BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012108
(471 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 359 bits (922), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 182/470 (38%), Positives = 273/470 (58%), Gaps = 9/470 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ ADN+++P LLKA S + M+H K G +YV AL+ Y RC
Sbjct: 108 MQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYS--RC 165
Query: 61 ----IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISG 116
+ DA K+FEKM E+D ++WNSML G++ A +L D MP +D+ S+N M+ G
Sbjct: 166 GGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDG 225
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--KNVITWNT 174
YAR ++ A +F+K+P ++ VSW+++++ Y+ AG+ME A MF KM + KNV+TW
Sbjct: 226 YARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTI 285
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ GY L E L D+M A +K D V S+L+AC G L G RIH +
Sbjct: 286 IIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSN 345
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L SN + AL+DMYAKCG+++++ +VF KD+ WN M+ GL +HG+G A++L
Sbjct: 346 LGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFS 405
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354
M ++ D +TFI +L +C+HAGL+ EG + F MEK + + ++EHYGC+VDLLGR
Sbjct: 406 RMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRV 465
Query: 355 RLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414
L AI++++ MP EP I GALL AC +H +++I V + K + G +
Sbjct: 466 GRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNL-VKLDPCDPGNYSLL 524
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+YA+ WE R+ M G+ K +G+S +E+ H+F H
Sbjct: 525 SNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSH 574
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 108/235 (45%), Gaps = 12/235 (5%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI A + + A +F ++ NV N+++ + ++ + +F EM+ + D
Sbjct: 57 LISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFAD 116
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG--SIEQSLEV 261
T +L AC+ L +H + GL+S+ + ALID Y++CG + ++++
Sbjct: 117 NFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKL 176
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K +D WN+M+ GL G A +L EM + D I++ +L + +
Sbjct: 177 FEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMP----QRDLISWNTMLDGYARCREM 232
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL 376
+ ELF +M + R + MV +A ++ A + + MP P ++++
Sbjct: 233 SKAFELFEKMPE-----RNTVSWSTMVMGYSKAGDMEMARVMFDKMPL-PAKNVV 281
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 17/222 (7%)
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
L CANL ++ ++H L + H LI + C ++ VF + Q +V
Sbjct: 26 LPKCANLNQVK---QLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
N++I A + Y A + EM + AD+ T+ LL ACS + + +
Sbjct: 83 HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 142
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLL--DRAIELIEAMPFEPT---ESILGALLSACVI 385
+EK G++ + ++D R L A++L E M T S+LG L+ A +
Sbjct: 143 IEK-LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEL 201
Query: 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
+ D + + N + DG YA C + +A
Sbjct: 202 RDARRLFDEMPQRDLISWNTMLDG--------YARCREMSKA 235
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 341 bits (875), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 183/507 (36%), Positives = 284/507 (56%), Gaps = 47/507 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ E + + Y+FP L+KAA +SS +G LHG +K+ V+V +L+ Y S
Sbjct: 122 VSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGD 181
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV------------- 107
+D A KVF + EKD+++WNSM++ F G D A++L M +DV
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241
Query: 108 --------------------------TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW 141
T N M+ Y + G I A+ +FD + KD V+W
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK-AGNV 200
+++ Y + + E A E+ M K+++ WN +++ Y ++ E + +F E++ N+
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
K + +T+ S LSACA +G+LE G IH Y +G+ N H T+ALI MY+KCG +E+S E
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF + +DVF W+AMI GLA+HG G A+ + +M ++ VK + +TF + ACSH GL
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 481
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V E LF +ME ++G+ + +HY C+VD+LGR+ L++A++ IEAMP P+ S+ GALL
Sbjct: 482 VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYL---SDGELMMFANLYASCGQWEEANRWRNMMNDT 437
AC IH +L + A+M C + L +DG ++ +N+YA G+WE + R M T
Sbjct: 542 GACKIHANLNL----AEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVT 597
Query: 438 GIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G+ K G S IE++G H+FL+G H
Sbjct: 598 GLKKEPGCSSIEIDGMIHEFLSGDNAH 624
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 185/394 (46%), Gaps = 56/394 (14%)
Query: 23 LSSSCIGL----MLHGQTIKTGFCGHVYVQTALLKM--YGSLRCIDDAFKVFEKMPEKDI 76
L C+ L HG I+TG Y + L M S ++ A KVF+++P+ +
Sbjct: 36 LIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNS 95
Query: 77 IAWNSMLDAFASCGQMDHAMKLIDLMPL-------KDVTSFNIMISGYARIGKIHSARYI 129
AWN+++ A+AS D + + + + + +F +I A + + + +
Sbjct: 96 FAWNTLIRAYASGP--DPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153
Query: 130 ----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
DV NSLI Y + G+++ A ++F + K+V++WN+M+ G+++
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213
Query: 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245
+ ++LF +M++ +VK ++T+ VLSACA + +LE G ++ Y +N + N A+
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAM 273
Query: 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL------------ 293
+DMY KCGSIE + +F + KD W M+ G A+ AA ++L
Sbjct: 274 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWN 333
Query: 294 ---------GEMNDSCV-----------KADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G+ N++ + K + IT + LSAC+ G ++ G + S ++K
Sbjct: 334 ALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKK 393
Query: 334 -----DFGVTRKLEHYGCMVDLLGRARLLDRAIE 362
+F VT L H L ++R + ++E
Sbjct: 394 HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE 427
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 3/250 (1%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR-SQLYIEVVDLFDEMKAGNVKPDYL 205
A ++ +E A ++F ++ N WNT++ Y + + D + P+
Sbjct: 73 ALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKY 132
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
T ++ A A + SL G +H A + + S+ +LI Y CG ++ + +VF
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ KDV WN+MI G G AL+L +M VKA +T +G+LSAC+ ++ G
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385
++ S +E++ V L M+D+ + ++ A L +AM E +L I
Sbjct: 253 QVCSYIEEN-RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAI 310
Query: 386 HQDLEIGDRV 395
+D E V
Sbjct: 311 SEDYEAAREV 320
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/495 (35%), Positives = 281/495 (56%), Gaps = 36/495 (7%)
Query: 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62
E GV D +S L+LKA L G+ +HG KTG +++Q L+ +Y C+
Sbjct: 114 ENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLG 173
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL------------------ 104
+ ++F++MP++D +++NSM+D + CG + A +L DLMP+
Sbjct: 174 LSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQT 233
Query: 105 ----------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
KD+ S+N MI GY + G+I A+ +FD +P +DVV+W ++I Y
Sbjct: 234 SDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGY 293
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTV 207
G + A +F +M ++V+ +N+M+ GY++++ ++E +++F +M K ++ PD T+
Sbjct: 294 AKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTL 353
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
VL A A LG L +H+Y + ALIDMY+KCGSI+ ++ VF +
Sbjct: 354 VIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIEN 413
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
K + WNAMI GLA+HG G +A +L ++ +K DDITF+G+L+ACSH+GLV+EG
Sbjct: 414 KSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLC 473
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F M + + +L+HYGCMVD+L R+ ++ A LIE MP EP + I L+AC H+
Sbjct: 474 FELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHK 533
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
+ E G+ VAK + ++ Y + ++ +N+YAS G W++ R R MM + I K G S
Sbjct: 534 EFETGELVAKHLILQAGY-NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSW 592
Query: 448 IEVNGSYHKFLAGGI 462
IE++G H+F I
Sbjct: 593 IELDGRVHEFFVDSI 607
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 158/364 (43%), Gaps = 61/364 (16%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGS---------LRCIDDAFKV--FEKMPEKDIIAWN 80
+HG+ IKTG + + T ++ + S RC+ + V F +D WN
Sbjct: 31 IHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLWN 90
Query: 81 S-----------------------------------MLDAFASCGQMDHAMKLIDLMP-- 103
+ +L A + G + M++ +
Sbjct: 91 AVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKT 150
Query: 104 --LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
D+ N +I Y + G + +R +FD++P +D VS+NS+I Y G + A E+F
Sbjct: 151 GLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELF 210
Query: 162 K--KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
M +KN+I+WN+M++GY ++ + VD+ ++ A + D ++ S++ G
Sbjct: 211 DLMPMEMKNLISWNSMISGYAQTS---DGVDIASKLFADMPEKDLISWNSMIDGYVKHGR 267
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+E + + + +ID YAK G + + +F + +DV +N+M+ G
Sbjct: 268 IEDAKGLFDVMPRRDVVT----WATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAG 323
Query: 280 LALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCEL-FSRMEKDFGV 337
+ Y AL++ +M +S + DD T + +L A + G + + ++ +EK F +
Sbjct: 324 YVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYL 383
Query: 338 TRKL 341
KL
Sbjct: 384 GGKL 387
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 6/203 (2%)
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
V++ WN ++ + + + + L M V D +++ VL AC+ LG ++ G +
Sbjct: 83 VEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQ 142
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
IH + GL S+ LI +Y KCG + S ++F + +D +N+MI G G
Sbjct: 143 IHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGL 202
Query: 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345
+A +L M + I S S +G ++ S++ D + L +
Sbjct: 203 IVSARELFDLM-----PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMP-EKDLISWN 256
Query: 346 CMVDLLGRARLLDRAIELIEAMP 368
M+D + ++ A L + MP
Sbjct: 257 SMIDGYVKHGRIEDAKGLFDVMP 279
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 209 SVLSACANLGSLETG---ARIHVYATDNGLASNPHATTALIDMYA-----------KCGS 254
S+ S LGS +T +IH G+ N + TT ++ +A +C
Sbjct: 11 SISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVF 70
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYG---YAALKLLGEMNDSCVKADDITFIGL 311
E + F +V+D F WNA+I H +G AL LL M ++ V D + +
Sbjct: 71 HEYHVCSFSFGEVEDPFLWNAVIKS---HSHGKDPRQALLLLCLMLENGVSVDKFSLSLV 127
Query: 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
L ACS G V+ G ++ ++K G+ L C++ L + L + ++ + MP
Sbjct: 128 LKACSRLGFVKGGMQIHGFLKKT-GLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP 183
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 327 bits (837), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 190/508 (37%), Positives = 285/508 (56%), Gaps = 42/508 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M LG+ ++Y+FP +LK+ + G +HG +K G +YV T+L+ MY
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
++DA KVF+K P +D++++ +++ +AS G +++A KL D +P+KDV S+N MISGYA
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244
Query: 121 GKIHSARYIF----------DKVPAKDVVS----------------W------------- 141
G A +F D+ VVS W
Sbjct: 245 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV 304
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N+LI Y+ GE+E A +F+++ K+VI+WNT++ GY LY E + LF EM
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSL 259
P+ +T+ S+L ACA+LG+++ G IHVY G+ + T+LIDMYAKCG IE +
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+VF K + WNAMI G A+HG A+ L M ++ DDITF+GLLSACSH+G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379
++ G +F M +D+ +T KLEHYGCM+DLLG + L A E+I M EP I +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439
L AC +H ++E+G+ A+ + K + G ++ +N+YAS G+W E + R ++ND G+
Sbjct: 545 LKACKMHGNVELGESFAENLI-KIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 603
Query: 440 VKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
K G S IE++ H+F+ G H N
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRN 631
Score = 178 bits (451), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 188/380 (49%), Gaps = 43/380 (11%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLK---MYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87
++H Q IK G Y + L++ + + A VF+ + E +++ WN+M A
Sbjct: 51 IIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHA 110
Query: 88 SCGQMDHAMKL------IDLMP----------------------------LK-----DVT 108
A+KL + L+P LK D+
Sbjct: 111 LSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLY 170
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
+IS Y + G++ A +FDK P +DVVS+ +LI Y + G +E A ++F ++ VK+
Sbjct: 171 VHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V++WN M++GY + Y E ++LF +M NV+PD T+ +V+SACA GS+E G ++H+
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL 290
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYA 288
+ D+G SN ALID+Y+KCG +E + +F + KDV WN +I G
Sbjct: 291 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKE 350
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF-GVTRKLEHYGCM 347
AL L EM S +D+T + +L AC+H G + G + ++K GVT +
Sbjct: 351 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSL 410
Query: 348 VDLLGRARLLDRAIELIEAM 367
+D+ + ++ A ++ ++
Sbjct: 411 IDMYAKCGDIEAAHQVFNSI 430
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 323 bits (827), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 174/467 (37%), Positives = 274/467 (58%), Gaps = 9/467 (1%)
Query: 2 QELGVHADNYSFPLLLKAAGILSSSCI--GLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59
+E DN++F L K+ + S C+ GL LH Q + GFC +YV T ++ MY
Sbjct: 70 KETCFAPDNFTFTTLTKSCSL--SMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFG 127
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP-LKDVTSFNIMISGYA 118
+ A F++MP + ++W +++ + CG++D A KL D MP +KDV +N M+ G+
Sbjct: 128 KMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFV 187
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+ G + SAR +FD++ K V++W ++I Y N +++ A ++F M +N+++WNTM+ G
Sbjct: 188 KSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGG 247
Query: 179 YLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
Y +++ E + LF EM+A ++ PD +T+ SVL A ++ G+L G H + L
Sbjct: 248 YCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDK 307
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
TA++DMY+KCG IE++ +F + K V WNAMI G AL+G AAL L M
Sbjct: 308 KVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM 367
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
K D+IT + +++AC+H GLV+EG + F M ++ G+ K+EHYGCMVDLLGRA L
Sbjct: 368 IE-EKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSL 425
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
A +LI MPFEP IL + LSAC ++D+E +R+ K + +DG ++ NL
Sbjct: 426 KEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKA-VELEPQNDGNYVLLRNL 484
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ +W++ +N+M K G S+IE+N +F++G H
Sbjct: 485 YAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTH 531
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 117/294 (39%), Gaps = 46/294 (15%)
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N+M+ YL ++ Y + L+ +++ PD T T++ +C+ + G ++H
Sbjct: 46 NSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIW 105
Query: 232 DNGLASNPHATTALIDMYAK-------------------------------CGSIEQSLE 260
G ++ + +T ++DMYAK CG ++ + +
Sbjct: 106 RFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASK 165
Query: 261 VFYK-SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
+F + VKDV +NAM+ G G +A +L EM V IT+ ++ +
Sbjct: 166 LFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV----ITWTTMIHGYCNIK 221
Query: 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPTESI 375
+ +LF M + R L + M+ + + I L + M +P +
Sbjct: 222 DIDAARKLFDAMPE-----RNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVT 276
Query: 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
+ ++L A L +G+ V K ++Y+ CG+ E+A R
Sbjct: 277 ILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKR 330
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/511 (34%), Positives = 278/511 (54%), Gaps = 49/511 (9%)
Query: 1 MQELGVHADNYSFPLLL----KAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYG 56
M + GV D+++FP LL + G L+ G LH +K G ++YVQ AL+KMY
Sbjct: 125 MLKEGVTPDSHTFPFLLNGLKRDGGALAC---GKKLHCHVVKFGLGSNLYVQNALVKMYS 181
Query: 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLI-----DLMPLKDVTSF- 110
+D A VF++ ++D+ +WN M+ + + + +++L+ +L+ VT
Sbjct: 182 LCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLL 241
Query: 111 ---------------------------------NIMISGYARIGKIHSARYIFDKVPAKD 137
N +++ YA G++ A IF + A+D
Sbjct: 242 VLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARD 301
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
V+SW S++ Y G ++ A F +M V++ I+W M+ GYLR+ + E +++F EM++
Sbjct: 302 VISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQS 361
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257
+ PD T+ SVL+ACA+LGSLE G I Y N + ++ ALIDMY KCG E+
Sbjct: 362 AGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEK 421
Query: 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317
+ +VF+ +D F W AM++GLA +G G A+K+ +M D ++ DDIT++G+LSAC+H
Sbjct: 422 AQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNH 481
Query: 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377
+G+V + + F++M D + L HYGCMVD+LGRA L+ A E++ MP P + G
Sbjct: 482 SGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWG 541
Query: 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMND 436
ALL A +H D + + AK + +G + + N+YA C +W++ R + D
Sbjct: 542 ALLGASRLHNDEPMAELAAKKILELEP--DNGAVYALLCNIYAGCKRWKDLREVRRKIVD 599
Query: 437 TGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467
I KT G S+IEVNG H+F+AG HL +
Sbjct: 600 VAIKKTPGFSLIEVNGFAHEFVAGDKSHLQS 630
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 148/314 (47%), Gaps = 19/314 (6%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRC--IDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
LH Q+I G + Q L + S + A+K+F K+PE D++ WN+M+ ++
Sbjct: 53 LHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKV 112
Query: 90 GQMDHAMKLIDLMPLKDVT----SFNIMISGYARIG-------KIHSARYIFDKVPAKDV 138
++L M + VT +F +++G R G K+H F ++
Sbjct: 113 DCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGL--GSNL 170
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
N+L+ Y+ G M+ A +F + ++V +WN M++GY R + Y E ++L EM+
Sbjct: 171 YVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERN 230
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
V P +T+ VLSAC+ + + R+H Y ++ + AL++ YA CG ++ +
Sbjct: 231 LVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIA 290
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
+ +F + +DV W +++ G G LKL D D I++ ++ A
Sbjct: 291 VRIFRSMKARDVISWTSIVKGYVERG----NLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 319 GLVQEGCELFSRME 332
G E E+F M+
Sbjct: 347 GCFNESLEIFREMQ 360
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 311 bits (797), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 168/490 (34%), Positives = 272/490 (55%), Gaps = 40/490 (8%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D++++P+L K L S +G M+ G +K +V A + M+ S +++A KV
Sbjct: 154 PDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKV 213
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSF------------ 110
F++ P +D+++WN +++ + G+ + A+ + LM + DVT
Sbjct: 214 FDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDL 273
Query: 111 ----------------------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
N ++ +++ G IH AR IFD + + +VSW ++I Y
Sbjct: 274 NRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGY 333
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G ++ + ++F M K+V+ WN M+ G ++++ + + LF EM+ N KPD +T+
Sbjct: 334 ARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMI 393
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
LSAC+ LG+L+ G IH Y L+ N T+L+DMYAKCG+I ++L VF+ Q +
Sbjct: 394 HCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTR 453
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
+ + A+I GLALHG A+ EM D+ + D+ITFIGLLSAC H G++Q G + F
Sbjct: 454 NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYF 513
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQD 388
S+M+ F + +L+HY MVDLLGRA LL+ A L+E+MP E ++ GALL C +H +
Sbjct: 514 SQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGN 573
Query: 389 LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+E+G++ AK + + + G ++ +Y WE+A R R MMN+ G+ K G S I
Sbjct: 574 VELGEKAAKKLL-ELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
Query: 449 EVNGSYHKFL 458
EVNG +F+
Sbjct: 633 EVNGIVCEFI 642
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 146/344 (42%), Gaps = 46/344 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV D+ + L+ + +L G + + G + + AL+ M+
Sbjct: 248 MESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGD 307
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I +A ++F+ + ++ I++W +M+ +A CG +D + KL D M KDV +N MI G +
Sbjct: 308 IHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQA 367
Query: 121 GKIHSARYIFDKVP----------------------AKDVVSW----------------- 141
+ A +F ++ A DV W
Sbjct: 368 KRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALG 427
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
SL+ Y G + +A +F + +N +T+ ++ G + F+EM +
Sbjct: 428 TSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIA 487
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSL 259
PD +T +LSAC + G ++TG R + + NP + ++D+ + G +E++
Sbjct: 488 PDEITFIGLLSACCHGGMIQTG-RDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEAD 546
Query: 260 EVFYKSQVK-DVFCWNAMILGLALHG---YGYAALKLLGEMNDS 299
+ ++ D W A++ G +HG G A K L E++ S
Sbjct: 547 RLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPS 590
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 4/210 (1%)
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAG--NVKPD 203
A + + ++ + ++ K + N+ +WN + G+ S+ E L+ +M + G +PD
Sbjct: 96 ALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPD 155
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+ T + CA+L G I + L H A I M+A CG +E + +VF
Sbjct: 156 HFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFD 215
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
+S V+D+ WN +I G G A+ + M VK DD+T IGL+S+CS G +
Sbjct: 216 ESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNR 275
Query: 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
G E + + K+ G+ + ++D+ +
Sbjct: 276 GKEFYEYV-KENGLRMTIPLVNALMDMFSK 304
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/503 (34%), Positives = 271/503 (53%), Gaps = 40/503 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ +G D +SF +LKA +S+ G+ LHG K +V+T + MY S
Sbjct: 102 IRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGR 161
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIM----ISG 116
I+ A VF++M +D++ WN+M++ + G +D A KL + M +V ++ +S
Sbjct: 162 INYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSA 221
Query: 117 YARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNV--- 169
R G + R I++ + DV +L+ Y AG M+ A E F+KM V+N+
Sbjct: 222 CGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVS 281
Query: 170 ----------------------------ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
+ W TM++ Y+ S E + +F+EM +K
Sbjct: 282 TAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK 341
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
PD +++ SV+SACANLG L+ +H NGL S ALI+MYAKCG ++ + +V
Sbjct: 342 PDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDV 401
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F K ++V W++MI L++HG AL L M V+ +++TF+G+L CSH+GLV
Sbjct: 402 FEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLV 461
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLS 381
+EG ++F+ M ++ +T KLEHYGCMVDL GRA LL A+E+IE+MP I G+L+S
Sbjct: 462 EEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMS 521
Query: 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441
AC IH +LE+G AK + + DG L++ +N+YA +WE+ R +M + + K
Sbjct: 522 ACRIHGELELGKFAAKRI-LELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFK 580
Query: 442 TAGSSVIEVNGSYHKFLAGGIGH 464
G S I+ NG H+FL G H
Sbjct: 581 EKGLSRIDQNGKSHEFLIGDKRH 603
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
I +N + RS + + ++ + D + +L A + + +L G +H
Sbjct: 77 IVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGV 136
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
A +P T +DMYA CG I + VF + +DV WN MI G A
Sbjct: 137 AFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEA 196
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAG 319
KL EM DS V D++ ++SAC G
Sbjct: 197 FKLFEEMKDSNVMPDEMILCNIVSACGRTG 226
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/384 (41%), Positives = 234/384 (60%), Gaps = 3/384 (0%)
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
S L AF Q+ HA ++ L DV + N +I+ YA G A +FD++P D VS
Sbjct: 126 SNLSAFEETTQI-HA-QITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVS 183
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
WNS+I Y AG+M+ A +F+KM KN I+W TM++GY+++ + E + LF EM+ +V
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+PD +++ + LSACA LG+LE G IH Y + + LIDMYAKCG +E++LE
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALE 303
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF + K V W A+I G A HG+G A+ EM +K + ITF +L+ACS+ GL
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363
Query: 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380
V+EG +F ME+D+ + +EHYGC+VDLLGRA LLD A I+ MP +P I GALL
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
Query: 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
AC IH+++E+G+ + +++ A Y G + AN++A +W++A R +M + G+
Sbjct: 424 KACRIHKNIELGEEIGEILIAIDPY-HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVA 482
Query: 441 KTAGSSVIEVNGSYHKFLAGGIGH 464
K G S I + G+ H+FLAG H
Sbjct: 483 KVPGCSTISLEGTTHEFLAGDRSH 506
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 137/314 (43%), Gaps = 41/314 (13%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y+FP LLKA LS+ +H Q K G+ VY +L+ Y A +F++
Sbjct: 116 YTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDR 175
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIF 130
+PE D ++WNS++ + G+MD A+ L M K+ S+ MISGY + A +F
Sbjct: 176 IPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLF 235
Query: 131 DKVPAKDVVSWN---------------------------------------SLILAYTNA 151
++ DV N LI Y
Sbjct: 236 HEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKC 295
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
GEME+A E+FK + K+V W +++GY E + F EM+ +KP+ +T T+VL
Sbjct: 296 GEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVL 355
Query: 212 SACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-D 269
+AC+ G +E G I + D L ++D+ + G ++++ + +K +
Sbjct: 356 TACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPN 415
Query: 270 VFCWNAMILGLALH 283
W A++ +H
Sbjct: 416 AVIWGALLKACRIH 429
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 35/281 (12%)
Query: 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197
+ + S ++ T++ + A +F + WN M+ G+ S + L+ M
Sbjct: 49 ITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLC 108
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA------- 250
+ + T S+L AC+NL + E +IH T G ++ +A +LI+ YA
Sbjct: 109 SSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKL 168
Query: 251 ------------------------KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
K G ++ +L +F K K+ W MI G
Sbjct: 169 AHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMN 228
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
AL+L EM +S V+ D+++ LSAC+ G +++G + S + K R GC
Sbjct: 229 KEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNK--TRIRMDSVLGC 286
Query: 347 -MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
++D+ + ++ A+E+ + + + ++ AL+S H
Sbjct: 287 VLIDMYAKCGEMEEALEVFKNIKKKSVQA-WTALISGYAYH 326
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 81/188 (43%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V DN S L A L + G +H KT + L+ MY
Sbjct: 238 MQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGE 297
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM-KLIDLMPL---KDVTSFNIMISG 116
+++A +VF+ + +K + AW +++ +A G A+ K +++ + +V +F +++
Sbjct: 298 MEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTA 357
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + + IF D + + ++ AG +++A ++M +K N +
Sbjct: 358 CSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAV 417
Query: 171 TWNTMVTG 178
W ++
Sbjct: 418 IWGALLKA 425
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS---IEQSLEVFYKS 265
S L C+ L+ +IH GL + +A T + S + + VF
Sbjct: 19 SCLQRCSKQEELK---QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGF 75
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
D F WN MI G + +L L M S + TF LL ACS+ +E
Sbjct: 76 DRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETT 135
Query: 326 ELFSRMEK 333
++ +++ K
Sbjct: 136 QIHAQITK 143
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 265/512 (51%), Gaps = 51/512 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G + YSF +L A L+ G+ +H K+ F VY+ +AL+ MY
Sbjct: 143 MHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGN 202
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------P----------- 103
++DA +VF++M ++++++WNS++ F G A+ + +M P
Sbjct: 203 VNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISA 262
Query: 104 -----------------------LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVS 140
D+ N + YA+ +I AR+IFD +P ++V++
Sbjct: 263 CASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIA 322
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
S+I Y A + A MF KM +NV++WN ++ GY ++ E + LF +K +V
Sbjct: 323 ETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV 382
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA------SNPHATTALIDMYAKCGS 254
P + + ++L ACA+L L G + HV+ +G + +LIDMY KCG
Sbjct: 383 CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
+E+ VF K +D WNAMI+G A +GYG AL+L EM +S K D IT IG+LSA
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSA 502
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
C HAG V+EG FS M +DFGV +HY CMVDLLGRA L+ A +IE MP +P
Sbjct: 503 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSV 562
Query: 375 ILGALLSACVIHQDLEIGDRVAK--MVCAKSNYLSDGELMMFANLYASCGQWEEANRWRN 432
I G+LL+AC +H+++ +G VA+ + SN G ++ +N+YA G+WE+ R
Sbjct: 563 IWGSLLAACKVHRNITLGKYVAEKLLEVEPSN---SGPYVLLSNMYAELGKWEDVMNVRK 619
Query: 433 MMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M G+ K G S I++ G H F+ H
Sbjct: 620 SMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSH 651
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 168/343 (48%), Gaps = 44/343 (12%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H IK+GF +++Q L+ Y ++D +VF+KMP+++I WNS++ G
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA---------------RYIFDKVPA- 135
+D A L MP +D ++N M+SG+A+ + A Y F V +
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 136 -----------------------KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
DV ++L+ Y+ G + A +F +M +NV++W
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N+++T + ++ +E +D+F M V+PD +T+ SV+SACA+L +++ G +H
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
Query: 233 NG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N L ++ + A +DMYAKC I+++ +F +++V +MI G A+ AA
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARL 341
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334
+ +M + V +++ L++ + G +E LF ++++
Sbjct: 342 MFTKMAERNV----VSWNALIAGYTQNGENEEALSLFCLLKRE 380
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 140/259 (54%), Gaps = 2/259 (0%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y++ G + R +FDK+P +++ +WNS++ T G +++A +F+ M ++
Sbjct: 59 NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
TWN+MV+G+ + E + F M K G V +Y + SVLSAC+ L + G ++H
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEY-SFASVLSACSGLNDMNKGVQVHSL 177
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
+ S+ + +AL+DMY+KCG++ + VF + ++V WN++I +G A
Sbjct: 178 IAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEA 237
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L + M +S V+ D++T ++SAC+ ++ G E+ R+ K+ + + VD
Sbjct: 238 LDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVD 297
Query: 350 LLGRARLLDRAIELIEAMP 368
+ + + A + ++MP
Sbjct: 298 MYAKCSRIKEARFIFDSMP 316
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 169/498 (33%), Positives = 273/498 (54%), Gaps = 43/498 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G++ DN++ P++LK+ G L G +HG +K G YV +L+ MY SL I+
Sbjct: 41 GLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEIT 100
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--------------------- 103
KVF++MP++D+++WN ++ ++ G+ + A+ + M
Sbjct: 101 HKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSA 160
Query: 104 LKD-----------VTSF-------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLI 145
LK+ VT F N ++ + + G + AR +FD + K+V W S++
Sbjct: 161 LKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMV 220
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y + G +++A +F++ VK+V+ W M+ GY++ + E ++LF M+ ++PD
Sbjct: 221 FGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNF 280
Query: 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265
+ S+L+ CA G+LE G IH Y +N + + TAL+DMYAKCG IE +LEVFY+
Sbjct: 281 VLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEI 340
Query: 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325
+ +D W ++I GLA++G AL L EM + V+ D ITF+ +L+AC+H G V EG
Sbjct: 341 KERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGR 400
Query: 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG---ALLSA 382
++F M + V K EH C++DLL RA LLD A ELI+ M E E+++ +LLSA
Sbjct: 401 KIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSA 460
Query: 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442
+ +++I +RVA+ + K + A++YAS +WE+ R M D GI K
Sbjct: 461 ARNYGNVKIAERVAEKL-EKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKF 519
Query: 443 AGSSVIEVNGSYHKFLAG 460
G S IE++G H+F+ G
Sbjct: 520 PGCSSIEIDGVGHEFIVG 537
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 105/201 (52%), Gaps = 3/201 (1%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+++ +N M+ + + +V+ LF E++ + PD T+ VL + L + G ++H
Sbjct: 10 SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVH 69
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
YA GL + + + +L+ MYA G IE + +VF + +DV WN +I +G
Sbjct: 70 GYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFE 129
Query: 288 AALKLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
A+ + M+ +S +K D+ T + LSACS ++ G ++ + +F ++ ++ +
Sbjct: 130 DAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGN--A 187
Query: 347 MVDLLGRARLLDRAIELIEAM 367
+VD+ + LD+A + ++M
Sbjct: 188 LVDMFCKCGCLDKARAVFDSM 208
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 37/276 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ DN+ LL + G +HG + V TAL+ MY C
Sbjct: 270 MQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGC 329
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I+ A +VF ++ E+D +W S++ A G A+ L
Sbjct: 330 IETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLY--------------------- 368
Query: 121 GKIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT----- 174
Y + V + D +++ +++ A + G + + ++F M ++ + +
Sbjct: 369 -------YEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSC 421
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
++ R+ L E +L D+M+ + + S+LSA N G+++ R+ +
Sbjct: 422 LIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERV-AEKLEKV 480
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
S+ A T L +YA E V + ++KD+
Sbjct: 481 EVSDSSAHTLLASVYASANRWEDVTNV--RRKMKDL 514
>sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470
OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
Length = 523
Score = 301 bits (770), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/471 (33%), Positives = 262/471 (55%), Gaps = 39/471 (8%)
Query: 14 PLLLKA-AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
PL+L+A A ++ +G +LH ++IK G C V V ++L+ MYG C+ A KVF++MP
Sbjct: 49 PLILRACACVVPRVVLGKLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMP 108
Query: 73 EKDIIAWNSMLDAFASCG--------------------------------QMDHAMKLID 100
E+++ WN+M+ + S G +++ A +L +
Sbjct: 109 ERNVATWNAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIEKARELFE 168
Query: 101 LMP--LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAG 158
MP LK+V ++++M+ Y K+ AR F+ +P K+ W+ ++ Y G++ +A
Sbjct: 169 RMPFELKNVKAWSVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEAR 228
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
+F ++ ++++ WNT++ GY ++ + +D F M+ +PD +TV+S+LSACA G
Sbjct: 229 AIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSG 288
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
L+ G +H G+ N + ALIDMYAKCG +E + VF V+ V C N+MI
Sbjct: 289 RLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMIS 348
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
LA+HG G AL++ M +K D+ITFI +L+AC H G + EG ++FS M K V
Sbjct: 349 CLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEM-KTQDVK 407
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
++H+GC++ LLGR+ L A L++ M +P +++LGALL AC +H D E+ ++V K+
Sbjct: 408 PNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPNDTVLGALLGACKVHMDTEMAEQVMKI 467
Query: 399 V---CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446
+ + +N S+ L +NLYA +W+ A R M G+ K+ G S
Sbjct: 468 IETAGSITNSYSENHLASISNLYAHTERWQTAEALRVEMEKRGLEKSPGLS 518
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 16/253 (6%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G D + +L A +G +H G + +V AL+ MY
Sbjct: 265 MQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGD 324
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL------IDLMPLKDVTSFNIMI 114
+++A VFE + + + NSM+ A G+ A+++ +DL P D +F ++
Sbjct: 325 LENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKP--DEITFIAVL 382
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ G + IF ++ +DV + LI +G++++A + K+M VK
Sbjct: 383 TACVHGGFLMEGLKIFSEMKTQDVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPND 442
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEM--KAGNVKPDYLT--VTSVLSACANLGSLETGARI 226
T + G + + E+ + ++ AG++ Y + S+ + A+ +T +
Sbjct: 443 TVLGALLGACKVHMDTEMAEQVMKIIETAGSITNSYSENHLASISNLYAHTERWQTAEAL 502
Query: 227 HVYATDNGLASNP 239
V GL +P
Sbjct: 503 RVEMEKRGLEKSP 515
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 170/468 (36%), Positives = 251/468 (53%), Gaps = 11/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV ++FP LLKA L S H +K G +V+ +L+ Y S
Sbjct: 95 MRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGL 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-MISGYAR 119
D A ++F+ +KD++ W +M+D F G AM M V + + ++S
Sbjct: 154 FDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKA 213
Query: 120 IGKIHSAR--------YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
GK+ R Y+ DV +SL+ Y + A ++F +M +NV+T
Sbjct: 214 AGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVT 273
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W ++ GY++S+ + + + +F+EM +V P+ T++SVLSACA++G+L G R+H Y
Sbjct: 274 WTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMI 333
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
N + N A T LID+Y KCG +E+++ VF + K+V+ W AMI G A HGY A
Sbjct: 334 KNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFD 393
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
L M S V +++TF+ +LSAC+H GLV+EG LF M+ F + K +HY CMVDL
Sbjct: 394 LFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLF 453
Query: 352 GRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411
GR LL+ A LIE MP EPT + GAL +C++H+D E+G A V K G
Sbjct: 454 GRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVI-KLQPSHSGRY 512
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
+ ANLY+ W+E R R M D +VK+ G S IEV G +F+A
Sbjct: 513 TLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIA 560
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 298 bits (763), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 164/455 (36%), Positives = 256/455 (56%), Gaps = 40/455 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ GV D Y+F +LKA L G HG+ ++ GF + YV+ AL+ +
Sbjct: 103 MEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFH----- 157
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A+CG + A +L D +++ M SGYA+
Sbjct: 158 --------------------------ANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKR 191
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
GKI A +FD++P KD V+WN +I EM+ A E+F + K+V+TWN M++GY+
Sbjct: 192 GKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYV 251
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LASNP 239
E + +F EM+ PD +T+ S+LSACA LG LETG R+H+Y + ++S+
Sbjct: 252 NCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSI 311
Query: 240 HATT----ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295
+ T ALIDMYAKCGSI++++EVF + +D+ WN +I+GLALH + ++++ E
Sbjct: 312 YVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEE 370
Query: 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355
M V +++TFIG++ ACSH+G V EG + FS M + + ++HYGCMVD+LGRA
Sbjct: 371 MQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAG 430
Query: 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGELMMF 414
L+ A +E+M EP + LL AC I+ ++E+G K++ + + G+ ++
Sbjct: 431 QLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD--ESGDYVLL 488
Query: 415 ANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+N+YAS GQW+ + R M +DT + K G S+IE
Sbjct: 489 SNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 17/285 (5%)
Query: 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210
G ++ A ++F ++ +V N ++ G +S + V L+ EM+ V PD T T V
Sbjct: 59 PGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFV 118
Query: 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV 270
L AC+ L G H +G N + ALI +A CG + + E+F S
Sbjct: 119 LKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHK 178
Query: 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330
W++M G A G A++L EM D + + +++ C + ELF R
Sbjct: 179 VAWSSMTSGYAKRGKIDEAMRLFDEMP----YKDQVAWNVMITGCLKCKEMDSARELFDR 234
Query: 331 MEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQ 387
+ VT + M+ A+ + + M P + +LLSAC +
Sbjct: 235 FTEKDVVT-----WNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLG 289
Query: 388 DLEIGDRVAKMV-----CAKSNYLSDGELMMFANLYASCGQWEEA 427
DLE G R+ + + S Y+ ++YA CG + A
Sbjct: 290 DLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRA 334
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/429 (36%), Positives = 248/429 (57%), Gaps = 16/429 (3%)
Query: 44 HVYVQTALLKMY--GSLRCIDDAFKVFEKMPEK-----DIIAWNSMLDAFASCG-----Q 91
+V++ ++++ Y SL C D ++++++ K D + M + AS G +
Sbjct: 72 NVFLYNSIIRAYTHNSLYC--DVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGK 129
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
H L P V + N +I Y + + A +FD++ +DV+SWNSL+ Y
Sbjct: 130 QVHG-HLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARL 188
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211
G+M+KA +F ML K +++W M++GY Y+E +D F EM+ ++PD +++ SVL
Sbjct: 189 GQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVL 248
Query: 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF 271
+CA LGSLE G IH+YA G ALI+MY+KCG I Q++++F + + KDV
Sbjct: 249 PSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVI 308
Query: 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
W+ MI G A HG + A++ EM + VK + ITF+GLLSACSH G+ QEG F M
Sbjct: 309 SWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMM 368
Query: 332 EKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEI 391
+D+ + K+EHYGC++D+L RA L+RA+E+ + MP +P I G+LLS+C +L++
Sbjct: 369 RQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDV 428
Query: 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVN 451
VA + G ++ AN+YA G+WE+ +R R M+ + + KT G S+IEVN
Sbjct: 429 A-LVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487
Query: 452 GSYHKFLAG 460
+F++G
Sbjct: 488 NIVQEFVSG 496
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 150/311 (48%), Gaps = 41/311 (13%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D ++FP + K+ L S +G +HG K G HV + AL+ MY + DA KV
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F++M E+D+I+WNS+L +A GQM A L LM K + S+ MISGY IG A
Sbjct: 167 FDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAM 226
Query: 128 YIFDKVP----AKDVVS------------------W-----------------NSLILAY 148
F ++ D +S W N+LI Y
Sbjct: 227 DFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMY 286
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
+ G + +A ++F +M K+VI+W+TM++GY ++ F+EM+ VKP+ +T
Sbjct: 287 SKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFL 346
Query: 209 SVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+LSAC+++G + G R + D + LID+ A+ G +E+++E+ +
Sbjct: 347 GLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPM 406
Query: 268 K-DVFCWNAMI 277
K D W +++
Sbjct: 407 KPDSKIWGSLL 417
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 146/355 (41%), Gaps = 79/355 (22%)
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+I + A +F++V +V +NS+I AYT+
Sbjct: 54 KIEDMDYATRLFNQVSNPNVFLYNSIIRAYTH---------------------------- 85
Query: 179 YLRSQLYIEVVDLFDEMKAGNVK-PDYLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237
+ LY +V+ ++ ++ + + PD T + +CA+LGS G ++H + G
Sbjct: 86 ---NSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRF 142
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY------------ 285
+ ALIDMY K + + +VF + +DV WN+++ G A G
Sbjct: 143 HVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLML 202
Query: 286 ------------GYA-------ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
GY A+ EM + ++ D+I+ I +L +C+ G ++ G
Sbjct: 203 DKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKW 262
Query: 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH 386
+ E+ G ++ ++++ + ++ +AI+L M + S ++S H
Sbjct: 263 IHLYAERR-GFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVIS-WSTMISGYAYH 320
Query: 387 QD----LEIGDRVAKMVCAKSNYLSDGELMMFANLYASC---GQWEEANRWRNMM 434
+ +E + + + K N ++ F L ++C G W+E R+ +MM
Sbjct: 321 GNAHGAIETFNEMQR-AKVKPNGIT------FLGLLSACSHVGMWQEGLRYFDMM 368
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+ D S +L + L S +G +H + GF V AL++MY
Sbjct: 232 MQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGV 291
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISG 116
I A ++F +M KD+I+W++M+ +A G A++ + M V I ++S
Sbjct: 292 ISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSA 351
Query: 117 YARIGKIHSARYIFDKVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
+ +G FD + + + LI AG++E+A E+ K M +K
Sbjct: 352 CSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK 407
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 264/476 (55%), Gaps = 16/476 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ V D+++FP LLKA LS +G +H Q + GF V+VQ L+ +Y R
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169
Query: 61 IDDAFKVFE--KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMI 114
+ A VFE +PE+ I++W +++ A+A G+ A+++ M DV + ++
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVL 229
Query: 115 SGYARIGKIHSARYIFDKVPAKDVVSWNSLILA----YTNAGEMEKAGEMFKKMLVKNVI 170
+ + + + R I V + L+++ Y G++ A +F KM N+I
Sbjct: 230 NAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
WN M++GY ++ E +D+F EM +V+PD +++TS +SACA +GSLE ++ Y
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+ + ++ALIDM+AKCGS+E + VF ++ +DV W+AMI+G LHG A+
Sbjct: 350 GRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L M V +D+TF+GLL AC+H+G+V+EG F+RM D + + +HY C++DL
Sbjct: 410 SLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDL 468
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA--KSNYLSD 408
LGRA LD+A E+I+ MP +P ++ GALLSAC H+ +E+G+ A+ + + SN
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN---T 525
Query: 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
G + +NLYA+ W+ R M + G+ K G S +EV G F G H
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSH 581
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 160/334 (47%), Gaps = 14/334 (4%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+H+D++ L+ A + +H + + G ++ T L+ S I A
Sbjct: 17 GIHSDSFYASLIDSA----THKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFA 72
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMISGYARI 120
+VF+ +P I WN+++ ++ A+ + M L V+ +F ++ + +
Sbjct: 73 RQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGL 132
Query: 121 GKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--KNVITWNT 174
+ R++ +V DV N LI Y + A +F+ + + + +++W
Sbjct: 133 SHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTA 192
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234
+V+ Y ++ +E +++F +M+ +VKPD++ + SVL+A L L+ G IH G
Sbjct: 193 IVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294
L P +L MYAKCG + + +F K + ++ WNAMI G A +GY A+ +
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
EM + V+ D I+ +SAC+ G +++ ++
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMY 346
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 89/235 (37%), Gaps = 37/235 (15%)
Query: 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG 284
+IH GL + T LI + G I + +VF +F WNA+I G + +
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
+ AL + M + V D TF LL ACS +Q G + +++ + G +
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR-LGFDADVFVQ 157
Query: 345 GCMVDLLGRARLLDRAIELIEAMPF-------------------EPTESI---------- 375
++ L + R L A + E +P EP E++
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 376 -------LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
L ++L+A QDL+ G + V + L+ +YA CGQ
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/435 (35%), Positives = 236/435 (54%), Gaps = 32/435 (7%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
I +A + F+ M +D+++WN+++ +A G++D A +L D P++DV ++ M+SGY +
Sbjct: 235 IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQN 294
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR +FDK+P ++ VSWN+++ Y ME A E+F M +NV TWNTM+TGY
Sbjct: 295 RMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYA 354
Query: 181 RSQLYIEVVDLFDEMKAGNV-------------------------------KPDYLTVTS 209
+ E +LFD+M + + + + +S
Sbjct: 355 QCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
LS CA++ +LE G ++H G + AL+ MY KCGSIE++ ++F + KD
Sbjct: 415 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD 474
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329
+ WN MI G + HG+G AL+ M +K DD T + +LSACSH GLV +G + F
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534
Query: 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDL 389
M +D+GV +HY CMVDLLGRA LL+ A L++ MPFEP +I G LL A +H +
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 594
Query: 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
E+ + A + A S G ++ +NLYAS G+W + + R M D G+ K G S IE
Sbjct: 595 ELAETAADKIFAMEPENS-GMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653
Query: 450 VNGSYHKFLAGGIGH 464
+ H F G H
Sbjct: 654 IQNKTHTFSVGDEFH 668
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 149/287 (51%), Gaps = 12/287 (4%)
Query: 49 TALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT 108
+L Y C+DDA VF++MPEK+ ++WN++L A+ +M+ A L +
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220
Query: 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168
S+N ++ G+ + KI AR FD + +DVVSWN++I Y +G++++A ++F + V++
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQD 280
Query: 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228
V TW MV+GY+++++ E +LFD+M N +S A L G R+ +
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERN----------EVSWNAMLAGYVQGERMEM 330
Query: 229 YAT--DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
D N +I YA+CG I ++ +F K +D W AMI G + G+
Sbjct: 331 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+ AL+L +M + + +F LS C+ ++ G +L R+ K
Sbjct: 391 FEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 437
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 186/372 (50%), Gaps = 28/372 (7%)
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123
A K+F++MPE+D+++WN M+ + + A +L ++MP +DV S+N M+SGYA+ G +
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173
Query: 124 HSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQ 183
AR +FD++P K+ VSWN+L+ AY +ME+A +FK +++WN ++ G+++ +
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKK 233
Query: 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243
+E FD M NV+ D ++ ++++ A G ++ ++ D + T
Sbjct: 234 KIVEARQFFDSM---NVR-DVVSWNTIITGYAQSGKIDEARQLF----DESPVQDVFTWT 285
Query: 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303
A++ Y + +E++ E+F K ++ WNAM+ G + G +++ E+ D
Sbjct: 286 AMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGY-VQG---ERMEMAKELFDVMPCR 341
Query: 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363
+ T+ +++ + G + E LF +M K V+ + M+ ++ A+ L
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS-----WAAMIAGYSQSGHSFEALRL 396
Query: 364 IEAMPFEP---TESILGALLSACVIHQDLEIGD----RVAKMVCAKSNYLSDGELMMFAN 416
M E S + LS C LE+G R+ K ++ + L+M
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLM--- 453
Query: 417 LYASCGQWEEAN 428
Y CG EEAN
Sbjct: 454 -YCKCGSIEEAN 464
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 17/299 (5%)
Query: 70 KMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYI 129
K + DI WN + ++ G+ + A+++ MP S+N MISGY R G+ AR +
Sbjct: 58 KCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKL 117
Query: 130 FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189
FD++P +D+VSWN +I Y + KA E+F+ M ++V +WNTM++GY ++ +
Sbjct: 118 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDAR 177
Query: 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249
+FD M N ++ ++LSA +E + + L S L+ +
Sbjct: 178 SVFDRMPEKND----VSWNALLSAYVQNSKMEEACMLFKSRENWALVS----WNCLLGGF 229
Query: 250 AKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309
K I ++ + F V+DV WN +I G A G A +L D D T+
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF----DESPVQDVFTWT 285
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++S +V+E ELF +M + V+ + M+ + ++ A EL + MP
Sbjct: 286 AMVSGYIQNRMVEEARELFDKMPERNEVS-----WNAMLAGYVQGERMEMAKELFDVMP 339
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 12/254 (4%)
Query: 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101
C +V ++ Y I +A +F+KMP++D ++W +M+ ++ G A++L
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQ 399
Query: 102 MPLK----DVTSFNIMISGYA-----RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152
M + + +SF+ +S A +GK R + V N+L+L Y G
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG-NALLLMYCKCG 458
Query: 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212
+E+A ++FK+M K++++WNTM+ GY R + F+ MK +KPD T+ +VLS
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Query: 213 ACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-DV 270
AC++ G ++ G + + D G+ N ++D+ + G +E + + + D
Sbjct: 519 ACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA 578
Query: 271 FCWNAMILGLALHG 284
W ++ +HG
Sbjct: 579 AIWGTLLGASRVHG 592
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G + SF L + + +G LHG+ +K G+ +V ALL MY
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGS 459
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
I++A +F++M KDI++WN+M+ ++ G + A++ + M + D + ++S
Sbjct: 460 IEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSA 519
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ G + R F + V NS ++ AG +E A + K M + +
Sbjct: 520 CSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAA 579
Query: 171 TWNTMV 176
W T++
Sbjct: 580 IWGTLL 585
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 153/405 (37%), Positives = 237/405 (58%), Gaps = 2/405 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+ A F++MP KD +WN+M+ +A G+M+ A +L M K+ S+N MISGY
Sbjct: 140 FEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIEC 199
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV-KNVITWNTMVTGY 179
G + A + F P + VV+W ++I Y A ++E A MFK M V KN++TWN M++GY
Sbjct: 200 GDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGY 259
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ + + + LF M ++P+ ++S L C+ L +L+ G +IH + + L ++
Sbjct: 260 VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDV 319
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
A T+LI MY KCG + + ++F + KDV WNAMI G A HG AL L EM D+
Sbjct: 320 TALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDN 379
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
++ D ITF+ +L AC+HAGLV G F M +D+ V + +HY CMVDLLGRA L+
Sbjct: 380 KIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEE 439
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A++LI +MPF P ++ G LL AC +H+++E+ + A+ + ++ + G + + AN+YA
Sbjct: 440 ALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQL-ANIYA 498
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S +WE+ R R M ++ +VK G S IE+ H F + H
Sbjct: 499 SKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIH 543
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 51/338 (15%)
Query: 107 VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT-NAGEMEKAGEMFKKML 165
+ N +I+ R G I A +F + AK+ ++WNSL++ + + M +A ++F ++
Sbjct: 61 IFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP 120
Query: 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225
+ ++N M++ Y+R+ + + FD M D + ++++ A G +E AR
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK----DAASWNTMITGYARRGEMEK-AR 175
Query: 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285
Y+ + N + A+I Y +CG +E++ F + V+ V W AMI GY
Sbjct: 176 ELFYSM---MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMIT-----GY 227
Query: 286 GYAALKLLGE--MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343
A L E D V + +T+ ++S ++G +LF M
Sbjct: 228 MKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAM------------ 275
Query: 344 YGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403
L+ I P S L + L C L++G ++ ++V +KS
Sbjct: 276 -------------LEEGI--------RPNSSGLSSALLGCSELSALQLGRQIHQIV-SKS 313
Query: 404 NYLSD-GELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
+D L ++Y CG+ +A + +M +V
Sbjct: 314 TLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVV 351
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 9/176 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ ++ L LS+ +G +H K+ C V T+L+ MY
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGE 334
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMI-- 114
+ DA+K+FE M +KD++AWN+M+ +A G D A+ ++ID D +F ++
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLA 394
Query: 115 ---SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK 167
+G IG + + D + ++ AG++E+A ++ + M +
Sbjct: 395 CNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 161/472 (34%), Positives = 262/472 (55%), Gaps = 9/472 (1%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+++ G++ ++FPL+LKA SS +G+ LH +K GF V T+LL +Y
Sbjct: 102 IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---LKDVTSFNIMI-SG 116
++DA K+F+++P++ ++ W ++ + + G+ A+ L M +K + F + + S
Sbjct: 162 LNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221
Query: 117 YARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+G + S +I + K+ +L+ Y G+MEKA +F M+ K+++TW
Sbjct: 222 CVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTW 281
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+TM+ GY + E ++LF +M N+KPD ++ LS+CA+LG+L+ G
Sbjct: 282 STMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+ +N ALIDMYAKCG++ + EVF + + KD+ NA I GLA +G+ + +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
G+ + D TF+GLL C HAGL+Q+G F+ + + + R +EHYGCMVDL G
Sbjct: 402 FGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWG 461
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA +LD A LI MP P + GALLS C + +D ++ + V K + A + + G +
Sbjct: 462 RAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPW-NAGNYV 520
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+N+Y+ G+W+EA R+MMN G+ K G S IE+ G H+FLA H
Sbjct: 521 QLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSH 572
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219
+F N+ +N+++ G++ + L+ E +DLF ++ + T VL AC S
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
+ G +H G + A T+L+ +Y+ G + + ++F + + V W A+ G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
G A+ L +M + VK D + +LSAC H G + G + ME+
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE 240
>sp|P0C8Q5|PP336_ARATH Pentatricopeptide repeat-containing protein At4g22760
OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1
Length = 578
Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/488 (34%), Positives = 269/488 (55%), Gaps = 37/488 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ +++ +L+A G + + G +H Q +K G CG VYVQT L+ +Y L
Sbjct: 95 MHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGY 154
Query: 61 I-------------------------------DDAFKVFEKMPEKDIIAWNSMLDAFASC 89
I D+A +VF+K+PEKD ++WN ++ ++A
Sbjct: 155 IELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISSYAKK 214
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
G M +A L MPLK S+NI+I GY ++ AR FD +P K+ VSW ++I YT
Sbjct: 215 GDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYT 274
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN--VKPDYLTV 207
G+++ A E+F+ M K+ + ++ M+ Y ++ + + LF +M N ++PD +T+
Sbjct: 275 KLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITL 334
Query: 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+SV+SA + LG+ G + Y T++G+ + +T+LID+Y K G ++ ++F
Sbjct: 335 SSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNK 394
Query: 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
KD ++AMI+G ++G A L M + + + +TF GLLSA SH+GLVQEG +
Sbjct: 395 KDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKC 454
Query: 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQ 387
F+ M KD + +HYG MVD+LGRA L+ A ELI++MP +P + GALL A +H
Sbjct: 455 FNSM-KDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHN 513
Query: 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSV 447
++E G+ +A C K G L A +Y+S G+W++A R+ + + + KT G S
Sbjct: 514 NVEFGE-IACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDSIKEKKLCKTLGCSW 572
Query: 448 IEVNGSYH 455
+E GSYH
Sbjct: 573 VE--GSYH 578
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+W +V + + + E VD++ +M + P VTSVL AC + ++ G IH
Sbjct: 70 FSWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQ 129
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY-GYA 288
A NGL + T L+ +Y++ G IE + + F K+ WN++ LHGY
Sbjct: 130 ALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSL-----LHGYLESG 184
Query: 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
L + D + D +++ ++S+ + G + C LFS M
Sbjct: 185 ELDEARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAM 227
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/407 (36%), Positives = 238/407 (58%), Gaps = 4/407 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
ID+A +FE+MP +D+++W +M+D A G++D A +L D MP +++ S+N MI+GYA+
Sbjct: 187 IDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQN 246
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+I A +F +P +D SWN++I + EM KA +F +M KNVI+W TM+TGY+
Sbjct: 247 NRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYV 306
Query: 181 RSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E +++F +M + G+VKP+ T S+LSAC++L L G +IH + + N
Sbjct: 307 ENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNE 366
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMN 297
T+AL++MY+K G + + ++F V +D+ WN+MI A HG+G A+++ +M
Sbjct: 367 IVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMR 426
Query: 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357
K +T++ LL ACSHAGLV++G E F + +D + + EHY C+VDL GRA L
Sbjct: 427 KHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRL 486
Query: 358 DRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417
I + S GA+LSAC +H ++ I V K V ++ G ++ +N+
Sbjct: 487 KDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVL-ETGSDDAGTYVLMSNI 545
Query: 418 YASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
YA+ G+ EEA R M + G+ K G S ++V H F+ G H
Sbjct: 546 YAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSH 592
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 146/285 (51%), Gaps = 13/285 (4%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-PLKDVTSFNIMISGYAR 119
I +A K+F+ +PE+D++ W ++ + G M A +L D + K+V ++ M+SGY R
Sbjct: 62 IAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLR 121
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
++ A +F ++P ++VVSWN++I Y +G ++KA E+F +M +N+++WN+MV
Sbjct: 122 SKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKAL 181
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
++ E ++LF+ M + D ++ T+++ A G ++ R+ + + S
Sbjct: 182 VQRGRIDEAMNLFERMP----RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIIS-- 235
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
A+I YA+ I+++ ++F +D WN MI G + A L M +
Sbjct: 236 --WNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEK 293
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344
V I++ +++ +E +FS+M +D V + Y
Sbjct: 294 NV----ISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTY 334
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 158/319 (49%), Gaps = 19/319 (5%)
Query: 12 SFPLLLKAAGILSSSC-IGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKVFE 69
S P + + ++ C +G + + + G V T ++ Y L + +A ++F+
Sbjct: 42 SRPRVPQPEWLIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFD 101
Query: 70 KM-PEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
++ K+++ W +M+ + Q+ A L MP ++V S+N MI GYA+ G+I A
Sbjct: 102 RVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALE 161
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+FD++P +++VSWNS++ A G +++A +F++M ++V++W MV G ++ E
Sbjct: 162 LFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEA 221
Query: 189 VDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI-- 246
LFD M N+ ++ ++++ A ++ ++ + AS T I
Sbjct: 222 RRLFDCMPERNI----ISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRN 277
Query: 247 -DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM-NDSCVKAD 304
+M CG +F + K+V W MI G + AL + +M D VK +
Sbjct: 278 REMNKACG-------LFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPN 330
Query: 305 DITFIGLLSACSH-AGLVQ 322
T++ +LSACS AGLV+
Sbjct: 331 VGTYVSILSACSDLAGLVE 349
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 170/356 (47%), Gaps = 26/356 (7%)
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA-KDVVSWNSLILAY 148
G++ A KL D +P +DV ++ +I+GY ++G + AR +FD+V + K+VV+W +++ Y
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
+ ++ A +F++M +NV++WNTM+ GY +S + ++LFDEM N+ ++
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI----VSWN 175
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
S++ A G ++ + + S TA++D AK G ++++ +F +
Sbjct: 176 SMVKALVQRGRIDEAMNLFERMPRRDVVS----WTAMVDGLAKNGKVDEARRLFDCMPER 231
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
++ WNAMI G A + A +L M + + + G + + + C LF
Sbjct: 232 NIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNRE----MNKACGLF 287
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPTESILGALLSACV 384
RM + ++ + M+ + + A+ + M +P ++LSAC
Sbjct: 288 DRMPEKNVIS-----WTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACS 342
Query: 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440
L G ++ +++ + ++ N+Y+ G+ A + M D G+V
Sbjct: 343 DLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARK----MFDNGLV 394
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 20/258 (7%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVIT 171
+I ++GKI AR +FD +P +DVV+W +I Y G+M +A E+F ++ KNV+T
Sbjct: 52 LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVT 111
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
W MV+GYLRS+ LF EM NV ++ +++ A G ++ +
Sbjct: 112 WTAMVSGYLRSKQLSIAEMLFQEMPERNV----VSWNTMIDGYAQSGRIDKALELFDEMP 167
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ + S AL+ + G I++++ +F + +DV W AM+ GLA +G A +
Sbjct: 168 ERNIVSWNSMVKALV----QRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARR 223
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM-EKDFGVTRKLEHYGCMVDL 350
L M + + I++ +++ + + E +LF M E+DF + M+
Sbjct: 224 LFDCMPERNI----ISWNAMITGYAQNNRIDEADQLFQVMPERDFA------SWNTMITG 273
Query: 351 LGRARLLDRAIELIEAMP 368
R R +++A L + MP
Sbjct: 274 FIRNREMNKACGLFDRMP 291
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 255/468 (54%), Gaps = 36/468 (7%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
+H + I+T +V L+++ +L +D A+ VF + ++ + +M+D F S G+
Sbjct: 48 IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGR 107
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISG----------------------------------- 116
+ L M V N +I+
Sbjct: 108 SADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEI 167
Query: 117 YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMV 176
Y + G++ +A+ +FD++P +D V+ +I Y+ G +++A E+F+ + +K+ + W M+
Sbjct: 168 YGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMI 227
Query: 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236
G +R++ + ++LF EM+ NV + T VLSAC++LG+LE G +H + + +
Sbjct: 228 DGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRME 287
Query: 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM 296
+ ALI+MY++CG I ++ VF + KDV +N MI GLA+HG A+ +M
Sbjct: 288 LSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDM 347
Query: 297 NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ + + +T + LL+ACSH GL+ G E+F+ M++ F V ++EHYGC+VDLLGR
Sbjct: 348 VNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGR 407
Query: 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416
L+ A IE +P EP +LG LLSAC IH ++E+G+++AK + N S G ++ +N
Sbjct: 408 LEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDS-GTYVLLSN 466
Query: 417 LYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
LYAS G+W+E+ R M D+GI K G S IEV+ H+FL G I H
Sbjct: 467 LYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAH 514
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/377 (21%), Positives = 171/377 (45%), Gaps = 49/377 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V DNY +LKA + + +H Q +K GF V ++++YG + +A
Sbjct: 123 VLPDNYVITSVLKACDLK----VCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAK 178
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
K+F++MP++D +A M++ ++ CG + A++L + +KD + MI G R +++
Sbjct: 179 KMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNK 238
Query: 126 ARYIFDKVPAKDVVS----------------------W-----------------NSLIL 146
A +F ++ ++V + W N+LI
Sbjct: 239 ALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALIN 298
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
Y+ G++ +A +F+ M K+VI++NTM++G +E ++ F +M +P+ +T
Sbjct: 299 MYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVT 358
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATT--ALIDMYAKCGSIEQSLEVFYK 264
+ ++L+AC++ G L+ G + + P ++D+ + G +E++
Sbjct: 359 LVALLNACSHGGLLDIGLEV-FNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIEN 417
Query: 265 SQVK-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323
++ D ++ +HG K+ + +S D T++ L + + +G +E
Sbjct: 418 IPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFES-ENPDSGTYVLLSNLYASSGKWKE 476
Query: 324 GCELFSRMEKDFGVTRK 340
E+ M +D G+ ++
Sbjct: 477 STEIRESM-RDSGIEKE 492
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 288 bits (736), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 147/355 (41%), Positives = 222/355 (62%), Gaps = 5/355 (1%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM--LVKNVI 170
+I Y G + AR +FD++ KDV WN+L+ Y GEM++A + + M V+N +
Sbjct: 157 LIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEV 216
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+W +++GY +S E +++F M NV+PD +T+ +VLSACA+LGSLE G RI Y
Sbjct: 217 SWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYV 276
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G+ A+IDMYAK G+I ++L+VF ++V W +I GLA HG+G AL
Sbjct: 277 DHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEAL 336
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
+ M + V+ +D+TFI +LSACSH G V G LF+ M +G+ +EHYGCM+DL
Sbjct: 337 AMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDL 396
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR-VAKMVCAKSNYLSDG 409
LGRA L A E+I++MPF+ +I G+LL+A +H DLE+G+R +++++ + N + G
Sbjct: 397 LGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPN--NSG 454
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M+ ANLY++ G+W+E+ RNMM G+ K AG S IEV +KF++G + H
Sbjct: 455 NYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTH 509
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 158/318 (49%), Gaps = 43/318 (13%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
D ++FP +LK A +S G +HGQ + GF V+V T L++MY S + DA K+F
Sbjct: 115 DTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMF 174
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP--LKDVTSFNIMISGYARIGKIHSA 126
++M KD+ WN++L + G+MD A L+++MP +++ S+ +ISGYA+ G+ A
Sbjct: 175 DEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEA 234
Query: 127 RYIFDKVPAKDV--------------------------------------VSWNSLIL-A 147
+F ++ ++V VS N+ ++
Sbjct: 235 IEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDM 294
Query: 148 YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207
Y +G + KA ++F+ + +NV+TW T++ G E + +F+ M V+P+ +T
Sbjct: 295 YAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTF 354
Query: 208 TSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
++LSAC+++G ++ G R+ + + G+ N +ID+ + G + ++ EV
Sbjct: 355 IAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMP 414
Query: 267 VK-DVFCWNAMILGLALH 283
K + W +++ +H
Sbjct: 415 FKANAAIWGSLLAASNVH 432
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 110/267 (41%), Gaps = 38/267 (14%)
Query: 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL---RSQLYIEVVDLF 192
+D ++ I A +NAG + A +F N NTM+ + + ++
Sbjct: 45 RDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVY 104
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
++ A KPD T VL + + G +IH G S+ H T LI MY C
Sbjct: 105 RKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSC 164
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G + + ++F + VKDV WNA++ G G A LL M C +++++ ++
Sbjct: 165 GGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMM--PCWVRNEVSWTCVI 222
Query: 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372
S + +G E E+F RM L+E + EP
Sbjct: 223 SGYAKSGRASEAIEVFQRM-------------------------------LMENV--EPD 249
Query: 373 ESILGALLSACVIHQDLEIGDRVAKMV 399
E L A+LSAC LE+G+R+ V
Sbjct: 250 EVTLLAVLSACADLGSLELGERICSYV 276
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D + +L A L S +G + G V + A++ MY I A
Sbjct: 246 VEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKAL 305
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-----PLKDVTSFNIMISGYARI 120
VFE + E++++ W +++ A+ G A+ + + M DVT F ++S + +
Sbjct: 306 DVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVT-FIAILSACSHV 364
Query: 121 GKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-NVITWNT 174
G + + +F+ + +K ++ + +I AG++ +A E+ K M K N W +
Sbjct: 365 GWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGS 424
Query: 175 MVTG 178
++
Sbjct: 425 LLAA 428
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/468 (33%), Positives = 252/468 (53%), Gaps = 11/468 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ D +++ + A L +G +H K G V++ +L+ MY
Sbjct: 123 MKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQ 182
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+ A K+F+++ E+D ++WNSM+ ++ G AM L M + D + M+
Sbjct: 183 VGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGA 242
Query: 117 YARIGKIHSARYIFDKVPAKDV----VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ +G + + R + + K + + LI Y G+++ A +F +M+ K+ + W
Sbjct: 243 CSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAW 302
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+T Y ++ E LF EM+ V PD T+++VLSAC ++G+LE G +I +A++
Sbjct: 303 TAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASE 362
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
L N + T L+DMY KCG +E++L VF VK+ WNAMI A G+ AL L
Sbjct: 363 LSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLL 422
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
M+ V DITFIG+LSAC HAGLV +GC F M FG+ K+EHY ++DLL
Sbjct: 423 FDRMS---VPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLS 479
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
RA +LD A E +E P +P E +L A+L AC +D+ I ++ +M+ + G +
Sbjct: 480 RAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYV 539
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ +N+ A W+E+ + R +M D G+VKT G S IE+ G +FLAG
Sbjct: 540 ISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLAG 587
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 152/383 (39%), Gaps = 81/383 (21%)
Query: 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAY 148
C ++ ++ M L V N +I +G + + ++F + S+N +I
Sbjct: 47 CISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGL 106
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
TN TWN + + L+ MK +KPD T
Sbjct: 107 TN--------------------TWND----------HEAALSLYRRMKFSGLKPDKFTYN 136
Query: 209 SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
V ACA L + G +H GL + H +LI MYAKCG + + ++F + +
Sbjct: 137 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITER 196
Query: 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328
D WN+MI G + GY A+ L +M + + D+ T + +L ACSH G ++ G
Sbjct: 197 DTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTG---- 252
Query: 329 SRMEKDFGVTRK-----------LEHYGCMVDLLGRARLLDRAIEL-------------- 363
R+ ++ +T+K + YG DL R+ ++ I+
Sbjct: 253 -RLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQ 311
Query: 364 -------------IEAMPFEPTESILGALLSACVIHQDLEIGDRV----AKMVCAKSNYL 406
+E P L +LSAC LE+G ++ +++ + Y+
Sbjct: 312 NGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYV 371
Query: 407 SDGELMMFANLYASCGQWEEANR 429
+ G ++Y CG+ EEA R
Sbjct: 372 ATG----LVDMYGKCGRVEEALR 390
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/457 (35%), Positives = 258/457 (56%), Gaps = 17/457 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G D ++FP + KA G S G +HG K GF +YVQ +L+ YG +A
Sbjct: 101 GFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNA 160
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKI 123
KVF +MP +D+++W ++ F G A+ M ++ ++ ++ ++ R+G +
Sbjct: 161 CKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCL 220
Query: 124 HSAR----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ I + + + N+LI Y ++ A +F ++ K+ ++WN+M++G
Sbjct: 221 SLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGL 280
Query: 180 LRSQLYIEVVDLFDEMKAGN-VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
+ + E +DLF M+ + +KPD +TSVLSACA+LG+++ G +H Y G+ +
Sbjct: 281 VHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWD 340
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
H TA++DMYAKCG IE +LE+F + K+VF WNA++ GLA+HG+G +L+ EM
Sbjct: 341 THIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVK 400
Query: 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRME-KDFGVTRKLEHYGCMVDLLGRARLL 357
K + +TF+ L+AC H GLV EG F +M+ +++ + KLEHYGCM+DLL RA LL
Sbjct: 401 LGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLL 460
Query: 358 DRAIELIEAMPFEPTESILGALLSAC-----VIHQDLEIGDRVAKMVCAKSNYLSDGELM 412
D A+EL++AMP +P I GA+LSAC ++ EI D + + G +
Sbjct: 461 DEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILDSFLDI-----EFEDSGVYV 515
Query: 413 MFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449
+ +N++A+ +W++ R R +M GI K GSS IE
Sbjct: 516 LLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 129/280 (46%), Gaps = 13/280 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
++ V + ++ +L ++G + +G +HG +K + AL+ MY
Sbjct: 195 FSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQ 254
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL-----KDVTSFNIMIS 115
+ DA +VF ++ +KD ++WNSM+ C + A+ L LM D ++S
Sbjct: 255 LSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLS 314
Query: 116 GYARIGKIHSARYIFDKVPAKDVVSWNS-----LILAYTNAGEMEKAGEMFKKMLVKNVI 170
A +G + R++ + + + W++ ++ Y G +E A E+F + KNV
Sbjct: 315 ACASLGAVDHGRWVHEYILTAG-IKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVF 373
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI--HV 228
TWN ++ G +E + F+EM KP+ +T + L+AC + G ++ G R +
Sbjct: 374 TWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKM 433
Query: 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK 268
+ + L +ID+ + G ++++LE+ VK
Sbjct: 434 KSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVK 473
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 286 bits (731), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 239/430 (55%), Gaps = 34/430 (7%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D YSF +LKA G +HG IK+G V+V+ L+ +YG
Sbjct: 136 VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGR-------- 187
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
G + A K++D MP++D S+N ++S Y G +
Sbjct: 188 -----------------------SGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDE 224
Query: 126 ARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185
AR +FD++ ++V SWN +I Y AG +++A E+F M V++V++WN MVT Y Y
Sbjct: 225 ARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCY 284
Query: 186 IEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
EV+++F++M KPD T+ SVLSACA+LGSL G +HVY +G+ TA
Sbjct: 285 NEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATA 344
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMY+KCG I+++LEVF + +DV WN++I L++HG G AL++ EM K +
Sbjct: 345 LVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPN 404
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITFIG+LSAC+H G++ + +LF M + V +EHYGCMVDLLGR ++ A EL+
Sbjct: 405 GITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELV 464
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
+P + +L +LL AC LE +R+A + + S G M +NLYAS G+W
Sbjct: 465 NEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQM-SNLYASDGRW 523
Query: 425 EEA-NRWRNM 433
E+ + RNM
Sbjct: 524 EKVIDGRRNM 533
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 134/324 (41%), Gaps = 28/324 (8%)
Query: 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216
A + ++ N T N+++ Y S + +F EM G V PD + T VL ACA
Sbjct: 93 AHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAA 152
Query: 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276
E G +IH +GL ++ L+++Y + G E + +V + V+D WN++
Sbjct: 153 FCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSL 212
Query: 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336
+ G A L EM + V++ + ++S + AGLV+E E+F M
Sbjct: 213 LSAYLEKGLVDEARALFDEMEERNVESWNF----MISGYAAAGLVKEAKEVFDSMP---- 264
Query: 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG----ALLSACVIHQDLEIG 392
R + + MV + +E+ M + TE G ++LSAC L G
Sbjct: 265 -VRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQG 323
Query: 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA------------NRWRNMMNDTGIV 440
+ V + + ++Y+ CG+ ++A + W ++++D V
Sbjct: 324 EWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLS-V 382
Query: 441 KTAGSSVIEVNGS--YHKFLAGGI 462
G +E+ Y F GI
Sbjct: 383 HGLGKDALEIFSEMVYEGFKPNGI 406
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 252/462 (54%), Gaps = 37/462 (8%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
V +Y++ L+KA+ +S G L K GF HV +QT L+
Sbjct: 121 SVSPSSYTYSSLVKASSF--ASRFGESLQAHIWKFGFGFHVKIQTTLI------------ 166
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124
D +++ G++ A K+ D MP +D ++ M+S Y R+ +
Sbjct: 167 -------------------DFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMD 207
Query: 125 SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184
SA + +++ K+ + N LI Y G +E+A +F +M VK++I+W TM+ GY +++
Sbjct: 208 SANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKR 267
Query: 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244
Y E + +F +M + PD +T+++V+SACA+LG LE G +H+Y NG + + +A
Sbjct: 268 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSA 327
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
L+DMY+KCGS+E++L VF+ K++FCWN++I GLA HG+ ALK+ +M VK +
Sbjct: 328 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 387
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
+TF+ + +AC+HAGLV EG ++ M D+ + +EHYG MV L +A L+ A+ELI
Sbjct: 388 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 447
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDGELMMFANLYASCGQ 423
M FEP I GALL C IH++L I + K++ + ++ G + ++YA +
Sbjct: 448 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEP--MNSGYYFLLVSMYAEQNR 505
Query: 424 WEEANRWRNMMNDTGIVKT-AGSSVIEVNGSYHKFLAGGIGH 464
W + R M + GI K G+S I ++ H F A H
Sbjct: 506 WRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSH 547
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M E G+ D + ++ A L IG +H T++ GF VY+ +AL+ MY
Sbjct: 278 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGS 337
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV----TSFNIMISG 116
++ A VF +P+K++ WNS+++ A+ G A+K+ M ++ V +F + +
Sbjct: 338 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTA 397
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM-LVKNVI 170
G + R I+ D +V + ++ ++ AG + +A E+ M N +
Sbjct: 398 CTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAV 457
Query: 171 TWNTMVTG 178
W ++ G
Sbjct: 458 IWGALLDG 465
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 16/290 (5%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
N I A T+ ++ A +M NV +N + G++ I ++L+ M +V
Sbjct: 64 NQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVS 123
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P T +S++ A + + H++ G + T LID Y+ G I ++ +V
Sbjct: 124 PSSYTYSSLVKASSFASRFGESLQAHIWKF--GFGFHVKIQTTLIDFYSATGRIREARKV 181
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321
F + +D W M+ +A L +M++ ++ T L++ G +
Sbjct: 182 FDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEK----NEATSNCLINGYMGLGNL 237
Query: 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---PTESILGA 378
++ LF++M + + + M+ + + AI + M E P E +
Sbjct: 238 EQAESLFNQMP-----VKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMST 292
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL-MMFANLYASCGQWEEA 427
++SAC LEIG V M ++ ++ D + ++Y+ CG E A
Sbjct: 293 VISACAHLGVLEIGKEV-HMYTLQNGFVLDVYIGSALVDMYSKCGSLERA 341
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 285 bits (728), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 166/465 (35%), Positives = 253/465 (54%), Gaps = 51/465 (10%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + V + ++FP +LKA G +HG +K GF G +V + L++MY
Sbjct: 119 MSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGF 178
Query: 61 IDDAFKVFEK-MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ DA +F K + EKD++ M D G+ + +N+MI GY R
Sbjct: 179 MKDARVLFYKNIIEKDMVV---MTDRRKRDGE---------------IVLWNVMIDGYMR 220
Query: 120 IGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+G +AR +FDK+ + VVSWN++I Y+ G
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG--------------------------- 253
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ + V++F EMK G+++P+Y+T+ SVL A + LGSLE G +H+YA D+G+ +
Sbjct: 254 ----FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDD 309
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ALIDMY+KCG IE+++ VF + ++V W+AMI G A+HG A+ +M +
Sbjct: 310 VLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQA 369
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V+ D+ +I LL+ACSH GLV+EG FS+M G+ ++EHYGCMVDLLGR+ LLD
Sbjct: 370 GVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDE 429
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A E I MP +P + I ALL AC + ++E+G RVA ++ + S G + +N+YA
Sbjct: 430 AEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDS-GAYVALSNMYA 488
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
S G W E + R M + I K G S+I+++G H+F+ H
Sbjct: 489 SQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSH 533
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/444 (32%), Positives = 252/444 (56%), Gaps = 4/444 (0%)
Query: 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFK 66
D Y+FPL++K +G +HG ++ GF V V T+ + YG + + A K
Sbjct: 107 RPDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARK 166
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
VF +MPE++ ++W +++ A+ G+++ A + DLMP +++ S+N ++ G + G + +A
Sbjct: 167 VFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNA 226
Query: 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
+ +FD++P +D++S+ S+I Y G+M A ++F++ +V W+ ++ GY ++
Sbjct: 227 KKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPN 286
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD--NGLASNPHATTA 244
E +F EM A NVKPD + ++SAC+ +G E ++ Y N +S+ + A
Sbjct: 287 EAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSH-YVVPA 345
Query: 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304
LIDM AKCG ++++ ++F + +D+ + +M+ G+A+HG G A++L +M D + D
Sbjct: 346 LIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPD 405
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
++ F +L C + LV+EG F M K + + +HY C+V+LL R L A ELI
Sbjct: 406 EVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELI 465
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
++MPFE S G+LL C +H + EI + VA+ + S G ++ +N+YA+ +W
Sbjct: 466 KSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQ-SAGSYVLLSNIYAALDRW 524
Query: 425 EEANRWRNMMNDTGIVKTAGSSVI 448
+ R+ MN+ GI K G S I
Sbjct: 525 TDVAHLRDKMNENGITKICGRSWI 548
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 148/349 (42%), Gaps = 93/349 (26%)
Query: 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM-------------PL--------- 104
VFE++P WN ++ +++ + ++ M PL
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124
Query: 105 ------------------KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLIL 146
KDV + Y + + SAR +F ++P ++ VSW +L++
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184
Query: 147 AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT 206
AY +GE+E+A MF M +N+ +WN +V G ++S + LFDEM K D ++
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMP----KRDIIS 240
Query: 207 VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266
TS +ID YAK G + + ++F +++
Sbjct: 241 YTS-----------------------------------MIDGYAKGGDMVSARDLFEEAR 265
Query: 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326
DV W+A+ILG A +G A K+ EM VK D+ +GL+SACS G E CE
Sbjct: 266 GVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCF-ELCE 324
Query: 327 -----LFSRMEKDFGVTRKLEHY--GCMVDLLGRARLLDRAIELIEAMP 368
L RM K F HY ++D+ + +DRA +L E MP
Sbjct: 325 KVDSYLHQRMNK-FS-----SHYVVPALIDMNAKCGHMDRAAKLFEEMP 367
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 124/319 (38%), Gaps = 49/319 (15%)
Query: 160 MFKKMLVKNVITWNTMVTGYLRSQLYIEVVD-LFDEMKAGNVKPDYLTVTSVLSACANLG 218
+F+++ WN ++ GY L+ E V L M+ G +PD T V+ C+N G
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKC-------------------------- 252
+ G+ +H G + T+ +D Y KC
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184
Query: 253 -----GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
G +E++ +F +++ WNA++ GL G A KL EM K D I+
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMP----KRDIIS 240
Query: 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR--LLDRAIELIE 365
+ ++ + G + +LF R ++ +LG A+ + A ++
Sbjct: 241 YTSMIDGYAKGGDMVSARDLFEE-------ARGVDVRAWSALILGYAQNGQPNEAFKVFS 293
Query: 366 AM---PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASC 421
M +P E I+ L+SAC E+ ++V + + N S ++ ++ A C
Sbjct: 294 EMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKC 353
Query: 422 GQWEEANRWRNMMNDTGIV 440
G + A + M +V
Sbjct: 354 GHMDRAAKLFEEMPQRDLV 372
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 282 bits (721), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 164/487 (33%), Positives = 253/487 (51%), Gaps = 50/487 (10%)
Query: 27 CIGL----MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF--KVFEKMPEKDIIAWN 80
CI L +HG ++ G Y+ T L++ L D + +V E + ++ W
Sbjct: 59 CINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWT 118
Query: 81 SMLDAFASCGQMDHAMKLIDLMPLKDVT--SF---------------------------- 110
+++ +A G+ D A+ + M +++T SF
Sbjct: 119 AVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRL 178
Query: 111 ---------NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
N MI Y + I AR +FD++P +DV+SW LI AY G ME A E+F
Sbjct: 179 RGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELF 238
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
+ + K+++ W MVTG+ ++ E ++ FD M+ ++ D +TV +SACA LG+ +
Sbjct: 239 ESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASK 298
Query: 222 TGARIHVYATDNGLASNPHAT--TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
R A +G + + H +ALIDMY+KCG++E+++ VF K+VF +++MILG
Sbjct: 299 YADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILG 358
Query: 280 LALHGYGYAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
LA HG AL L M + +K + +TF+G L ACSH+GLV +G ++F M + FGV
Sbjct: 359 LATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQ 418
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
+HY CMVDLLGR L A+ELI+ M EP + GALL AC IH + EI + A+
Sbjct: 419 PTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEH 478
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS-VIEVNGSYHKF 457
+ + G ++ +N+YAS G W R R ++ + G+ KT S V++ NG HKF
Sbjct: 479 LFELEPDII-GNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKF 537
Query: 458 LAGGIGH 464
G + H
Sbjct: 538 FPGNLNH 544
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 156/329 (47%), Gaps = 48/329 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIK-TGFCGHVYVQTALLKMYGSLR 59
M++ + +++F LLKA G + +G H QT + GFC VYV ++ MY
Sbjct: 140 MRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFC-FVYVGNTMIDMYVKCE 198
Query: 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
ID A KVF++MPE+D+I+W ++ A+A G M+ A +L + +P KD+ ++ M++G+A+
Sbjct: 199 SIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQ 258
Query: 120 IGKIHSARYIFDKV-----------------------------------------PAKDV 138
K A FD++ P+ V
Sbjct: 259 NAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHV 318
Query: 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KA 197
V ++LI Y+ G +E+A +F M KNV T+++M+ G E + LF M
Sbjct: 319 VIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQ 378
Query: 198 GNVKPDYLTVTSVLSACANLGSLETGARI--HVYATDNGLASNPHATTALIDMYAKCGSI 255
+KP+ +T L AC++ G ++ G ++ +Y T + H T ++D+ + G +
Sbjct: 379 TEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDH-YTCMVDLLGRTGRL 437
Query: 256 EQSLEVFYKSQVKDV-FCWNAMILGLALH 283
+++LE+ V+ W A++ +H
Sbjct: 438 QEALELIKTMSVEPHGGVWGALLGACRIH 466
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 282 bits (721), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 160/469 (34%), Positives = 242/469 (51%), Gaps = 46/469 (9%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
V D+Y+FP +LKA + IG +HG K G ++V L+ MYG
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK-------- 187
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
CG + A ++D M +DV S+N ++ GYA+ +
Sbjct: 188 -----------------------CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDD 224
Query: 126 ARYIFDKVPA----KDVVSWNSLILAYTNAG--EMEKAGEMFKKMLVKNVITWNTMVTGY 179
A + ++ + D + SL+ A +N + +MF KM K++++WN M+ Y
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 284
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+++ + +E V+L+ M+A +PD +++TSVL AC + +L G +IH Y L N
Sbjct: 285 MKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 344
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMYAKCG +E++ +VF + +DV W AMI G G A+ L ++ DS
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
+ D I F+ L+ACSHAGL++EG F M + +T +LEH CMVDLLGRA +
Sbjct: 405 GLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKE 464
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIG----DRVAKMVCAKSNYLSDGELMMFA 415
A I+ M EP E + GALL AC +H D +IG D++ ++ +S Y ++ +
Sbjct: 465 AYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGY-----YVLLS 519
Query: 416 NLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
N+YA G+WEE RN+M G+ K G+S +EVN H FL G H
Sbjct: 520 NIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 175/393 (44%), Gaps = 54/393 (13%)
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNI-MISGYARIGKIHSAR 127
+K P++ + +LD + + I L L+ +S + ++ YA + + SAR
Sbjct: 35 QKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASAR 94
Query: 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187
+FD++P + NVI N M+ Y+ + Y E
Sbjct: 95 KVFDEIPER-------------------------------NVIIINVMIRSYVNNGFYGE 123
Query: 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
V +F M NV+PD+ T VL AC+ G++ G +IH AT GL+S L+
Sbjct: 124 GVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVS 183
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307
MY KCG + ++ V + +DV WN++++G A + AL++ EM + D T
Sbjct: 184 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGT 243
Query: 308 FIGLLSACSHAGL--VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL-- 363
LL A S+ V ++F +M K + L + M+ + + + A+EL
Sbjct: 244 MASLLPAVSNTTTENVMYVKDMFFKMGK-----KSLVSWNVMIGVYMKNAMPVEAVELYS 298
Query: 364 -IEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK---SNYLSDGELMMFANLYA 419
+EA FEP + ++L AC L +G ++ + K N L + L+ ++YA
Sbjct: 299 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI---DMYA 355
Query: 420 SCGQWEEAN------RWRNMMNDTGIVKTAGSS 446
CG E+A + R++++ T ++ G S
Sbjct: 356 KCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G D S +L A G S+ +G +HG + ++ ++ AL+ MY C
Sbjct: 300 MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC 359
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
++ A VFE M +D+++W +M+ A+ G+ A+ KL D + D +F ++
Sbjct: 360 LEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAA 419
Query: 117 YARIGKIHSARYIF 130
+ G + R F
Sbjct: 420 CSHAGLLEEGRSCF 433
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 281 bits (720), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 141/354 (39%), Positives = 216/354 (61%), Gaps = 3/354 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
++ YA+ G + SA+ +FD++P + +VS ++I Y G +E A +F M +++++W
Sbjct: 167 LVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSW 226
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
N M+ GY + + + LF ++ A G KPD +TV + LSAC+ +G+LETG IHV+
Sbjct: 227 NVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK 286
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+ + N T LIDMY+KCGS+E+++ VF + KD+ WNAMI G A+HGY AL+
Sbjct: 287 SSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALR 346
Query: 292 LLGEMND-SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L EM + ++ DITFIG L AC+HAGLV EG +F M +++G+ K+EHYGC+V L
Sbjct: 347 LFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSL 406
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGRA L RA E I+ M + + ++L +C +H D +G +A+ + N + G
Sbjct: 407 LGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIG-LNIKNSGI 465
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YAS G +E + RN+M + GIVK G S IE+ H+F AG H
Sbjct: 466 YVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREH 519
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 47/322 (14%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
++ + ++F LLK+ S G ++H +K G YV T L+ +Y + A
Sbjct: 126 INPNEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQ 181
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
KVF++MPE+ +++ +M+ +A G ++ A L D M +D+ S+N+MI GYA+ G +
Sbjct: 182 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPND 241
Query: 126 ARYIFDKV-----PAKDVVS------------------W-----------------NSLI 145
A +F K+ P D ++ W LI
Sbjct: 242 ALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLI 301
Query: 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-GNVKPDY 204
Y+ G +E+A +F K+++ WN M+ GY + + LF+EM+ ++P
Sbjct: 302 DMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD 361
Query: 205 LTVTSVLSACANLGSLETGARI-HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+T L ACA+ G + G RI + G+ L+ + + G ++++ E
Sbjct: 362 ITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIK 421
Query: 264 KSQVK-DVFCWNAMILGLALHG 284
+ D W++++ LHG
Sbjct: 422 NMNMDADSVLWSSVLGSCKLHG 443
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308
YA G I SL +F+++ D+F + A I +++G A L ++ S + ++ TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 309 IGLLSACS 316
LL +CS
Sbjct: 134 SSLLKSCS 141
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 281 bits (719), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 166/513 (32%), Positives = 267/513 (52%), Gaps = 51/513 (9%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSL-- 58
M+ G D+ FP +LK+ ++ G +HG ++ G +Y AL+ MY L
Sbjct: 96 MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLG 155
Query: 59 -----------------------------RCI-----DDAFKVFEKMPEKDIIAWNSMLD 84
CI D +VFE MP KD++++N+++
Sbjct: 156 MGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIA 215
Query: 85 AFASCGQMDHAMKLIDLMPLKDVT--SFNI-----MISGYARIGK---IHSARYIFDKVP 134
+A G + A++++ M D+ SF + + S Y + K IH Y+ K
Sbjct: 216 GYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHG--YVIRKGI 273
Query: 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDE 194
DV +SL+ Y + +E + +F ++ ++ I+WN++V GY+++ Y E + LF +
Sbjct: 274 DSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQ 333
Query: 195 MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254
M VKP + +SV+ ACA+L +L G ++H Y G SN +AL+DMY+KCG+
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN 393
Query: 255 IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314
I+ + ++F + V D W A+I+G ALHG+G+ A+ L EM VK + + F+ +L+A
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 453
Query: 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTES 374
CSH GLV E F+ M K +G+ ++LEHY + DLLGRA L+ A I M EPT S
Sbjct: 454 CSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGS 513
Query: 375 ILGALLSACVIHQDLEIGDRVA-KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433
+ LLS+C +H++LE+ ++VA K+ S + G ++ N+YAS G+W+E + R
Sbjct: 514 VWSTLLSSCSVHKNLELAEKVAEKIFTVDSENM--GAYVLMCNMYASNGRWKEMAKLRLR 571
Query: 434 MNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLS 466
M G+ K S IE+ H F++G H S
Sbjct: 572 MRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPS 604
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 36/220 (16%)
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+I YTN + +A +FK + V+ W +++ + L+ + + F EM+A PD
Sbjct: 45 VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPD 104
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC---GS------ 254
+ SVL +C + L G +H + G+ + + AL++MYAK GS
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGN 164
Query: 255 ---------------------------IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
I+ VF KDV +N +I G A G
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYE 224
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327
AL+++ EM + +K D T +L S V +G E+
Sbjct: 225 DALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEI 264
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 231/404 (57%), Gaps = 2/404 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D+A ++F++M E+ +I W +M+ + ++D A K+ D+MP K S+ M+ GY +
Sbjct: 188 VDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQN 247
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+I A +F+ +P K V++ N++I GE+ KA +F M +N +W T++ +
Sbjct: 248 GRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHE 307
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R+ +E +DLF M+ V+P + T+ S+LS CA+L SL G ++H + +
Sbjct: 308 RNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVY 367
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS- 299
+ L+ MY KCG + +S +F + KD+ WN++I G A HG G ALK+ EM S
Sbjct: 368 VASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSG 427
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
K +++TF+ LSACS+AG+V+EG +++ ME FGV HY CMVD+LGRA +
Sbjct: 428 STKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNE 487
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A+E+I++M EP ++ G+LL AC H L++ + AK + S G ++ +N+YA
Sbjct: 488 AMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENS-GTYILLSNMYA 546
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIG 463
S G+W + R +M + K+ G S EV H F GGI
Sbjct: 547 SQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGIN 590
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 140/271 (51%), Gaps = 12/271 (4%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
DA K+F++MP+++II+WN ++ + G++D A K+ DLMP ++V S+ ++ GY GK
Sbjct: 66 DARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGK 125
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ A +F K+P K+ VSW +++ + G ++ A ++++ + K+ I +M+ G +
Sbjct: 126 VDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKE 185
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E ++FDEM +V +T T++++ ++ +I + S
Sbjct: 186 GRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVS----W 237
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
T+++ Y + G IE + E+F VK V NAMI GL G A ++ DS +
Sbjct: 238 TSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVF----DSMKE 293
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
+D ++ ++ G E +LF M+K
Sbjct: 294 RNDASWQTVIKIHERNGFELEALDLFILMQK 324
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 120/252 (47%), Gaps = 12/252 (4%)
Query: 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
N + + G++ A KL D K ++S+N M++GY AR +FD++P ++++
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
SWN L+ Y GE+++A ++F M +NV++W +V GY+ + LF +M N
Sbjct: 81 SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKN 140
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
++ T +L G ++ +++ D + A T++I K G ++++
Sbjct: 141 ----KVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAR 192
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319
E+F + + V W M+ G + A K+ M + ++++ +L G
Sbjct: 193 EIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKT----EVSWTSMLMGYVQNG 248
Query: 320 LVQEGCELFSRM 331
+++ ELF M
Sbjct: 249 RIEDAEELFEVM 260
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 19/217 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGI---LSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS 57
MQ+ GV +FP L+ + L+S G +H Q ++ F VYV + L+ MY
Sbjct: 322 MQKQGVRP---TFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378
Query: 58 LRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT-----SFNI 112
+ + +F++ P KDII WNS++ +AS G + A+K+ MPL T +F
Sbjct: 379 CGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVA 438
Query: 113 MISGYARIGKIHSARYIFDKVPA----KDVVS-WNSLILAYTNAGEMEKAGEMFKKMLVK 167
+S + G + I++ + + K + + + ++ AG +A EM M V+
Sbjct: 439 TLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVE 498
Query: 168 -NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
+ W +++ G R+ ++V + F K ++P+
Sbjct: 499 PDAAVWGSLL-GACRTHSQLDVAE-FCAKKLIEIEPE 533
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/475 (33%), Positives = 258/475 (54%), Gaps = 13/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + G+ D Y+ +L + L + G +H TIK YV +L+ MY C
Sbjct: 341 MSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDC 400
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCG---QMDHAMKLIDLMPLK----DVTSFNIM 113
+ DA KVF+ D++ +N+M++ ++ G ++ A+ + M + + +F +
Sbjct: 401 LTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSL 460
Query: 114 ISGYARIGKIHSARYI----FDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV 169
+ A + + ++ I F D+ + ++LI Y+N ++ + +F +M VK++
Sbjct: 461 LRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
+ WN+M GY++ E ++LF E++ +PD T ++++A NL S++ G H
Sbjct: 521 VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQ 580
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289
GL NP+ T AL+DMYAKCGS E + + F + +DV CWN++I A HG G A
Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKA 640
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349
L++L +M ++ + ITF+G+LSACSHAGLV++G + F M + FG+ + EHY CMV
Sbjct: 641 LQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVS 699
Query: 350 LLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409
LLGRA L++A ELIE MP +P + +LLS C ++E+ + A+M S+ G
Sbjct: 700 LLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAIL-SDPKDSG 758
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
M +N+YAS G W EA + R M G+VK G S I +N H FL+ H
Sbjct: 759 SFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSH 813
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 30 LMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89
L +K+GF VYV T L+ Y ID A VF+ +PEK + W +M+
Sbjct: 168 FQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKM 227
Query: 90 GQMDHAMKLI------DLMP----LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV 139
G+ +++L +++P L V S ++ +IH+ +I D
Sbjct: 228 GRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHA--HILRYGLEMDAS 285
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
N LI +Y G + A ++F M KN+I+W T+++GY ++ L+ E ++LF M
Sbjct: 286 LMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFG 345
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
+KPD +S+L++CA+L +L G ++H Y L ++ + T +LIDMYAKC + +
Sbjct: 346 LKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDAR 405
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGY---AALKLLGEMNDSCVKADDITFIGLLSACS 316
+VF DV +NAMI G + G + AL + +M ++ +TF+ LL A +
Sbjct: 406 KVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASA 465
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 159/347 (45%), Gaps = 19/347 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
+ E V D Y +L A IL G +H ++ G + L+ Y
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP---LK-DVTSFNIMISG 116
+ A K+F MP K+II+W ++L + AM+L M LK D+ + + +++
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359
Query: 117 YARI------GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
A + ++H+ Y D NSLI Y + A ++F +V+
Sbjct: 360 CASLHALGFGTQVHA--YTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVV 417
Query: 171 TWNTMVTGYLR--SQLYI-EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIH 227
+N M+ GY R +Q + E +++F +M+ ++P LT S+L A A+L SL +IH
Sbjct: 418 LFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIH 477
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
GL + A +ALID+Y+ C ++ S VF + +VKD+ WN+M G
Sbjct: 478 GLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENE 537
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG----CELFSR 330
AL L E+ S + D+ TF +++A + VQ G C+L R
Sbjct: 538 EALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR 584
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 144/297 (48%), Gaps = 11/297 (3%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90
++HGQ I G Y+ L+ +Y + A KVFEKMPE+++++W++M+ A G
Sbjct: 65 VVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHG 124
Query: 91 QMDHAMKL-IDLMPLKDVTSFNIMISGYARI--GKIHSARYIFDKVPA--------KDVV 139
+ ++ + ++ + + ++S + + G R++ ++ + +DV
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVY 184
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199
LI Y G ++ A +F + K+ +TW TM++G ++ + LF ++ N
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244
Query: 200 VKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259
V PD +++VLSAC+ L LE G +IH + GL + LID Y KCG + +
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304
Query: 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
++F K++ W ++ G + A++L M+ +K D +L++C+
Sbjct: 305 KLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 4/230 (1%)
Query: 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNV 200
N LI Y+ AG M A ++F+KM +N+++W+TMV+ +Y E + +F E +
Sbjct: 83 NILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKD 142
Query: 201 KPDYLTVTSVLSACANLGSLETGA--RIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
P+ ++S + AC+ L ++ + +G + + T LID Y K G+I+ +
Sbjct: 143 SPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYA 202
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
VF K W MI G G Y +L+L ++ + V D +LSACS
Sbjct: 203 RLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSIL 262
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
++ G ++ + + + +G+ ++D + + A +L MP
Sbjct: 263 PFLEGGKQIHAHILR-YGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP 311
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 141/402 (35%), Positives = 230/402 (57%), Gaps = 1/402 (0%)
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D+A +F++M E++++ W +M+ + ++D A KL ++MP K S+ M+ GY
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLS 247
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
G+I A F+ +P K V++ N++I+ + GE+ KA +F M ++ TW M+ Y
Sbjct: 248 GRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYE 307
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
R +E +DLF +M+ V+P + ++ S+LS CA L SL+ G ++H + + +
Sbjct: 308 RKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVY 367
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300
+ L+ MY KCG + ++ VF + KD+ WN++I G A HG G ALK+ EM S
Sbjct: 368 VASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSG 427
Query: 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360
+ +T I +L+ACS+AG ++EG E+F ME F VT +EHY C VD+LGRA +D+A
Sbjct: 428 TMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKA 487
Query: 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420
+ELIE+M +P ++ GALL AC H L++ + AK + ++ + G ++ +++ AS
Sbjct: 488 MELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLF-ENEPDNAGTYVLLSSINAS 546
Query: 421 CGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGI 462
+W + R M + K G S IEV H F GGI
Sbjct: 547 RSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGI 588
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 14/291 (4%)
Query: 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP 103
+V L+ Y R I +A VFE MPE+++++W +M+ + G + A L MP
Sbjct: 78 NVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP 137
Query: 104 LKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163
++ S+ +M G G+I AR ++D +P KDVV+ ++I G +++A +F +
Sbjct: 138 ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDE 197
Query: 164 MLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV--TSVLSACANLGSLE 221
M +NV+TW TM+TGY ++ LF+ M P+ V TS+L G +E
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVM------PEKTEVSWTSMLLGYTLSGRIE 251
Query: 222 TGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280
V +A N A+I + + G I ++ VF + +D W MI
Sbjct: 252 DAEEFFEVMPMKPVIACN-----AMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAY 306
Query: 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331
G+ AL L +M V+ + I +LS C+ +Q G ++ + +
Sbjct: 307 ERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 135/271 (49%), Gaps = 12/271 (4%)
Query: 63 DAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122
+A ++F++M E+++++WN ++ + + A + +LMP ++V S+ M+ GY + G
Sbjct: 66 EARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGM 125
Query: 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
+ A +F ++P ++ VSW + + G ++KA +++ M VK+V+ M+ G R
Sbjct: 126 VGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCRE 185
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E +FDEM+ NV +T T++++ ++ ++ + S
Sbjct: 186 GRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVS----W 237
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
T+++ Y G IE + E F +K V NAMI+G G A ++ M D
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDR--- 294
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
D+ T+ G++ A G E +LF++M+K
Sbjct: 295 -DNATWRGMIKAYERKGFELEALDLFAQMQK 324
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 119/249 (47%), Gaps = 12/249 (4%)
Query: 83 LDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN 142
+ + G+++ A K D + K + S+N ++SGY G AR +FD++ ++VVSWN
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
L+ Y + +A +F+ M +NV++W MV GY++ + E LF M N
Sbjct: 84 GLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERN--- 140
Query: 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262
++ T + + G ++ +++ D + A+T +I + G ++++ +F
Sbjct: 141 -EVSWTVMFGGLIDDGRIDKARKLY----DMMPVKDVVASTNMIGGLCREGRVDEARLIF 195
Query: 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ + ++V W MI G + A KL M + ++++ +L + +G ++
Sbjct: 196 DEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKT----EVSWTSMLLGYTLSGRIE 251
Query: 323 EGCELFSRM 331
+ E F M
Sbjct: 252 DAEEFFEVM 260
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 17/258 (6%)
Query: 114 ISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN 173
IS +RIGKI+ AR FD + K + SWNS++ Y + G ++A ++F +M +NV++WN
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83
Query: 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233
+V+GY+++++ +E ++F+ M NV ++ T+++ G + + +
Sbjct: 84 GLVSGYIKNRMIVEARNVFELMPERNV----VSWTAMVKGYMQEGMVGEAESLFWRMPER 139
Query: 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL 293
S LID G I+++ +++ VKDV MI GL G A +
Sbjct: 140 NEVSWTVMFGGLID----DGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIF 195
Query: 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353
EM + V +T+ +++ V +LF M + V+ G L GR
Sbjct: 196 DEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLG--YTLSGR 249
Query: 354 ARLLDRAIELIEAMPFEP 371
++ A E E MP +P
Sbjct: 250 ---IEDAEEFFEVMPMKP 264
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 128/281 (45%), Gaps = 38/281 (13%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ+ GV S +L L+S G +H ++ F VYV + L+ MY
Sbjct: 322 MQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGE 381
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISG 116
+ A VF++ KDII WNS++ +AS G + A+K+ MP + + + +++
Sbjct: 382 LVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTA 441
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVK-NVI 170
+ GK+ IF+ + +K V+ ++ + AG+++KA E+ + M +K +
Sbjct: 442 CSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDAT 501
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD----YLTVTSVLSACANLGS------- 219
W ++ G ++ +++ ++ + N +PD Y+ ++S+ ++ + G
Sbjct: 502 VWGALL-GACKTHSRLDLAEVAAKKLFEN-EPDNAGTYVLLSSINASRSKWGDVAVVRKN 559
Query: 220 --------------LETGARIHVYATDNGLASNPHATTALI 246
+E G ++H++ T G+ ++P L+
Sbjct: 560 MRTNNVSKFPGCSWIEVGKKVHMF-TRGGIKNHPEQAMILM 599
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 153/458 (33%), Positives = 252/458 (55%), Gaps = 11/458 (2%)
Query: 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD 75
+L A L +G +HG +++GF V + TAL+ MY ++ A ++F+ M E++
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERN 301
Query: 76 IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGY----ARIGKIHSARYIFD 131
+++WNSM+DA+ AM + M + V ++ + G A +G + R+I
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI-H 360
Query: 132 KVPA-----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYI 186
K+ ++V NSLI Y E++ A MF K+ + +++WN M+ G+ ++ I
Sbjct: 361 KLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPI 420
Query: 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246
+ ++ F +M++ VKPD T SV++A A L IH + L N TTAL+
Sbjct: 421 DALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALV 480
Query: 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306
DMYAKCG+I + +F + V WNAMI G HG+G AAL+L EM +K + +
Sbjct: 481 DMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGV 540
Query: 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366
TF+ ++SACSH+GLV+ G + F M++++ + ++HYG MVDLLGRA L+ A + I
Sbjct: 541 TFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQ 600
Query: 367 MPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426
MP +P ++ GA+L AC IH+++ ++ A+ + + N G ++ AN+Y + WE+
Sbjct: 601 MPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLF-ELNPDDGGYHVLLANIYRAASMWEK 659
Query: 427 ANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ R M G+ KT G S++E+ H F +G H
Sbjct: 660 VGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAH 697
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 132/465 (28%), Positives = 221/465 (47%), Gaps = 54/465 (11%)
Query: 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70
Y+F LLK G + +G +HG +K+GF ++ T L MY R +++A KVF++
Sbjct: 136 YNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDR 195
Query: 71 MPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDV-TSFNIMISGYARIG-------- 121
MPE+D+++WN+++ ++ G A++++ M +++ SF ++S +
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG 255
Query: 122 -KIH--SARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
+IH + R FD + V +L+ Y G +E A ++F ML +NV++WN+M+
Sbjct: 256 KEIHGYAMRSGFDSL----VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDA 311
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238
Y++++ E + +F +M VKP ++V L ACA+LG LE G IH + + GL N
Sbjct: 312 YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 371
Query: 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298
+LI MY KC ++ + +F K Q + + WNAMILG A +G AL +M
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 431
Query: 299 SCVKADDITFIGLLSACS------HA----GLVQEGCE--------------------LF 328
VK D T++ +++A + HA G+V C +
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMI 491
Query: 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVI 385
+R+ D R + + M+D G A+EL E M +P +++SAC
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSH 551
Query: 386 HQDLEIGDRVAKMVCAKSNY---LSDGELMMFANLYASCGQWEEA 427
+E G + M+ K NY LS +L G+ EA
Sbjct: 552 SGLVEAGLKCFYMM--KENYSIELSMDHYGAMVDLLGRAGRLNEA 594
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 181/373 (48%), Gaps = 22/373 (5%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTI----KTGFCGHVYVQTALLKMYGSLRCI 61
+ A+ Y P A +L C L Q + K G + QT L+ ++ +
Sbjct: 31 IPANVYEHP-----AALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSV 85
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVT----SFNIMI--- 114
D+A +VFE + K + +++ML FA +D A++ M DV +F ++
Sbjct: 86 DEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145
Query: 115 --SGYARIGK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
R+GK IH + + D+ + L Y ++ +A ++F +M +++++
Sbjct: 146 GDEAELRVGKEIHG--LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVS 203
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WNT+V GY ++ + +++ M N+KP ++T+ SVL A + L + G IH YA
Sbjct: 204 WNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAM 263
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALK 291
+G S + +TAL+DMYAKCGS+E + ++F ++V WN+MI + A+
Sbjct: 264 RSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAML 323
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351
+ +M D VK D++ +G L AC+ G ++ G ++ + G+ R + ++ +
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMY 382
Query: 352 GRARLLDRAIELI 364
+ + +D A +
Sbjct: 383 CKCKEVDTAASMF 395
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 13/310 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M + GV + S L A L G +H +++ G +V V +L+ MY +
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKE 387
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
+D A +F K+ + +++WN+M+ FA G+ A+ M + D ++ +I+
Sbjct: 388 VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447
Query: 117 YARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
A + H A++I V K+V +L+ Y G + A +F M ++V TW
Sbjct: 448 IAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTW 507
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
N M+ GY ++LF+EM+ G +KP+ +T SV+SAC++ G +E G + +
Sbjct: 508 NAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKE 567
Query: 233 N-GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILGLALH---GYGY 287
N + + A++D+ + G + ++ + + VK V + AM+ +H +
Sbjct: 568 NYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAE 627
Query: 288 AALKLLGEMN 297
A + L E+N
Sbjct: 628 KAAERLFELN 637
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370
L+S G V E +F ++ V Y M+ + LD+A++ M ++
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVL-----YHTMLKGFAKVSDLDKALQFFVRMRYD 129
Query: 371 PTESIL---GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427
E ++ LL C +L +G + ++ L + N+YA C Q EA
Sbjct: 130 DVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEA 189
Query: 428 NRWRNMMNDTGIV 440
+ + M + +V
Sbjct: 190 RKVFDRMPERDLV 202
>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2
SV=2
Length = 775
Score = 278 bits (711), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 172/462 (37%), Positives = 250/462 (54%), Gaps = 22/462 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ G+H D L+ G + G HG I+ F V +LL MY
Sbjct: 322 MQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFEL 381
Query: 61 IDDAFKVFEKMPEK-DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR 119
+ A K+F ++ E+ + AWN+ML + G+M +K I+L + + + I I +
Sbjct: 382 LSVAEKLFCRISEEGNKEAWNTMLKGY---GKMKCHVKCIEL--FRKIQNLGIEIDSASA 436
Query: 120 IGKIHSARYIFDKVPAKDVVSW-------------NSLILAYTNAGEMEKAGEMFKKMLV 166
I S +I + K + + NSLI Y G++ A MF +
Sbjct: 437 TSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADT 496
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
NVITWN M+ Y+ + + + LFD M + N KP +T+ ++L AC N GSLE G I
Sbjct: 497 -NVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMI 555
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H Y T+ N + ALIDMYAKCG +E+S E+F KD CWN MI G +HG
Sbjct: 556 HRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDV 615
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346
+A+ L +M +S VK TF+ LLSAC+HAGLV++G +LF +M + + V L+HY C
Sbjct: 616 ESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQ-YDVKPNLKHYSC 674
Query: 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406
+VDLL R+ L+ A + +MPF P I G LLS+C+ H + E+G R+A+ A S+
Sbjct: 675 LVDLLSRSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVA-SDPQ 733
Query: 407 SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448
+DG +M AN+Y++ G+WEEA R R MM ++G+ K AG SV+
Sbjct: 734 NDGYYIMLANMYSAAGKWEEAERAREMMRESGVGKRAGHSVV 775
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 96/470 (20%), Positives = 200/470 (42%), Gaps = 45/470 (9%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLRCIDD 63
G D+++ P+++ A L +G +HG +K G F + V + + Y + D
Sbjct: 120 GQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQD 179
Query: 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL--KDVTSFN--IMISGY-- 117
A VF++MP++D++AW +++ G+ + + + M DV N + G+
Sbjct: 180 ACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQA 239
Query: 118 -ARIGKIHSARYIFDKVPAKDVVS----WNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+ +G + R + + S +S+ Y+ +G +A F+++ +++ +W
Sbjct: 240 CSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSW 299
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
+++ RS E D+F EM+ + PD + ++ +++ + + G H +
Sbjct: 300 TSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIR 359
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYK-SQVKDVFCWNAMILGLALHGYGYAALK 291
+ + + +L+ MY K + + ++F + S+ + WN M+ G ++
Sbjct: 360 HCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVKCIE 419
Query: 292 LLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF-----SRMEKDFGVTRKL-EHYG 345
L ++ + ++ D + ++S+CSH G V G L + ++ V L + YG
Sbjct: 420 LFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYG 479
Query: 346 CMVDLLGRARLL-----------------------DRAIELIEAM---PFEPTESILGAL 379
M DL R+ ++AI L + M F+P+ L L
Sbjct: 480 KMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTL 539
Query: 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429
L ACV LE G + + + + ++ ++YA CG E++
Sbjct: 540 LMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRE 589
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 139/304 (45%), Gaps = 20/304 (6%)
Query: 37 IKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM 96
I G +++V + L+ Y S + + +VF + +DI WNS++ A S G ++
Sbjct: 51 ITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSL 110
Query: 97 KLIDLMPLK----DVTSFNIMISGYARIGKIHSARYI---------FDKVPAKDVVSWNS 143
M L D + +++S A + H ++ FD+ A S
Sbjct: 111 CFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGA----S 166
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV--- 200
+ Y+ G ++ A +F +M ++V+ W +++G++++ + +M +
Sbjct: 167 FVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVD 226
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
KP+ T+ AC+NLG+L+ G +H +A NGLAS+ +++ Y+K G+ ++
Sbjct: 227 KPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYL 286
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F + +D+F W ++I LA G + + EM + + D + L++ L
Sbjct: 287 SFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMML 346
Query: 321 VQEG 324
V +G
Sbjct: 347 VPQG 350
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 58/155 (37%)
Query: 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273
C SLE+ + + GL+ N + LI YA G S VF+ +D+F W
Sbjct: 34 CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93
Query: 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333
N++I +G +L M S D T ++SAC+ G + + K
Sbjct: 94 NSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLK 153
Query: 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
G R V + L A + + MP
Sbjct: 154 HGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMP 188
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 274 bits (701), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 247/461 (53%), Gaps = 33/461 (7%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++ V D++SF ++KA S G +H Q +K G H++V T L+ MYG
Sbjct: 97 MRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGG--- 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
CG ++ A K+ D M ++ ++N +I+ R
Sbjct: 154 ----------------------------CGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYL 180
+ AR IFDK+ ++ SWN ++ Y AGE+E A +F +M ++ ++W+TM+ G
Sbjct: 186 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 245
Query: 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240
+ + E F E++ + P+ +++T VLSAC+ GS E G +H + G +
Sbjct: 246 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVS 305
Query: 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMILGLALHGYGYAALKLLGEMNDS 299
ALIDMY++CG++ + VF Q K + W +MI GLA+HG G A++L EM
Sbjct: 306 VNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAY 365
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359
V D I+FI LL ACSHAGL++EG + FS M++ + + ++EHYGCMVDL GR+ L +
Sbjct: 366 GVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQK 425
Query: 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419
A + I MP PT + LL AC H ++E+ ++V K + + + G+L++ +N YA
Sbjct: 426 AYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQV-KQRLNELDPNNSGDLVLLSNAYA 484
Query: 420 SCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
+ G+W++ R M I KT S++EV + +KF AG
Sbjct: 485 TAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAG 525
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 17/231 (7%)
Query: 168 NVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARI 226
+ +NT+V GY S V +F EM + G V PD + V+ A N SL TG ++
Sbjct: 69 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
H A +GL S+ T LI MY CG +E + +VF + ++ WNA+I G
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITA-CFRGND 187
Query: 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-----L 341
A + E+ D + + ++ +L+ AG ++ +FS M V+ +
Sbjct: 188 VAGAR---EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 244
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG 392
H G + R L RA P E L +LSAC E G
Sbjct: 245 AHNGSFNESFLYFRELQRA-------GMSPNEVSLTGVLSACSQSGSFEFG 288
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 117/257 (45%), Gaps = 29/257 (11%)
Query: 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNA 151
+ +A +L+ P D FN ++ GY+ + H++ +F ++ K V +S A+
Sbjct: 55 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAF--- 111
Query: 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV---------------DLFDEMK 196
+ KA E F+ + + + G L S L++ +FDEM
Sbjct: 112 --VIKAVENFRSLRTGFQMHCQALKHG-LESHLFVGTTLIGMYGGCGCVEFARKVFDEMH 168
Query: 197 AGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256
+P+ + +V++AC G+ GAR ++ D L N + ++ Y K G +E
Sbjct: 169 ----QPNLVAWNAVITACFR-GNDVAGAR-EIF--DKMLVRNHTSWNVMLAGYIKAGELE 220
Query: 257 QSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316
+ +F + +D W+ MI+G+A +G + E+ + + ++++ G+LSACS
Sbjct: 221 SAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACS 280
Query: 317 HAGLVQEGCELFSRMEK 333
+G + G L +EK
Sbjct: 281 QSGSFEFGKILHGFVEK 297
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 222/358 (62%), Gaps = 5/358 (1%)
Query: 111 NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
N +I Y SAR +FD++P K++V+WNS++ AY +G++ A +F +M ++V+
Sbjct: 147 NTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVV 206
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDE-MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229
TW++M+ GY++ Y + +++FD+ M+ G+ K + +T+ SV+ ACA+LG+L G +H Y
Sbjct: 207 TWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRY 266
Query: 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK--DVFCWNAMILGLALHGYGY 287
D L T+LIDMYAKCGSI + VFY++ VK D WNA+I GLA HG+
Sbjct: 267 ILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIR 326
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347
+L+L +M +S + D+ITF+ LL+ACSH GLV+E F + K+ G K EHY CM
Sbjct: 327 ESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSL-KESGAEPKSEHYACM 385
Query: 348 VDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407
VD+L RA L+ A + I MP +PT S+LGALL+ C+ H +LE+ + V K + + +
Sbjct: 386 VDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIELQPH-N 444
Query: 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
DG + AN+YA Q+ A R M G+ K AG S+++++G+ H+F+A H
Sbjct: 445 DGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHRFIAHDKTHF 502
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 146/326 (44%), Gaps = 46/326 (14%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G+ D+ ++P L+K++ LS+ +G LH +K+G +++ L+ MYGS R
Sbjct: 99 MLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRD 158
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
A K+F++MP K+++ WNS+LDA+A G + A + D M +DV +++ MI GY +
Sbjct: 159 QASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKR 218
Query: 121 GKIHSA----------------------------------------RYIFDKVPAKDVVS 140
G+ + A RYI D V+
Sbjct: 219 GEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVIL 278
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVK--NVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198
SLI Y G + A +F + VK + + WN ++ G E + LF +M+
Sbjct: 279 QTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRES 338
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+ PD +T +L+AC++ G ++ ++G ++D+ ++ G ++ +
Sbjct: 339 KIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVKDA 398
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHG 284
+ + +K +LG L+G
Sbjct: 399 HDFISEMPIKPT----GSMLGALLNG 420
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 100/235 (42%), Gaps = 32/235 (13%)
Query: 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR 181
KIH+ + VS A +++G+++ A + K+ WN ++ G+
Sbjct: 26 KIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSN 85
Query: 182 SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN--- 238
S+ + + ++ +M + PD++T ++ + + L + + G +H +GL +
Sbjct: 86 SRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFI 145
Query: 239 ------------------------PHAT----TALIDMYAKCGSIEQSLEVFYKSQVKDV 270
PH +++D YAK G + + VF + +DV
Sbjct: 146 CNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDV 205
Query: 271 FCWNAMILGLALHGYGYAALKLLGE-MNDSCVKADDITFIGLLSACSHAGLVQEG 324
W++MI G G AL++ + M KA+++T + ++ AC+H G + G
Sbjct: 206 VTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRG 260
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/478 (34%), Positives = 255/478 (53%), Gaps = 18/478 (3%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G ++ S + + A L G +H + +K GF YV +AL+ MYG C
Sbjct: 199 MESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDC 258
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLM------PLKDVTSFNIMI 114
++ A +VF+KMP K ++AWNSM+ + + G +++++ M P + + +M
Sbjct: 259 LEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMA 318
Query: 115 SGYARI---GK-IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+R GK IH Y+ V D+ SLI Y GE A +F K
Sbjct: 319 CSRSRNLLHGKFIHG--YVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAE 376
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
+WN M++ Y+ + + V+++D+M + VKPD +T TSVL AC+ L +LE G +IH+
Sbjct: 377 SWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSI 436
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
+++ L ++ +AL+DMY+KCG+ +++ +F KDV W MI HG AL
Sbjct: 437 SESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREAL 496
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
EM +K D +T + +LSAC HAGL+ EG + FS+M +G+ +EHY CM+D+
Sbjct: 497 YQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDI 556
Query: 351 LGRARLLDRAIELIEAMPFEPTES--ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408
LGRA L A E+I+ P E +++ +L L SAC +H + +GDR+A+++ NY D
Sbjct: 557 LGRAGRLLEAYEIIQQTP-ETSDNAELLSTLFSACCLHLEHSLGDRIARLLV--ENYPDD 613
Query: 409 GE-LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
M+ NLYAS W+ A R R M + G+ K G S IE++ F A HL
Sbjct: 614 ASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHL 671
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 175/340 (51%), Gaps = 13/340 (3%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
D+++FP ++KA G L +G M+H +K+G+ V V ++L+ MY +++ +V
Sbjct: 105 PDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQV 164
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKI 123
F++MPE+D+ +WN+++ F G+ + A++L M + S + IS +R+ +
Sbjct: 165 FDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWL 224
Query: 124 HSARYIFDKVPAK----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179
+ I K K D ++L+ Y +E A E+F+KM K+++ WN+M+ GY
Sbjct: 225 ERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGY 284
Query: 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP 239
+ V++ + M +P T+TS+L AC+ +L G IH Y + + ++
Sbjct: 285 VAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADI 344
Query: 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299
+ +LID+Y KCG + VF K+Q WN MI G + A+++ +M
Sbjct: 345 YVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSV 404
Query: 300 CVKADDITFIGLLSACSHAGLVQEGCELF-----SRMEKD 334
VK D +TF +L ACS +++G ++ SR+E D
Sbjct: 405 GVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETD 444
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 107/460 (23%), Positives = 196/460 (42%), Gaps = 57/460 (12%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP-EKDIIAWNSMLDAFASC 89
++H + + G V + +L+ +Y + + A VFE D+ WNS++ ++
Sbjct: 25 LVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKN 84
Query: 90 GQMDHAMKLIDLM-----PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK----DVVS 140
+++ + + D +F +I Y +G+ R I V DVV
Sbjct: 85 SMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVV 144
Query: 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200
+SL+ Y E + ++F +M ++V +WNT+++ + +S + ++LF M++
Sbjct: 145 ASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGF 204
Query: 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260
+P+ +++T +SAC+ L LE G IH G + + +AL+DMY KC +E + E
Sbjct: 205 EPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVARE 264
Query: 261 VFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
VF K K + WN+MI G G + +++L M + T +L ACS +
Sbjct: 265 VFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRN 324
Query: 321 VQEG-------------------CEL----------------FSRMEKDFGVTRKLEHYG 345
+ G C L FS+ +KD E +
Sbjct: 325 LLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVA-----ESWN 379
Query: 346 CMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAK 402
M+ +A+E+ + M +P ++L AC LE G ++ +
Sbjct: 380 VMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSI--S 437
Query: 403 SNYLSDGELMMFA--NLYASCGQWEEANRWRNMMNDTGIV 440
+ L EL++ A ++Y+ CG +EA R N + +V
Sbjct: 438 ESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVV 477
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 271 bits (693), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 158/475 (33%), Positives = 252/475 (53%), Gaps = 13/475 (2%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M G D +SFP +LK+ LS G LH K G +V TAL+ MY
Sbjct: 44 MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGL 103
Query: 61 IDDAFKVFEKMPEKDIIA--WNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118
+ DA KVFE+ P+ ++ +N+++ + + ++ A + M V+ ++ + G
Sbjct: 104 VADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLV 163
Query: 119 RIGKIHSARYIFDKVPAK--------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVI 170
+ + ++ + + +V NS I Y G +E +F +M VK +I
Sbjct: 164 PLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLI 223
Query: 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230
TWN +++GY ++ L +V++L+++MK+ V PD T+ SVLS+CA+LG+ + G +
Sbjct: 224 TWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLV 283
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
NG N + A I MYA+CG++ ++ VF VK + W AMI +HG G L
Sbjct: 284 ESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGL 343
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M ++ D F+ +LSACSH+GL +G ELF M++++ + EHY C+VDL
Sbjct: 344 MLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDL 403
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVCAKSNYLSDG 409
LGRA LD A+E IE+MP EP ++ GALL AC IH+++++ + AK++ + N + G
Sbjct: 404 LGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNI--G 461
Query: 410 ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+Y+ E R R MM + K G S +E G H FLAG H
Sbjct: 462 YYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSH 516
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 123/315 (39%), Gaps = 57/315 (18%)
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231
WN + L+ E + L+ M PD + +L +CA+L +G ++H + T
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF--CWNAMILGLALHGYGYAA 289
G + P TALI MY KCG + + +VF ++ C+NA+I G + A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 290 LKLLGEMNDSCVKADDITFIGLLSACS--------------------------------- 316
+ M ++ V D +T +GL+ C+
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200
Query: 317 --HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE---P 371
G V+ G LF M + L + ++ + L +EL E M P
Sbjct: 201 YMKCGSVEAGRRLFDEMP-----VKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCP 255
Query: 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSN------YLSDGELMMFANLYASCGQWE 425
L ++LS+C +IG V K+V +SN ++S+ + M YA CG
Sbjct: 256 DPFTLVSVLSSCAHLGAKKIGHEVGKLV--ESNGFVPNVFVSNASISM----YARCGNLA 309
Query: 426 EANRWRNMMNDTGIV 440
+A ++M +V
Sbjct: 310 KARAVFDIMPVKSLV 324
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 271 bits (693), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 216/354 (61%), Gaps = 2/354 (0%)
Query: 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITW 172
+I Y++ G+ AR +FD + K+ V+WN++I Y +G+++ A +MF KM +++I+W
Sbjct: 115 IIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISW 174
Query: 173 NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232
M+ G+++ E + F EM+ VKPDY+ + + L+AC NLG+L G +H Y
Sbjct: 175 TAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLS 234
Query: 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL 292
+N + +LID+Y +CG +E + +VFY + + V WN++I+G A +G + +L
Sbjct: 235 QDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVY 294
Query: 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352
+M + K D +TF G L+ACSH GLV+EG F M+ D+ ++ ++EHYGC+VDL
Sbjct: 295 FRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYS 354
Query: 353 RARLLDRAIELIEAMPFEPTESILGALLSACVIH-QDLEIGDRVAKMVCAKSNYLSDGEL 411
RA L+ A++L+++MP +P E ++G+LL+AC H ++ + +R+ K + N S
Sbjct: 355 RAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHL-TDLNVKSHSNY 413
Query: 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHL 465
++ +N+YA+ G+WE A++ R M G+ K G S IE++ H F+AG H+
Sbjct: 414 VILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHV 467
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 172/385 (44%), Gaps = 55/385 (14%)
Query: 5 GVHADNYSFPLLLKAAGILSS--SCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGSLRCI 61
GV ++ +F LL G +S +G +LHG K G HV V TA++ MY
Sbjct: 66 GVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRF 125
Query: 62 DDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121
A VF+ M +K+ + WN+M+D + GQ+D+A K+ D MP +D+ S+ MI+G+ + G
Sbjct: 126 KKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKG 185
Query: 122 KIHSA---------------------------------------RYIFDKVPAKDVVSWN 142
A RY+ + +V N
Sbjct: 186 YQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSN 245
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202
SLI Y G +E A ++F M + V++WN+++ G+ + E + F +M+ KP
Sbjct: 246 SLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKP 305
Query: 203 DYLTVTSVLSACANLGSLETGAR-IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
D +T T L+AC+++G +E G R + D ++ L+D+Y++ G +E +L++
Sbjct: 306 DAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKL 365
Query: 262 FYKSQVKDVFCWNAMILGLAL-----HGYGYA-ALKLLGEMNDSCVKADDITFIGLLSAC 315
+K N +++G L HG A +L+ + D VK+ I LS
Sbjct: 366 VQSMPMKP----NEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVI--LSNM 419
Query: 316 SHAGLVQEGCELFSRMEKDFGVTRK 340
A EG R K G+ ++
Sbjct: 420 YAADGKWEGASKMRRKMKGLGLKKQ 444
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 34/192 (17%)
Query: 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL--GSLETGA 224
+ ++W + + R+ E F +M V+P+++T ++LS C + GS G
Sbjct: 34 ETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGD 93
Query: 225 RIHVYATDNGLASNP-HATTALIDMYAK-------------------------------C 252
+H YA GL N TA+I MY+K
Sbjct: 94 LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRS 153
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
G ++ + ++F K +D+ W AMI G GY AL EM S VK D + I L
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 313 SACSHAGLVQEG 324
+AC++ G + G
Sbjct: 214 NACTNLGALSFG 225
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 110/266 (41%), Gaps = 45/266 (16%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
MQ GV D + L A L + GL +H + F +V V +L+ +Y C
Sbjct: 197 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGC 256
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISG 116
++ A +VF M ++ +++WNS++ FA+ G ++ M K D +F ++
Sbjct: 257 VEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTA 316
Query: 117 YARIGKIHSARYIF-----DKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ +G + F D + + + L+ Y+ AG +E A ++ + M
Sbjct: 317 CSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM------- 369
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG-SLETGARIHVYA 230
+KP+ + + S+L+AC+N G ++ R+ +
Sbjct: 370 ---------------------------PMKPNEVVIGSLLAACSNHGNNIVLAERLMKHL 402
Query: 231 TDNGLASNPHATTALIDMYAKCGSIE 256
TD + S+ + L +MYA G E
Sbjct: 403 TDLNVKSHSNYVI-LSNMYAADGKWE 427
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 252/482 (52%), Gaps = 59/482 (12%)
Query: 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDD------------AFKVFEKMPEKDIIA 78
++HG ++T V+V + LL + C+DD A+ +F ++ ++
Sbjct: 30 IIHGFLLRTHLISDVFVASRLLAL-----CVDDSTFNKPTNLLGYAYGIFSQIQNPNLFV 84
Query: 79 WNSMLDAFAS----------------------------------------CGQMDHAMKL 98
+N ++ F++ G+ H+ ++
Sbjct: 85 FNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHS-QI 143
Query: 99 IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAG 158
+ DV N ++ YA G I +A IF ++ +DVVSW S++ Y G +E A
Sbjct: 144 VRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAR 203
Query: 159 EMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218
EMF +M +N+ TW+ M+ GY ++ + + +DLF+ MK V + + SV+S+CA+LG
Sbjct: 204 EMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLG 263
Query: 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMIL 278
+LE G R + Y + + N TAL+DM+ +CG IE+++ VF D W+++I
Sbjct: 264 ALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIK 323
Query: 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338
GLA+HG+ + A+ +M D+TF +LSACSH GLV++G E++ M+KD G+
Sbjct: 324 GLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIE 383
Query: 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398
+LEHYGC+VD+LGRA L A I M +P ILGALL AC I+++ E+ +RV M
Sbjct: 384 PRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNM 443
Query: 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458
+ K G ++ +N+YA GQW++ R+MM + + K G S+IE++G +KF
Sbjct: 444 L-IKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFT 502
Query: 459 AG 460
G
Sbjct: 503 MG 504
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 151/315 (47%), Gaps = 44/315 (13%)
Query: 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKV 67
DN +FP L+KA+ + +G H Q ++ GF VYV+ +L+ MY + I A ++
Sbjct: 115 PDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRI 174
Query: 68 FEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSAR 127
F +M +D+++W SM+ + CG +++A ++ D MP +++ +++IMI+GYA+ A
Sbjct: 175 FGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAI 234
Query: 128 YIFDKVPAKDVVSWNSLILA---------------------------------------Y 148
+F+ + + VV+ +++++ +
Sbjct: 235 DLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMF 294
Query: 149 TNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208
G++EKA +F+ + + ++W++++ G + + F +M + P +T T
Sbjct: 295 WRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFT 354
Query: 209 SVLSACANLGSLETGARIHV-YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267
+VLSAC++ G +E G I+ D+G+ ++DM + G + ++ K V
Sbjct: 355 AVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHV 414
Query: 268 KDVFCWNAMILGLAL 282
K NA ILG L
Sbjct: 415 KP----NAPILGALL 425
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ GV A+ ++ + L + G + +K+ ++ + TAL+ M+
Sbjct: 240 MKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGD 299
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAM----KLIDLMPLKDVTSFNIMISG 116
I+ A VFE +PE D ++W+S++ A G AM ++I L + +F ++S
Sbjct: 300 IEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSA 359
Query: 117 YARIGKIHSARYIFDKVPAKDVVS-----WNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
+ G + I++ + + + ++ AG++ +A KM VK
Sbjct: 360 CSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAP 419
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD---YLTVTSVLSACA 215
+ G + EV + M VKP+ Y + S + ACA
Sbjct: 420 ILGALLGACKIYKNTEVAERVGNMLI-KVKPEHSGYYVLLSNIYACA 465
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 160/460 (34%), Positives = 238/460 (51%), Gaps = 66/460 (14%)
Query: 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVF 68
+++ +PL+LK+ LSS+ ++H K+GF +V VQTALL Y S
Sbjct: 125 NHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYAS----------- 173
Query: 69 EKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128
S + A +L D M ++V S+ M+SGYAR G I +A
Sbjct: 174 -------------------SVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVA 214
Query: 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188
+F+ +P +DV SWN+++ A T G L++E
Sbjct: 215 LFEDMPERDVPSWNAILAACTQNG-------------------------------LFLEA 243
Query: 189 VDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247
V LF M +++P+ +TV VLSACA G+L+ IH +A L+S+ + +L+D
Sbjct: 244 VSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVD 303
Query: 248 MYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM---NDSCVKAD 304
+Y KCG++E++ VF + K + WN+MI ALHG A+ + EM N + +K D
Sbjct: 304 LYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPD 363
Query: 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364
ITFIGLL+AC+H GLV +G F M FG+ ++EHYGC++DLLGRA D A+E++
Sbjct: 364 HITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVM 423
Query: 365 EAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424
M + E+I G+LL+AC IH L++ + K + A N + G + M ANLY G W
Sbjct: 424 STMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVAL-NPNNGGYVAMMANLYGEMGNW 482
Query: 425 EEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
EEA R R M+ K G S IE++ H+F + H
Sbjct: 483 EEARRARKMIKHQNAYKPPGWSRIEIDNEVHQFYSLDKSH 522
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 121/260 (46%), Gaps = 32/260 (12%)
Query: 119 RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEME--KAGEMFKKMLVKNVITWNTMV 176
R+ + AR+IFD+ + + +++ AY+++ + A F+ M+ ++V N +
Sbjct: 69 RLCNLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFI 128
Query: 177 -------TGYLRSQLYIEVV--DLFDEMKAGNVKPDYLTV-TSVLSACANLGSLETGARI 226
T YL S +V LF K+G Y+ V T++L + A+ S T AR
Sbjct: 129 YPLVLKSTPYLSSAFSTPLVHTHLF---KSGFHL--YVVVQTALLHSYASSVSHITLAR- 182
Query: 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286
D N + TA++ YA+ G I ++ +F +DV WNA++ +G
Sbjct: 183 --QLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLF 240
Query: 287 YAALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQ--EGCELFSR---MEKDFGVTRK 340
A+ L M N+ ++ +++T + +LSAC+ G +Q +G F+ + D V+
Sbjct: 241 LEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNS 300
Query: 341 LEHYGCMVDLLGRARLLDRA 360
L VDL G+ L+ A
Sbjct: 301 L------VDLYGKCGNLEEA 314
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 268 bits (685), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/446 (34%), Positives = 247/446 (55%), Gaps = 11/446 (2%)
Query: 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88
G+ +H +IK G ++V L+ +Y + D KVF++M +D+I+WNS++ A+
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYEL 325
Query: 89 CGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKVPAK-----DVV 139
Q A+ L M L D + + S +++G I + R + K D+
Sbjct: 326 NEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDIT 385
Query: 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA-G 198
N++++ Y G ++ A +F + +VI+WNT+++GY ++ E +++++ M+ G
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEG 445
Query: 199 NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQS 258
+ + T SVL AC+ G+L G ++H NGL + T+L DMY KCG +E +
Sbjct: 446 EIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDA 505
Query: 259 LEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318
L +FY+ + WN +I HG+G A+ L EM D VK D ITF+ LLSACSH+
Sbjct: 506 LSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHS 565
Query: 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA 378
GLV EG F M+ D+G+T L+HYGCMVD+ GRA L+ A++ I++M +P SI GA
Sbjct: 566 GLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGA 625
Query: 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438
LLSAC +H ++++G ++A + G ++ +N+YAS G+WE + R++ + G
Sbjct: 626 LLSACRVHGNVDLG-KIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKG 684
Query: 439 IVKTAGSSVIEVNGSYHKFLAGGIGH 464
+ KT G S +EV+ F G H
Sbjct: 685 LRKTPGWSSMEVDNKVEVFYTGNQTH 710
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 182/372 (48%), Gaps = 14/372 (3%)
Query: 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDA 64
G+ D +FP +LKA + G +H +K GF VYV +L+ +Y + + +A
Sbjct: 148 GLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNA 204
Query: 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIG--- 121
+F++MP +D+ +WN+M+ + G A+ L + + D + ++S G
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFN 264
Query: 122 ---KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTG 178
IHS Y ++ N LI Y G + ++F +M V+++I+WN+++
Sbjct: 265 RGVTIHS--YSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKA 322
Query: 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG-LAS 237
Y ++ + + LF EM+ ++PD LT+ S+ S + LG + + + G
Sbjct: 323 YELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLE 382
Query: 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297
+ A++ MYAK G ++ + VF DV WN +I G A +G+ A+++ M
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIME 442
Query: 298 DSC-VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356
+ + A+ T++ +L ACS AG +++G +L R+ K+ G+ + + D+ G+
Sbjct: 443 EEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGR 501
Query: 357 LDRAIELIEAMP 368
L+ A+ L +P
Sbjct: 502 LEDALSLFYQIP 513
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 14/299 (4%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91
LH + + + +V + L+ +Y L + A F+ + +D+ AWN M+ + G
Sbjct: 73 LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN 132
Query: 92 MDHAMKLIDLMPL-----KDVTSFNIMISGYARI---GKIHSARYIFDKVPAKDVVSWNS 143
++ L L D +F ++ + KIH F + DV S
Sbjct: 133 SSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFM--WDVYVAAS 190
Query: 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203
LI Y+ + A +F +M V+++ +WN M++GY +S E + L + ++A D
Sbjct: 191 LIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA----MD 246
Query: 204 YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263
+TV S+LSAC G G IH Y+ +GL S + LID+YA+ G + +VF
Sbjct: 247 SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFD 306
Query: 264 KSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322
+ V+D+ WN++I L+ A+ L EM S ++ D +T I L S S G ++
Sbjct: 307 RMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIR 365
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 8/179 (4%)
Query: 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
L D K GN + V ++ C NL S + +H + N + L+++Y
Sbjct: 41 LQDCWKNGNESKEIDDVHTLFRYCTNLQSAKC---LHARLVVSKQIQNVCISAKLVNLYC 97
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG-EMNDSCVKADDITFI 309
G++ + F Q +DV+ WN MI G G ++ M S + D TF
Sbjct: 98 YLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFP 157
Query: 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368
+L AC V +G ++ K FG + ++ L R + + A L + MP
Sbjct: 158 SVLKACR---TVIDGNKIHCLALK-FGFMWDVYVAASLIHLYSRYKAVGNARILFDEMP 212
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 268 bits (684), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 149/474 (31%), Positives = 242/474 (51%), Gaps = 41/474 (8%)
Query: 32 LHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAF----- 86
LH +K G + L+ +YG A +VF++MP +D IAW S+L A
Sbjct: 25 LHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL 84
Query: 87 -------------------------------ASCGQMDHAMKLIDLMPLKDVTSFNIMIS 115
A+ G +DH ++ + + + ++ S
Sbjct: 85 SGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKS 144
Query: 116 G----YARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
YA+ G ++SA+ +FD + K+ +SW +++ Y +G E+A E+F+ + VKN+ +
Sbjct: 145 SLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYS 204
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP-DYLTVTSVLSACANLGSLETGARIHVYA 230
W +++G+++S +E +F EM+ V D L ++S++ ACANL + G ++H
Sbjct: 205 WTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLV 264
Query: 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290
G S + ALIDMYAKC + + ++F + + +DV W ++I+G+A HG AL
Sbjct: 265 IALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKAL 324
Query: 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350
L +M VK +++TF+GL+ ACSH G V++G ELF M KD+G+ L+HY C++DL
Sbjct: 325 ALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDL 384
Query: 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410
LGR+ LLD A LI MPF P E ALLSAC ++G R+A + +
Sbjct: 385 LGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPST 444
Query: 411 LMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGH 464
++ +N+YAS W + + R + + + K G S +EV F AG H
Sbjct: 445 YILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSH 498
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/378 (21%), Positives = 170/378 (44%), Gaps = 47/378 (12%)
Query: 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65
+ D++ F L+KA L S G +H I + + V+++L+ MY ++ A
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 160
Query: 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHS 125
VF+ + K+ I+W +M+ +A G+ + A++L ++P+K++ S+ +ISG+ + GK
Sbjct: 161 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLE 220
Query: 126 ARYIFDKVPAKDVVSWNSLILA-------------------------------------- 147
A +F ++ + V + L+L+
Sbjct: 221 AFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALI 280
Query: 148 --YTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL 205
Y ++ A ++F +M ++V++W +++ G + + + L+D+M + VKP+ +
Sbjct: 281 DMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEV 340
Query: 206 TVTSVLSACANLGSLETGARIHVYAT-DNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264
T ++ AC+++G +E G + T D G+ + T L+D+ + G ++++ + +
Sbjct: 341 TFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHT 400
Query: 265 SQV-KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI---GLLSACSHAGL 320
D W A++ G G +++ + S D T+I + ++ S G
Sbjct: 401 MPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGK 460
Query: 321 VQEGCELFSRME--KDFG 336
V E ME KD G
Sbjct: 461 VSEARRKLGEMEVRKDPG 478
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P YL L CA +L T +H + G+ L+++Y KCG+ +L+V
Sbjct: 4 PHYL---HQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQV 60
Query: 262 FYKSQVKDVFCWNAMILGLALHGY-GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320
F + +D W +++ L G + S ++ DD F L+ AC++ G
Sbjct: 61 FDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGS 120
Query: 321 VQEG 324
+ G
Sbjct: 121 IDHG 124
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 163/484 (33%), Positives = 268/484 (55%), Gaps = 24/484 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M++L ++ SFP +KA L G H Q G+ ++V +AL+ MY +
Sbjct: 67 MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL----------------IDLMPL 104
++DA KVF+++P+++I++W SM+ + G A+ L +D M L
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGL 186
Query: 105 KDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE--MEKAGEMFK 162
V S + IHS ++ + + V N+L+ AY GE + A ++F
Sbjct: 187 VSVISACSRVPAKGLTESIHS--FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFD 244
Query: 163 KMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM-KAGNVKPDYLTVTSVLSACANLGSLE 221
+++ K+ +++N++++ Y +S + E ++F + K V + +T+++VL A ++ G+L
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALR 304
Query: 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLA 281
G IH GL + T++IDMY KCG +E + + F + + K+V W AMI G
Sbjct: 305 IGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYG 364
Query: 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341
+HG+ AL+L M DS V+ + ITF+ +L+ACSHAGL EG F+ M+ FGV L
Sbjct: 365 MHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGL 424
Query: 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGD-RVAKMVC 400
EHYGCMVDLLGRA L +A +LI+ M +P I +LL+AC IH+++E+ + VA++
Sbjct: 425 EHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFE 484
Query: 401 AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAG 460
S+ G M+ +++YA G+W++ R R +M + G+VK G S++E+NG H FL G
Sbjct: 485 LDSSNC--GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIG 542
Query: 461 GIGH 464
H
Sbjct: 543 DEEH 546
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 127/278 (45%), Gaps = 22/278 (7%)
Query: 67 VFEKMPEK-DIIAWNSMLDAFASCGQMDHA------MKLIDLMPLKDVTSFNIMISGYAR 119
+F + +K D+ +WNS++ A G A M+ + L P + +SF I +
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTR--SSFPCAIKACSS 88
Query: 120 IGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTM 175
+ I S + + D+ ++LI+ Y+ G++E A ++F ++ +N+++W +M
Sbjct: 89 LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148
Query: 176 VTGYLRSQLYIEVVDLFDEMKAGNVKP------DYLTVTSVLSACANLGSLETGARIHVY 229
+ GY + ++ V LF ++ D + + SV+SAC+ + + IH +
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208
Query: 230 ATDNGLASNPHATTALIDMYAKCGS--IEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
G L+D YAK G + + ++F + KD +N+++ A G
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268
Query: 288 AALKLLGEM-NDSCVKADDITFIGLLSACSHAGLVQEG 324
A ++ + + V + IT +L A SH+G ++ G
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG 306
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Query: 143 SLILAYTNAGEMEKAGEMFKKMLVK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201
S +L E + +F + + K +V +WN+++ RS E + F M+ ++
Sbjct: 14 SRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLY 73
Query: 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261
P + + AC++L + +G + H A G S+ ++ALI MY+ CG +E + +V
Sbjct: 74 PTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKV 133
Query: 262 FYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEM------NDSCVKADDITFIGLLSAC 315
F + +++ W +MI G L+G A+ L ++ +D + D + + ++SAC
Sbjct: 134 FDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193
Query: 316 SH 317
S
Sbjct: 194 SR 195
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 246/449 (54%), Gaps = 17/449 (3%)
Query: 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72
FP L +A + G +HG + GF + V+T +L +Y +CI A +VF+
Sbjct: 212 FPALGRAGALRE----GKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDF 267
Query: 73 EKDIIAWNSMLDAFAS------CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126
+K+ + W++M+ + G++ M + D + + + +++ G AR G +
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGG 327
Query: 127 R----YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182
R Y D+ N++I Y G + A F ++ +K+VI++N+++TG + +
Sbjct: 328 RCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVN 387
Query: 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT 242
E LF EM+ ++PD T+ VL+AC++L +L G+ H Y +G A N
Sbjct: 388 CRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSIC 447
Query: 243 TALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302
AL+DMY KCG ++ + VF +D+ WN M+ G +HG G AL L M ++ V
Sbjct: 448 NALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVN 507
Query: 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGCMVDLLGRARLLDRAI 361
D++T + +LSACSH+GLV EG +LF+ M + DF V +++HY CM DLL RA LD A
Sbjct: 508 PDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAY 567
Query: 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421
+ + MPFEP +LG LLSAC +++ E+G+ V+K + +S + L++ +N Y++
Sbjct: 568 DFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKM--QSLGETTESLVLLSNTYSAA 625
Query: 422 GQWEEANRWRNMMNDTGIVKTAGSSVIEV 450
+WE+A R R + G++KT G S ++V
Sbjct: 626 ERWEDAARIRMIQKKRGLLKTPGYSWVDV 654
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 160/337 (47%), Gaps = 15/337 (4%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M GV Y++P +LKA L + G ++H + F +YV TAL+ Y
Sbjct: 94 MLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGE 153
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFA-SCGQMDHAMKLIDLMPL----KDVTSFNIMIS 115
++ A KVF++MP++D++AWN+M+ F+ C D +D+ + ++++ M
Sbjct: 154 LEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFP 213
Query: 116 GYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT 171
R G + + + + D+V ++ Y + + A +F KN +T
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVT 273
Query: 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGN----VKPDYLTVTSVLSACANLGSLETGARIH 227
W+ M+ GY+ +++ E ++F +M + V P + + +L CA G L G +H
Sbjct: 274 WSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTP--VAIGLILMGCARFGDLSGGRCVH 331
Query: 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287
YA G + +I YAK GS+ + F + +KDV +N++I G ++
Sbjct: 332 CYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPE 391
Query: 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324
+ +L EM S ++ D T +G+L+ACSH + G
Sbjct: 392 ESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHG 428
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149
GQ+ H L + L T + YA ++ AR++FD++P +
Sbjct: 18 GQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRI----------- 66
Query: 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209
N I W+ M+ Y + + +DL+ +M V+P T
Sbjct: 67 ------------------NPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPF 108
Query: 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269
VL ACA L +++ G IH + + A++ + TAL+D YAKCG +E +++VF + +D
Sbjct: 109 VLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRD 168
Query: 270 VFCWNAMILGLALHGYGYAALKLLGEMND-SCVKADDITFIGLLSACSHAGLVQEG 324
+ WNAMI G +LH + L +M + + T +G+ A AG ++EG
Sbjct: 169 MVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG 224
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 145/318 (45%), Gaps = 30/318 (9%)
Query: 28 IGLMLHGQTIKTGFC-GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI--IAWNSMLD 84
+G ++H +K V L ++Y S ++ A VF+++P I IAW+ M+
Sbjct: 17 LGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIR 76
Query: 85 AFASCGQMDHAMKLIDL---------MPLKDVTSFNIMISGYARIGKIHSARYIFDKVP- 134
A+AS D A K +DL P K ++ ++ A + I + I V
Sbjct: 77 AYAS---NDFAEKALDLYYKMLNSGVRPTK--YTYPFVLKACAGLRAIDDGKLIHSHVNC 131
Query: 135 ---AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL 191
A D+ +L+ Y GE+E A ++F +M ++++ WN M++G+ +V+ L
Sbjct: 132 SDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGL 191
Query: 192 FDEMKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250
F +M+ + P+ T+ + A G+L G +H Y T G +++ T ++D+YA
Sbjct: 192 FLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYA 251
Query: 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310
K I + VF K+ W+AMI G + +K GE+ + D++ +
Sbjct: 252 KSKCIIYARRVFDLDFKKNEVTWSAMIGGYVEN----EMIKEAGEVFFQMLVNDNVAMVT 307
Query: 311 LLSACSHAGLVQEGCELF 328
++ GL+ GC F
Sbjct: 308 PVA----IGLILMGCARF 321
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 36/232 (15%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60
M+ G+ D + +L A L++ G HG + G+ + + AL+ MY
Sbjct: 400 MRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGK 459
Query: 61 IDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120
+D A +VF+ M ++DI++WN+ML F G A+ L + M V
Sbjct: 460 LDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNP----------- 508
Query: 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM------LVKNVITWNT 174
D V+ +++ A +++G +++ ++F M ++ + +N
Sbjct: 509 ----------------DEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNC 552
Query: 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226
M R+ E D ++M +PD + ++LSAC + E G +
Sbjct: 553 MTDLLARAGYLDEAYDFVNKMP---FEPDIRVLGTLLSACWTYKNAELGNEV 601
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/485 (33%), Positives = 251/485 (51%), Gaps = 40/485 (8%)
Query: 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG--FCGHVYVQ---------T 49
+Q G+ AD+ ++ L+K CI + + G C H+Y
Sbjct: 52 LQSHGLWADSATYSELIKC-------CIS----NRAVHEGNLICRHLYFNGHRPMMFLVN 100
Query: 50 ALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTS 109
L+ MY ++DA ++F++MP++++I+W +M+ A++ C A++L+ LM L+D
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLM-LRDNVR 159
Query: 110 FNIMI--------SGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161
N+ +G + + +H I + DV ++LI + GE E A +F
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCG--IIKEGLESDVFVRSALIDVFAKLGEPEDALSVF 217
Query: 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221
+M+ + I WN+++ G+ ++ ++LF MK + T+TSVL AC L LE
Sbjct: 218 DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLE 277
Query: 222 TG--ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG 279
G A +H+ D L N AL+DMY KCGS+E +L VF + + +DV W+ MI G
Sbjct: 278 LGMQAHVHIVKYDQDLILN----NALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG 333
Query: 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339
LA +GY ALKL M S K + IT +G+L ACSHAGL+++G F M+K +G+
Sbjct: 334 LAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDP 393
Query: 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMV 399
EHYGCM+DLLG+A LD A++L+ M EP LL AC + +++ + + AK V
Sbjct: 394 VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKV 453
Query: 400 CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459
A G + +N+YA+ +W+ R M D GI K G S IEVN H F+
Sbjct: 454 IALDPE-DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFII 512
Query: 460 GGIGH 464
G H
Sbjct: 513 GDNSH 517
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 116/281 (41%), Gaps = 38/281 (13%)
Query: 193 DEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252
D +++ + D T + ++ C + ++ G I + NG LI+MY K
Sbjct: 50 DSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKF 109
Query: 253 GSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312
+ + ++F + ++V W MI + AL+LL M V+ + T+ +L
Sbjct: 110 NLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVL 169
Query: 313 SACS--------HAGLVQEGCE-----------LFSRMEK--------DFGVTRKLEHYG 345
+C+ H G+++EG E +F+++ + D VT +
Sbjct: 170 RSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWN 229
Query: 346 CMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSACVIHQDLEIGDRVAKMVCAK 402
++ + D A+EL + M F ++ L ++L AC LE+G + +
Sbjct: 230 SIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK- 288
Query: 403 SNYLSDGELMM---FANLYASCGQWEEANRWRNMMNDTGIV 440
D +L++ ++Y CG E+A R N M + ++
Sbjct: 289 ----YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVI 325
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,983,235
Number of Sequences: 539616
Number of extensions: 6917475
Number of successful extensions: 21732
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 14285
Number of HSP's gapped (non-prelim): 2058
length of query: 471
length of database: 191,569,459
effective HSP length: 121
effective length of query: 350
effective length of database: 126,275,923
effective search space: 44196573050
effective search space used: 44196573050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)