BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012108
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 134 PAKDVVSWNSLILAYTNAGEMEKAGEMFKKML---VKNVITWNTMVTGYLRSQLYIEVVD 190
P +W +L AY G+ +KA E ++K L N W + Y + Y + ++
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 191 LFD---EMKAGNVKPDY 204
+ E+ N K Y
Sbjct: 65 YYQKALELDPNNAKAWY 81
>pdb|2AJP|A Chain A, Crystal Structure Of A Human Pyridoxal Kinase
pdb|2AJP|B Chain B, Crystal Structure Of A Human Pyridoxal Kinase
Length = 326
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE-VVDLFDEMKAGN 199
W +L N+ E++ E+++ + + N+ ++ ++TGY R + ++ VVD+ E+K N
Sbjct: 66 WKGQVL---NSDELQ---ELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQN 119
Query: 200 VK 201
+
Sbjct: 120 PR 121
>pdb|3FHX|A Chain A, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
pdb|3FHX|B Chain B, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE-VVDLFDEMKAGN 199
W +L N+ E++ E+++ + + N+ ++ ++TGY R + ++ VVD+ E+K N
Sbjct: 52 WKGQVL---NSDELQ---ELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQN 105
Query: 200 VK 201
+
Sbjct: 106 PR 107
>pdb|2F7K|A Chain A, Crystal Structure Of Human Pyridoxal Kinase
pdb|2F7K|B Chain B, Crystal Structure Of Human Pyridoxal Kinase
Length = 327
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE-VVDLFDEMKAGN 199
W +L N+ E++ E+++ + + N+ ++ ++TGY R + ++ VVD+ E+K N
Sbjct: 67 WKGQVL---NSDELQ---ELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQN 120
Query: 200 VK 201
+
Sbjct: 121 PR 122
>pdb|2YXT|A Chain A, Human Pyridoxal Kinase
pdb|2YXT|B Chain B, Human Pyridoxal Kinase
pdb|2YXU|A Chain A, Human Pyridoxal Kinase
pdb|2YXU|B Chain B, Human Pyridoxal Kinase
pdb|3KEU|A Chain A, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|3KEU|B Chain B, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|4EN4|A Chain A, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EN4|B Chain B, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EOH|A Chain A, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
pdb|4EOH|B Chain B, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
Length = 312
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE-VVDLFDEMKAGN 199
W +L N+ E++ E+++ + + N+ ++ ++TGY R + ++ VVD+ E+K N
Sbjct: 52 WKGQVL---NSDELQ---ELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQN 105
Query: 200 VK 201
+
Sbjct: 106 PR 107
>pdb|3FHY|A Chain A, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
pdb|3FHY|B Chain B, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE-VVDLFDEMKAGN 199
W +L N+ E++ E+++ + + N+ ++ ++TGY R + ++ VVD+ E+K N
Sbjct: 52 WKGQVL---NSDELQ---ELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQN 105
Query: 200 VK 201
+
Sbjct: 106 PR 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,407,222
Number of Sequences: 62578
Number of extensions: 521915
Number of successful extensions: 1130
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 6
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)