: 156 EAFSVGKSVHGC--VLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSF 213
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
M++ Y +S E V+LF +M+ V P+ T SVL +CA++ +L+ G ++H + G
Sbjct: 214 MISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVG 273
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L N + AL+D+YAKCG ++ S+++F + ++ WN MI+G G G AL L
Sbjct: 274 LDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYK 333
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
M + V+A ++T+ +L AC+ ++ G ++ S
Sbjct: 334 NMLECQVQASEVTYSSVLRACASLAAMELGTQIHS 368
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 134/308 (43%), Gaps = 13/308 (4%)
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLI--------DLMPLKDVTSFNIMIS-GYARIG 121
MP+++ +++ +++ + Q+D + L +L P T +++S A +
Sbjct: 1 MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60
Query: 122 -KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+H+ Y + +LI AY G + A + F + K++++W MV Y
Sbjct: 61 YSLHACIYKLGH--ESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYA 118
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + + + LF EM+ P++ T VL AC L + G +H + +
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
L+D+Y K G L VF + DV W+ MI A A++L G+M +
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
V + TF +L +C+ +Q G ++ + K G+ + ++D+ + LD +
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLK-VGLDGNVFVSNALMDVYAKCGRLDNS 297
Query: 361 IELIEAMP 368
++L +P
Sbjct: 298 MKLFMELP 305
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 162/484 (33%), Positives = 266/484 (54%), Gaps = 24/484 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++L ++ SFP +KA L G H Q G+ ++V +AL+ MY +
Sbjct: 67 MRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQM----------------DHAMKLIDLMPL 104
++DA KVF+++P+++I++W SM+ + G D A +D M +
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGM 186
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE--MEKAGEMFK 162
V S ++ IHS ++ + + V N+L+ AY GE + A ++F
Sbjct: 187 VSVISACSRVAAKGLTESIHS--FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFD 244
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLE 221
+++ K+ +++N++++ Y +S + E D+F + K V + +T+++VL A ++ G+L
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALR 304
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G IH GL + T++IDMY KCG +E + F + + K+V W AMI G
Sbjct: 305 IGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYG 364
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+HG+ AL+L M DS V+ + ITF+ +L+ACSHAGL G F+ M+ FGV L
Sbjct: 365 MHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGL 424
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVC 400
EHYGCMVDLLGRA L +A +LI+ M EP I +LL+AC IH+++E+ + VA++
Sbjct: 425 EHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLF- 483
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ + + G M+ +++YA G+W++ R R M + G+VK G S++E+NG H FL G
Sbjct: 484 -ELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIG 542
Query: 461 GIGH 464
H
Sbjct: 543 DEEH 546
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 97/194 (50%), Gaps = 8/194 (4%)
Query: 132 KVPAKDVVSWN-SLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVV 189
KVP+K + + S +L E + +F + + K +V +WN+++ RS E +
Sbjct: 2 KVPSKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEAL 61
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
F M+ ++ P + + AC++L + +G + H A G S+ ++ALI MY
Sbjct: 62 RAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMY 121
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM------NDSCVKA 303
+ CG +E + +VF + +++ W +MI G L+G A+ L ++ +D+ +
Sbjct: 122 STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFL 181
Query: 304 DDITFIGLLSACSH 317
D + + ++SACS
Sbjct: 182 DSMGMVSVISACSR 195
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 127/278 (45%), Gaps = 22/278 (7%)
Query: 67 VFEKMPEK-DIIAWNSMLDAFASCGQMDHA------MKLIDLMPLKDVTSFNIMISGYAR 119
+F + +K D+ +WNS++ A G A M+ + L P + +SF I +
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTR--SSFPCAIKACSS 88
Query: 120 IGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ I S + + D+ ++LI+ Y+ G++E A ++F ++ +N+++W +M
Sbjct: 89 LLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148
Query: 176 VTGYLRSQLYIEVVDLFDEM------KAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+ GY + ++ V LF ++ + D + + SV+SAC+ + + IH +
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSF 208
Query: 230 ATDNGLASNPHATTALIDMYAKCGS--IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
G L+D YAK G + + ++F + KD +N+++ A G
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268
Query: 288 AALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEG 324
A + + + V + IT +L A SH+G ++ G
Sbjct: 269 EAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIG 306
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 250/448 (55%), Gaps = 17/448 (3%)
Query: 32 LHGQTIKTGFCGHVYVQTALL----KMYGSLRCIDDAFKVFEKMPEK-DIIAWNSMLDAF 86
LH +K+G H + T LL K + + A +VF+++P D++ +N++L +
Sbjct: 38 LHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYARQVFDRIPTPGDVVWYNTLLRGY 97
Query: 87 A--SCGQMDHAMKLIDLMP---LKDVTSFNIMISG--YARIGKI-HSARYIFDKVPAKD- 137
A S G + A L ++ D +F ++ AR G+ A + K A D
Sbjct: 98 ARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADH 157
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKN-VITWNTMVTGYLRSQLYIEVVDLFDEMK 196
+LI Y G+ A MF ++ + V+++N M+T +RS E + LF EM+
Sbjct: 158 EYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQ 217
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
A +KP +TVTSVLSACA LG+LE G IH Y GL S TALIDMY KCGS+E
Sbjct: 218 AKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLE 277
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+++VF + +D W+ MI+ A H YG A+ L EM ++ D +TF+G+L ACS
Sbjct: 278 DAIDVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACS 337
Query: 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
H+G+V EG + F M +++G+ ++HYGC+ DLL R+ L++A + I+ +P +PT +
Sbjct: 338 HSGMVSEGLQYFDSM-REYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPTAILW 396
Query: 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436
LLSAC H +++G RV + + + + ++F+NL A+ G+WEE NR R +MN+
Sbjct: 397 RTLLSACGSHGAVDLGKRVFERILELDD-THGSDYVIFSNLCANTGKWEEMNRVRKLMNE 455
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+VK G S IE++ H+F AG H
Sbjct: 456 KGVVKVPGCSSIEIDNRVHEFFAGDGRH 483
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 151/336 (44%), Gaps = 17/336 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E GV D Y+F LLKA + G HG +KTG H YV L+ MY
Sbjct: 114 MLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGD 173
Query: 61 IDDAFKVFEKMPEKD-IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI----S 115
A +F ++P D ++++N+M+ A + A+ L M K + ++ + S
Sbjct: 174 ARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLS 233
Query: 116 GYARIGKIHSARYIFD---KVPAKDVVSWNS-LILAYTNAGEMEKAGEMFKKMLVKNVIT 171
A +G + R+I + K +V N+ LI Y G +E A ++F+ M ++
Sbjct: 234 ACALLGALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQA 293
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W+ M+ Y E + LF+EMK ++PD +T VL AC++ G + G +
Sbjct: 294 WSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSMR 353
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV-FCWNAMILGLALHG---YGY 287
+ G+ + D+ A+ G +E++ + + ++ W ++ HG G
Sbjct: 354 EYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPTAILWRTLLSACGSHGAVDLGK 413
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+ + E++D+ +D + F L C++ G +E
Sbjct: 414 RVFERILELDDTH-GSDYVIFSNL---CANTGKWEE 445
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 116/263 (44%), Gaps = 24/263 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ + + +L A +L + +G +H K G V V TAL+ MYG
Sbjct: 216 MQAKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGS 275
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
++DA VF+ M +D AW+ M+ A+A+ A+ L + M + D +F ++
Sbjct: 276 LEDAIDVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYA 335
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVIT 171
+ G + FD + +V + + +G++EKA + ++ ++ I
Sbjct: 336 CSHSGMVSEGLQYFDSMREYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPTAIL 395
Query: 172 WNTMVTGY-------LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
W T+++ L +++ +++L D + DY+ +++ CAN G E
Sbjct: 396 WRTLLSACGSHGAVDLGKRVFERILELDDTHGS-----DYVIFSNL---CANTGKWEEMN 447
Query: 225 RIHVYATDNGLASNPHATTALID 247
R+ + G+ P ++ ID
Sbjct: 448 RVRKLMNEKGVVKVPGCSSIEID 470
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 104/258 (40%), Gaps = 45/258 (17%)
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL----EVFYKSQ 266
L C +L +L A++H A +GL ++P T L+ + K G+ L +VF +
Sbjct: 26 LPHCTSLRAL---AQLHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYARQVFDRIP 82
Query: 267 VK-DVFCWNAMILGLALHGYGYA-ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
DV +N ++ G A G A A ++L M + V D TF+ LL AC+ A +EG
Sbjct: 83 TPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEG 142
Query: 325 CELFS------------------RMEKDFGVTRKLE-------------HYGCMVDLLGR 353
+ M + G R Y M+ R
Sbjct: 143 RQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVR 202
Query: 354 ARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
+ A+ L M +PT + ++LSAC + LE+G + + V K+ S +
Sbjct: 203 SSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWIHEYV-RKAGLDSLVK 261
Query: 411 L-MMFANLYASCGQWEEA 427
+ ++Y CG E+A
Sbjct: 262 VNTALIDMYGKCGSLEDA 279
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 250/464 (53%), Gaps = 15/464 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ G+ D +L G ++ G H I+ F V + +L+ MYG
Sbjct: 313 MEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFEL 372
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD-------VTSFNIM 113
+D A VF + ++D +W+ M+ + G ++L M +D +TS
Sbjct: 373 VDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSA 432
Query: 114 ISGYARIGKIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFK-KMLVKN 168
IS +R+G++ + Y + ++ ++ NSLI Y G E A ++F L ++
Sbjct: 433 ISSCSRLGRLRLGQSVHCYSIKCLLDENSIT-NSLIGMYGRCGNFELACKIFAVAKLRRD 491
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V+TWN +++ Y + + L+ +M +VKP+ T+ +V+SACANL +LE G +H
Sbjct: 492 VVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHS 551
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
Y + GL S+ +TAL+DMY KCG + + +F +DV WN MI G +HG
Sbjct: 552 YVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQ 611
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348
ALKL EM +K + +TF+ +LSAC HAGLV EG +LF RM + + L+HY CMV
Sbjct: 612 ALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLFIRM-GGYRLEPNLKHYACMV 670
Query: 349 DLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
DLLG++ LL A +L+ AMP +P + G LLSAC +H + E+G RVAK + S+ +D
Sbjct: 671 DLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFS-SDPRND 729
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNG 452
G ++ +N Y S +W+E + R+ M + G+ K G S ++V G
Sbjct: 730 GYYILMSNSYGSAEKWDEIEKLRDTMKNYGVEKGVGWSAVDVWG 773
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 143/317 (45%), Gaps = 22/317 (6%)
Query: 28 IGLMLHGQTIKTGFC---GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLD 84
+G +H ++K G G V V ++L+ MY + DA K+F++M E+D++AW +++
Sbjct: 131 VGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVS 190
Query: 85 AFASCGQMDHAM-KLIDLMPLKDVT----SFNIMISGYARIGKIH--SARYIFDKVPAKD 137
G+ + L+ ++ L + + M SG G + SA K+
Sbjct: 191 GCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKE 250
Query: 138 VVSWNSLILA-----YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLF 192
+ +L+++ Y+ E A +F ++ K+V++W ++ Y R L E V+LF
Sbjct: 251 GIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELF 310
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
EM+ ++PD + V+ VLS + ++ G H + +LI MY K
Sbjct: 311 QEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKF 370
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD----DIT- 307
++ + VF +D W+ M+ G G L+L +M C D DIT
Sbjct: 371 ELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQ--CRDHDEFLCDITS 428
Query: 308 FIGLLSACSHAGLVQEG 324
+ +S+CS G ++ G
Sbjct: 429 LVSAISSCSRLGRLRLG 445
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 141/347 (40%), Gaps = 18/347 (5%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L LH +G L+ Y S A F P D WNS+L +
Sbjct: 32 LRLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCA 91
Query: 90 GQMDHA------MKLIDLMPLK---DVTSFNIMISGYARIG-KIHSARYIFDKVPAKDVV 139
D A M+ P + + + +G +HS F + V
Sbjct: 92 SDFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSV 151
Query: 140 S-WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS----QLYIEVVDLFDE 194
+ +SL+ Y G + A ++F +M+ ++V+ W +V+G +R+ + +V +
Sbjct: 152 AVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRL 211
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
+P+ T+ S L AC LG L G +H YA G+ +AL MY+KC
Sbjct: 212 AGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDM 271
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
E + +F + KDV W +I G A++L EM S ++ D++ +LS
Sbjct: 272 TEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSG 331
Query: 315 CSHAGLVQEGCELFSR-MEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ V G + + ++FG + + + ++ + G+ L+D A
Sbjct: 332 LGSSANVNRGKAFHAVIIRRNFGDSVLIAN--SLISMYGKFELVDVA 376
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 125/352 (35%), Positives = 213/352 (60%), Gaps = 1/352 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+I Y++ ++ AR +F + K+ VSWN+++ + GE+E A ++F +M ++ I+W
Sbjct: 136 LIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISW 195
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
++ G L+ + ++ F +M+ V DY+++ +VL+ACA+LG+L G +H +
Sbjct: 196 TALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMP 255
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
N + +LIDMY++CG IE + +VF K + + WN++I+G A++G+ +L+
Sbjct: 256 QEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEF 315
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M K D +++ G L+ACSHAGLV +G ELF M+ +T ++EHYGC+VDL G
Sbjct: 316 FXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYG 375
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA L+ A+ +IE MP +P E +LG+LL+AC H D+ + +R+ K + K + D +
Sbjct: 376 RAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLF-KLDPEGDAYYV 434
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ +N+YA+ G+W+ AN R M G+ K G S +E++G H+F+AG H
Sbjct: 435 LLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFVAGDNYH 486
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 156/346 (45%), Gaps = 64/346 (18%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLM--LHGQTIKTGF-CGHVYVQTALLKMYGS 57
M+ GV ++ +F LL A S LHG K G GHV V TAL+ MY
Sbjct: 83 MRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSK 142
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY 117
+ A KVF + K+ ++WN+ML+ F G+++ A++L D MP +D S+ +I+G
Sbjct: 143 CAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGL 202
Query: 118 ARIGKIHSARYIFDKVP----AKDVVS------------------W-------------- 141
+ G A F ++ A D VS W
Sbjct: 203 LKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNI 262
Query: 142 ---NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
NSLI Y+ G +E A ++F KM + +++WN+++ G+ + E ++ F M+
Sbjct: 263 KISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKE 322
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA-------LIDMYAK 251
KPD ++ T L+AC++ G + G + DN + H T ++D+Y +
Sbjct: 323 GFKPDGVSYTGALTACSHAGLVNKGLELF----DN--MKSVHKITPRIEHYGCIVDLYGR 376
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
G +E +L + + +K N ++LG L AA + G++N
Sbjct: 377 AGRLEDALNMIEEMPMKP----NEVVLGSLL-----AACRTHGDVN 413
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 37/242 (15%)
Query: 161 FKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG-- 218
F V ++ W + + Y R+ E F M+ V+P+++T ++LSACA+
Sbjct: 49 FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108
Query: 219 SLETGARIHVYATDNGLAS-NPHATTALIDMYAKC------------------------- 252
S + +H YA GL + + TALIDMY+KC
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168
Query: 253 ------GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
G IE ++++F + +D W A+I GL HGY AL+ +M S V AD +
Sbjct: 169 NGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYV 228
Query: 307 TFIGLLSACSHAGLVQEGCELFS-RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365
+ I +L+AC+ G + G + M ++F K+ + ++D+ R ++ A ++
Sbjct: 229 SIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISN--SLIDMYSRCGCIEFARQVFV 286
Query: 366 AM 367
M
Sbjct: 287 KM 288
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 241/484 (49%), Gaps = 52/484 (10%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H Q I GF ++ LL Y + + +A KVFE++ WN M+ S +
Sbjct: 37 IHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGH-SQSE 95
Query: 92 MDHAM-----KLIDLMPLKDVTSFNIMISGYAR--------------------------- 119
H + ++++ + +++ +I G AR
Sbjct: 96 TPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRT 155
Query: 120 -----------IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+ AR +FD++ +++VSWNSL+ Y G+++ A +F +M +N
Sbjct: 156 SLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERN 215
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V++W TM+ G + + + LF EM+ VK D + + + LSACA LG L+ G IH
Sbjct: 216 VVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHS 275
Query: 229 YATDNGLASNP----HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
Y + A N +LI MYA CG I+++ +VF Q + W +MI G A G
Sbjct: 276 YIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG 335
Query: 285 YGYAALKLLGEMNDSCV---KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+ AL + M + D ITFIG+L ACSHAG V +G F M K +G+ ++
Sbjct: 336 HAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRI 395
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA-KMVC 400
EHYGCMVDLL RA LD A LIE+MP +P +++ GALL C IH++ E+ VA K+
Sbjct: 396 EHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLAL 455
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ G L++ +N+YA+ +W++ R M + G+ K AG S +++NG H F+AG
Sbjct: 456 ELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVAG 515
Query: 461 GIGH 464
H
Sbjct: 516 DWTH 519
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 149/308 (48%), Gaps = 55/308 (17%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMY---GSLRCIDDAFKVFEKMPEKDIIAWNSMLDA 85
G +HG+ + G+C +V+V+T+L+ +Y G + A +VF+++ +++I++WNS+L
Sbjct: 135 GEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAG 194
Query: 86 FASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV------ 139
+ CG +D A ++ D MP ++V S+ MI+G A+IG+ A ++F ++ V
Sbjct: 195 YVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVAL 254
Query: 140 ----------------SW---------------------NSLILAYTNAGEMEKAGEMFK 162
+W NSLI Y + G ++KA ++F
Sbjct: 255 VAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFI 314
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK---AGNVKPDYLTVTSVLSACANLGS 219
M ++ I+W +M+TG+ + E + +F M+ +PD +T VL AC++ G
Sbjct: 315 GMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGF 374
Query: 220 LETGARIHVYATDN---GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWNA 275
++ G H + N G+ ++D+ ++ G ++++ + +K + W A
Sbjct: 375 VDQGR--HFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGA 432
Query: 276 MILGLALH 283
++ G +H
Sbjct: 433 LLGGCRIH 440
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 22/236 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH----VYVQTALLKMYG 56
M+ GV D + L A L +G +H + G+ V + +L+ MY
Sbjct: 242 MRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYA 301
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-------LKDVTS 109
S ID A+KVF M ++ I+W SM+ FA G + A+ + M D +
Sbjct: 302 SCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGIT 361
Query: 110 FNIMISGYARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKM 164
F ++ + G + R+ F+ + K + + ++ + AG +++A + + M
Sbjct: 362 FIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESM 421
Query: 165 LVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD----YLTVTSVLSACA 215
+K N W ++ G R E+ + A +KPD YL + S + A A
Sbjct: 422 PMKPNDAVWGALLGG-CRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATA 476
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
S+L C + L+ +IH NG + L+ Y G++ + +VF + +
Sbjct: 23 SLLQTCDTIKKLK---QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENP 79
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
WN MI G + + ++L M ++ + ++ T+ L+ C+ + L++EG ++
Sbjct: 80 STTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVH 139
Query: 329 SRM 331
R+
Sbjct: 140 GRV 142
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 255/461 (55%), Gaps = 16/461 (3%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L L +++H IK G ++V AL+ MY ++DA K F++M D
Sbjct: 322 ILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITD 381
Query: 76 IIAWNSMLDAFASCGQMDHA------MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
+++WNS++ A+ A M+L P D+ + + S A+ ++R +
Sbjct: 382 VVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQP--DLLTLVSLASIVAQSRDCKNSRSV 439
Query: 130 FDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
+ + DVV N+++ Y G ++ A ++F+ + VK+VI+WNT++TGY ++ L
Sbjct: 440 HGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGL 499
Query: 185 YIEVVDLFDEMK-AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E ++++ M+ + P+ T S+L A A++G+L+ G +IH L + T
Sbjct: 500 ASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVAT 559
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
LID+Y KCG + ++ +FY+ + WNA+I +HG+ LKL GEM D VK
Sbjct: 560 CLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKP 619
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
D +TF+ LLSACSH+G V+EG F R+ +++G+ L+HYGCMVDLLGRA L+ A +
Sbjct: 620 DHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDF 678
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I+ MP +P SI GALL AC IH ++E+G + A + + + G ++ +N+YA+ G+
Sbjct: 679 IKDMPLQPDASIWGALLGACRIHGNIELG-KFASDRLFEVDSKNVGYYVLLSNIYANVGK 737
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
WE ++ R++ + G+ KT G S IEVN F G H
Sbjct: 738 WEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSH 778
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 218/450 (48%), Gaps = 27/450 (6%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D Y+FP +LKA G L G +H K GF +V+V +L+ MY A
Sbjct: 214 IRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 270
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT-SFNIMISGY---ARIG 121
+F+ MP +D+ +WN+M+ G A+ ++D M L+ + +F ++S ++G
Sbjct: 271 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330
Query: 122 KIHSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177
I +A Y+ D+ N+LI Y G +E A + F++M + +V++WN+++
Sbjct: 331 DISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIA 390
Query: 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LA 236
Y ++ + F +M+ +PD LT+ S+ S A + +H + G L
Sbjct: 391 AYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLM 450
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ A++DMYAK G ++ + +VF VKDV WN +I G A +G A+++ +M
Sbjct: 451 EDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY-KM 509
Query: 297 NDSC--VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY--GCMVDLLG 352
+ C + + T++ +L A +H G +Q+G ++ R+ K L+ + C++D+ G
Sbjct: 510 MEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIK---TNLHLDVFVATCLIDVYG 566
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
+ L A+ L +P E + + A++S IH E + K+ + + +
Sbjct: 567 KCGRLVDAMSLFYQVPQESSVT-WNAIISCHGIHGHAE---KTLKLFGEMLDEGVKPDHV 622
Query: 413 MFANLYASCGQ--WEEANRW-RNMMNDTGI 439
F +L ++C + E +W +M + GI
Sbjct: 623 TFVSLLSACSHSGFVEEGKWCFRLMQEYGI 652
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 168/350 (48%), Gaps = 20/350 (5%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH + G +++ T L+ +Y +L + + F+++P+KD+ AWNSM+ A+ G
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197
Query: 92 MDHAM----KLIDLMPLK-DVTSFNIMISGYARI---GKIHSARYIFDKVPAKDVVSWN- 142
A+ +L+ + ++ D +F ++ + KIH + K WN
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAF-------KLGFQWNV 250
Query: 143 ----SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
SLI Y+ G A +F M +++ +WN M++G +++ + +D+ DEM+
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+K +++TV S+L C LG + T IH+Y +GL + + ALI+MYAK G++E +
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+ F + + DV WN++I + A +M + + D +T + L S + +
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+ + + + + + +VD+ + LLD A ++ E +P
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIP 480
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 267/501 (53%), Gaps = 43/501 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ G+ D + FP LL+A+ + + LH I+ GF +Y AL+ MY
Sbjct: 67 LRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHP 126
Query: 61 ----------------------IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL 98
ID K+F++MP +D+++WN+++ A G + A+ +
Sbjct: 127 HLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNM 186
Query: 99 IDLMPLKDVT--SFNI-----MISGYARIGK---IH--SARYIFDKVPAKDVVSWNSLIL 146
+ M +++ SF + + + +A + K IH + R+ FDK DV +SLI
Sbjct: 187 VKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDK----DVFIGSSLID 242
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y ++E + F + ++ I+WN+++ G +++ + + + F M VKP ++
Sbjct: 243 MYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVS 302
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+SV+ ACA+L +L G ++H Y G N ++L+DMYAKCG+I+ + +F K +
Sbjct: 303 FSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIE 362
Query: 267 V--KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ +D+ W A+I+G A+HG+ A+ L EM VK + F+ +L+ACSHAGLV EG
Sbjct: 363 MCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEG 422
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
+ F+ M++DFGV LEHY + DLLGRA L+ A + I M EPT S+ LL+AC
Sbjct: 423 WKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACR 482
Query: 385 IHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
H+++E+ ++V K++ + G ++ +N+Y++ +W +A + R M TG+ KT
Sbjct: 483 AHKNIELAEKVVNKILLVDPGNM--GAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTP 540
Query: 444 GSSVIEVNGSYHKFLAGGIGH 464
S IEV H FLAG H
Sbjct: 541 ACSWIEVGNKVHTFLAGDKSH 561
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 22/180 (12%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+ W ++ Y L + F+ +++ + PD S+L A +H
Sbjct: 42 LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101
Query: 230 ATDNGLASNPHATTALIDMYAKCGS----------------------IEQSLEVFYKSQV 267
G + + AL++MY+K I+ ++F + V
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
+DV WN +I G A +G AL ++ EM ++ D T +L + V +G E+
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEI 221
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 214/370 (57%), Gaps = 32/370 (8%)
Query: 95 AMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEM 154
A++L D MP++ V ++N M+SG R G + +A +FD +P D VSW +LI + G
Sbjct: 126 ALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRH 185
Query: 155 EKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214
++A + F+ ML+ +V+PDY+T+ +V+SAC
Sbjct: 186 DEAIDCFRAMLLD-------------------------------SVEPDYVTLIAVVSAC 214
Query: 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWN 274
A +G+L G +H GL N +LIDMYA+CG ++ + +VF+ + + V WN
Sbjct: 215 AEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWN 274
Query: 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+MI+GLA +G A++L EM K D +T G+L+ACSHAGL + G + M +
Sbjct: 275 SMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTE 334
Query: 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394
+G+ ++EHYGC+VDLLGRA LD A+ ++E MP P E +LGALL+ C +H DL++ ++
Sbjct: 335 YGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGDLDMAEQ 394
Query: 395 VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSY 454
+ + + + + D ++ +N+YA+ G+W+ A + R++M G+ K G S++E++G
Sbjct: 395 LMQHLF-ELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSIVEIDGDV 453
Query: 455 HKFLAGGIGH 464
H+F++ H
Sbjct: 454 HEFVSSDRSH 463
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 148/318 (46%), Gaps = 51/318 (16%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
AD+ S PL + + L LH + +K F H+ + T L + Y + R A ++
Sbjct: 80 ADSPSSPL---------ARPLALTLHARALKL-FPSHLLLSTCLARFYLASRLPHLALQL 129
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA- 126
F+ MP + ++ +N+M+ G +D A ++ D MP D S+ +I G+ + G+ A
Sbjct: 130 FDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAI 189
Query: 127 --------------------------------------RYIFDKVPAKDVVSWNSLILAY 148
R + + ++V NSLI Y
Sbjct: 190 DCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMY 249
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G+++ A ++F + + V++WN+M+ G + L E ++LF+EM+ KPD +T+T
Sbjct: 250 ARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLT 309
Query: 209 SVLSACANLGSLETGARIH-VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
VL+AC++ G E G R + + T+ G+A+ ++D+ + G +++++ V +
Sbjct: 310 GVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPM 369
Query: 268 K-DVFCWNAMILGLALHG 284
+ + A++ G +HG
Sbjct: 370 RPNEVVLGALLAGCRMHG 387
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 248/480 (51%), Gaps = 66/480 (13%)
Query: 50 ALLKMYGSLRCIDDAFKVFEKMPEKDI----IAWNSMLDAFASCGQMDHAMKLIDLMPLK 105
++L++ L+ I D ++ + D+ + + ++ + +CG + ++ D + +
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165
Query: 106 DVTSFNIMISGYARIG------------------KIHSARYIFDKVPAKDVVSWNSLILA 147
V +N++++GYA+IG ++ SAR +FD++ +DV+SWNS+I
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISG 225
Query: 148 YTNAGEMEKAGEMFKKMLV----------------------------------------- 166
Y + G EK ++F++ML+
Sbjct: 226 YVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETM 285
Query: 167 --KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224
++V++W +M+ GY R L V LF EM+ ++ P+ +T+ +L ACA+L +LE G
Sbjct: 286 GERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQ 345
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
IH + NG + + H AL+DMY KCG++ + +F KD+ W MI G +HG
Sbjct: 346 EIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHG 405
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
YG A+ EM +S ++ D+++FI +L ACSH+GL+ EG F+ M + + K EHY
Sbjct: 406 YGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHY 465
Query: 345 GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404
C+VDLL RA L +A + I+ MP EP +I GALL C I+ D+++ ++VA+ V +
Sbjct: 466 ACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHV-FELE 524
Query: 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ G ++ AN+YA +WEE + R + G+ K G S IE+ G H F+ G H
Sbjct: 525 PENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSH 584
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 140/317 (44%), Gaps = 37/317 (11%)
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV--TSFNIMISGYARIGKIHSARYIFDKV 133
I +N + F G + AM+LI+ P D+ ++ ++ A + I R I +
Sbjct: 68 ITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSII 127
Query: 134 PAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
+ DV V + L+ Y G++ + +F K+ + V WN ++ GY + + E +
Sbjct: 128 QSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESL 187
Query: 190 DLFDEMKAGNVK--------------PDYLTVTSVLSACANLGSLETG----ARIHVYAT 231
LF M+ ++ D ++ S++S + G E G ++ +
Sbjct: 188 SLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGI 247
Query: 232 DNGLASNPHA----TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
+ LA+ L+DMY+K G++ +++VF + V W +MI G A G
Sbjct: 248 NTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSD 307
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEHYGC 346
+++L EM + + IT +L AC+ ++ G E+ + ++ F + R + +
Sbjct: 308 MSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN--A 365
Query: 347 MVDL------LGRARLL 357
+VD+ LG ARLL
Sbjct: 366 LVDMYLKCGALGLARLL 382
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 116/249 (46%), Gaps = 14/249 (5%)
Query: 47 VQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKD 106
+ LL MY ++ A +VFE M E+ +++W SM+ +A G D +++L M +D
Sbjct: 261 LNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKED 320
Query: 107 VTSFNIM----------ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEK 156
+ +I ++ R +IH +I + D N+L+ Y G +
Sbjct: 321 LFPNSITMACILPACASLAALERGQEIHG--HILRNGFSLDRHVANALVDMYLKCGALGL 378
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A +F + K++++W M+ GY E + F+EM+ ++PD ++ S+L AC++
Sbjct: 379 ARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSH 438
Query: 217 LGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DVFCWN 274
G L+ G +N + ++D+ A+ G++ ++ + ++ D W
Sbjct: 439 SGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWG 498
Query: 275 AMILGLALH 283
A++ G ++
Sbjct: 499 ALLCGCRIY 507
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 23/197 (11%)
Query: 194 EMKAGNVKPDY--LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK 251
E+ + KPD T SVL CA+L S++ G RIH N + + + L+ MY
Sbjct: 89 ELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVT 148
Query: 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK--------- 302
CG + + +F K + VF WN ++ G A G +L L M + ++
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLF 208
Query: 303 -----ADDITFIGLLSACSHAGLVQEGCELFSRM-----EKDFG--VTRKLEHYGCMVDL 350
D I++ ++S GL ++G +LF +M D V+ +L C++D+
Sbjct: 209 DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDM 268
Query: 351 LGRARLLDRAIELIEAM 367
++ L+ AI++ E M
Sbjct: 269 YSKSGNLNSAIQVFETM 285
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 39/229 (17%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ + ++ + +L A L++ G +HG ++ GF +V AL+ MY
Sbjct: 316 MEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGA 375
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A +F+ +PEKD+++W M+ + G A + +FN M R
Sbjct: 376 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEA-----------IAAFNEM-----RN 419
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
I D VS+ S++ A +++G +++ F N++ N +
Sbjct: 420 SGIEP-----------DEVSFISILYACSHSGLLDEGWGFF------NMMRNNCCIEP-- 460
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDY--LTVTSVLSACANLGSLETGARIH 227
+S+ Y +VDL +AGN+ Y + + + G+L G RI+
Sbjct: 461 KSEHYACIVDLL--ARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIY 507
>gi|413918046|gb|AFW57978.1| hypothetical protein ZEAMMB73_147394 [Zea mays]
Length = 729
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 248/461 (53%), Gaps = 3/461 (0%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
GV + Y++ +L+A L + G +HG I+ GF + +AL+ +Y + +DDA
Sbjct: 238 GVMPNEYTYDSVLRACVRLGALDFGRSVHGCLIRCGFRSEQLITSALVDLYCTSDALDDA 297
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
V+ + I N+++ S G+ +HA + MP +D S+N+MI YA G++
Sbjct: 298 LLVYNDLDRPSSITSNTLIAGLISIGRTEHAKMVFSQMPEQDSGSYNLMIKAYAMEGELE 357
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML-VKNVITWNTMVTGYLRSQ 183
R IF+K+P +++VS NS++ G +E+ ++FK++ ++ ITWN+M++GY+++
Sbjct: 358 HCRRIFEKMPRRNMVSLNSMMSVLLQNGRLEEGLKLFKQIKDERDTITWNSMISGYIQND 417
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
E + LF M +++ T +++L ACA +G+LE G +H + S+ H T
Sbjct: 418 KPSEALKLFVVMCRLSIECSPSTFSALLHACATIGTLEQGRMVHCHLCKTSFDSSDHVGT 477
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
AL DMY KCG + + F +V W ++I GLA +G+ AL G M VK
Sbjct: 478 ALADMYFKCGCVIDAQSAFTYVTSPNVASWTSLINGLAQNGHWLEALSQFGRMLKHHVKP 537
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
++ITF+GLL A + AGLV +G ++F ME +FG+ ++H C+VDLLGR A +
Sbjct: 538 NEITFLGLLMASARAGLVNKGMKIFYSME-NFGLVPTVQHCTCVVDLLGRTGRTREAEKF 596
Query: 364 IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
I MP I GALL+AC DLE+G++VA+ + + M +N+YA G+
Sbjct: 597 IYEMPLPADGVIWGALLTACWYSMDLEMGEKVAQRLFFMGTKHRSAYVAM-SNIYAKLGK 655
Query: 424 WEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
WE+ + R + K G S IE+ G H FL H
Sbjct: 656 WEDVVKVRTWLRSLNAEKEPGCSWIEIKGIVHVFLVDDQNH 696
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 103/437 (23%), Positives = 171/437 (39%), Gaps = 62/437 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV +F ++ A C G HGQ IK+G G +LL Y S
Sbjct: 98 MHSSGVPFTEATFASVVGACARGRMFCAGTQAHGQVIKSGCEGFAVTGASLLDFYSSCFD 157
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-KDVTSFNIMISGYAR 119
+ +FE + K+ + W+ M+ A G + A+ L+ P +DV ++ +ISGYA+
Sbjct: 158 LRATRTLFESLRPKNELLWSPMVVALVRFGLLAEALDLLQNTPAPRDVFAWTAVISGYAK 217
Query: 120 -----IGKIHSARYIFDKVPAKDVV-----SWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
GK A +F K+ A D V +++S++ A G ++ G L++
Sbjct: 218 GTDQCCGK---ALQLFVKLLADDGVMPNEYTYDSVLRACVRLGALD-FGRSVHGCLIRCG 273
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGN--VKPDYLTVTSVLSACANLGSLETGARI- 226
++T L LY L D + N +P +T ++++ ++G E +
Sbjct: 274 FRSEQLITSAL-VDLYCTSDALDDALLVYNDLDRPSSITSNTLIAGLISIGRTEHAKMVF 332
Query: 227 -HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
+ D+G + +I YA G +E +F K +++ N+M+ L +G
Sbjct: 333 SQMPEQDSG------SYNLMIKAYAMEGELEHCRRIFEKMPRRNMVSLNSMMSVLLQNGR 386
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
LKL ++ D + D IT+ ++S E +LF M +
Sbjct: 387 LEEGLKLFKQIKD---ERDTITWNSMISGYIQNDKPSEALKLFVVMCR------------ 431
Query: 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405
+ E + S ALL AC LE G V +C S
Sbjct: 432 ---------------------LSIECSPSTFSALLHACATIGTLEQGRMVHCHLCKTSFD 470
Query: 406 LSDGELMMFANLYASCG 422
SD A++Y CG
Sbjct: 471 SSDHVGTALADMYFKCG 487
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F ++ I+WN +V+G+ R + +D M + V T SV+ ACA
Sbjct: 63 LFDGTRHRDAISWNAVVSGHARHGNVPDALDTAARMHSSGVPFTEATFASVVGACARGRM 122
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
G + H +G +L+D Y+ C + + +F + K+ W+ M++
Sbjct: 123 FCAGTQAHGQVIKSGCEGFAVTGASLLDFYSSCFDLRATRTLFESLRPKNELLWSPMVVA 182
Query: 280 LALHGYGYAALKLL 293
L G AL LL
Sbjct: 183 LVRFGLLAEALDLL 196
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 35/265 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M L + +F LL A + + G M+H KT F +V TAL MY C
Sbjct: 429 MCRLSIECSPSTFSALLHACATIGTLEQGRMVHCHLCKTSFDSSDHVGTALADMYFKCGC 488
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ DA F + ++ +W S+++ A G L+ ++ F M+ + +
Sbjct: 489 VIDAQSAFTYVTSPNVASWTSLINGLAQNGHW-----------LEALSQFGRMLKHHVKP 537
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM----LVKNVITWNTMV 176
+I ++ L++A AG + K ++F M LV V +V
Sbjct: 538 NEI----------------TFLGLLMASARAGLVNKGMKIFYSMENFGLVPTVQHCTCVV 581
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
R+ E EM + D + ++L+AC LE G ++ G
Sbjct: 582 DLLGRTGRTREAEKFIYEMP---LPADGVIWGALLTACWYSMDLEMGEKVAQRLFFMG-T 637
Query: 237 SNPHATTALIDMYAKCGSIEQSLEV 261
+ A A+ ++YAK G E ++V
Sbjct: 638 KHRSAYVAMSNIYAKLGKWEDVVKV 662
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 36/165 (21%)
Query: 240 HATTALIDMYAKCGSIEQSLE------VFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
H + A+ D A+ + + S +F ++ +D WNA++ G A HG AL
Sbjct: 36 HTSLAVPDRIAQQRATQVSFPRGRTRYLFDGTRHRDAISWNAVVSGHARHGNVPDALDTA 95
Query: 294 GEMNDSCVKADDITFIGLLSAC-----------SHAGLVQEGCELFSRMEK--------- 333
M+ S V + TF ++ AC +H +++ GCE F+
Sbjct: 96 ARMHSSGVPFTEATFASVVGACARGRMFCAGTQAHGQVIKSGCEGFAVTGASLLDFYSSC 155
Query: 334 -DFGVTRKLEH---------YGCMVDLLGRARLLDRAIELIEAMP 368
D TR L + MV L R LL A++L++ P
Sbjct: 156 FDLRATRTLFESLRPKNELLWSPMVVALVRFGLLAEALDLLQNTP 200
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 149/480 (31%), Positives = 255/480 (53%), Gaps = 45/480 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+H D +F LLK+ S +G +H + TG VY++ +L+KMY ++ A
Sbjct: 8 IHPDEQTFLSLLKSVDAERRS-VGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAE 66
Query: 66 KVFEKMPEKDIIAWNSMLDAF--------------------------------ASCGQMD 93
+F P D ++ N ML + A CG++
Sbjct: 67 AMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLK 126
Query: 94 HAM-------KLIDLMPLKD--VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSL 144
A+ ++ + + D + N ++ YA+ G++++A +FD+ +D +SWN++
Sbjct: 127 KAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISWNTM 186
Query: 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204
+ + NAG ++ A + F + +++I+WN ++ GY R + + + LF +M A +V PD
Sbjct: 187 VAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDK 246
Query: 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
+T +++SA A G+L + +H + + +AL+DMY KCGSI+ + VF K
Sbjct: 247 VTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSIKLAYAVFEK 306
Query: 265 SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ KDV W AMI GLA HG+G AL L +M + + +T + +LSACSHAGL EG
Sbjct: 307 AVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSACSHAGLFDEG 366
Query: 325 CELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384
C++F +++ F + +EH+GCMVDLL R+ L A++L MP +P+ SI G++LSA
Sbjct: 367 CKIFDTLKQRFNIEPGVEHFGCMVDLLARSGRLSDAVDLARRMPMKPSRSIWGSILSASS 426
Query: 385 IHQDLEIGDRVAK-MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443
Q+ E+ + +K ++C + +G ++ +N+YA+ GQW +N R M G+ K+A
Sbjct: 427 ACQNTEVAEIASKELLCLEPA--EEGGYVLLSNMYAAEGQWNYSNEVRENMERKGVRKSA 484
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 127/267 (47%), Gaps = 41/267 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKT-GFCGH-VYVQTALLKMYGSL 58
M G+ D Y+ LL G L + +G +HG ++ G + + ALL MY
Sbjct: 103 MASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKC 162
Query: 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
++ A +VF++ E+D I+WN+M+ FA+ G +D A K P +D+ S+N +++GYA
Sbjct: 163 GEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYA 222
Query: 119 RIGKIHSARYIF----------DKVPAKDVVS----------------W----------- 141
R + + +F DKV A ++S W
Sbjct: 223 RYEEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSF 282
Query: 142 --NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
++L+ Y G ++ A +F+K + K+V W M++G +DLF +M+A
Sbjct: 283 LASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEG 342
Query: 200 VKPDYLTVTSVLSACANLGSLETGARI 226
+P+ +T+ +VLSAC++ G + G +I
Sbjct: 343 TEPNGVTLVAVLSACSHAGLFDEGCKI 369
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M A ++ PD T S+L + + G ++H + GL S + +LI MY G
Sbjct: 3 MLASSIHPDEQTFLSLLKS-VDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGD 61
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+E + +F + D N M+ G G AL+ M + D T + LL+
Sbjct: 62 VEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLAC 121
Query: 315 C 315
C
Sbjct: 122 C 122
>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
Length = 690
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 245/476 (51%), Gaps = 22/476 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G + ++ LKA G + G+ +HG ++TGF GH V +L+ MY R
Sbjct: 96 MRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRW 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMIS 115
DA +VF+ +P +++ WNSM+ +A GQ ++ + M + D +F ++
Sbjct: 154 TGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLK 213
Query: 116 -----GYARIG-KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
G AR G ++H+A + PA + + +L+ Y + A ++F + +N
Sbjct: 214 ACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNA 273
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
I W T++ G+ + E + LF + V+ D ++SV++ A+ +E G ++H Y
Sbjct: 274 IQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCY 333
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ +L+DMY KCG ++ F + ++V W AMI G+ HG+G A
Sbjct: 334 TAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREA 393
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
+ L EM + V+AD++ ++ LLSACSH+GLV E FSR+ +D + K EHY CMVD
Sbjct: 394 IDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVD 453
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA L A ELI +MP EPT + LLSAC +H+D+ +G V ++ A DG
Sbjct: 454 LLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLA-----VDG 508
Query: 410 E----LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGG 461
+ +M +N+ A G+W E R M G+ K G S EV+ H F GG
Sbjct: 509 DNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEVHFFYGGG 564
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 155/320 (48%), Gaps = 13/320 (4%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
LL+A+ SS G+ LH +K GF + L+ MY + A +VF+ MPE++
Sbjct: 10 LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERN 69
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMIS-------GYARIG-KIHSAR 127
+++W +++ F G+ ++L M + +S G R G +IH
Sbjct: 70 VVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGVQIHGV- 128
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+ DVV+ NSL++ Y+ A +F + +N+ TWN+M++GY + +
Sbjct: 129 CVRTGFEGHDVVA-NSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRD 187
Query: 188 VVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGL--ASNPHATTA 244
+ +F EM + + +PD T S+L AC+ LG+ GA++H G+ ASN A
Sbjct: 188 SLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGA 247
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+D+Y KC + +++VF + ++ W +I+G A G A+ L S V+AD
Sbjct: 248 LLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRAD 307
Query: 305 DITFIGLLSACSHAGLVQEG 324
+++ + LV++G
Sbjct: 308 GHVLSSVVAVFADFALVEQG 327
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 3/191 (1%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y G++ AGE+F M +NV++W ++ G+L E + LF EM+
Sbjct: 43 NNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTS 102
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P+ T+++ L AC G G +IH G + +L+ MY+K + V
Sbjct: 103 PNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRV 160
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC-VKADDITFIGLLSACSHAGL 320
F +++ WN+MI G A G G +L + EM + D+ TF LL ACS G
Sbjct: 161 FDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGA 220
Query: 321 VQEGCELFSRM 331
+EG ++ + M
Sbjct: 221 AREGAQVHAAM 231
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%)
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
+ +L A A SL G ++H G S+ LIDMYAKCG + + EVF
Sbjct: 7 IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315
++V W A+++G HG L+L GEM S ++ T L AC
Sbjct: 67 ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKAC 115
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,188,519,463
Number of Sequences: 23463169
Number of extensions: 287601094
Number of successful extensions: 806118
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9063
Number of HSP's successfully gapped in prelim test: 2716
Number of HSP's that attempted gapping in prelim test: 631548
Number of HSP's gapped (non-prelim): 53947
length of query: 471
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 325
effective length of database: 8,933,572,693
effective search space: 2903411125225
effective search space used: 2903411125225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)