Query 012108
Match_columns 471
No_of_seqs 577 out of 2698
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 23:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.2E-73 2.7E-78 563.3 52.2 462 5-467 118-587 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2.5E-71 5.3E-76 559.7 51.2 464 1-467 279-750 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 4.2E-66 9E-71 521.8 45.7 442 1-446 178-628 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1E-62 2.2E-67 488.4 50.5 444 6-450 366-854 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.4E-63 1.6E-67 489.4 48.7 434 8-444 435-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.5E-56 3.3E-61 442.0 43.5 423 6-440 83-526 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-30 3.3E-35 269.1 47.9 418 13-439 434-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-29 2.5E-34 262.4 48.3 422 6-435 461-898 (899)
9 PRK11447 cellulose synthase su 99.9 1.9E-22 4.1E-27 209.7 47.4 409 17-436 276-739 (1157)
10 PRK11447 cellulose synthase su 99.9 4.6E-22 9.9E-27 206.8 47.5 315 14-333 116-523 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 4.5E-24 9.7E-29 189.9 27.2 364 75-445 115-493 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-21 3.5E-26 190.6 39.5 418 13-439 130-573 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 2.4E-22 5.2E-27 179.0 27.8 374 44-426 115-508 (966)
14 PRK11788 tetratricopeptide rep 99.9 8.6E-22 1.9E-26 183.1 31.4 293 147-444 44-354 (389)
15 PRK11788 tetratricopeptide rep 99.9 8.1E-21 1.7E-25 176.6 32.2 290 116-409 44-354 (389)
16 PRK15174 Vi polysaccharide exp 99.9 9.3E-20 2E-24 177.6 38.6 344 57-405 17-384 (656)
17 PRK15174 Vi polysaccharide exp 99.9 1E-19 2.2E-24 177.4 38.9 349 86-441 15-385 (656)
18 PRK10049 pgaA outer membrane p 99.9 3.5E-19 7.5E-24 177.4 41.4 190 250-440 248-459 (765)
19 PRK10049 pgaA outer membrane p 99.9 8.3E-19 1.8E-23 174.7 43.5 397 9-411 14-464 (765)
20 PRK09782 bacteriophage N4 rece 99.9 3.2E-18 6.9E-23 170.8 47.1 422 10-441 181-710 (987)
21 PRK09782 bacteriophage N4 rece 99.9 9.3E-18 2E-22 167.5 43.2 199 238-442 476-677 (987)
22 PRK14574 hmsH outer membrane p 99.9 3.2E-17 6.9E-22 160.4 45.7 421 19-442 43-518 (822)
23 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-17 3.2E-22 162.8 39.8 393 5-405 155-574 (615)
24 KOG2002 TPR-containing nuclear 99.8 2.5E-17 5.4E-22 154.8 33.9 433 7-443 267-751 (1018)
25 PRK14574 hmsH outer membrane p 99.8 1.5E-15 3.2E-20 148.9 41.9 386 52-440 41-482 (822)
26 KOG0495 HAT repeat protein [RN 99.8 7.4E-14 1.6E-18 126.3 41.7 423 16-450 412-891 (913)
27 KOG4422 Uncharacterized conser 99.8 2.9E-14 6.3E-19 122.6 35.8 413 12-441 118-594 (625)
28 KOG2003 TPR repeat-containing 99.8 2.7E-16 5.8E-21 136.0 23.0 404 15-423 206-709 (840)
29 KOG2002 TPR-containing nuclear 99.8 1.6E-14 3.5E-19 136.2 35.1 408 22-438 176-676 (1018)
30 PF13429 TPR_15: Tetratricopep 99.7 1.6E-17 3.4E-22 146.4 11.6 257 174-435 13-275 (280)
31 KOG0547 Translocase of outer m 99.7 4.8E-14 1.1E-18 123.3 31.3 214 215-435 337-564 (606)
32 KOG1155 Anaphase-promoting com 99.7 1.1E-13 2.3E-18 120.4 32.7 327 106-436 163-494 (559)
33 KOG2003 TPR repeat-containing 99.7 6E-15 1.3E-19 127.7 24.5 391 44-439 200-691 (840)
34 KOG0495 HAT repeat protein [RN 99.7 1E-12 2.2E-17 119.1 39.3 399 27-438 363-783 (913)
35 KOG1915 Cell cycle control pro 99.7 2.8E-13 6.1E-18 118.1 34.2 388 44-438 72-501 (677)
36 KOG1173 Anaphase-promoting com 99.7 4.2E-13 9.1E-18 119.6 35.4 422 12-441 18-522 (611)
37 PRK10747 putative protoheme IX 99.7 3.7E-13 8.1E-18 124.1 33.0 125 304-435 262-388 (398)
38 KOG2076 RNA polymerase III tra 99.7 1.1E-12 2.4E-17 123.2 36.0 345 12-359 141-544 (895)
39 KOG4318 Bicoid mRNA stability 99.7 4.5E-14 9.8E-19 131.8 26.3 425 1-441 16-598 (1088)
40 KOG2076 RNA polymerase III tra 99.7 5.5E-13 1.2E-17 125.2 33.4 315 117-435 149-510 (895)
41 PRK10747 putative protoheme IX 99.7 2.2E-13 4.8E-18 125.6 30.9 278 119-403 96-391 (398)
42 KOG1915 Cell cycle control pro 99.7 1E-11 2.3E-16 108.5 37.0 409 18-435 81-583 (677)
43 TIGR00540 hemY_coli hemY prote 99.7 1E-12 2.2E-17 121.9 32.8 115 119-234 96-217 (409)
44 TIGR00540 hemY_coli hemY prote 99.7 9E-13 1.9E-17 122.3 31.8 284 148-436 94-398 (409)
45 PF13429 TPR_15: Tetratricopep 99.6 1E-15 2.2E-20 135.0 11.3 247 15-264 13-273 (280)
46 KOG4422 Uncharacterized conser 99.6 1.1E-11 2.4E-16 107.0 31.9 344 6-367 203-587 (625)
47 KOG1126 DNA-binding cell divis 99.6 1.8E-13 3.9E-18 124.5 22.2 267 27-297 336-618 (638)
48 KOG1126 DNA-binding cell divis 99.6 3.1E-13 6.6E-18 123.0 22.8 281 153-443 334-626 (638)
49 KOG2376 Signal recognition par 99.6 1.7E-10 3.6E-15 103.9 37.7 413 14-434 16-517 (652)
50 COG2956 Predicted N-acetylgluc 99.6 4.6E-12 1E-16 105.4 25.5 285 89-401 48-346 (389)
51 COG3071 HemY Uncharacterized e 99.6 3.2E-11 6.9E-16 103.6 30.8 127 269-401 262-389 (400)
52 KOG1155 Anaphase-promoting com 99.6 1.5E-10 3.3E-15 101.2 34.2 354 75-437 163-536 (559)
53 COG3071 HemY Uncharacterized e 99.6 3E-11 6.5E-16 103.7 28.9 282 150-440 96-393 (400)
54 COG2956 Predicted N-acetylgluc 99.5 1.7E-11 3.6E-16 102.1 25.5 264 58-352 48-326 (389)
55 KOG2047 mRNA splicing factor [ 99.5 5.3E-09 1.1E-13 95.4 38.9 411 11-429 139-715 (835)
56 KOG3785 Uncharacterized conser 99.5 1.9E-09 4.2E-14 91.2 33.7 426 17-454 29-504 (557)
57 TIGR02521 type_IV_pilW type IV 99.5 1.7E-11 3.6E-16 105.4 22.6 197 239-437 31-232 (234)
58 KOG0547 Translocase of outer m 99.5 1.6E-09 3.4E-14 95.6 32.3 382 13-403 118-567 (606)
59 KOG1173 Anaphase-promoting com 99.5 1.8E-09 3.8E-14 97.0 33.0 407 6-418 45-533 (611)
60 PRK12370 invasion protein regu 99.4 8.1E-11 1.8E-15 113.5 25.4 260 168-438 255-536 (553)
61 KOG4162 Predicted calmodulin-b 99.4 3.2E-09 6.8E-14 98.9 33.7 398 36-440 314-786 (799)
62 TIGR02521 type_IV_pilW type IV 99.4 1.9E-10 4.2E-15 98.8 23.2 198 169-401 31-231 (234)
63 KOG1129 TPR repeat-containing 99.4 3.8E-11 8.3E-16 100.2 17.6 237 208-450 227-471 (478)
64 KOG1129 TPR repeat-containing 99.4 7.3E-11 1.6E-15 98.5 19.0 230 171-405 225-461 (478)
65 PRK12370 invasion protein regu 99.4 2.2E-10 4.7E-15 110.6 24.1 243 152-404 275-537 (553)
66 KOG1840 Kinesin light chain [C 99.4 3.5E-10 7.7E-15 104.2 24.0 241 170-435 200-477 (508)
67 KOG1174 Anaphase-promoting com 99.4 1.2E-08 2.6E-13 88.2 31.0 268 165-440 228-503 (564)
68 KOG4340 Uncharacterized conser 99.3 3.4E-09 7.5E-14 87.6 25.5 414 1-436 1-442 (459)
69 KOG1156 N-terminal acetyltrans 99.3 4.8E-08 1E-12 89.5 34.6 417 14-439 12-470 (700)
70 KOG1174 Anaphase-promoting com 99.3 2.5E-08 5.3E-13 86.4 31.0 272 134-412 228-509 (564)
71 KOG1840 Kinesin light chain [C 99.3 1.8E-09 3.9E-14 99.6 25.9 239 139-401 200-478 (508)
72 PF13041 PPR_2: PPR repeat fam 99.3 5.3E-12 1.2E-16 78.1 6.6 50 167-216 1-50 (50)
73 KOG3785 Uncharacterized conser 99.3 4.4E-08 9.4E-13 83.2 29.9 375 19-406 66-494 (557)
74 PF12569 NARP1: NMDA receptor- 99.3 3.5E-08 7.6E-13 92.3 32.5 410 16-433 10-516 (517)
75 PF12569 NARP1: NMDA receptor- 99.3 7.6E-09 1.7E-13 96.7 28.1 128 307-436 196-333 (517)
76 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.9E-16 76.3 6.6 50 268-317 1-50 (50)
77 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-09 3.1E-14 96.1 21.5 217 181-405 38-268 (296)
78 KOG2047 mRNA splicing factor [ 99.3 9.9E-08 2.2E-12 87.3 32.7 389 46-439 103-581 (835)
79 KOG2376 Signal recognition par 99.3 1.3E-07 2.9E-12 85.7 32.6 379 52-440 19-490 (652)
80 PRK11189 lipoprotein NlpI; Pro 99.3 8.9E-09 1.9E-13 91.0 25.5 212 219-440 41-268 (296)
81 COG3063 PilF Tfp pilus assembl 99.2 4.9E-10 1.1E-14 89.3 15.1 197 240-438 36-237 (250)
82 KOG4318 Bicoid mRNA stability 99.2 3.9E-10 8.4E-15 106.2 16.9 245 190-449 11-277 (1088)
83 KOG3617 WD40 and TPR repeat-co 99.2 8.9E-08 1.9E-12 90.0 30.5 276 22-330 812-1170(1416)
84 PF04733 Coatomer_E: Coatomer 99.2 2.8E-10 6E-15 99.0 13.6 249 146-405 9-268 (290)
85 KOG4162 Predicted calmodulin-b 99.2 1.6E-07 3.5E-12 87.9 31.7 395 5-405 318-786 (799)
86 COG3063 PilF Tfp pilus assembl 99.2 1.4E-08 3E-13 81.2 21.1 195 208-405 39-239 (250)
87 KOG1156 N-terminal acetyltrans 99.2 6.3E-07 1.4E-11 82.4 33.9 408 19-434 50-508 (700)
88 KOG0624 dsRNA-activated protei 99.1 1.1E-07 2.3E-12 80.6 24.8 307 80-410 42-377 (504)
89 KOG3617 WD40 and TPR repeat-co 99.1 7E-08 1.5E-12 90.7 26.1 229 11-265 727-993 (1416)
90 KOG3616 Selective LIM binding 99.1 1.8E-07 3.9E-12 87.1 27.8 282 82-396 621-905 (1636)
91 PF04733 Coatomer_E: Coatomer 99.1 6E-09 1.3E-13 90.7 17.6 248 177-440 9-268 (290)
92 KOG3616 Selective LIM binding 99.1 5.4E-07 1.2E-11 84.0 29.0 352 51-439 621-1026(1636)
93 cd05804 StaR_like StaR_like; a 99.1 1.1E-06 2.4E-11 80.8 31.3 258 178-438 52-337 (355)
94 PRK04841 transcriptional regul 99.1 1.6E-06 3.5E-11 90.2 36.0 353 86-438 351-761 (903)
95 KOG0548 Molecular co-chaperone 99.1 4.1E-07 8.9E-12 81.8 26.3 389 18-420 10-472 (539)
96 KOG0624 dsRNA-activated protei 99.1 4E-07 8.6E-12 77.2 24.4 312 44-372 37-373 (504)
97 KOG4340 Uncharacterized conser 99.0 2.4E-07 5.2E-12 77.0 22.2 303 110-433 13-335 (459)
98 cd05804 StaR_like StaR_like; a 99.0 2.1E-06 4.6E-11 78.9 31.1 291 109-403 8-337 (355)
99 KOG1914 mRNA cleavage and poly 99.0 9.5E-06 2.1E-10 73.3 32.8 392 42-437 17-501 (656)
100 KOG0985 Vesicle coat protein c 99.0 4.6E-06 1E-10 80.6 32.5 372 16-434 844-1246(1666)
101 KOG1125 TPR repeat-containing 99.0 3.2E-08 6.9E-13 89.5 16.8 217 213-436 294-526 (579)
102 KOG0985 Vesicle coat protein c 98.9 1.4E-05 3.1E-10 77.4 33.3 365 31-428 968-1374(1666)
103 KOG1070 rRNA processing protei 98.9 1.2E-07 2.7E-12 94.0 20.3 203 236-443 1455-1669(1710)
104 PRK04841 transcriptional regul 98.9 6.2E-06 1.3E-10 85.9 34.3 351 53-405 349-763 (903)
105 KOG1125 TPR repeat-containing 98.9 7.8E-08 1.7E-12 87.1 17.0 250 177-430 293-564 (579)
106 PRK10370 formate-dependent nit 98.9 2E-07 4.3E-12 76.7 18.0 150 278-442 24-178 (198)
107 KOG1127 TPR repeat-containing 98.9 6E-06 1.3E-10 79.8 29.0 415 12-434 494-993 (1238)
108 TIGR03302 OM_YfiO outer membra 98.9 1.9E-07 4.2E-12 80.1 17.9 184 236-438 30-233 (235)
109 KOG1127 TPR repeat-containing 98.8 2.8E-06 6E-11 82.1 24.2 389 26-433 474-909 (1238)
110 PRK15359 type III secretion sy 98.8 1.3E-07 2.9E-12 73.5 12.6 103 310-415 29-133 (144)
111 KOG1914 mRNA cleavage and poly 98.8 0.00013 2.8E-09 66.3 35.1 414 7-425 17-527 (656)
112 PLN02789 farnesyltranstransfer 98.8 7.3E-06 1.6E-10 72.6 23.8 229 171-435 39-300 (320)
113 COG5010 TadD Flp pilus assembl 98.8 2E-06 4.3E-11 70.6 18.4 155 274-432 70-226 (257)
114 PF12854 PPR_1: PPR repeat 98.8 8.2E-09 1.8E-13 57.1 3.0 33 4-36 1-33 (34)
115 KOG3081 Vesicle coat complex C 98.7 5.5E-06 1.2E-10 68.1 19.4 107 315-426 147-259 (299)
116 KOG1128 Uncharacterized conser 98.7 2.5E-06 5.4E-11 79.7 19.7 210 212-440 406-619 (777)
117 PRK15359 type III secretion sy 98.7 1E-06 2.2E-11 68.6 14.9 112 326-443 14-127 (144)
118 KOG1128 Uncharacterized conser 98.7 8.9E-06 1.9E-10 76.2 22.9 210 140-367 400-613 (777)
119 PRK15179 Vi polysaccharide bio 98.7 2.4E-06 5.2E-11 83.4 20.0 179 269-458 85-266 (694)
120 KOG3081 Vesicle coat complex C 98.7 3.2E-05 6.9E-10 63.8 22.7 249 146-405 16-274 (299)
121 KOG0548 Molecular co-chaperone 98.7 0.00011 2.3E-09 66.8 27.8 361 7-385 33-471 (539)
122 PLN02789 farnesyltranstransfer 98.7 4.3E-05 9.4E-10 67.7 24.9 208 140-352 39-266 (320)
123 TIGR03302 OM_YfiO outer membra 98.6 3.3E-06 7.1E-11 72.5 17.4 181 202-404 31-234 (235)
124 PF12854 PPR_1: PPR repeat 98.6 4.6E-08 1E-12 54.1 3.6 33 40-72 2-34 (34)
125 KOG1070 rRNA processing protei 98.6 2.2E-05 4.7E-10 78.8 24.0 223 201-426 1454-1689(1710)
126 PRK14720 transcript cleavage f 98.6 2.8E-05 6E-10 77.0 24.0 55 206-262 118-172 (906)
127 PRK10370 formate-dependent nit 98.6 8.5E-06 1.8E-10 67.1 17.6 125 283-411 52-181 (198)
128 COG5010 TadD Flp pilus assembl 98.6 3.2E-05 6.9E-10 63.7 20.5 119 275-396 105-225 (257)
129 TIGR02552 LcrH_SycD type III s 98.6 1.1E-06 2.5E-11 68.0 11.7 94 344-438 20-115 (135)
130 COG4783 Putative Zn-dependent 98.6 1.3E-05 2.8E-10 71.9 19.0 117 315-434 316-434 (484)
131 COG4783 Putative Zn-dependent 98.6 3.9E-05 8.4E-10 68.9 21.7 136 147-299 315-454 (484)
132 PRK15179 Vi polysaccharide bio 98.5 2E-05 4.4E-10 77.0 21.5 143 235-380 82-229 (694)
133 PRK14720 transcript cleavage f 98.5 0.0001 2.3E-09 73.1 24.6 59 171-231 118-176 (906)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 6.5E-06 1.4E-10 74.3 14.7 124 306-435 170-295 (395)
135 KOG3060 Uncharacterized conser 98.4 3.9E-05 8.5E-10 62.7 16.7 191 218-412 26-229 (289)
136 KOG2053 Mitochondrial inherita 98.4 0.0023 5.1E-08 62.0 32.3 88 309-399 440-533 (932)
137 KOG3060 Uncharacterized conser 98.4 0.00028 6E-09 57.9 20.5 186 182-371 25-222 (289)
138 KOG2053 Mitochondrial inherita 98.4 0.0029 6.2E-08 61.4 38.3 403 22-441 21-506 (932)
139 TIGR02552 LcrH_SycD type III s 98.4 1.7E-05 3.7E-10 61.4 13.4 110 292-405 5-117 (135)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.2E-05 4.8E-10 71.0 15.6 128 240-370 170-297 (395)
141 KOG2280 Vacuolar assembly/sort 98.3 0.0017 3.8E-08 61.6 25.9 108 241-364 686-793 (829)
142 PF09976 TPR_21: Tetratricopep 98.3 4.9E-05 1.1E-09 59.4 13.8 115 318-434 24-144 (145)
143 PRK15363 pathogenicity island 98.2 7.2E-05 1.6E-09 57.4 13.5 93 344-437 38-132 (157)
144 PF04840 Vps16_C: Vps16, C-ter 98.2 0.0034 7.3E-08 55.7 26.2 107 244-367 182-288 (319)
145 cd00189 TPR Tetratricopeptide 98.2 1.9E-05 4E-10 56.6 9.9 94 344-438 3-98 (100)
146 PF13414 TPR_11: TPR repeat; P 98.2 5.9E-06 1.3E-10 55.2 6.2 67 372-439 2-69 (69)
147 PF13432 TPR_16: Tetratricopep 98.2 4.2E-06 9.1E-11 55.1 5.4 61 379-440 3-63 (65)
148 TIGR00756 PPR pentatricopeptid 98.2 3.6E-06 7.8E-11 47.3 4.3 33 171-203 2-34 (35)
149 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.0048 1E-07 55.2 28.9 404 29-436 28-530 (660)
150 PF13812 PPR_3: Pentatricopept 98.2 4.2E-06 9.1E-11 46.7 4.3 33 170-202 2-34 (34)
151 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.4E-05 7.5E-10 58.1 10.8 92 347-438 8-106 (119)
152 TIGR00756 PPR pentatricopeptid 98.2 4.4E-06 9.6E-11 47.0 4.4 33 272-304 2-34 (35)
153 PF09976 TPR_21: Tetratricopep 98.1 0.00015 3.2E-09 56.7 14.3 124 273-399 15-144 (145)
154 PF12895 Apc3: Anaphase-promot 98.1 5.2E-06 1.1E-10 57.9 4.9 77 355-433 3-83 (84)
155 TIGR02795 tol_pal_ybgF tol-pal 98.1 7.7E-05 1.7E-09 56.1 11.6 104 307-411 4-113 (119)
156 PF13812 PPR_3: Pentatricopept 98.1 7.8E-06 1.7E-10 45.6 4.3 33 271-303 2-34 (34)
157 KOG0553 TPR repeat-containing 98.0 2.4E-05 5.2E-10 65.8 7.9 110 313-425 89-200 (304)
158 PLN03088 SGT1, suppressor of 98.0 4.1E-05 8.8E-10 69.6 10.0 107 311-420 8-116 (356)
159 PRK02603 photosystem I assembl 98.0 9.6E-05 2.1E-09 59.7 11.1 96 344-440 38-152 (172)
160 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.012 2.6E-07 52.8 25.4 402 6-418 38-545 (660)
161 KOG2041 WD40 repeat protein [G 97.9 0.019 4.2E-07 54.4 28.0 233 42-298 689-951 (1189)
162 PF14938 SNAP: Soluble NSF att 97.9 0.008 1.7E-07 53.0 22.6 96 273-368 158-264 (282)
163 cd00189 TPR Tetratricopeptide 97.9 0.00014 3E-09 51.9 9.8 89 313-403 8-98 (100)
164 PF14559 TPR_19: Tetratricopep 97.9 2.4E-05 5.3E-10 52.0 5.1 56 384-440 2-57 (68)
165 PF12895 Apc3: Anaphase-promot 97.9 4.1E-05 8.9E-10 53.3 6.3 47 284-330 3-50 (84)
166 KOG0550 Molecular chaperone (D 97.9 0.001 2.3E-08 58.6 15.4 155 279-440 178-353 (486)
167 PLN03088 SGT1, suppressor of 97.9 0.00036 7.9E-09 63.4 13.5 102 276-380 8-110 (356)
168 COG4235 Cytochrome c biogenesi 97.9 0.00059 1.3E-08 58.0 13.6 109 337-446 152-265 (287)
169 PF13371 TPR_9: Tetratricopept 97.9 5.1E-05 1.1E-09 51.2 6.1 62 380-442 2-63 (73)
170 PF08579 RPM2: Mitochondrial r 97.8 0.00042 9.1E-09 49.3 10.3 80 172-251 28-116 (120)
171 COG4700 Uncharacterized protei 97.8 0.0059 1.3E-07 47.9 17.1 126 301-429 85-214 (251)
172 PF05843 Suf: Suppressor of fo 97.8 0.00093 2E-08 58.6 14.5 132 271-405 2-139 (280)
173 KOG1538 Uncharacterized conser 97.8 0.0056 1.2E-07 57.3 19.5 52 306-367 748-799 (1081)
174 PF14938 SNAP: Soluble NSF att 97.8 0.0011 2.3E-08 58.5 14.8 54 144-197 120-183 (282)
175 PF01535 PPR: PPR repeat; Int 97.8 3.6E-05 7.7E-10 41.7 3.4 29 171-199 2-30 (31)
176 KOG2796 Uncharacterized conser 97.8 0.0089 1.9E-07 49.7 18.3 138 170-309 178-323 (366)
177 CHL00033 ycf3 photosystem I as 97.8 0.00034 7.3E-09 56.3 10.5 91 341-432 35-137 (168)
178 PRK02603 photosystem I assembl 97.8 0.001 2.2E-08 53.7 13.2 90 169-259 35-126 (172)
179 PRK10153 DNA-binding transcrip 97.8 0.0017 3.8E-08 61.8 16.4 138 301-442 333-487 (517)
180 KOG0553 TPR repeat-containing 97.7 0.00038 8.2E-09 58.8 10.5 123 278-403 89-216 (304)
181 PF01535 PPR: PPR repeat; Int 97.7 4.6E-05 1E-09 41.3 3.5 31 11-41 1-31 (31)
182 PF05843 Suf: Suppressor of fo 97.7 0.00043 9.2E-09 60.7 11.2 130 306-437 2-136 (280)
183 PRK10866 outer membrane biogen 97.7 0.019 4.2E-07 49.0 20.6 59 174-234 37-99 (243)
184 PF10037 MRP-S27: Mitochondria 97.7 0.00088 1.9E-08 61.2 12.5 117 136-252 64-186 (429)
185 PRK10153 DNA-binding transcrip 97.7 0.0031 6.7E-08 60.1 16.7 137 267-405 334-485 (517)
186 PRK15363 pathogenicity island 97.7 0.0017 3.7E-08 50.0 11.9 85 315-401 45-131 (157)
187 PF04840 Vps16_C: Vps16, C-ter 97.7 0.039 8.4E-07 49.1 25.2 273 12-328 2-285 (319)
188 PF12688 TPR_5: Tetratrico pep 97.6 0.0023 5.1E-08 47.4 12.3 89 175-264 7-100 (120)
189 CHL00033 ycf3 photosystem I as 97.6 0.0022 4.7E-08 51.6 13.2 80 170-250 36-117 (168)
190 KOG1130 Predicted G-alpha GTPa 97.6 0.00097 2.1E-08 58.8 10.9 132 306-437 196-344 (639)
191 PF13432 TPR_16: Tetratricopep 97.6 0.0003 6.5E-09 46.1 6.2 59 347-405 3-63 (65)
192 COG4700 Uncharacterized protei 97.6 0.021 4.6E-07 44.9 16.8 97 202-298 87-188 (251)
193 KOG2280 Vacuolar assembly/sort 97.6 0.086 1.9E-06 50.7 26.8 319 80-431 441-793 (829)
194 PF08579 RPM2: Mitochondrial r 97.6 0.0016 3.4E-08 46.5 9.7 79 274-353 29-116 (120)
195 PRK10866 outer membrane biogen 97.6 0.032 7E-07 47.7 19.8 62 137-198 31-98 (243)
196 PF10037 MRP-S27: Mitochondria 97.5 0.002 4.3E-08 59.0 12.7 113 203-315 65-183 (429)
197 PF06239 ECSIT: Evolutionarily 97.5 0.0016 3.5E-08 52.6 10.2 97 158-254 34-153 (228)
198 KOG1258 mRNA processing protei 97.5 0.096 2.1E-06 49.2 26.8 396 11-422 46-489 (577)
199 PF12688 TPR_5: Tetratrico pep 97.4 0.0052 1.1E-07 45.6 11.8 90 276-365 7-99 (120)
200 PRK10803 tol-pal system protei 97.4 0.0014 3.1E-08 56.4 10.1 60 378-437 185-246 (263)
201 PF14559 TPR_19: Tetratricopep 97.4 0.00078 1.7E-08 44.6 6.8 49 317-367 3-51 (68)
202 PF13525 YfiO: Outer membrane 97.4 0.048 1E-06 45.3 18.8 178 175-361 11-198 (203)
203 PF13414 TPR_11: TPR repeat; P 97.4 0.0005 1.1E-08 45.7 5.7 64 341-404 3-69 (69)
204 KOG2796 Uncharacterized conser 97.4 0.015 3.3E-07 48.4 14.4 134 271-405 178-318 (366)
205 KOG0550 Molecular chaperone (D 97.3 0.088 1.9E-06 47.0 19.1 21 411-431 417-437 (486)
206 KOG2041 WD40 repeat protein [G 97.3 0.18 4E-06 48.2 26.9 200 7-228 689-902 (1189)
207 COG3898 Uncharacterized membra 97.3 0.12 2.7E-06 45.8 28.0 282 141-437 85-392 (531)
208 PF13281 DUF4071: Domain of un 97.3 0.054 1.2E-06 48.7 18.0 163 239-404 141-336 (374)
209 PF13281 DUF4071: Domain of un 97.2 0.039 8.5E-07 49.6 16.7 167 271-438 142-335 (374)
210 PRK15331 chaperone protein Sic 97.2 0.0029 6.4E-08 49.0 8.5 85 315-401 47-133 (165)
211 PF13525 YfiO: Outer membrane 97.2 0.023 5E-07 47.2 14.1 165 142-325 9-198 (203)
212 PF03704 BTAD: Bacterial trans 97.1 0.0018 3.8E-08 50.7 6.9 70 375-445 64-138 (146)
213 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0025 5.3E-08 57.9 8.4 98 339-440 73-177 (453)
214 KOG1130 Predicted G-alpha GTPa 97.1 0.0057 1.2E-07 54.2 10.2 128 206-333 197-343 (639)
215 PF13428 TPR_14: Tetratricopep 97.1 0.0012 2.7E-08 39.0 4.2 42 374-416 2-43 (44)
216 PF06239 ECSIT: Evolutionarily 97.0 0.0089 1.9E-07 48.5 10.0 87 268-355 45-152 (228)
217 COG4235 Cytochrome c biogenesi 97.0 0.038 8.2E-07 47.3 14.0 102 302-405 153-259 (287)
218 PF13424 TPR_12: Tetratricopep 97.0 0.0015 3.3E-08 44.6 4.8 63 374-436 6-74 (78)
219 KOG0543 FKBP-type peptidyl-pro 97.0 0.014 3.1E-07 51.8 11.7 96 341-437 257-355 (397)
220 KOG1538 Uncharacterized conser 97.0 0.18 3.9E-06 47.8 18.9 267 139-440 557-849 (1081)
221 PF13431 TPR_17: Tetratricopep 97.0 0.00085 1.8E-08 36.9 2.6 32 396-428 2-33 (34)
222 PRK10803 tol-pal system protei 97.0 0.018 3.8E-07 49.7 12.0 98 308-405 146-249 (263)
223 KOG2114 Vacuolar assembly/sort 96.9 0.52 1.1E-05 46.3 24.3 51 346-397 710-760 (933)
224 PF13371 TPR_9: Tetratricopept 96.9 0.005 1.1E-07 41.3 6.5 57 349-405 3-61 (73)
225 PF12921 ATP13: Mitochondrial 96.9 0.02 4.3E-07 43.0 10.1 53 300-352 47-99 (126)
226 PF07079 DUF1347: Protein of u 96.8 0.36 7.7E-06 43.9 34.3 404 21-434 17-521 (549)
227 PF03704 BTAD: Bacterial trans 96.8 0.041 9E-07 43.0 12.2 72 171-243 64-140 (146)
228 PF09205 DUF1955: Domain of un 96.7 0.15 3.3E-06 37.8 13.9 141 280-440 12-152 (161)
229 PF13424 TPR_12: Tetratricopep 96.6 0.0097 2.1E-07 40.5 6.4 23 172-194 49-71 (78)
230 PF07079 DUF1347: Protein of u 96.6 0.55 1.2E-05 42.8 29.6 47 352-398 473-520 (549)
231 PRK15331 chaperone protein Sic 96.5 0.15 3.3E-06 39.7 12.9 86 350-436 46-133 (165)
232 KOG1941 Acetylcholine receptor 96.4 0.1 2.2E-06 45.8 12.6 165 271-435 84-273 (518)
233 KOG0543 FKBP-type peptidyl-pro 96.4 0.015 3.2E-07 51.7 7.7 69 373-442 257-325 (397)
234 PF04053 Coatomer_WDAD: Coatom 96.4 0.21 4.5E-06 46.8 15.5 131 108-263 296-426 (443)
235 PF04053 Coatomer_WDAD: Coatom 96.4 0.46 9.9E-06 44.6 17.7 154 20-193 271-426 (443)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.037 7.9E-07 50.6 9.5 63 302-367 72-138 (453)
237 PF10300 DUF3808: Protein of u 96.2 0.37 8E-06 45.9 16.4 114 319-436 247-375 (468)
238 KOG1585 Protein required for f 96.2 0.61 1.3E-05 38.8 15.1 50 346-396 195-250 (308)
239 KOG2114 Vacuolar assembly/sort 96.1 1.6 3.5E-05 43.1 20.5 175 12-195 336-516 (933)
240 COG3118 Thioredoxin domain-con 96.1 0.73 1.6E-05 39.7 15.7 119 315-437 144-265 (304)
241 PF12921 ATP13: Mitochondrial 96.1 0.14 3E-06 38.5 10.4 47 167-213 50-97 (126)
242 PRK11906 transcriptional regul 96.1 0.17 3.7E-06 46.5 12.7 118 286-405 274-404 (458)
243 KOG2066 Vacuolar assembly/sort 96.0 1.8 3.8E-05 42.5 25.3 101 17-119 363-467 (846)
244 COG1729 Uncharacterized protei 96.0 0.063 1.4E-06 45.4 9.1 58 379-436 184-243 (262)
245 smart00299 CLH Clathrin heavy 95.9 0.57 1.2E-05 36.2 15.4 88 11-102 8-95 (140)
246 COG3898 Uncharacterized membra 95.9 1.3 2.7E-05 39.8 26.5 119 79-198 85-217 (531)
247 PRK11619 lytic murein transgly 95.8 2.4 5.1E-05 42.2 32.6 114 283-399 254-372 (644)
248 COG1729 Uncharacterized protei 95.8 0.13 2.8E-06 43.6 9.9 86 282-367 153-241 (262)
249 PF13512 TPR_18: Tetratricopep 95.7 0.31 6.6E-06 37.1 10.9 53 353-405 22-79 (142)
250 PF09205 DUF1955: Domain of un 95.7 0.25 5.5E-06 36.6 9.9 138 87-236 13-152 (161)
251 PF13428 TPR_14: Tetratricopep 95.6 0.017 3.7E-07 34.0 3.2 36 408-443 1-36 (44)
252 COG0457 NrfG FOG: TPR repeat [ 95.5 1.3 2.7E-05 37.5 26.9 218 183-404 37-267 (291)
253 PF10300 DUF3808: Protein of u 95.5 1.6 3.5E-05 41.6 17.6 159 172-333 191-375 (468)
254 KOG1920 IkappaB kinase complex 95.5 3.6 7.8E-05 42.6 26.9 53 82-134 683-743 (1265)
255 KOG2610 Uncharacterized conser 95.5 0.21 4.6E-06 43.4 10.3 161 281-444 114-283 (491)
256 KOG1585 Protein required for f 95.5 1.3 2.7E-05 37.0 15.4 25 109-133 33-57 (308)
257 KOG3941 Intermediate in Toll s 95.5 0.17 3.7E-06 42.8 9.4 89 167-255 65-174 (406)
258 smart00299 CLH Clathrin heavy 95.4 0.89 1.9E-05 35.1 15.1 129 271-420 8-137 (140)
259 KOG1258 mRNA processing protei 95.4 2.6 5.7E-05 40.1 28.5 332 21-356 90-490 (577)
260 KOG2610 Uncharacterized conser 95.4 0.55 1.2E-05 41.0 12.3 147 250-399 114-273 (491)
261 COG4105 ComL DNA uptake lipopr 95.3 1.5 3.3E-05 37.0 20.0 60 379-440 173-235 (254)
262 KOG4234 TPR repeat-containing 95.3 0.075 1.6E-06 42.5 6.6 124 313-439 103-235 (271)
263 PF13512 TPR_18: Tetratricopep 95.3 0.85 1.9E-05 34.8 11.9 55 279-333 19-75 (142)
264 KOG0403 Neoplastic transformat 95.2 2.4 5.2E-05 38.8 17.8 109 344-458 512-630 (645)
265 COG0457 NrfG FOG: TPR repeat [ 95.2 1.7 3.7E-05 36.6 25.6 196 239-437 59-265 (291)
266 KOG4555 TPR repeat-containing 95.1 0.18 3.8E-06 37.3 7.4 90 314-405 52-147 (175)
267 COG3629 DnrI DNA-binding trans 95.1 0.13 2.7E-06 44.4 7.9 58 343-400 155-214 (280)
268 KOG1941 Acetylcholine receptor 95.1 0.26 5.6E-06 43.4 9.7 211 20-230 16-272 (518)
269 PRK15180 Vi polysaccharide bio 95.0 0.51 1.1E-05 43.3 11.5 140 315-459 299-440 (831)
270 PF02259 FAT: FAT domain; Int 94.9 2.9 6.3E-05 38.3 17.5 67 371-437 144-213 (352)
271 KOG4555 TPR repeat-containing 94.9 0.29 6.3E-06 36.2 8.1 88 279-367 52-141 (175)
272 PF00637 Clathrin: Region in C 94.9 0.016 3.5E-07 45.1 1.9 130 14-153 11-140 (143)
273 PF13176 TPR_7: Tetratricopept 94.8 0.061 1.3E-06 30.0 3.7 26 410-435 1-26 (36)
274 COG4649 Uncharacterized protei 94.7 0.95 2.1E-05 35.5 10.7 54 179-232 142-195 (221)
275 PRK09687 putative lyase; Provi 94.7 2.8 6.1E-05 36.8 26.2 78 73-150 34-117 (280)
276 COG4105 ComL DNA uptake lipopr 94.6 2.5 5.4E-05 35.8 19.8 74 177-250 42-117 (254)
277 PRK11906 transcriptional regul 94.6 3 6.5E-05 38.7 15.6 140 254-398 273-432 (458)
278 PF00515 TPR_1: Tetratricopept 94.5 0.11 2.3E-06 28.4 4.2 30 375-404 3-32 (34)
279 COG3118 Thioredoxin domain-con 94.5 2.9 6.4E-05 36.1 18.1 139 213-355 143-286 (304)
280 PF07719 TPR_2: Tetratricopept 94.4 0.12 2.7E-06 28.1 4.4 26 411-436 4-29 (34)
281 PF04184 ST7: ST7 protein; In 94.4 1.8 3.8E-05 40.3 13.6 60 377-436 263-323 (539)
282 PF10602 RPN7: 26S proteasome 94.3 1.2 2.6E-05 36.0 11.5 97 271-367 37-139 (177)
283 KOG3941 Intermediate in Toll s 94.2 0.62 1.3E-05 39.6 9.6 97 260-357 55-174 (406)
284 PF07719 TPR_2: Tetratricopept 94.2 0.1 2.2E-06 28.4 3.6 32 374-405 2-33 (34)
285 PF04184 ST7: ST7 protein; In 94.1 5 0.00011 37.5 17.1 142 180-333 179-323 (539)
286 PF07035 Mic1: Colon cancer-as 94.1 1.1 2.3E-05 35.5 10.3 129 31-163 15-145 (167)
287 PF00515 TPR_1: Tetratricopept 94.1 0.11 2.3E-06 28.4 3.6 32 409-440 2-33 (34)
288 PF08631 SPO22: Meiosis protei 94.0 4.1 8.8E-05 35.9 23.5 18 383-400 256-273 (278)
289 COG2976 Uncharacterized protei 93.9 2.1 4.6E-05 34.5 11.5 88 313-403 97-189 (207)
290 PF02259 FAT: FAT domain; Int 93.7 5.4 0.00012 36.5 22.6 148 269-420 145-304 (352)
291 PF13176 TPR_7: Tetratricopept 93.7 0.065 1.4E-06 29.9 2.2 28 375-402 1-28 (36)
292 KOG4648 Uncharacterized conser 93.2 0.26 5.7E-06 43.0 5.9 93 311-405 103-197 (536)
293 PF07035 Mic1: Colon cancer-as 92.8 4 8.6E-05 32.3 12.7 115 3-123 22-136 (167)
294 KOG1920 IkappaB kinase complex 92.8 14 0.00031 38.6 23.2 141 242-398 911-1051(1265)
295 COG2909 MalT ATP-dependent tra 92.8 12 0.00026 37.8 19.1 194 248-442 424-652 (894)
296 PF10602 RPN7: 26S proteasome 92.5 1.6 3.4E-05 35.3 9.4 94 341-434 36-139 (177)
297 TIGR02561 HrpB1_HrpK type III 92.2 1.2 2.7E-05 34.0 7.7 82 341-425 7-95 (153)
298 PF13431 TPR_17: Tetratricopep 92.1 0.28 6.1E-06 26.8 3.3 31 228-259 3-33 (34)
299 PF09613 HrpB1_HrpK: Bacterial 92.1 1.5 3.3E-05 34.2 8.2 99 341-441 7-110 (160)
300 PF13170 DUF4003: Protein of u 91.8 8.8 0.00019 34.0 15.3 136 287-424 79-233 (297)
301 PF08631 SPO22: Meiosis protei 91.8 8.6 0.00019 33.8 23.7 61 272-333 86-149 (278)
302 KOG2066 Vacuolar assembly/sort 91.6 16 0.00034 36.4 27.2 99 52-150 363-467 (846)
303 PF04097 Nic96: Nup93/Nic96; 91.5 16 0.00035 36.4 19.5 31 341-371 500-535 (613)
304 PF13174 TPR_6: Tetratricopept 91.5 0.29 6.3E-06 26.3 3.0 27 411-437 3-29 (33)
305 COG3629 DnrI DNA-binding trans 91.4 3.2 7E-05 36.0 10.4 77 171-248 155-236 (280)
306 PF09613 HrpB1_HrpK: Bacterial 91.2 6 0.00013 31.0 12.5 87 316-405 21-109 (160)
307 PF00637 Clathrin: Region in C 91.2 0.29 6.3E-06 38.0 3.8 128 276-423 13-140 (143)
308 PF07721 TPR_4: Tetratricopept 91.1 0.43 9.3E-06 24.1 3.1 23 410-432 3-25 (26)
309 KOG1586 Protein required for f 91.0 8.4 0.00018 32.2 14.0 18 213-230 23-40 (288)
310 PRK09687 putative lyase; Provi 90.8 11 0.00024 33.2 26.5 61 340-404 205-265 (280)
311 PF13181 TPR_8: Tetratricopept 90.5 0.42 9E-06 25.9 3.0 29 410-438 3-31 (34)
312 PF13181 TPR_8: Tetratricopept 90.3 0.59 1.3E-05 25.3 3.5 31 375-405 3-33 (34)
313 COG1747 Uncharacterized N-term 90.3 16 0.00036 34.4 22.2 45 373-418 205-249 (711)
314 KOG0890 Protein kinase of the 90.1 40 0.00086 38.5 27.9 144 81-228 1388-1542(2382)
315 PF13374 TPR_10: Tetratricopep 90.1 0.64 1.4E-05 26.6 3.8 28 409-436 3-30 (42)
316 KOG4234 TPR repeat-containing 90.0 7.4 0.00016 31.7 10.4 93 277-373 102-201 (271)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 2.8 6.1E-05 29.3 7.1 63 285-349 22-84 (103)
318 COG4649 Uncharacterized protei 89.9 8.4 0.00018 30.5 13.9 52 282-333 144-195 (221)
319 PF02284 COX5A: Cytochrome c o 89.9 2.5 5.3E-05 29.9 6.8 62 286-349 26-87 (108)
320 KOG2471 TPR repeat-containing 89.8 17 0.00038 34.0 14.3 103 247-352 248-380 (696)
321 PF13170 DUF4003: Protein of u 89.7 9.5 0.0002 33.8 12.1 50 185-234 78-133 (297)
322 KOG4570 Uncharacterized conser 89.2 3.1 6.6E-05 36.3 8.3 96 137-234 63-165 (418)
323 COG2976 Uncharacterized protei 89.1 11 0.00023 30.6 13.4 55 382-438 135-189 (207)
324 PRK10941 hypothetical protein; 89.0 2.3 5E-05 36.9 7.7 67 375-442 183-249 (269)
325 KOG0276 Vesicle coat complex C 88.8 11 0.00025 36.1 12.3 151 87-265 597-747 (794)
326 PF10345 Cohesin_load: Cohesin 88.6 28 0.00061 34.8 24.6 49 384-432 372-428 (608)
327 KOG1550 Extracellular protein 88.5 27 0.00058 34.4 23.4 275 154-439 228-540 (552)
328 KOG0276 Vesicle coat complex C 88.4 14 0.0003 35.6 12.5 97 282-397 649-745 (794)
329 COG3947 Response regulator con 88.3 16 0.00036 31.7 12.2 39 92-130 149-189 (361)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 88.0 4.9 0.00011 28.2 7.1 46 187-232 25-70 (103)
331 PF13174 TPR_6: Tetratricopept 87.9 0.94 2E-05 24.1 3.2 29 377-405 4-32 (33)
332 TIGR03504 FimV_Cterm FimV C-te 87.9 0.92 2E-05 26.6 3.2 25 413-437 4-28 (44)
333 KOG2396 HAT (Half-A-TPR) repea 87.7 25 0.00054 33.1 31.4 242 186-435 299-557 (568)
334 PF13374 TPR_10: Tetratricopep 87.6 1.3 2.8E-05 25.2 3.9 29 374-402 3-31 (42)
335 KOG1464 COP9 signalosome, subu 87.3 18 0.00039 31.0 18.3 58 174-231 150-218 (440)
336 KOG4648 Uncharacterized conser 87.3 2.5 5.4E-05 37.3 6.7 93 277-373 104-198 (536)
337 PF06552 TOM20_plant: Plant sp 87.2 1.7 3.6E-05 34.6 5.2 108 321-439 7-138 (186)
338 PF14669 Asp_Glu_race_2: Putat 87.1 14 0.00031 29.8 13.0 175 3-194 1-206 (233)
339 KOG0890 Protein kinase of the 87.0 64 0.0014 37.1 29.4 310 112-439 1388-1733(2382)
340 COG4455 ImpE Protein of avirul 86.8 2.8 6.1E-05 34.5 6.3 74 344-417 4-81 (273)
341 PF02284 COX5A: Cytochrome c o 86.7 5.6 0.00012 28.2 6.9 60 187-247 28-87 (108)
342 KOG4570 Uncharacterized conser 86.5 5.6 0.00012 34.7 8.3 96 269-367 63-161 (418)
343 TIGR02508 type_III_yscG type I 86.5 9.4 0.0002 27.0 8.4 78 25-105 20-97 (115)
344 PRK13800 putative oxidoreducta 86.5 47 0.001 35.1 26.2 253 66-333 625-880 (897)
345 KOG1550 Extracellular protein 85.8 38 0.00083 33.4 15.3 15 220-234 228-242 (552)
346 KOG1464 COP9 signalosome, subu 85.6 22 0.00048 30.5 17.8 242 151-398 40-328 (440)
347 smart00028 TPR Tetratricopepti 85.0 1.9 4.1E-05 22.2 3.6 28 410-437 3-30 (34)
348 PF14561 TPR_20: Tetratricopep 85.0 4.6 0.0001 28.2 6.1 52 372-423 21-73 (90)
349 PF04097 Nic96: Nup93/Nic96; 85.0 44 0.00096 33.4 20.0 163 271-434 325-531 (613)
350 COG4785 NlpI Lipoprotein NlpI, 84.6 22 0.00047 29.5 15.7 61 238-298 98-161 (297)
351 PRK11619 lytic murein transgly 84.4 48 0.001 33.3 38.4 299 22-333 45-374 (644)
352 KOG0545 Aryl-hydrocarbon recep 84.2 7.6 0.00016 32.7 7.8 25 308-332 181-205 (329)
353 COG3947 Response regulator con 84.1 28 0.00061 30.4 13.4 60 375-435 281-340 (361)
354 PF11207 DUF2989: Protein of u 84.0 14 0.0003 30.3 9.1 73 287-360 123-197 (203)
355 TIGR02508 type_III_yscG type I 83.7 13 0.00029 26.3 9.6 86 220-309 21-106 (115)
356 PRK13800 putative oxidoreducta 83.6 64 0.0014 34.2 28.9 265 96-380 624-891 (897)
357 TIGR02561 HrpB1_HrpK type III 83.6 18 0.0004 27.9 11.7 17 351-367 54-70 (153)
358 TIGR03504 FimV_Cterm FimV C-te 83.6 2.5 5.5E-05 24.7 3.6 26 15-40 4-29 (44)
359 KOG0686 COP9 signalosome, subu 83.4 36 0.00079 31.2 15.1 59 172-230 153-213 (466)
360 PF11207 DUF2989: Protein of u 83.3 16 0.00035 29.9 9.2 72 186-258 123-197 (203)
361 KOG3364 Membrane protein invol 83.1 6 0.00013 29.8 6.1 25 381-405 79-103 (149)
362 KOG0687 26S proteasome regulat 82.3 35 0.00076 30.3 13.0 22 344-365 107-128 (393)
363 KOG1308 Hsp70-interacting prot 82.2 1.2 2.7E-05 39.1 2.8 117 316-436 125-243 (377)
364 smart00028 TPR Tetratricopepti 82.0 2.5 5.4E-05 21.7 3.2 30 375-404 3-32 (34)
365 TIGR02270 conserved hypothetic 81.3 48 0.001 31.1 24.9 54 65-118 89-142 (410)
366 PF09986 DUF2225: Uncharacteri 81.2 21 0.00046 29.9 9.6 51 390-440 142-197 (214)
367 COG4455 ImpE Protein of avirul 80.6 12 0.00026 31.0 7.5 126 272-405 3-137 (273)
368 PRK12798 chemotaxis protein; R 80.5 49 0.0011 30.7 21.5 187 252-442 125-329 (421)
369 PF04190 DUF410: Protein of un 80.3 39 0.00084 29.4 19.6 157 150-333 2-169 (260)
370 cd08819 CARD_MDA5_2 Caspase ac 79.9 10 0.00022 26.1 5.9 36 151-187 49-84 (88)
371 smart00386 HAT HAT (Half-A-TPR 79.8 4.6 0.0001 21.1 3.8 30 387-417 1-30 (33)
372 PF14853 Fis1_TPR_C: Fis1 C-te 78.7 2.9 6.3E-05 25.7 2.8 30 379-409 7-36 (53)
373 KOG4507 Uncharacterized conser 77.7 19 0.00041 34.6 8.9 138 302-442 568-710 (886)
374 PF09477 Type_III_YscG: Bacter 77.1 25 0.00054 25.4 9.4 78 25-105 21-98 (116)
375 PF14853 Fis1_TPR_C: Fis1 C-te 76.7 4.6 9.9E-05 24.8 3.3 25 416-440 9-33 (53)
376 PF06552 TOM20_plant: Plant sp 76.2 39 0.00084 27.2 9.5 61 287-352 52-124 (186)
377 cd08819 CARD_MDA5_2 Caspase ac 75.4 24 0.00052 24.4 6.8 38 251-289 48-85 (88)
378 KOG4279 Serine/threonine prote 75.2 85 0.0018 31.6 12.5 118 222-342 181-321 (1226)
379 PF07163 Pex26: Pex26 protein; 75.1 46 0.001 28.9 9.7 83 246-328 90-181 (309)
380 KOG2396 HAT (Half-A-TPR) repea 75.1 78 0.0017 30.1 18.9 232 158-401 302-558 (568)
381 PF13934 ELYS: Nuclear pore co 74.6 49 0.0011 28.0 10.1 109 37-152 71-186 (226)
382 COG5159 RPN6 26S proteasome re 74.5 58 0.0013 28.4 12.1 53 175-227 9-68 (421)
383 COG5159 RPN6 26S proteasome re 74.5 58 0.0013 28.4 11.9 53 276-328 9-68 (421)
384 cd08326 CARD_CASP9 Caspase act 74.4 15 0.00033 25.3 5.7 60 129-188 21-80 (84)
385 KOG4642 Chaperone-dependent E3 73.3 13 0.00029 31.2 6.0 118 314-434 19-143 (284)
386 KOG4077 Cytochrome c oxidase, 72.7 30 0.00065 25.8 7.0 71 288-369 67-137 (149)
387 PF04190 DUF410: Protein of un 72.6 65 0.0014 28.0 15.5 159 251-437 2-170 (260)
388 PF09477 Type_III_YscG: Bacter 72.0 34 0.00075 24.7 9.9 86 219-308 21-106 (116)
389 PF11846 DUF3366: Domain of un 71.4 19 0.00041 29.5 6.9 30 338-367 141-170 (193)
390 COG4785 NlpI Lipoprotein NlpI, 71.2 60 0.0013 27.1 15.7 29 138-166 99-127 (297)
391 COG1747 Uncharacterized N-term 71.2 99 0.0021 29.6 21.7 173 168-349 65-247 (711)
392 PRK15180 Vi polysaccharide bio 71.0 95 0.0021 29.3 25.5 114 19-133 298-417 (831)
393 PF10579 Rapsyn_N: Rapsyn N-te 70.5 16 0.00034 24.7 4.8 45 385-430 18-65 (80)
394 KOG0376 Serine-threonine phosp 70.4 3.9 8.5E-05 37.9 2.8 97 311-411 10-109 (476)
395 PF07163 Pex26: Pex26 protein; 69.9 75 0.0016 27.7 9.8 85 176-262 90-181 (309)
396 KOG4077 Cytochrome c oxidase, 69.6 40 0.00086 25.2 7.1 46 188-233 68-113 (149)
397 PF09670 Cas_Cas02710: CRISPR- 67.7 1.1E+02 0.0023 28.6 11.9 54 279-333 140-197 (379)
398 KOG0292 Vesicle coat complex C 67.6 48 0.001 33.8 9.3 131 282-440 655-785 (1202)
399 PF10579 Rapsyn_N: Rapsyn N-te 67.4 16 0.00035 24.6 4.4 17 317-333 18-34 (80)
400 COG4976 Predicted methyltransf 67.3 13 0.00027 31.1 4.7 56 384-440 6-61 (287)
401 PF14689 SPOB_a: Sensor_kinase 67.1 23 0.00049 22.7 5.0 26 171-196 25-50 (62)
402 PF10255 Paf67: RNA polymerase 66.9 44 0.00095 31.1 8.6 56 141-196 125-191 (404)
403 PF13934 ELYS: Nuclear pore co 66.9 79 0.0017 26.8 12.9 104 78-183 78-186 (226)
404 KOG4279 Serine/threonine prote 66.3 80 0.0017 31.7 10.4 62 169-233 201-272 (1226)
405 KOG4507 Uncharacterized conser 66.0 25 0.00054 33.9 6.9 101 317-419 619-721 (886)
406 PF10366 Vps39_1: Vacuolar sor 65.6 47 0.001 24.2 7.1 27 272-298 41-67 (108)
407 PF13762 MNE1: Mitochondrial s 65.5 62 0.0013 25.1 9.7 48 270-317 79-127 (145)
408 PF04910 Tcf25: Transcriptiona 65.3 1.1E+02 0.0025 28.1 13.8 125 302-436 37-167 (360)
409 PF11848 DUF3368: Domain of un 65.0 24 0.00052 21.1 4.5 36 19-54 11-46 (48)
410 COG2909 MalT ATP-dependent tra 64.7 1.8E+02 0.0038 30.1 27.9 219 148-367 425-685 (894)
411 COG5187 RPN7 26S proteasome re 64.7 98 0.0021 27.1 11.3 67 339-405 113-187 (412)
412 PF12862 Apc5: Anaphase-promot 64.6 32 0.0007 24.2 6.0 23 382-404 50-72 (94)
413 PHA02875 ankyrin repeat protei 64.4 1.3E+02 0.0028 28.3 13.1 142 19-164 8-158 (413)
414 PF10345 Cohesin_load: Cohesin 64.1 1.6E+02 0.0036 29.5 35.9 407 27-435 38-604 (608)
415 KOG1498 26S proteasome regulat 63.7 1.2E+02 0.0026 27.9 12.6 202 252-458 25-262 (439)
416 PF10255 Paf67: RNA polymerase 62.7 43 0.00093 31.1 7.8 56 109-164 124-190 (404)
417 cd08332 CARD_CASP2 Caspase act 62.4 39 0.00084 23.6 5.9 47 138-184 34-80 (90)
418 KOG2063 Vacuolar assembly/sort 61.9 2.1E+02 0.0045 29.9 21.4 369 17-418 314-742 (877)
419 TIGR02270 conserved hypothetic 61.4 1.5E+02 0.0032 28.0 24.2 54 96-149 89-142 (410)
420 KOG3807 Predicted membrane pro 60.9 1.2E+02 0.0026 27.1 9.6 54 277-332 282-338 (556)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 60.6 70 0.0015 24.1 8.7 43 391-433 81-124 (126)
422 COG0735 Fur Fe2+/Zn2+ uptake r 60.5 76 0.0016 24.6 7.8 66 357-423 5-70 (145)
423 COG0790 FOG: TPR repeat, SEL1 60.1 1.2E+02 0.0027 26.7 19.1 49 388-440 206-269 (292)
424 PRK11639 zinc uptake transcrip 59.9 71 0.0015 25.6 7.8 55 335-390 20-77 (169)
425 KOG3807 Predicted membrane pro 59.8 1.3E+02 0.0028 26.9 9.8 109 151-268 229-343 (556)
426 PF11846 DUF3366: Domain of un 59.8 40 0.00086 27.7 6.7 37 368-404 139-175 (193)
427 PF11838 ERAP1_C: ERAP1-like C 59.2 1.4E+02 0.0029 26.9 16.8 82 321-402 146-230 (324)
428 PF11848 DUF3368: Domain of un 58.8 37 0.0008 20.3 5.1 33 281-313 13-45 (48)
429 KOG1308 Hsp70-interacting prot 58.6 12 0.00026 33.3 3.4 87 354-441 127-215 (377)
430 cd08326 CARD_CASP9 Caspase act 58.0 35 0.00076 23.5 5.0 32 90-121 44-75 (84)
431 PF14689 SPOB_a: Sensor_kinase 58.0 26 0.00055 22.4 4.1 26 308-333 26-51 (62)
432 PRK10941 hypothetical protein; 58.0 1.3E+02 0.0028 26.3 10.1 74 274-348 185-258 (269)
433 KOG1586 Protein required for f 58.0 1.2E+02 0.0026 25.8 17.3 14 182-195 27-40 (288)
434 PRK11639 zinc uptake transcrip 57.5 18 0.00039 28.9 4.1 36 24-59 39-74 (169)
435 PRK13342 recombination factor 56.4 1.8E+02 0.0039 27.5 15.1 101 201-316 173-276 (413)
436 KOG3824 Huntingtin interacting 56.0 21 0.00045 31.3 4.3 47 386-433 129-175 (472)
437 COG4259 Uncharacterized protei 55.8 43 0.00093 23.7 5.0 42 392-433 56-97 (121)
438 PF10366 Vps39_1: Vacuolar sor 55.8 61 0.0013 23.6 6.2 27 171-197 41-67 (108)
439 PRK10564 maltose regulon perip 55.7 27 0.00058 30.7 5.0 37 171-207 259-295 (303)
440 KOG0551 Hsp90 co-chaperone CNS 55.2 68 0.0015 28.7 7.2 56 375-431 121-176 (390)
441 PF08424 NRDE-2: NRDE-2, neces 55.0 1.6E+02 0.0036 26.6 15.9 95 269-366 18-127 (321)
442 PF09454 Vps23_core: Vps23 cor 54.7 40 0.00087 21.8 4.5 52 6-58 4-55 (65)
443 PF14863 Alkyl_sulf_dimr: Alky 53.9 77 0.0017 24.4 6.7 63 357-423 57-119 (141)
444 PF11817 Foie-gras_1: Foie gra 53.9 56 0.0012 28.2 6.8 53 310-362 183-239 (247)
445 PF09670 Cas_Cas02710: CRISPR- 52.9 2E+02 0.0042 26.8 12.2 55 178-233 140-198 (379)
446 PF03745 DUF309: Domain of unk 52.6 58 0.0013 20.8 5.0 49 20-68 9-62 (62)
447 PRK09462 fur ferric uptake reg 52.4 31 0.00068 26.8 4.6 59 2-61 9-68 (148)
448 PF11817 Foie-gras_1: Foie gra 52.3 70 0.0015 27.6 7.2 58 377-434 182-244 (247)
449 KOG4521 Nuclear pore complex, 52.3 3.4E+02 0.0073 29.3 14.5 120 308-429 986-1123(1480)
450 COG5191 Uncharacterized conser 52.2 32 0.00069 30.3 4.8 81 336-417 102-185 (435)
451 PF11663 Toxin_YhaV: Toxin wit 52.1 17 0.00036 27.5 2.8 32 180-213 106-137 (140)
452 PF11663 Toxin_YhaV: Toxin wit 51.8 20 0.00043 27.1 3.1 33 280-314 105-137 (140)
453 cd00280 TRFH Telomeric Repeat 51.8 1.2E+02 0.0026 24.6 7.5 22 312-333 118-139 (200)
454 cd00280 TRFH Telomeric Repeat 51.5 1E+02 0.0022 25.0 7.0 65 321-385 85-155 (200)
455 PRK10564 maltose regulon perip 51.3 34 0.00074 30.1 4.9 38 272-309 259-296 (303)
456 KOG0686 COP9 signalosome, subu 50.9 2.1E+02 0.0046 26.6 14.2 58 140-197 152-215 (466)
457 COG5108 RPO41 Mitochondrial DN 50.5 94 0.002 30.8 8.0 47 275-321 33-81 (1117)
458 KOG4642 Chaperone-dependent E3 50.2 1.6E+02 0.0035 25.1 10.3 115 280-399 20-143 (284)
459 cd08323 CARD_APAF1 Caspase act 49.8 85 0.0018 21.7 6.6 60 129-188 19-78 (86)
460 COG5191 Uncharacterized conser 49.3 42 0.0009 29.6 5.0 78 302-381 104-184 (435)
461 PF12862 Apc5: Anaphase-promot 49.1 91 0.002 21.9 7.2 23 311-333 47-69 (94)
462 PF07720 TPR_3: Tetratricopept 48.6 40 0.00087 18.7 3.3 23 410-432 3-25 (36)
463 COG0735 Fur Fe2+/Zn2+ uptake r 47.6 1.3E+02 0.0028 23.3 7.3 19 315-333 30-48 (145)
464 PF12926 MOZART2: Mitotic-spin 47.4 93 0.002 21.5 7.2 42 225-266 29-70 (88)
465 COG2912 Uncharacterized conser 47.3 77 0.0017 27.5 6.3 62 377-439 185-246 (269)
466 PF09454 Vps23_core: Vps23 cor 47.0 37 0.00081 22.0 3.5 48 202-250 6-53 (65)
467 COG5108 RPO41 Mitochondrial DN 46.2 1.8E+02 0.0039 29.0 9.1 85 112-196 33-130 (1117)
468 cd07153 Fur_like Ferric uptake 46.0 60 0.0013 23.8 5.1 47 379-425 6-52 (116)
469 PF06957 COPI_C: Coatomer (COP 45.8 1.1E+02 0.0023 28.8 7.5 43 364-406 289-333 (422)
470 cd07153 Fur_like Ferric uptake 45.2 55 0.0012 24.0 4.8 48 15-62 5-52 (116)
471 PF14561 TPR_20: Tetratricopep 45.0 1.1E+02 0.0023 21.4 7.3 41 396-437 11-51 (90)
472 PF12069 DUF3549: Protein of u 45.0 2.4E+02 0.0052 25.6 12.7 133 144-278 172-306 (340)
473 cd08332 CARD_CASP2 Caspase act 44.9 78 0.0017 22.1 5.1 28 91-118 49-76 (90)
474 KOG4567 GTPase-activating prot 44.6 2.1E+02 0.0046 25.5 8.4 73 74-147 276-358 (370)
475 KOG2034 Vacuolar sorting prote 44.5 3.9E+02 0.0084 27.8 26.5 51 146-196 366-416 (911)
476 PF07575 Nucleopor_Nup85: Nup8 44.2 2.4E+02 0.0052 28.0 10.3 67 128-194 395-463 (566)
477 PRK14962 DNA polymerase III su 44.2 3.1E+02 0.0066 26.6 12.1 20 218-237 257-276 (472)
478 PF02184 HAT: HAT (Half-A-TPR) 44.0 53 0.0011 17.7 3.3 27 388-416 2-28 (32)
479 PF01475 FUR: Ferric uptake re 43.4 51 0.0011 24.4 4.4 49 14-62 11-59 (120)
480 cd08323 CARD_APAF1 Caspase act 43.0 1.1E+02 0.0024 21.2 5.6 32 59-90 42-73 (86)
481 KOG2297 Predicted translation 42.9 2.4E+02 0.0053 25.1 8.6 19 306-324 322-340 (412)
482 PF01475 FUR: Ferric uptake re 42.4 60 0.0013 24.1 4.6 48 377-424 11-58 (120)
483 PF04910 Tcf25: Transcriptiona 41.6 2.9E+02 0.0063 25.5 18.6 54 177-230 111-165 (360)
484 KOG4567 GTPase-activating prot 41.3 2.6E+02 0.0057 24.9 9.9 43 291-333 264-306 (370)
485 PF15469 Sec5: Exocyst complex 40.9 88 0.0019 25.4 5.8 104 342-448 58-179 (182)
486 KOG2659 LisH motif-containing 40.8 2.2E+02 0.0049 24.0 9.2 95 301-398 22-128 (228)
487 PF00244 14-3-3: 14-3-3 protei 40.3 2.4E+02 0.0051 24.2 10.4 58 174-231 6-64 (236)
488 PF04034 DUF367: Domain of unk 39.6 1.6E+02 0.0036 22.1 7.1 58 341-398 66-124 (127)
489 KOG2300 Uncharacterized conser 39.6 3.5E+02 0.0077 26.0 28.2 17 317-333 457-473 (629)
490 PF04090 RNA_pol_I_TF: RNA pol 39.5 86 0.0019 25.9 5.3 49 13-62 44-93 (199)
491 PF11123 DNA_Packaging_2: DNA 39.0 1.1E+02 0.0025 20.2 4.6 16 422-437 59-74 (82)
492 KOG0376 Serine-threonine phosp 38.8 82 0.0018 29.7 5.6 105 277-385 11-117 (476)
493 KOG0403 Neoplastic transformat 37.9 3.6E+02 0.0078 25.6 17.6 64 375-439 511-574 (645)
494 PHA00425 DNA packaging protein 36.7 1.3E+02 0.0028 20.2 5.4 53 320-382 14-66 (88)
495 COG4259 Uncharacterized protei 36.5 1.6E+02 0.0034 21.1 5.6 42 223-264 56-97 (121)
496 PF12968 DUF3856: Domain of Un 36.5 1.8E+02 0.0039 21.7 8.0 17 178-194 109-125 (144)
497 PF11768 DUF3312: Protein of u 36.1 4.3E+02 0.0092 25.9 11.1 116 276-394 414-544 (545)
498 PRK09857 putative transposase; 36.0 3E+02 0.0066 24.5 8.6 64 378-442 211-274 (292)
499 KOG0991 Replication factor C, 35.7 2.8E+02 0.0061 23.7 10.0 132 78-210 132-279 (333)
500 PF07064 RIC1: RIC1; InterPro 35.6 3E+02 0.0065 24.0 15.7 158 272-440 84-252 (258)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-73 Score=563.33 Aligned_cols=462 Identities=28% Similarity=0.472 Sum_probs=450.9
Q ss_pred CCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHH
Q 012108 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLD 84 (471)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 84 (471)
++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++..|++.|++++|.++|++|.+||..+|+.++.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhhHHHHHHHHHhCCCHHH
Q 012108 85 AFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEK 156 (471)
Q Consensus 85 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 156 (471)
+|++.|++++|+++|++|.. ++..+|+.++.+|++.|..+.+.+++..+ ..+|..++++|+++|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999964 48899999999999999999999998877 45899999999999999999999
Q ss_pred HHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 012108 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236 (471)
Q Consensus 157 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (471)
|.++|++|..+|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|++
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 012108 237 SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316 (471)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 316 (471)
|+..+++.|+.+|++.|++++|.++|++|..+|..+||+||.+|++.|+.++|.++|++|...|+.||..||+.++.+|+
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHH
Q 012108 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (471)
+.|..++|.++|+.|.++.|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|+.|+.+|...|+++.|..++
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999988789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCcceEEEEcCeEeEEeeCCCCCccc
Q 012108 397 KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
+++.+.+|. +..+|..|+.+|.+.|++++|.+++++|.+.|+.++++.+|+.+.+.+|.|.++|.+||+.
T Consensus 518 ~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~ 587 (697)
T PLN03081 518 EKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQS 587 (697)
T ss_pred HHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccH
Confidence 999999988 8899999999999999999999999999999999999999999999999999999999975
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-71 Score=559.73 Aligned_cols=464 Identities=34% Similarity=0.612 Sum_probs=452.1
Q ss_pred CcccCCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHH
Q 012108 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80 (471)
Q Consensus 1 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 80 (471)
|++.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|..||..+|+
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhhHHHHHHHHHhCC
Q 012108 81 SMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAG 152 (471)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~ 152 (471)
.+|.+|++.|++++|+++|++|. .||..+|+.++.+|++.|+++.|.++++.+ ..++..++++|+++|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999995 458899999999999999999999999998 4578999999999999999
Q ss_pred CHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 012108 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232 (471)
Q Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (471)
++++|.++|++|.++|..+||.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 5899999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012108 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312 (471)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 312 (471)
.|+.++..++++|+..|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHH
Q 012108 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG 392 (471)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 392 (471)
.+|++.|.+++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|...|+.+.+
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 99999999999999999999668999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCcceEEEEcCeEeEEeeCCCCCccc
Q 012108 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLAGGIGHLSN 467 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
+...+++.+..|. +...|..|.+.|.+.|+|++|.++.+.|++.|+.++++++|+.+.+.+|.|..+|.+||+.
T Consensus 677 e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 677 ELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred HHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999999999985
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.2e-66 Score=521.78 Aligned_cols=442 Identities=28% Similarity=0.432 Sum_probs=400.4
Q ss_pred CcccCCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHH
Q 012108 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80 (471)
Q Consensus 1 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 80 (471)
|++.|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|.+||..+||
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhH
Confidence 55678888888888888888888888888888888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhhHHHHHHHHHhCC
Q 012108 81 SMLDAFASCGQMDHAMKLIDLMP----LKDVTSFNIMISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAG 152 (471)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~ 152 (471)
.+|.+|++.|++++|+++|++|. .||..||+.++.+|++.|+++.|.+++..+ ..||..+|++|+.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 99999999999999999999996 458999999999999999999999999998 5589999999999999999
Q ss_pred CHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 012108 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232 (471)
Q Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (471)
++++|.++|++|..||..+||.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012108 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312 (471)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 312 (471)
.|+.|+..+++.|+..|++.|++++|.++|++|..+|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5999999999999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHH
Q 012108 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIG 392 (471)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 392 (471)
.+|++.|+.+.+.+++..+.+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|+.++.+|++.|+.++|
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHH
Confidence 999999999999999999988 688888777777777777777777777777777 57777777777777777777777
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCcccCcce
Q 012108 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN-DTGIVKTAGSS 446 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~ 446 (471)
.++|++|.+.|..||..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..++
T Consensus 574 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 7777777777777777777777777777777777777777776 46666654433
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-62 Score=488.45 Aligned_cols=444 Identities=17% Similarity=0.228 Sum_probs=418.9
Q ss_pred CCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhcc-CCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHH
Q 012108 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLD 84 (471)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 84 (471)
-.+|...|..++..+++.|++++|.++|++|.+.|+ +++...++.++..|.+.|..++|..+|+.|..|+..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456678899999999999999999999999999995 5677888899999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhCCCHHH
Q 012108 85 AFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKVP----AKDVVSWNSLILAYTNAGEMEK 156 (471)
Q Consensus 85 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 156 (471)
+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999974 489999999999999999999999999995 6899999999999999999999
Q ss_pred HHHHHHhc----cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 012108 157 AGEMFKKM----LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA--GNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230 (471)
Q Consensus 157 A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (471)
|.++|++| ..||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999 568999999999999999999999999999986 688999999999999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 012108 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV----KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI 306 (471)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 306 (471)
.+.|++|+..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999875 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHH
Q 012108 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSAC 383 (471)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~ 383 (471)
+|+.++.+|++.|++++|.++|++|.+ .|+.|+..+|+.||.+|++.|++++|.++|++| ++.||..+|+.++.+|
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998 699999999999999999999999999999998 7899999999999999
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cC-------------------CHHHHHHHHHHhhhCCCc
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS----CG-------------------QWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~m~~~~~~ 440 (471)
++.|++++|.+++++|.+.+..||..+|+.++..|.+ .+ ..++|..+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999876432 22 236799999999999999
Q ss_pred ccCcceEEEE
Q 012108 441 KTAGSSVIEV 450 (471)
Q Consensus 441 ~~~~~~~~~~ 450 (471)
|+..++...+
T Consensus 845 Pd~~T~~~vL 854 (1060)
T PLN03218 845 PTMEVLSQVL 854 (1060)
T ss_pred CCHHHHHHHH
Confidence 9987776555
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.4e-63 Score=489.38 Aligned_cols=434 Identities=19% Similarity=0.279 Sum_probs=408.0
Q ss_pred CCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccC----CCCcccHHHHH
Q 012108 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP----EKDIIAWNSML 83 (471)
Q Consensus 8 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li 83 (471)
||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 48999999999
Q ss_pred HHHHcCCCHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhhHHHHHHHHHhCCC
Q 012108 84 DAFASCGQMDHAMKLIDLMPL----KDVTSFNIMISGYARIGKIHSARYIFDKVP------AKDVVSWNSLILAYTNAGE 153 (471)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~ 153 (471)
.+|++.|++++|+++|+.|.. ||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999963 589999999999999999999999999993 5899999999999999999
Q ss_pred HHHHHHHHHhc----cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 012108 154 MEKAGEMFKKM----LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVY 229 (471)
Q Consensus 154 ~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (471)
+++|.++|+.| ..|+..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 012108 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ----VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305 (471)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 305 (471)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999885 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh----c-------------------CCHHHHHH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR----A-------------------RLLDRAIE 362 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~ 362 (471)
.||+.++.+|++.|+++.|.++|.+|.+ .|+.||..+|+.++..|.+ + +..++|..
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 9999999999999999999999999998 6999999999999876432 1 22467999
Q ss_pred HHHhC---CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 363 LIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 363 ~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
+|++| ++.||..||+.++.++++.+....+..+++.+...+..|+..+|++|++++.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 99999 799999999999988888999999999999888777777899999999998432 3689999999999999
Q ss_pred cccCc
Q 012108 440 VKTAG 444 (471)
Q Consensus 440 ~~~~~ 444 (471)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 99875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-56 Score=442.00 Aligned_cols=423 Identities=15% Similarity=0.159 Sum_probs=398.3
Q ss_pred CCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhc-cCCchhHHHHHHHHHhccCCHhHHHHHhcccC----CCCcccHH
Q 012108 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP----EKDIIAWN 80 (471)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 80 (471)
..++..+|+.+|..+.+.|++++|.++|+.|.+.+ +.||..+|+.++.++.+.++++.+.+++..|. .||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566799999999999999999999999999765 68999999999999999999999999999986 38999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhhHHHHHHHHHhCCCHHH
Q 012108 81 SMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV----PAKDVVSWNSLILAYTNAGEMEK 156 (471)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 156 (471)
.++.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|.++|++| ..||..+|+.++.++++.|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999 55889999999999999999999
Q ss_pred HHHHHHhc----cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 012108 157 AGEMFKKM----LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232 (471)
Q Consensus 157 A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (471)
+.+++..+ ..+|..+||.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99998887 45789999999999999999999999999996 46899999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 012108 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV----KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF 308 (471)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 308 (471)
.|+.||..+|+.++.+|++.|++++|.+++..+.+ +|..+|++|+.+|++.|++++|.++|++|. .||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence 99999999999999999999999999999987764 688999999999999999999999999997 4688999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHh
Q 012108 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPTESILGALLSACV 384 (471)
Q Consensus 309 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 384 (471)
+.+|.+|++.|+.++|.++|++|.+ .|+.||..+|+.++.+|.+.|..++|.++|+.| ++.|+..+|+.++.+|+
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999998 699999999999999999999999999999998 57899999999999999
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
+.|++++|.++++++ ...|+..+|..|+.+|...|+++.|..+++++.+.++.
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 999999999998765 56678999999999999999999999999999766543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-30 Score=269.05 Aligned_cols=418 Identities=14% Similarity=0.045 Sum_probs=207.2
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcC
Q 012108 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASC 89 (471)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 89 (471)
...++..+...|++++|.++++.+.+.. +++..++..+...+...|++++|...|+++.+ .+...+..+...+...
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 3444455555556666666555555432 33445555555555555666666655555432 2233444455555555
Q ss_pred CCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHh
Q 012108 90 GQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKK 163 (471)
Q Consensus 90 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 163 (471)
|++++|.+.|+++... +..++..+...+.+.|+.++|...++++.. .+...+..++..+.+.|++++|.++++.
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555554322 344555555555555555555555555421 2333444455555555555555555555
Q ss_pred cc---ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh
Q 012108 164 ML---VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240 (471)
Q Consensus 164 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (471)
+. ..+...|..+..++...|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+++.+.+.. +.+..
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 52 1234455555555555555555555555554432 2233344444555555555555555555555443 33444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 012108 241 ATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317 (471)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 317 (471)
.+..++..+...|++++|..+++.+.. .+...+..+...+...|++++|...|+++... .|+..++..+..++.+
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence 555555555555555555555544433 13334444445555555555555555555443 2333444444455555
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHH
Q 012108 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRV 395 (471)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 395 (471)
.|++++|.+.++++.+ ..+.+...+..+...|.+.|++++|.+.|+++ ..++++.++..+...+...|+ .+|+..
T Consensus 749 ~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 5555555555555544 23334444455555555555555555555544 122234444444444444444 445555
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
++++.+..|. ++..+..++.++...|++++|.++++++.+.++
T Consensus 826 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 826 AEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5555444444 444444445555555555555555555544443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-29 Score=262.43 Aligned_cols=422 Identities=14% Similarity=0.078 Sum_probs=355.8
Q ss_pred CCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHH
Q 012108 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSM 82 (471)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 82 (471)
.+++..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...|+++.+ .+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34566788888899999999999999999988765 34566788888899999999999999998764 356678888
Q ss_pred HHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCHHH
Q 012108 83 LDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVP---AKDVVSWNSLILAYTNAGEMEK 156 (471)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 156 (471)
...+.+.|+.++|...++++... +...+..++..+...|++++|..+++.+. +.+...|..+..++...|++++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999999887543 55677888899999999999999999884 3467788899999999999999
Q ss_pred HHHHHHhccc---cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 012108 157 AGEMFKKMLV---KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233 (471)
Q Consensus 157 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (471)
|.+.|+++.. .+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999998833 366778888999999999999999999988753 345678888888999999999999999999887
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012108 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311 (471)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 311 (471)
+ +.+...+..+...+...|++++|.+.|+++.. |+..++..++..+.+.|++++|.+.++++.... +.+...+..+
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 776 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTAL 776 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 6 66778888889999999999999999988654 455677788889999999999999999988763 5567788888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCc
Q 012108 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDL 389 (471)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 389 (471)
...|...|++++|.+.|+++.+ ..++++..+..+...+...|+ .+|+..++++ ...| +..++..+...+...|++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 8899999999999999999987 456678888999999999999 7899998887 3334 456777888888899999
Q ss_pred hHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
++|..+++++++.+|. ++.++..++.++.+.|++++|.+++++|+
T Consensus 854 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 854 DRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999998 89999999999999999999999999885
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.9e-22 Score=209.68 Aligned_cols=409 Identities=11% Similarity=-0.025 Sum_probs=326.4
Q ss_pred HHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CCc---ccHH-----------
Q 012108 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDI---IAWN----------- 80 (471)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~----------- 80 (471)
...+...|++++|...+++.++.. +.+..++..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667899999999999999875 34778889999999999999999999998764 322 1121
Q ss_pred -HHHHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCC
Q 012108 81 -SMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPA---KDVVSWNSLILAYTNAGE 153 (471)
Q Consensus 81 -~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 153 (471)
.....+.+.|++++|...|+++... +...+..+..++...|++++|++.|+++.. .+...+..+...|. .++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 2244677899999999999988754 566788889999999999999999999854 34556666777764 567
Q ss_pred HHHHHHHHHhccccC------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 012108 154 MEKAGEMFKKMLVKN------------VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221 (471)
Q Consensus 154 ~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 221 (471)
.++|..+++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 899999998874321 2235567778889999999999999998863 224556777888999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC----h---------hhHHHHHHHHHhcCChHH
Q 012108 222 TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD----V---------FCWNAMILGLALHGYGYA 288 (471)
Q Consensus 222 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~ 288 (471)
+|...++.+.+.. +.++..+..+...+...++.++|+..++++.... . ..+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999998765 5566666667777888999999999999876421 1 122345677889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 012108 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM- 367 (471)
Q Consensus 289 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 367 (471)
|..+++. .+++...+..+...+.+.|++++|++.|+++.+ ..+.++..+..++..|...|++++|.+.++.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999882 245666778888999999999999999999998 45567889999999999999999999999987
Q ss_pred CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCc-----hhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 368 PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD-----GELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 368 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
...| +..++..+..++...|++++|.++++++.+..+...+ ..+..++..+.+.|++++|++.|++...
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444 4556777888899999999999999999988765222 4666778999999999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=4.6e-22 Score=206.80 Aligned_cols=315 Identities=13% Similarity=0.074 Sum_probs=192.3
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhccCCchh-HHHHHHHHHhccCCHhHHHHHhcccCC--C-CcccHHHHHHHHHcC
Q 012108 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVY-VQTALLKMYGSLRCIDDAFKVFEKMPE--K-DIIAWNSMLDAFASC 89 (471)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 89 (471)
..+.+.+...|++++|.+.++.+.+.++ |+.. ....+.......|+.++|+..++++.+ | +...+..+...+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 3344567788999999999999987653 3332 111222222346899999999998875 3 455677888888999
Q ss_pred CCHHHHHHHHhcCCCCCh-----------------------hhH----------------------------------HH
Q 012108 90 GQMDHAMKLIDLMPLKDV-----------------------TSF----------------------------------NI 112 (471)
Q Consensus 90 g~~~~A~~~~~~~~~~~~-----------------------~~~----------------------------------~~ 112 (471)
|+.++|+..++++..... ..+ ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999998887632100 000 01
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHhccc--cCh---HHHH-----------
Q 012108 113 MISGYARIGKIHSARYIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--KNV---ITWN----------- 173 (471)
Q Consensus 113 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~----------- 173 (471)
...++...|++++|+..|++... .+...+..+..++.+.|++++|++.|++..+ |+. ..|.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 13345667888888888888743 3567788888888888999999888888743 211 1121
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012108 174 -TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252 (471)
Q Consensus 174 -~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (471)
.....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 22345678888888988888888763 3345566677788888888999988888888764 444555555554443 2
Q ss_pred CChHHHHHHHhcCCCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 012108 253 GSIEQSLEVFYKSQVKD------------VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320 (471)
Q Consensus 253 ~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 320 (471)
++.++|+.+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 33444444444332210 1112223334444555555555555544431 1123334444444555555
Q ss_pred HHHHHHHHHHhHH
Q 012108 321 VQEGCELFSRMEK 333 (471)
Q Consensus 321 ~~~a~~~~~~~~~ 333 (471)
+++|...++++.+
T Consensus 511 ~~~A~~~l~~al~ 523 (1157)
T PRK11447 511 RSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.5e-24 Score=189.94 Aligned_cols=364 Identities=12% Similarity=0.096 Sum_probs=306.3
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--hh-HHHHHHHH
Q 012108 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPAKDV--VS-WNSLILAY 148 (471)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~-~~~l~~~~ 148 (471)
...+|+.+.+.+-..|++++|+.+++.+.+. ....|..+..++...|+.+.|.+.|.+.+.-++ .. .+.+....
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 4468999999999999999999999988755 567899999999999999999999998865444 32 33455566
Q ss_pred HhCCCHHHHHHHHHhcccc---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHH
Q 012108 149 TNAGEMEKAGEMFKKMLVK---NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD-YLTVTSVLSACANLGSLETGA 224 (471)
Q Consensus 149 ~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~ 224 (471)
-..|++++|...|.+.+.. =..+|+.|...+..+|+...|+..|++..+. .|+ ...|-.|...|...+.++.|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHH
Confidence 6789999999988887443 3467899999999999999999999998874 454 356888888999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 012108 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--K-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301 (471)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 301 (471)
..|..+.... +.....+..+...|...|.++-|+..|++... | -+..|+.|..++-..|+..+|.+.+.+.....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~- 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC- 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-
Confidence 9998887764 55677888888899999999999999998765 3 35789999999999999999999999988752
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHH
Q 012108 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT-ESILGAL 379 (471)
Q Consensus 302 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 379 (471)
+-.....+.|...+...|.++.|..+|.+..+ -.+--....+.|...|.+.|++++|+..+++. .+.|+ ...|+.+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm 428 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM 428 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence 33456788899999999999999999999987 33334677889999999999999999999987 77886 4689999
Q ss_pred HHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCcc
Q 012108 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGS 445 (471)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 445 (471)
...|-..|+.+.|.+.+.+++..+|. -.+.+..|+..|...|+..+|+.-+++..+..+..+++.
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 99999999999999999999999998 788999999999999999999999999999888877654
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.6e-21 Score=190.59 Aligned_cols=418 Identities=13% Similarity=0.006 Sum_probs=284.0
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--C-CcccHHHHHHHHHcC
Q 012108 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--K-DIIAWNSMLDAFASC 89 (471)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 89 (471)
+......+...|+++.|...|++.++. .|+...|..+..+|.+.|++++|+..++...+ | +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334556677788888888888888765 45667788888888888888888888887664 3 445777788888888
Q ss_pred CCHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccc
Q 012108 90 GQMDHAMKLIDLMPLKD---VTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166 (471)
Q Consensus 90 g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 166 (471)
|++++|+..|......+ ......++..+........+...++.-. ++...+..+.. +......+.+..-+.....
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 88888887775543221 1111111211111111233333333221 22222222222 2221111111111222111
Q ss_pred cCh---HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 012108 167 KNV---ITWNTMVTG---YLRSQLYIEVVDLFDEMKAGN-VKP-DYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238 (471)
Q Consensus 167 ~~~---~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 238 (471)
.+. ..+..+... ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 111 111111111 123467899999999988764 233 34456777777888999999999999998875 445
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 315 (471)
...+..+...+...|++++|+..|+++.. .+..+|..+...+...|++++|+..|++..... +.+...+..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 67888888999999999999999887544 367788889999999999999999999988763 33456677788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-h-------HHHHHHHHHhhc
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTE-S-------ILGALLSACVIH 386 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~ 386 (471)
.+.|++++|+..|++..+ ..+.++..++.+...+...|++++|.+.|++. ...|+. . .++.....+...
T Consensus 444 ~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999887 45556788888999999999999999999886 333321 1 112222233346
Q ss_pred CCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 387 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
|++++|..+++++++.+|. +...+..++.++.+.|++++|+++|++..+...
T Consensus 522 ~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 8999999999999999888 777889999999999999999999998876543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.4e-22 Score=179.05 Aligned_cols=374 Identities=12% Similarity=0.112 Sum_probs=319.7
Q ss_pred chhHHHHHHHHHhccCCHhHHHHHhcccCC--C-CcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhH---HHHHHHH
Q 012108 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPE--K-DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSF---NIMISGY 117 (471)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~ 117 (471)
-..+|..+...+-..|++++|+.+++.+.+ | .+..|..+..++...|+.+.|...|....+-++..| ..+...+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 346788899999999999999999999875 3 567899999999999999999999988876655332 3345556
Q ss_pred HhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHhccccC---hHHHHHHHHHHHhcCCHHHHHHH
Q 012108 118 ARIGKIHSARYIFDKVPAKD---VVSWNSLILAYTNAGEMEKAGEMFKKMLVKN---VITWNTMVTGYLRSQLYIEVVDL 191 (471)
Q Consensus 118 ~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 191 (471)
...|++++|...+.+.++.+ ...|+.|...+-.+|++-.|+..|++.++-| ..+|-.|...|...+.+++|...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 67899999999999986543 3688999999999999999999999995543 36788899999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 012108 192 FDEMKAGNVKPD-YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--- 267 (471)
Q Consensus 192 ~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 267 (471)
|.+.... .|+ ...+..+...|...|.++.|+..|++.++.. +.-+..|+.|..++-..|++.+|...|.+...
T Consensus 275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 9988764 455 4567777778889999999999999999875 55688999999999999999999999998665
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 012108 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD-DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-LEHYG 345 (471)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 345 (471)
....+.+.|...+...|.+++|..+|....+- .|. ...++.|...|-++|++++|+..++++.+ +.|+ ...|+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~ 426 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALS 426 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHH
Confidence 35678899999999999999999999998874 555 35788899999999999999999999986 4565 78899
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 346 CMVDLLGRARLLDRAIELIEAM-PFEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
.+...|...|+.+.|.+.+.+. .+.|. ....+.|.+.|-..|+..+|+..++..++..|+ .+..|..++.++.-..+
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCD 505 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhc
Confidence 9999999999999999999887 66775 568899999999999999999999999999999 89999988887766555
Q ss_pred HHH
Q 012108 424 WEE 426 (471)
Q Consensus 424 ~~~ 426 (471)
|.+
T Consensus 506 w~D 508 (966)
T KOG4626|consen 506 WTD 508 (966)
T ss_pred ccc
Confidence 544
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=8.6e-22 Score=183.11 Aligned_cols=293 Identities=12% Similarity=0.062 Sum_probs=193.2
Q ss_pred HHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCh
Q 012108 147 AYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD---YLTVTSVLSACANLGSL 220 (471)
Q Consensus 147 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~ 220 (471)
.+...|++++|...|+++.. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455566666666666532 1334555566666666666666666666655321111 13345555566666666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--------hhhHHHHHHHHHhcCChHHHHHH
Q 012108 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD--------VFCWNAMILGLALHGYGYAALKL 292 (471)
Q Consensus 221 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~ 292 (471)
+.|..+|+.+.+.. +.+..++..++..+.+.|++++|++.++++...+ ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666665543 3445566666666666666666666666544311 11345566677778888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 012108 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP 371 (471)
Q Consensus 293 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 371 (471)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +.......+..++.+|...|++++|.+.++++ ...|
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88887652 234556777778888888888888888888762 21122456777888888888888888888887 4567
Q ss_pred CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCcccCc
Q 012108 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS---CGQWEEANRWRNMMNDTGIVKTAG 444 (471)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 444 (471)
+...+..++..+.+.|++++|..+++++.+..|+ ...+..++..+.. .|+.+++..++++|.+.++.++|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~--~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPS--LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC--HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7666777888888889999999999888887665 5566666666554 458888888888888877776664
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=8.1e-21 Score=176.61 Aligned_cols=290 Identities=13% Similarity=0.076 Sum_probs=209.4
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHhcccc-------ChHHHHHHHHHHHhcCCH
Q 012108 116 GYARIGKIHSARYIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK-------NVITWNTMVTGYLRSQLY 185 (471)
Q Consensus 116 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~ 185 (471)
.+...|++++|...|+++.. .+..++..+...+...|++++|..+++.+... ....+..++..|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455555556666655532 23345566666666677777777766666321 123566677777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCChHHHHHH
Q 012108 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN----PHATTALIDMYAKCGSIEQSLEV 261 (471)
Q Consensus 186 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~ 261 (471)
++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777642 34556677777777777888888877777776542221 12345567777788888888888
Q ss_pred HhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 012108 262 FYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT 338 (471)
Q Consensus 262 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 338 (471)
|+++.. .+...+..+...+.+.|++++|.+.++++...+......++..++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~ 279 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---Y 279 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 877654 2455677788889999999999999999887532222456788889999999999999999999872 4
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhh---cCCchHHHHHHHHHHHcCCCCCch
Q 012108 339 RKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESILGALLSACVI---HQDLEIGDRVAKMVCAKSNYLSDG 409 (471)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 409 (471)
|+...+..++..+.+.|++++|..+++++ ...|+..++..++..+.. .|+.+++..+++++.+.++.|+|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66667788999999999999999999876 567888888888877664 568999999999999877665665
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=9.3e-20 Score=177.64 Aligned_cols=344 Identities=8% Similarity=-0.049 Sum_probs=250.3
Q ss_pred ccCCHhHHHHHhcccCC------CCcccHHHHHHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHH
Q 012108 57 SLRCIDDAFKVFEKMPE------KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSAR 127 (471)
Q Consensus 57 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 127 (471)
++.+++.---.|..-.+ .+..-...++..+.+.|++++|+.+++..... +...+..++.+....|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 45566655555554432 12334555677778888888888888777543 5566677777777888888888
Q ss_pred HHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHhccc--c-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012108 128 YIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--K-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201 (471)
Q Consensus 128 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 201 (471)
..++++.. .+...+..+...+...|++++|.+.|++... | +...+..+...+...|++++|...++.+......
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~ 176 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP 176 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence 88888833 3456777778888888888888888888733 3 5667778888888888888888888877665322
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 012108 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMIL 278 (471)
Q Consensus 202 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 278 (471)
+...+.. +..+...|++++|...++.+.+....++......+...+...|++++|+..+++... .+...+..+..
T Consensus 177 -~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~ 254 (656)
T PRK15174 177 -RGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGL 254 (656)
T ss_pred -CHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2222222 234677888888888888887765334444555566778888888888888877554 35667778888
Q ss_pred HHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc
Q 012108 279 GLALHGYGYA----ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354 (471)
Q Consensus 279 ~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (471)
.+...|++++ |...+++..... +.+...+..+...+...|++++|...++++.+ ..+.+...+..+..++.+.
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC
Confidence 8888888885 788888888752 33556788888888899999999999998887 3344566777788888899
Q ss_pred CCHHHHHHHHHhC-CCCCCHhH-HHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 355 RLLDRAIELIEAM-PFEPTESI-LGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 355 g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
|++++|...++++ ...|+... +..+..++...|+.++|...|+++.+..|+
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999998887 34565433 344566788889999999999999888877
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1e-19 Score=177.36 Aligned_cols=349 Identities=9% Similarity=-0.022 Sum_probs=281.9
Q ss_pred HHcCCCHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHH
Q 012108 86 FASCGQMDHAMKLIDLMPLK------DVTSFNIMISGYARIGKIHSARYIFDKVPA---KDVVSWNSLILAYTNAGEMEK 156 (471)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 156 (471)
+.++.+++.-.-+|....++ +......++..+.+.|++++|..+++.... .+......++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 34566676666666655433 444566788889999999999999998833 355666777778888999999
Q ss_pred HHHHHHhccc--c-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 012108 157 AGEMFKKMLV--K-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233 (471)
Q Consensus 157 A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (471)
|.+.|+++.. | +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999933 3 56788889999999999999999999998852 334567778888999999999999999988776
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012108 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK----DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309 (471)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 309 (471)
. +.+...+..+ ..+...|++++|+..++.+... +...+..+...+...|++++|+..++++.... +.+...+.
T Consensus 174 ~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 V-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred C-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 5 3344444444 3478899999999999886553 23344556778899999999999999999864 34567788
Q ss_pred HHHHHHhccCcHHH----HHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 012108 310 GLLSACSHAGLVQE----GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSAC 383 (471)
Q Consensus 310 ~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 383 (471)
.+...+...|++++ |...|+++.+ ..+.+...+..+...+.+.|++++|...+++. ...| +...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88999999999986 8999999987 34557888999999999999999999999988 4445 456777888999
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
...|++++|...++++.+.+|. +...+..++.++...|++++|...|++..+..+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999999999999888 66666667889999999999999999998876654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3.5e-19 Score=177.36 Aligned_cols=190 Identities=6% Similarity=-0.084 Sum_probs=96.2
Q ss_pred HhcCChHHHHHHHhcCCCCC---h-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHH
Q 012108 250 AKCGSIEQSLEVFYKSQVKD---V-FCWNAMILGLALHGYGYAALKLLGEMNDSCVKA---DDITFIGLLSACSHAGLVQ 322 (471)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~ 322 (471)
...|++++|+..|+++...+ + ..-..+..+|...|++++|+..|+++....... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 34455555555555544321 1 111123445555555666666555554431100 0123334444555556666
Q ss_pred HHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcC
Q 012108 323 EGCELFSRMEKDFG----------VTRK---LEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQ 387 (471)
Q Consensus 323 ~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g 387 (471)
+|.++++.+..... -.|+ ...+..+...+...|++++|++.++++ . .+.+...+..+...+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 66666555554100 0011 122334455555666666666666655 2 2223445555555666666
Q ss_pred CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
++++|++.++++++..|+ +...+..++..+.+.|++++|..+++++.+..+.
T Consensus 408 ~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 408 WPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred CHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 666666666666666665 5556666666666666666666666666554443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=8.3e-19 Score=174.70 Aligned_cols=397 Identities=12% Similarity=0.004 Sum_probs=304.1
Q ss_pred CcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--C-CcccHHHHHHH
Q 012108 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--K-DIIAWNSMLDA 85 (471)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 85 (471)
++....-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..++++... | +...+..+..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44455566778889999999999999998643 44555789999999999999999999999653 3 45677888899
Q ss_pred HHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHH
Q 012108 86 FASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPA--K-DVVSWNSLILAYTNAGEMEKAGE 159 (471)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~ 159 (471)
+...|++++|+..+++.... +.. +..+..++...|+.++|...++++.+ | +...+..+..++...+..++|.+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 99999999999999998654 556 88889999999999999999999944 3 45566778888889999999999
Q ss_pred HHHhccccChH--------HHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHHcc
Q 012108 160 MFKKMLVKNVI--------TWNTMVTGYL-----RSQLY---IEVVDLFDEMKAG-NVKPDYL-TVT----SVLSACANL 217 (471)
Q Consensus 160 ~~~~~~~~~~~--------~~~~l~~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~l~~~~~~~ 217 (471)
.++.... ++. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 9998754 211 2222333322 22334 7788899988854 2233322 111 113445677
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-------hhhHHHHHHHHHhcCChHHHH
Q 012108 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-------VFCWNAMILGLALHGYGYAAL 290 (471)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~ 290 (471)
|+.++|...|+.+.+.+.+........+..+|...|++++|+..|+++...+ ......+..++...|++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999887632122233336789999999999999999865532 234566777889999999999
Q ss_pred HHHHHHHhCCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 012108 291 KLLGEMNDSCV-----------KADD---ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356 (471)
Q Consensus 291 ~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (471)
.+++.+..... .|+. ..+..+...+...|+.++|++.++++.. ..+.+...+..+...+...|+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 99999987521 1232 2455677788899999999999999987 566678899999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhH
Q 012108 357 LDRAIELIEAM-PFEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411 (471)
Q Consensus 357 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (471)
+++|++.+++. ...|+ ...+..++..+...|++++|+.+++++++..|+ ++.+.
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd-~~~~~ 464 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ-DPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 99999999988 45565 567777778889999999999999999999998 65433
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=3.2e-18 Score=170.82 Aligned_cols=422 Identities=10% Similarity=0.020 Sum_probs=309.2
Q ss_pred cccHHHH-HHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhc-cCCHhHHHHHhcccCCCCcccHHHHHHHHH
Q 012108 10 NYSFPLL-LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS-LRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87 (471)
Q Consensus 10 ~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 87 (471)
+...... .+.|...|++++|..++.++.+.++ .+......+...|.. .++ +++..+++...+.++..+..+...+.
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi 258 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALA 258 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHH
Confidence 4434444 7889999999999999999999873 455557777778887 466 88888877655568888999999999
Q ss_pred cCCCHHHHHHHHhcCCCC-----Chh------------------------------hHHHHHHHHHhcCCHHHHHHHHhh
Q 012108 88 SCGQMDHAMKLIDLMPLK-----DVT------------------------------SFNIMISGYARIGKIHSARYIFDK 132 (471)
Q Consensus 88 ~~g~~~~A~~~~~~~~~~-----~~~------------------------------~~~~l~~~~~~~g~~~~a~~~~~~ 132 (471)
+.|+.++|.++++++... +.. .....+..+.+.++++.++++...
T Consensus 259 ~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (987)
T PRK09782 259 YRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLAT 338 (987)
T ss_pred HCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999999999999888622 111 111225556677777766666432
Q ss_pred cC--------------------------------CCChhhHHHHHHHHHhCCCHHHHHHHHHhccc-c-----ChHHHHH
Q 012108 133 VP--------------------------------AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV-K-----NVITWNT 174 (471)
Q Consensus 133 ~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~ 174 (471)
-+ +.+......+.-...+.|+.++|.++|+.... + +....+.
T Consensus 339 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 418 (987)
T PRK09782 339 LPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMAR 418 (987)
T ss_pred CCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHH
Confidence 20 11222223333345678889999999988843 2 2334556
Q ss_pred HHHHHHhcCC---HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHccCChHHHHH
Q 012108 175 MVTGYLRSQL---YIEVVDL----------------------FDEMKAG-NV-KP--DYLTVTSVLSACANLGSLETGAR 225 (471)
Q Consensus 175 l~~~~~~~~~---~~~a~~~----------------------~~~m~~~-g~-~p--~~~~~~~l~~~~~~~~~~~~a~~ 225 (471)
++..|.+.+. ..++..+ ++..... +. ++ +...|..+..++.. ++.++|..
T Consensus 419 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~ 497 (987)
T PRK09782 419 LASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALY 497 (987)
T ss_pred HHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHH
Confidence 7777777665 3333332 1111111 11 23 45566666666665 78888999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 012108 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303 (471)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 303 (471)
.+....... |+......+...+...|++++|+..|+++.. ++...+..+...+.+.|++++|...+++..+.+ ++
T Consensus 498 a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 498 AWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 888877664 5554444556666789999999999987654 344556777888899999999999999998764 22
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 012108 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLS 381 (471)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 381 (471)
+...+..+.......|++++|...+++..+ ..|+...+..+..++.+.|++++|...+++. ...| +...+..+..
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 333344444455567999999999999987 3457888999999999999999999999988 4455 5667888888
Q ss_pred HHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
++...|++++|+..++++++..|. ++..+..++.++...|++++|...+++..+..+..
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999 99999999999999999999999999998877643
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=9.3e-18 Score=167.50 Aligned_cols=199 Identities=8% Similarity=-0.026 Sum_probs=157.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHH--HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM--ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315 (471)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 315 (471)
+...+..+..++.. ++.++|+..+.+.....+..+..+ ...+...|++++|...|+++... +|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 56667777777766 778888887766444222233344 44456899999999999997664 45555666777888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCCchHHHH
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESILGALLSACVIHQDLEIGDR 394 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 394 (471)
.+.|+.++|...++.+.+ ..+++...+..+.....+.|++++|...+++. ...|+...+..+..++.+.|++++|+.
T Consensus 553 l~~Gd~~eA~~~l~qAL~--l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQ--RGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 899999999999999987 22334444444444555669999999999988 567888899999999999999999999
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 395 VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
.++++++..|. ++..+..++.++...|++++|+..+++..+..+..+
T Consensus 631 ~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 631 DLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999 999999999999999999999999999988776544
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=3.2e-17 Score=160.43 Aligned_cols=421 Identities=11% Similarity=0.004 Sum_probs=306.1
Q ss_pred HHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHH-HH--HHHHHcCCCHHHH
Q 012108 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN-SM--LDAFASCGQMDHA 95 (471)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~l--i~~~~~~g~~~~A 95 (471)
...+.|+++.|...+.+.++..+.....++ .++..+...|+.++|+..+++...|+...+. .+ ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 355889999999999999987633222344 8888888999999999999999877554443 33 4577888999999
Q ss_pred HHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--hhHHHHHHHHHhCCCHHHHHHHHHhccc--c-
Q 012108 96 MKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPAKDV--VSWNSLILAYTNAGEMEKAGEMFKKMLV--K- 167 (471)
Q Consensus 96 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~- 167 (471)
+++|+++.+. ++..+..++..+...++.++|++.++++.+.++ ..+..++..+...++..+|++.++++.. |
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 9999999755 667777888899999999999999999976544 3444444444446667669999999933 4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------HHHHHHHH-H----ccCCh---HHHHHHHHHHHHc
Q 012108 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT------VTSVLSAC-A----NLGSL---ETGARIHVYATDN 233 (471)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------~~~l~~~~-~----~~~~~---~~a~~~~~~~~~~ 233 (471)
+...+..+..++.+.|-...|+++..+-... ..+...- ....++.- . ...++ +.|..-++.+...
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 5677788888999999999998876653321 1111111 11111111 0 11223 3344445554442
Q ss_pred -CC-CCchh----HHHHHHHHHHhcCChHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---
Q 012108 234 -GL-ASNPH----ATTALIDMYAKCGSIEQSLEVFYKSQVK----DVFCWNAMILGLALHGYGYAALKLLGEMNDSC--- 300 (471)
Q Consensus 234 -~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 300 (471)
+- |+... ...-.+-++...|+..++++.|+.+..+ ...+-..+..+|...+++++|..++..+....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 11 22211 2223455677889999999999998853 34566778899999999999999999986642
Q ss_pred --CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC----------CCC---hhHHHHHHHHHhhcCCHHHHHHHHH
Q 012108 301 --VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV----------TRK---LEHYGCMVDLLGRARLLDRAIELIE 365 (471)
Q Consensus 301 --~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 365 (471)
..++......|..++...+++++|..+++++.+.... .|+ ...+..++..+...|++.+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1223344577889999999999999999999872110 122 2334556777889999999999999
Q ss_pred hC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 366 AM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 366 ~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
++ .-+-|......+...+...|.+.+|+..++.+....|+ +..+....+.++...|+|.+|..+.+.+....+...
T Consensus 441 ~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 441 DLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 98 33447788889999999999999999999999999999 899999999999999999999988877766655443
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.5e-17 Score=162.85 Aligned_cols=393 Identities=11% Similarity=-0.005 Sum_probs=279.2
Q ss_pred CCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCC---CcccHHH
Q 012108 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK---DIIAWNS 81 (471)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 81 (471)
.+.|+...|..+..++...|++++|.+.++..++.. +.+..++..+..+|...|++++|+.-|...... +......
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 356788889999999999999999999999999875 346678888999999999999999887654321 1111112
Q ss_pred HHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHH---HhCCCHH
Q 012108 82 MLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDV---VSWNSLILAY---TNAGEME 155 (471)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~---~~~~~~~ 155 (471)
++..+........+...++.-.. +...+..+.. +...........-+....+.+. ..+..+...+ ...++++
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence 22211111122334444433222 2223333322 2222222222222222222111 1111111111 2347899
Q ss_pred HHHHHHHhcccc------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHH
Q 012108 156 KAGEMFKKMLVK------NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD-YLTVTSVLSACANLGSLETGARIHV 228 (471)
Q Consensus 156 ~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (471)
+|.+.|++.... ....|+.+...+...|++++|+..|++.++. .|+ ...|..+...+...|++++|...++
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999988532 4467888888999999999999999999875 454 5577788888899999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 012108 229 YATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD 305 (471)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 305 (471)
.+.+.. +.+..++..+...+...|++++|+..|++... .+...+..+...+.+.|++++|+..|++.... .+.+.
T Consensus 390 ~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~ 467 (615)
T TIGR00990 390 KALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAP 467 (615)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCh
Confidence 998875 66788999999999999999999999988654 35677888889999999999999999999875 23356
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL------EHYGCMVDLLGRARLLDRAIELIEAM-PFEPT-ESILG 377 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 377 (471)
..+..+...+...|++++|.+.|++..+. .-..+. ..++.....+...|++++|.+++++. ...|+ ...+.
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 78888999999999999999999998872 111111 11222233344579999999999986 55554 45788
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 378 ALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.+...+...|++++|.+.|+++.+..+.
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999988765
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.5e-17 Score=154.77 Aligned_cols=433 Identities=11% Similarity=0.042 Sum_probs=324.7
Q ss_pred CCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCc--hhHHHHHHHHHhccCCHhHHHHHhcccCC--CCc--ccHH
Q 012108 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH--VYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDI--IAWN 80 (471)
Q Consensus 7 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~ 80 (471)
+-|++..+.|.+.+.-.|+++.+..+.+-+......-. ...|-.+.++|...|++++|...|....+ ++. ..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 34667888888888899999999999998887652211 23477788999999999999999988765 333 3455
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcC----CHHHHHHHHhhcCCC---ChhhHHHHHHHHHh
Q 012108 81 SMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIG----KIHSARYIFDKVPAK---DVVSWNSLILAYTN 150 (471)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 150 (471)
-+...+.+.|+++.+.-.|+.+.+. +..+...+...|+..+ ..+.|..++.+..++ |...|..+...+-.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 6788999999999999999988654 5667777777777775 567788888887554 45566666655554
Q ss_pred CCCHHHHHHHHHhc--------cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHH
Q 012108 151 AGEMEKAGEMFKKM--------LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG---NVKPDY------LTVTSVLSA 213 (471)
Q Consensus 151 ~~~~~~A~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~------~~~~~l~~~ 213 (471)
.+-+ .++..|... ...-+...|.+.......|++..|...|...+.. ...+|. .+-..+...
T Consensus 427 ~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 4433 335555443 2346788999999999999999999999988654 122333 122335556
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHH
Q 012108 214 CANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAAL 290 (471)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 290 (471)
.-..++.+.|.+.|..+.+.. |.-+..|..++-.....+...+|...+..+.. .++..++.+...+.+...+..|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 667889999999999998864 33344444444334445778889888887655 57788888888999999999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCH
Q 012108 291 KLLGEMNDSC-VKADDITFIGLLSACSH------------AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357 (471)
Q Consensus 291 ~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (471)
+-|....+.- ..+|..+...|.+.|.+ .+..++|+++|.++.+ ..+.|...-|-+.-+++..|++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCc
Confidence 8777766542 23566666667775543 2457889999999987 5677888889999999999999
Q ss_pred HHHHHHHHhCC--CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 358 DRAIELIEAMP--FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS-NYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 358 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
.+|..+|.+.. ......+|..+..+|...|++..|++.|+...+.. +.-++.+...|++++.+.|.+.+|.+.....
T Consensus 663 ~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 663 SEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred hHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999882 23456789999999999999999999999887653 4436888999999999999999999999888
Q ss_pred hhCCCcccC
Q 012108 435 NDTGIVKTA 443 (471)
Q Consensus 435 ~~~~~~~~~ 443 (471)
....+..+.
T Consensus 743 ~~~~p~~~~ 751 (1018)
T KOG2002|consen 743 RHLAPSNTS 751 (1018)
T ss_pred HHhCCccch
Confidence 776665443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.5e-15 Score=148.91 Aligned_cols=386 Identities=11% Similarity=0.057 Sum_probs=281.8
Q ss_pred HHHHhccCCHhHHHHHhcccCC--CCcc-cHHHHHHHHHcCCCHHHHHHHHhcCCCC-ChhhHHHH--HHHHHhcCCHHH
Q 012108 52 LKMYGSLRCIDDAFKVFEKMPE--KDII-AWNSMLDAFASCGQMDHAMKLIDLMPLK-DVTSFNIM--ISGYARIGKIHS 125 (471)
Q Consensus 52 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l--~~~~~~~g~~~~ 125 (471)
+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++...+ +...+..+ +..+...|++++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445688999999999999886 4321 2338888889999999999999999866 33334444 668888999999
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCC
Q 012108 126 ARYIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR--SQLYIEVVDLFDEMKAGNV 200 (471)
Q Consensus 126 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~ 200 (471)
|.++|+++.+ .++..+..++..+...++.++|++.++++.+.++.....++.++.. .++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 9999999954 3466777888899999999999999999965544333334444444 566666999999999874
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH------HHHHHHHH---H--hcCC---hHHHHHHHhcCC
Q 012108 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA------TTALIDMY---A--KCGS---IEQSLEVFYKSQ 266 (471)
Q Consensus 201 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~--~~~~---~~~a~~~~~~~~ 266 (471)
+-+...+..+..++.+.|-...|.++..+-.+. +.+.... ...+++.- . ...+ .+.|+.-++.+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 335666777888889999988888776643211 1111100 01111100 0 1111 233444444433
Q ss_pred C-----CCh-hh----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 012108 267 V-----KDV-FC----WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336 (471)
Q Consensus 267 ~-----~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 336 (471)
. |.. .. ..-.+-++...|++.++++.|+.+...|.+....+-..+..+|...+++++|+.+++.+....+
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 2 211 11 2234567888999999999999999988765667888899999999999999999999977322
Q ss_pred ----CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC---------------CH-hHHHHHHHHHhhcCCchHHHHH
Q 012108 337 ----VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPF-EP---------------TE-SILGALLSACVIHQDLEIGDRV 395 (471)
Q Consensus 337 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p---------------~~-~~~~~l~~~~~~~g~~~~a~~~ 395 (471)
.+++......|.-+|...+++++|..+++++.- .| |- ..+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 123444457888999999999999999998821 22 21 2344566778899999999999
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
++++....|. |+.....++..+...|.+.+|...++......+.
T Consensus 439 le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 439 LEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 9999999999 9999999999999999999999999887766544
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=7.4e-14 Score=126.30 Aligned_cols=423 Identities=11% Similarity=0.029 Sum_probs=308.7
Q ss_pred HHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccC-----------------------
Q 012108 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP----------------------- 72 (471)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------- 72 (471)
|.-++++...++.|..++....+. ++-+..+|.+-...--..|+.+...+++.+..
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 444566666677777777776655 45566666666665566666666666655432
Q ss_pred ----------------C------CCcccHHHHHHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHH
Q 012108 73 ----------------E------KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSAR 127 (471)
Q Consensus 73 ----------------~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 127 (471)
. .-..+|..-...|.+.+.++-|..+|....+- +...|...+..--..|..+...
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 0 01124444445555555555555555555433 3344555555555566777777
Q ss_pred HHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHhcc---ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012108 128 YIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKML---VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201 (471)
Q Consensus 128 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 201 (471)
.+|+++.. .....|.....-+...|++..|+.++.... ..+...|-.-+.....+.+++.|..+|.+.... .
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 77777632 344556666677777888888888888873 235667877888888888888888888887663 5
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHH
Q 012108 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--K-DVFCWNAMIL 278 (471)
Q Consensus 202 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 278 (471)
|+...|.--+..---.++.++|.+++++.++.- +.-...|..+.+.+-+.++++.|.+.|....+ | .+..|-.|..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 666666655555556788888999888888763 55567788888888888999999888877665 3 4567777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHH
Q 012108 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358 (471)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (471)
.--+.|.+-+|..+|++.+-.+ +-+...|...|+.-.+.|+.+.|..+..++.+ .++.+...|..-|.+..+.++-.
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 7788889999999999888764 44677888888888899999999999888887 57777888888888888888877
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 359 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
+....+++.. .|+.+...+...+.....++.|.+.|.++.+.+|+ +..+|.-+...+.+.|.-++-.+++.+.....
T Consensus 805 ks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 805 KSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 7777777765 46666777788888899999999999999999999 99999999999999999999999999988776
Q ss_pred CcccCcceEEEE
Q 012108 439 IVKTAGSSVIEV 450 (471)
Q Consensus 439 ~~~~~~~~~~~~ 450 (471)
+. .+..|..+
T Consensus 882 P~--hG~~W~av 891 (913)
T KOG0495|consen 882 PT--HGELWQAV 891 (913)
T ss_pred CC--CCcHHHHH
Confidence 54 44455444
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.9e-14 Score=122.62 Aligned_cols=413 Identities=14% Similarity=0.114 Sum_probs=291.9
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhc--cCCHh-HHHHHhcccCC---CCcccHHHHHHH
Q 012108 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS--LRCID-DAFKVFEKMPE---KDIIAWNSMLDA 85 (471)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~-~A~~~~~~~~~---~~~~~~~~li~~ 85 (471)
+=+.|++. ..+|.+..+.-+|+.|.+.|.+.+..+...|++.-+- ..+.- .-++-|-.|.. .+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------ 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------ 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence 44555554 4568899999999999999988888887777664443 22222 11223333432 444555
Q ss_pred HHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCCCHHHHHHHH
Q 012108 86 FASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGEMF 161 (471)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~ 161 (471)
+.|.+.+ ++-+...+.+.++..+|.++++--..+.|.+++++... .+..+||.+|.+-.-..+ .+++
T Consensus 191 --K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv 261 (625)
T KOG4422|consen 191 --KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLV 261 (625)
T ss_pred --ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHH
Confidence 3555544 44444555778999999999999999999999998843 467788888876554444 4555
Q ss_pred Hhc----cccChHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHH
Q 012108 162 KKM----LVKNVITWNTMVTGYLRSQLYIE----VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET-GARIHVYATD 232 (471)
Q Consensus 162 ~~~----~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 232 (471)
.+| ..||..++|+++.+..+.|+++. |++++.+|++-|+.|.-.+|..+|..+++.++..+ +..++.++..
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 565 77899999999999999998765 56788999999999999999999999999888755 4445554442
Q ss_pred ----cCC----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--------C---ChhhHHHHHHHHHhcCChHHHHHHH
Q 012108 233 ----NGL----ASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--------K---DVFCWNAMILGLALHGYGYAALKLL 293 (471)
Q Consensus 233 ----~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~ 293 (471)
..+ +.+...|..-+..|.+..+.+-|.++..-... + ...-|..+....|+....+.-...|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 33556677888888899998888876543322 1 2234667788889999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcC-CH--------HH-----
Q 012108 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR-LL--------DR----- 359 (471)
Q Consensus 294 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~----- 359 (471)
+.|.-.-+-|+..+...++++....+.++-.-.+|..+.. +|...+......++..+++.. ++ ..
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 9999888889999999999999999999999899988887 676655555555555555443 11 11
Q ss_pred HHHHHHh-------C-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC-C---CchhHHHHHHHHHhcCCHHHH
Q 012108 360 AIELIEA-------M-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY-L---SDGELMMFANLYASCGQWEEA 427 (471)
Q Consensus 360 A~~~~~~-------~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~A 427 (471)
|..+++. + .........+..+-.+.+.|..++|.++|....+.+.+ | .......+.+.-.+..+...|
T Consensus 501 aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1112211 1 12334445556666678999999999999988665432 2 233344566667778889999
Q ss_pred HHHHHHhhhCCCcc
Q 012108 428 NRWRNMMNDTGIVK 441 (471)
Q Consensus 428 ~~~~~~m~~~~~~~ 441 (471)
...++-|...+...
T Consensus 581 ~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 581 IEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHHHHHcCchh
Confidence 99999887665543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.7e-16 Score=135.96 Aligned_cols=404 Identities=14% Similarity=0.102 Sum_probs=271.4
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHhccCCchhH-HHHHHHHHhccCCHhHHHHHhcccCC--CC------cccHHHHHHH
Q 012108 15 LLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYV-QTALLKMYGSLRCIDDAFKVFEKMPE--KD------IIAWNSMLDA 85 (471)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~ 85 (471)
.|.+-|.......+|+..++.+.+...-|+... -..+...+.+.+.+.+|+++++...+ |+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344556667778889988888888776665543 23455677788888888888876553 22 2234445556
Q ss_pred HHcCCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC----------------CChhhHHH----
Q 012108 86 FASCGQMDHAMKLIDLMPLK--DVTSFNIMISGYARIGKIHSARYIFDKVPA----------------KDVVSWNS---- 143 (471)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~---- 143 (471)
+.+.|.++.|+..|+..... +..+-..++-++..-|+.++..+.|.+++. |+....+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 78888888888888876543 444444455555567888888888887721 11111111
Q ss_pred -HHHHHHhCC--CHHHHHHHHHhc----cccCh-------------HHHH--------HHHHHHHhcCCHHHHHHHHHHH
Q 012108 144 -LILAYTNAG--EMEKAGEMFKKM----LVKNV-------------ITWN--------TMVTGYLRSQLYIEVVDLFDEM 195 (471)
Q Consensus 144 -l~~~~~~~~--~~~~A~~~~~~~----~~~~~-------------~~~~--------~l~~~~~~~~~~~~a~~~~~~m 195 (471)
.+.-+-+.+ +.++++-.--++ +.|+- ..+. .-...+.++|+++.|.++++-.
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 111111111 112222111111 11110 0011 1123466777777777776665
Q ss_pred HhCCCCCCHHH-------------------------------HH-----HHHHHHHccCChHHHHHHHHHHHHcCCCCch
Q 012108 196 KAGNVKPDYLT-------------------------------VT-----SVLSACANLGSLETGARIHVYATDNGLASNP 239 (471)
Q Consensus 196 ~~~g~~p~~~~-------------------------------~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 239 (471)
.+..-+.-+.. |+ .-.+.....|++++|.+.|++.+...-....
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 44321111111 11 0011112357888999999888766533333
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 012108 240 HATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316 (471)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 316 (471)
..|+ +.-.+-..|++++|+++|-++.. .+..+...+...|-...++.+|++++.+.... ++.|+....-|...|-
T Consensus 526 alfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 526 ALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 3333 45567788999999999876543 56677777888888899999999999887765 5667788888999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHh-hcCCchHHHH
Q 012108 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESILGALLSACV-IHQDLEIGDR 394 (471)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~g~~~~a~~ 394 (471)
+.|+-.+|.+.+-.--. -++.+..+..-|...|....-+++|+.+|++. -++|+..-|..++..|. +.|++++|..
T Consensus 604 qegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999887766655 56778888888999999999999999999998 58899999998887765 6899999999
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 395 VAKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
+++.....-|. |..++.-|.+.+...|-
T Consensus 682 ~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 99999999999 99999999999888775
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.6e-14 Score=136.22 Aligned_cols=408 Identities=14% Similarity=0.072 Sum_probs=201.7
Q ss_pred hccchhHHHHHHHHHHHhcc--CCchhHHHHHHHHHhccCCHhHHHHHhcccCC--------------------------
Q 012108 22 ILSSSCIGLMLHGQTIKTGF--CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE-------------------------- 73 (471)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------- 73 (471)
..|++..|+.+|...+...+ +||+. -.+..++.+.|+.+.|+..|++..+
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 45677777777777654432 23332 2222444455666665555555433
Q ss_pred --------------CCcccHHHHHHHHHcCCCHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 012108 74 --------------KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK------DVTSFNIMISGYARIGKIHSARYIFDKV 133 (471)
Q Consensus 74 --------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 133 (471)
.++...+.|.+-|.-.|+++.++.+...+... -...|..+.++|-..|++++|...|-+.
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 24445555555556666666666665555433 1234666666666777777777666666
Q ss_pred CCC--C--hhhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCC
Q 012108 134 PAK--D--VVSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYLRSQ----LYIEVVDLFDEMKAGNVKP 202 (471)
Q Consensus 134 ~~~--~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~g~~p 202 (471)
... | ...+..+...|.+.|+++.+...|+.+.+ .+..+...|...|...+ ..+.|..++.+..+.- +.
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 432 2 22334456666677777777776666622 23444555555555443 3445555555544432 33
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHH----HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------Ch-
Q 012108 203 DYLTVTSVLSACANLGSLETGARIHVYAT----DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-------DV- 270 (471)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~- 270 (471)
|...|..+...+... +...+...|..+. ..+-++.+...|.+...+...|++.+|...|...... +.
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 444555554444333 3333344444432 3444566677777777777777777777776543321 11
Q ss_pred -----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 012108 271 -----FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI-TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY 344 (471)
Q Consensus 271 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (471)
.+--.+...+-..++++.|.+.|...... .|.-. .|..++......++..+|...++.+.. ....++..+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~ar 567 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNAR 567 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHH
Confidence 11222334444455566666666665553 33322 222232222233455555555555554 333334444
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHhh------------cCCchHHHHHHHHHHHcCCCCCc
Q 012108 345 GCMVDLLGRARLLDRAIELIEAM----PFEPTESILGALLSACVI------------HQDLEIGDRVAKMVCAKSNYLSD 408 (471)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~ 408 (471)
..+...+.+...+..|.+-|..+ ...+|..+..+|.+.|.. .+..++|+++|.+++..+|. |.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NM 646 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hh
Confidence 44444444444444444322221 122344444444443321 11233444455555555544 44
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 409 GELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
..-+-++-+++..|++.+|..+|.++.+..
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 444444444555555555555555444433
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.6e-17 Score=146.41 Aligned_cols=257 Identities=14% Similarity=0.074 Sum_probs=112.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012108 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT-SVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252 (471)
Q Consensus 174 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (471)
.+...+.+.|++++|++++++......+|+...|. .+...+...++++.|...++.+...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34667778888888888886554433234444443 34445566788888888888888765 3466667777777 688
Q ss_pred CChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 012108 253 GSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMNDSC-VKADDITFIGLLSACSHAGLVQEGCELFS 329 (471)
Q Consensus 253 ~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 329 (471)
+++++|.+++.+..+ +++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876544 456677788888889999999999999977542 34566778888889999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCC
Q 012108 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407 (471)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 407 (471)
++.+ -.|.+......++..+...|+.+++.++++.. ..+.|+..+..+..++...|+.++|...+++..+.+|. |
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d 247 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-D 247 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc-c
Confidence 9998 34456888889999999999999988888776 22456677888999999999999999999999999999 9
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 408 DGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
+.....++.++...|+.++|.++..+..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999988764
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.8e-14 Score=123.25 Aligned_cols=214 Identities=14% Similarity=0.076 Sum_probs=172.8
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHH
Q 012108 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALK 291 (471)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 291 (471)
.-.|+.-.+..-|+..++.. +.+...|-.+...|....+.++....|++... .|+.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34678888888888888876 33444477788889999999999999987654 577888888888888899999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 012108 292 LLGEMNDSCVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF 369 (471)
Q Consensus 292 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 369 (471)
=|++.+.. .| +...|..+.-+..+.++++++...|++..+ .++.-+..|+.....+...+++++|.+.|+.. .+
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99998875 44 445666677777788999999999999998 67777889999999999999999999999876 33
Q ss_pred CCC---------HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 370 EPT---------ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 370 ~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
.|. +.+-..++..- -.+++..|+.+++++++.+|+ ....|..|+..-.+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333 22222233222 348999999999999999999 89999999999999999999999999764
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.1e-13 Score=120.40 Aligned_cols=327 Identities=9% Similarity=0.000 Sum_probs=245.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHH-HHHHHHHhcCC
Q 012108 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWN-TMVTGYLRSQL 184 (471)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 184 (471)
|+..+-.....+.+.|....|...|...+..-+..|.+.+....-..+.+.+..+....+..+...-. -+..++....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 54445555556677788888888888877666677777666555555555555444444333222211 23455666667
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCChHHHHHHH
Q 012108 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA--SNPHATTALIDMYAKCGSIEQSLEVF 262 (471)
Q Consensus 185 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 262 (471)
.+++..-.......|.+-+...-+....+.....++++|+.+|+++.+...- .|..+|+.++-.-....++.---...
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 8888888888888876555555555555667888999999999999987521 25667776654333322222211222
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 012108 263 YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE 342 (471)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 342 (471)
-.+.+--+.|+.++..-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++.+.+ -.+.|-.
T Consensus 323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyR 399 (559)
T KOG1155|consen 323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYR 399 (559)
T ss_pred HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHH
Confidence 22333356677888888999999999999999999863 22345677777889999999999999999998 5677899
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 012108 343 HYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420 (471)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (471)
.|-.|.++|.-.+.+.=|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|..+...+.. +...+..|+++|.+
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~ 478 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEE 478 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHH
Confidence 9999999999999999999999998 4555 7899999999999999999999999999999877 88999999999999
Q ss_pred cCCHHHHHHHHHHhhh
Q 012108 421 CGQWEEANRWRNMMND 436 (471)
Q Consensus 421 ~g~~~~A~~~~~~m~~ 436 (471)
.++.++|...|++..+
T Consensus 479 l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 9999999999988765
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=6e-15 Score=127.73 Aligned_cols=391 Identities=13% Similarity=0.107 Sum_probs=272.5
Q ss_pred chhHHHHHHHHHhccCCHhHHHHHhcccCC----CCc-ccHHHHHHHHHcCCCHHHHHHHHhcCCCC--------ChhhH
Q 012108 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPE----KDI-IAWNSMLDAFASCGQMDHAMKLIDLMPLK--------DVTSF 110 (471)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~ 110 (471)
+-.+...|...|.....+.+|+..++-+.+ |+. ..-..+.+.+.+.+++.+|+++++..... .....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 445566677788888888999999887765 332 23344667889999999999998776533 23456
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCCHHHHHHHHHhccc----------------cChHHH
Q 012108 111 NIMISGYARIGKIHSARYIFDKVPA--KDVVSWNSLILAYTNAGEMEKAGEMFKKMLV----------------KNVITW 172 (471)
Q Consensus 111 ~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~ 172 (471)
+.+...+.+.|+++.|+..|++..+ |+..+-..|+-++..-|+-++..+.|.+|+. |+....
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 6666778999999999999999854 6777777777788889999999999999821 111222
Q ss_pred H-----HHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHH-------------HHHH--------HHHHHHccCChHHHH
Q 012108 173 N-----TMVTGYLRSQL--YIEVVDLFDEMKAGNVKPDYL-------------TVTS--------VLSACANLGSLETGA 224 (471)
Q Consensus 173 ~-----~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~-------------~~~~--------l~~~~~~~~~~~~a~ 224 (471)
| -.+.-.-+.+. .++++-.--++..--+.|+-. .+.. -...+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2 22222222222 122222222222222233321 0111 122456789999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHH------------------------------------HhcCChHHHHHHHhcCCCC
Q 012108 225 RIHVYATDNGLASNPHATTALIDMY------------------------------------AKCGSIEQSLEVFYKSQVK 268 (471)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~a~~~~~~~~~~ 268 (471)
++++.+.+..-..-...-+.|...+ ...|++++|.+.|++....
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 9998887654322222222221111 1347788888888888777
Q ss_pred ChhhHHHHHH---HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 012108 269 DVFCWNAMIL---GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345 (471)
Q Consensus 269 ~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (471)
|..+-.+|.. .+-..|+.++|++.|-++... +.-+......+...|-...+..+|++++.+... -++.|+....
T Consensus 520 dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILS 596 (840)
T ss_pred chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHH
Confidence 7665555443 466789999999999887654 344667777888889999999999999998876 6777899999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHH-HHHHhcC
Q 012108 346 CMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA-NLYASCG 422 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g 422 (471)
.|.+.|-+.|+-..|++.+-+- . ++-+..+..-|..-|....-+++++..|+++.-..|. ..-|..++ .++.+.|
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~--~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN--QSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc--HHHHHHHHHHHHHhcc
Confidence 9999999999999999886554 4 3446777777888888888999999999998776665 77777655 5666789
Q ss_pred CHHHHHHHHHHhhhCCC
Q 012108 423 QWEEANRWRNMMNDTGI 439 (471)
Q Consensus 423 ~~~~A~~~~~~m~~~~~ 439 (471)
++.+|.++++...+.-+
T Consensus 675 nyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKFP 691 (840)
T ss_pred cHHHHHHHHHHHHHhCc
Confidence 99999999998876544
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1e-12 Score=119.12 Aligned_cols=399 Identities=11% Similarity=-0.016 Sum_probs=310.0
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCC-
Q 012108 27 CIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK- 105 (471)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 105 (471)
..=.+++...++. ++.++..|...+. ..+.+.|+.++.+..+--+ +-..|.-++++..-++.|.+++++.++.
T Consensus 363 ~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 363 KNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3334566666655 3456666665544 3455557777776654111 1122334556666778888888777654
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHhhcC--------CCChhhHHHHHHHHHhCCCHHHHHHHHHhccc------cCh
Q 012108 106 --DVTSFNIMISGYARIGKIHSARYIFDKVP--------AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV------KNV 169 (471)
Q Consensus 106 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~ 169 (471)
+...|.+....--.+|+.+...+++++.+ +.+...|..=...+-+.|..-.+..+...++. .-.
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 88888888888889999999988888762 23555666666677777888888777777622 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 012108 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249 (471)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (471)
.+|+.-...|.+.+.++-|..+|...++- .+-+...|......--..|..+....+++++...- +.....+......+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 67888889999999999999999988874 23345566666655566788999999999998874 56677788888888
Q ss_pred HhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 012108 250 AKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326 (471)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 326 (471)
-..|+...|..++....+ .+...|.+-+.......+++.|..+|.+.... .|+...|.--+...--.++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 999999999999887655 35678888899999999999999999998874 6787888777777777899999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
++++..+ .++.-...|..+.+.+-+.++.+.|.+.|..- ...| .+..|..|...--+.|.+-+|..++++..-.+|
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 9999998 56666888999999999999999999988765 4455 467888888888889999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
+ +...|...++.-.+.|+.+.|..++.+.++.=
T Consensus 751 k-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 751 K-NALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred C-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9 99999999999999999999999888876643
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.8e-13 Score=118.10 Aligned_cols=388 Identities=14% Similarity=0.083 Sum_probs=270.1
Q ss_pred chhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHH
Q 012108 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGY 117 (471)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 117 (471)
+...|......=..++++..|+++|++... .+...|--.+.+-.++..+..|..+++..... -...|..-+..-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 334444444444556777888899988775 46667777888888888999999988887543 223455555566
Q ss_pred HhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhCCCHHHHHHHHHhc--cccChHHHHHHHHHHHhcCCHHHHHHHHH
Q 012108 118 ARIGKIHSARYIFDKVP--AKDVVSWNSLILAYTNAGEMEKAGEMFKKM--LVKNVITWNTMVTGYLRSQLYIEVVDLFD 193 (471)
Q Consensus 118 ~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 193 (471)
-..|++..|.++|+... +|+...|.+.++.-.+-+.++.|..+|++. ..|++.+|-.....-.+.|+...|..+|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 67889999999998874 588999999999999999999999999987 67888888888888888999999999998
Q ss_pred HHHhCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCChHHHHHHH-----
Q 012108 194 EMKAGNVKPDYL----TVTSVLSACANLGSLETGARIHVYATDNGLASN--PHATTALIDMYAKCGSIEQSLEVF----- 262 (471)
Q Consensus 194 ~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~----- 262 (471)
...+. ..|.. .+.+....-.+...++.|..+|+-+++.- +.+ ...|..+...--+-|+........
T Consensus 232 rAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 232 RAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 87664 12222 23333333345667788888888887763 333 455666655555566654444332
Q ss_pred ---hcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---hccCcHHHHHH
Q 012108 263 ---YKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI-------TFIGLLSAC---SHAGLVQEGCE 326 (471)
Q Consensus 263 ---~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~ 326 (471)
++.... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 222222 5566767777777788888888888888875 555321 121111122 24677888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 327 LFSRMEKDFGVTRKLEHYGCMVDLL----GRARLLDRAIELIEAM-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
+++...+ -++....+|.-+--+| .++.++..|.+++... |..|-..+|...|..-.+.++++....++++.++
T Consensus 388 vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 388 VYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888877 4555555555544444 4667788888887765 7778888888888777788888888888888888
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 402 KSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
-+|. +..+|...+..-...|+++.|..+|+-..+..
T Consensus 466 ~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 466 FSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred cChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 8887 77778777777777777777777777665544
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.2e-13 Score=119.64 Aligned_cols=422 Identities=11% Similarity=0.006 Sum_probs=312.9
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcc--cCCCCcccHHHHHHHHHcC
Q 012108 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK--MPEKDIIAWNSMLDAFASC 89 (471)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~ 89 (471)
-+..+++-+..+.++..|.-+-++....+..|+ ----+.+++.-.|.++.|..+... +.+.|..+.......+.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 345566666667778888888888776664444 344467888888889888887775 4457888888889999999
Q ss_pred CCHHHHHHHHhcCCCC------Chhh---------------HHH-------HHHHHHhcCCHHHHHHHHhhcCCCChhhH
Q 012108 90 GQMDHAMKLIDLMPLK------DVTS---------------FNI-------MISGYARIGKIHSARYIFDKVPAKDVVSW 141 (471)
Q Consensus 90 g~~~~A~~~~~~~~~~------~~~~---------------~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 141 (471)
.+++.|+.++...... ++.+ -+. -.+.|....++++|...|.+....|+..+
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~ 175 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF 175 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH
Confidence 9999999999833100 1111 011 11235556678888888888877777666
Q ss_pred HHHHHHHHh--------------------CC-CHHHHHHHHHhc--------------------cccChHHHHHHHHHHH
Q 012108 142 NSLILAYTN--------------------AG-EMEKAGEMFKKM--------------------LVKNVITWNTMVTGYL 180 (471)
Q Consensus 142 ~~l~~~~~~--------------------~~-~~~~A~~~~~~~--------------------~~~~~~~~~~l~~~~~ 180 (471)
.++...-.. .+ +.+.-..+|+-. .+.++.....-..-+.
T Consensus 176 Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y 255 (611)
T KOG1173|consen 176 EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLY 255 (611)
T ss_pred HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHH
Confidence 554322111 00 111112222211 0113334444555677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 012108 181 RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260 (471)
Q Consensus 181 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 260 (471)
..+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+.- |..+.+|-++.-.|...|+.++|.+
T Consensus 256 ~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHH
Confidence 8899999999999988763 5566666666778889999988888888888774 7788899999999999999999999
Q ss_pred HHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 012108 261 VFYKSQVKD---VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV 337 (471)
Q Consensus 261 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (471)
.|.+...-| ...|-.+...|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|.++|.++.. -.
T Consensus 334 y~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~ 410 (611)
T KOG1173|consen 334 YFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IA 410 (611)
T ss_pred HHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cC
Confidence 998866543 468999999999999999999999887654 122222333445567889999999999999987 56
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CC-CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCc
Q 012108 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAMP--------FE-PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408 (471)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 408 (471)
|.|+...+.+.-.....+.+.+|..+|+... .. .-..+++.|..+|.+.+.+++|+..+++.+...|. +.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~ 489 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DA 489 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-ch
Confidence 6688888888888888899999999998751 11 24567899999999999999999999999999999 99
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
.++.+++-.|...|+++.|++.|.+.+...+..
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999987666543
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=3.7e-13 Score=124.08 Aligned_cols=125 Identities=7% Similarity=-0.079 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 012108 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLS 381 (471)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 381 (471)
++.....+...+...|+.++|.+++++..+ .+|++... ++.+....++.+++.+..+.. ...| |+..+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 444555555555555555555555555544 12333211 122222335555555555544 2223 3344555555
Q ss_pred HHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
.|...+++++|.+.|+++.+..|+ ...+..++.++.+.|+.++|.+++++-.
T Consensus 337 l~~~~~~~~~A~~~le~al~~~P~--~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQRPD--AYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666655543 4555556666666666666666665553
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.1e-12 Score=123.19 Aligned_cols=345 Identities=13% Similarity=0.084 Sum_probs=255.6
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccC---CCCcccHHHHHHHHHc
Q 012108 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP---EKDIIAWNSMLDAFAS 88 (471)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 88 (471)
..-...+.+...|+.+.|.+++.++++.. +.....|..|..+|-..|+.+++...+--.. ..|...|..+.....+
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 33344445556699999999999999986 4577889999999999999999988765432 3577889999999999
Q ss_pred CCCHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----hhHH----HHHHHHHhCCCHHHH
Q 012108 89 CGQMDHAMKLIDLMPLKDV---TSFNIMISGYARIGKIHSARYIFDKVPAKDV----VSWN----SLILAYTNAGEMEKA 157 (471)
Q Consensus 89 ~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~----~l~~~~~~~~~~~~A 157 (471)
.|++++|.-+|.+..+.++ ..+---+..|-+.|+...|.+-|.++...++ .-+. ..+..+...++-+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999876543 4444556788999999999999988844322 2222 334567777888999
Q ss_pred HHHHHhcccc-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----------------------HHH--
Q 012108 158 GEMFKKMLVK-----NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL----------------------TVT-- 208 (471)
Q Consensus 158 ~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------------------~~~-- 208 (471)
.+.++..+.. +...++.++..+.+..+++.+......+......+|.. .|.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 9988887542 45678899999999999999999888887622222211 111
Q ss_pred --HHHHHHHccCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHHHHHH
Q 012108 209 --SVLSACANLGSLETGARIHVYATDNGLA--SNPHATTALIDMYAKCGSIEQSLEVFYKSQV----KDVFCWNAMILGL 280 (471)
Q Consensus 209 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~ 280 (471)
-+.-++...+..+....+.....+..+. -+...|.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1222344555556666666666666633 4567888899999999999999999988776 2567899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH-------hcCCCCChhHHHHHHHHHh
Q 012108 281 ALHGYGYAALKLLGEMNDSCVKAD-DITFIGLLSACSHAGLVQEGCELFSRMEK-------DFGVTRKLEHYGCMVDLLG 352 (471)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~ 352 (471)
...|.++.|.+.|+..... .|+ ...-..|...+.+.|+.++|.+.+..+.. ..+..|+........+.+.
T Consensus 460 ~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999999999875 444 44556677788899999999999988542 1234455555555566677
Q ss_pred hcCCHHH
Q 012108 353 RARLLDR 359 (471)
Q Consensus 353 ~~g~~~~ 359 (471)
+.|+.++
T Consensus 538 ~~gk~E~ 544 (895)
T KOG2076|consen 538 QVGKREE 544 (895)
T ss_pred HhhhHHH
Confidence 7777665
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=4.5e-14 Score=131.82 Aligned_cols=425 Identities=12% Similarity=0.041 Sum_probs=268.1
Q ss_pred CcccCCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHH
Q 012108 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN 80 (471)
Q Consensus 1 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 80 (471)
|+..|+.||.+||..+|..||..|+.+.|- +|..|.-...+.+...++.++......++.+.+. +|.+.+|.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt 87 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYT 87 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHH
Confidence 467899999999999999999999999999 9999998888888999999999999889887776 78899999
Q ss_pred HHHHHHHcCCCHHH---HHHHHhcCCCC----------------------ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 012108 81 SMLDAFASCGQMDH---AMKLIDLMPLK----------------------DVTSFNIMISGYARIGKIHSARYIFDKVPA 135 (471)
Q Consensus 81 ~li~~~~~~g~~~~---A~~~~~~~~~~----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 135 (471)
.|..+|.+.|++.. +.+.++.+... ....-..++......|-++.+.+++..++.
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999998654 33322222111 111122344445556667777777766633
Q ss_pred CCh-hhHHHHHHHHHh-CCCHHHHHHHHHhccc-cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012108 136 KDV-VSWNSLILAYTN-AGEMEKAGEMFKKMLV-KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212 (471)
Q Consensus 136 ~~~-~~~~~l~~~~~~-~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 212 (471)
... ..+..+++-+.. ...+++-..+.+.... +++.+|..++.+-..+|+.+.|..++.+|.+.|.+.+.+-|..++-
T Consensus 168 sa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 168 SAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred ccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 111 011112332222 2334444444444444 7888999999999999999999999999999998888887777664
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH------------------------Hhc----
Q 012108 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV------------------------FYK---- 264 (471)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------------------~~~---- 264 (471)
+ .++...+..++.-|.+.|+.|+..|+...+-.+.++|....+.+. +++
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~ 324 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRK 324 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHH
Confidence 4 788888888899999999999988888777666554332211110 000
Q ss_pred -----CCC-------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC-HHHH---------------------
Q 012108 265 -----SQV-------KDVFCWNAMILGLALHGYGYAALKLLGEMNDSC--VKAD-DITF--------------------- 308 (471)
Q Consensus 265 -----~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~-~~~~--------------------- 308 (471)
..+ ....+|...+. ...+|+-++..++...+..-. ..++ ...|
T Consensus 325 ~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~ 403 (1088)
T KOG4318|consen 325 SVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYY 403 (1088)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 000 00111211111 111333333333333222110 0010 0111
Q ss_pred -----------------------------------------------------------HHHHHHHhccCcHHHHHHHHH
Q 012108 309 -----------------------------------------------------------IGLLSACSHAGLVQEGCELFS 329 (471)
Q Consensus 309 -----------------------------------------------------------~~l~~~~~~~~~~~~a~~~~~ 329 (471)
+.++..|+..-+..+++..-+
T Consensus 404 ~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~e 483 (1088)
T KOG4318|consen 404 AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEE 483 (1088)
T ss_pred HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222222222222222
Q ss_pred HhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP-----FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
+... . .-+..|..||+.+....+.+.|..+.++.. +..|...+..+.+.+.+.+....+..+++++.+.-.
T Consensus 484 kye~-~---lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~ 559 (1088)
T KOG4318|consen 484 KYED-L---LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE 559 (1088)
T ss_pred HHHH-H---HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence 2222 1 112567788888888888888888888873 344556677788888888999999999988877432
Q ss_pred CC--CchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 405 YL--SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 405 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
.- ...++..+.......|+.+...++.+-+...|+..
T Consensus 560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 20 23445556666777899888888888888888765
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=5.5e-13 Score=125.23 Aligned_cols=315 Identities=13% Similarity=0.063 Sum_probs=222.7
Q ss_pred HHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHhc---cccChHHHHHHHHHHHhcCCHHHHHH
Q 012108 117 YARIGKIHSARYIFDKVPAK---DVVSWNSLILAYTNAGEMEKAGEMFKKM---LVKNVITWNTMVTGYLRSQLYIEVVD 190 (471)
Q Consensus 117 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~ 190 (471)
+...|++++|.+++.++++. ....|..|..+|-..|+.+++...+-.. .+.|...|-.+.....+.|++++|.-
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33347788888877777543 4467777777888888888777766554 33466777777777777888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH----HHHHHHHHHhcCChHHHHHHHhcCC
Q 012108 191 LFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA----TTALIDMYAKCGSIEQSLEVFYKSQ 266 (471)
Q Consensus 191 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (471)
.|.+.++.. +++...+---...|-+.|+...|..-|.++.....+.+..- ....++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888777764 34444444555666777888888877777777653223222 2234455666666677777766544
Q ss_pred C-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------------------------CCCHHHHHHHHHH
Q 012108 267 V-----KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV---------------------------KADDITFIGLLSA 314 (471)
Q Consensus 267 ~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~p~~~~~~~l~~~ 314 (471)
. -+...++.++..|.+..+++.|......+..... .++... .-+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 3 1345667777777777778877777776665211 222222 122333
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C--CCHhHHHHHHHHHhhcCCc
Q 012108 315 CSHAGLVQEGCELFSRMEKDFGVTR--KLEHYGCMVDLLGRARLLDRAIELIEAMPF-E--PTESILGALLSACVIHQDL 389 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--p~~~~~~~l~~~~~~~g~~ 389 (471)
+.+....+....+.....+ ..+.| +...|.-+.++|...|++.+|+.+|..+.. + .+...|..+..+|...|.+
T Consensus 387 L~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4445555555555555555 35333 578899999999999999999999999832 2 2466899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
++|.+.+++++...|. +...-.+|...+.+.|+.++|.+.++.+.
T Consensus 466 e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999 99999999999999999999999999986
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=2.2e-13 Score=125.55 Aligned_cols=278 Identities=13% Similarity=-0.024 Sum_probs=219.5
Q ss_pred hcCCHHHHHHHHhhcCCC--Chhh-HHHHHHHHHhCCCHHHHHHHHHhccc--cChHHHH--HHHHHHHhcCCHHHHHHH
Q 012108 119 RIGKIHSARYIFDKVPAK--DVVS-WNSLILAYTNAGEMEKAGEMFKKMLV--KNVITWN--TMVTGYLRSQLYIEVVDL 191 (471)
Q Consensus 119 ~~g~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~ 191 (471)
..|+++.|++.+....+. .+.. |........+.|+++.|.+.+.++.+ |+..... .....+...|++++|.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 369999999999887553 2333 33345556899999999999999844 3433222 336788999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh-------HHHHHHHHHHhcCChHHHHHHHhc
Q 012108 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH-------ATTALIDMYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 192 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 264 (471)
++++.+.. +-+......+...+.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99998875 3356677788899999999999999999999987543321 333344444455566777788877
Q ss_pred CCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 012108 265 SQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341 (471)
Q Consensus 265 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 341 (471)
+.. .++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+ ..+.|+
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 765 47788899999999999999999999999874 5555322 23344456999999999999998 566678
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 342 EHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
..+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|..++++....-
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88899999999999999999999998 678999999999999999999999999999887653
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1e-11 Score=108.53 Aligned_cols=409 Identities=12% Similarity=0.074 Sum_probs=222.3
Q ss_pred HHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CCc-ccHHHHHHHHHcCCCHHH
Q 012108 18 KAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDI-IAWNSMLDAFASCGQMDH 94 (471)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~ 94 (471)
+.-..++++..|..+|++.+... ..+...|-..+.+=.+...+..|+.++++... |-+ ..|--.+..--..|++..
T Consensus 81 qwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHH
Confidence 33334555566666666665543 23444555555555555555555555555432 211 112222222223444555
Q ss_pred HHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhhHHHHHHHHHhCCCHHHHHHHHHhcccc---
Q 012108 95 AMKLIDLMP--LKDVTSFNIMISGYARIGKIHSARYIFDKV--PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK--- 167 (471)
Q Consensus 95 A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 167 (471)
|..+|+... .|+...|.+.++.-.+.+.++.|..+++.. ..|++..|......-.+.|+...|..+|+..+..
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 555554432 234444555555555555555555555444 2244444444444444444444444444443211
Q ss_pred ---C------------------------------------hHHHHHHHHHHHhcCCHHHHHHH--------HHHHHhCCC
Q 012108 168 ---N------------------------------------VITWNTMVTGYLRSQLYIEVVDL--------FDEMKAGNV 200 (471)
Q Consensus 168 ---~------------------------------------~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~g~ 200 (471)
+ ...|......--+-|+....... |+.+++.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 1 22233333322333333322221 22223222
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch--hHHHHHHHH--------HHhcCChHHHHHHHhcCCC---
Q 012108 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP--HATTALIDM--------YAKCGSIEQSLEVFYKSQV--- 267 (471)
Q Consensus 201 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~--- 267 (471)
+-|-.+|--.++.-...|+.+...++|+.++..- +|-. ..+...+-. -....+.+.+.++|+....
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 3445556556666666677777777777776552 4421 112222211 1234566666666655333
Q ss_pred CChhhHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 012108 268 KDVFCWNA----MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343 (471)
Q Consensus 268 ~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 343 (471)
+...+|.. ......++.+...|.+++...+ |.-|...+|...|..-.+.++++.+..++++..+ -.|-+..+
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~ 473 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYA 473 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHH
Confidence 33333333 3334446677778887777655 4577777888888877788888888888888877 33446777
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAMPFEPT----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (471)
|......=...|+.+.|..+|.-.-.+|. ...|.+.|.--...|.++.|..+++++++..+. ..+|.+++..-.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kvWisFA~fe~ 551 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKVWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chHHHhHHHHhc
Confidence 77777777778888888888877744553 335556666666778888888888888877766 447776666444
Q ss_pred -----hcC-----------CHHHHHHHHHHhh
Q 012108 420 -----SCG-----------QWEEANRWRNMMN 435 (471)
Q Consensus 420 -----~~g-----------~~~~A~~~~~~m~ 435 (471)
+.| ....|..+|++..
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 334 4556777777653
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=1e-12 Score=121.87 Aligned_cols=115 Identities=11% Similarity=0.014 Sum_probs=61.1
Q ss_pred hcCCHHHHHHHHhhcCC--CCh-hhHHHHHHHHHhCCCHHHHHHHHHhcc--ccCh--HHHHHHHHHHHhcCCHHHHHHH
Q 012108 119 RIGKIHSARYIFDKVPA--KDV-VSWNSLILAYTNAGEMEKAGEMFKKML--VKNV--ITWNTMVTGYLRSQLYIEVVDL 191 (471)
Q Consensus 119 ~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~l~~~~~~~~~~~~a~~~ 191 (471)
..|+++.|.+.+.+..+ |++ ..+.....++.+.|+.+.|.+.+.+.. .|+. ..--.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34556666555555532 221 222333455556666666666666652 1222 1222235555666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 012108 192 FDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234 (471)
Q Consensus 192 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (471)
++.+.+.. +-+......+...+...|+++.|.+.+..+.+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66666553 2233445555566666666666666666666665
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=9e-13 Score=122.26 Aligned_cols=284 Identities=12% Similarity=-0.015 Sum_probs=206.4
Q ss_pred HHhCCCHHHHHHHHHhccc--cCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChHH
Q 012108 148 YTNAGEMEKAGEMFKKMLV--KNV-ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL--TVTSVLSACANLGSLET 222 (471)
Q Consensus 148 ~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~ 222 (471)
....|+++.|.+.+.+..+ |++ ..+-....+....|+++.|.+.+.+..+. .|+.. .-......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 4578999999999988843 333 33444567788899999999999998765 34443 33335777888999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHH----HHHHHHHhcCChHHHHHHHHH
Q 012108 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK---DVFCWN----AMILGLALHGYGYAALKLLGE 295 (471)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~ 295 (471)
|...++.+.+.. |.++.+...+...+...|++++|.+.+....+. +...+. .........+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999986 667889999999999999999999999887643 333232 111222333333444445555
Q ss_pred HHhCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH--HHhhcCCHHHHHHHHHhC-CC
Q 012108 296 MNDSCV---KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD--LLGRARLLDRAIELIEAM-PF 369 (471)
Q Consensus 296 ~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~-~~ 369 (471)
+..... +.+...+..+...+...|+.++|.+++++..+. .+++......++. .....++.+.+.+.+++. ..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 554311 237788888999999999999999999999983 3333321101222 223457888888888776 33
Q ss_pred CCC-H--hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 370 EPT-E--SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 370 ~p~-~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
.|+ + ....++...+.+.|++++|.+.|+........|++..+..++..+.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 4 566788999999999999999999644444445677788999999999999999999998754
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1e-15 Score=134.95 Aligned_cols=247 Identities=17% Similarity=0.145 Sum_probs=75.3
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHhc-cCCchhHHHHHHHHHhccCCHhHHHHHhcccCCC---CcccHHHHHHHHHcCC
Q 012108 15 LLLKAAGILSSSCIGLMLHGQTIKTG-FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK---DIIAWNSMLDAFASCG 90 (471)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 90 (471)
.+...+...|++++|.++++...... .+.+...|..+.......++++.|+..++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44555666777777777775544333 2334445555555555667777777777776642 33345555555 5667
Q ss_pred CHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhCCCHHHHHHHHHh
Q 012108 91 QMDHAMKLIDLMPLK--DVTSFNIMISGYARIGKIHSARYIFDKVP-----AKDVVSWNSLILAYTNAGEMEKAGEMFKK 163 (471)
Q Consensus 91 ~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 163 (471)
++++|.++++..-+. ++..+...+..+...++++++.++++.+. +.+...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766655322 45555566666666666666666666641 23455566666666666666666666666
Q ss_pred cc--cc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh
Q 012108 164 ML--VK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240 (471)
Q Consensus 164 ~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (471)
.. .| |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..+++...+.. +.|+.
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 62 23 34556666666666666666666665555432 2333444555666666666666666666666554 45566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc
Q 012108 241 ATTALIDMYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~ 264 (471)
+...+..++...|+.++|.++.++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccc
Confidence 666666666666666666665544
No 46
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.1e-11 Score=107.00 Aligned_cols=344 Identities=12% Similarity=0.079 Sum_probs=225.4
Q ss_pred CCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccC----CCCcccHHH
Q 012108 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP----EKDIIAWNS 81 (471)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 81 (471)
.+-+..+|..+|.++|+-...+.|.+++.+..+...+.+..++|.+|.+-.-..+ .+++.+|. .||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 3556789999999999999999999999999888888999999999886554333 55666665 499999999
Q ss_pred HHHHHHcCCCHHHHHH----HHhcCC----CCChhhHHHHHHHHHhcCCHHH-HHHHHhhc------------CCCChhh
Q 012108 82 MLDAFASCGQMDHAMK----LIDLMP----LKDVTSFNIMISGYARIGKIHS-ARYIFDKV------------PAKDVVS 140 (471)
Q Consensus 82 li~~~~~~g~~~~A~~----~~~~~~----~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~------------~~~~~~~ 140 (471)
++.+..+.|+++.|.+ ++.+|+ .|...+|..++..+.+.++..+ +..++..+ .+.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998876654 445554 4467799999999999888754 44444443 1235567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcc--------ccC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012108 141 WNSLILAYTNAGEMEKAGEMFKKML--------VKN---VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209 (471)
Q Consensus 141 ~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 209 (471)
|...++.|.+..+.+.|.++..-.. .++ ..-|..+....++....+.....|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7888888889999999988776652 122 23456677788888889999999999987777788889999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-ChH-HHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 012108 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG-SIE-QSLEVFYKSQVKDVFCWNAMILGLALHGYGY 287 (471)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 287 (471)
++++..-.|.++-.-++|.+++..|...+.....-++..+++.. +.. -+.+ -+.....-++ ..-.+
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~-----------Ql~~~~ak~a-ad~~e 506 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE-----------QLQVAFAKCA-ADIKE 506 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH-----------HHHHHHHHHH-HHHHH
Confidence 99999999999999999999998885555544444444444433 110 0000 0111111000 00011
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH---HHHHHHhhcCCHHHHHHHH
Q 012108 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG---CMVDLLGRARLLDRAIELI 364 (471)
Q Consensus 288 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~ 364 (471)
.....-.+|.+.. .+....+.++-.+.+.|..++|.+++..+.+...--|-....+ .+++.-.+.+++..|...+
T Consensus 507 ~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 1112222333332 2333444455555666666666666666644222223333333 3344445556666666666
Q ss_pred HhC
Q 012108 365 EAM 367 (471)
Q Consensus 365 ~~~ 367 (471)
+-+
T Consensus 585 Q~a 587 (625)
T KOG4422|consen 585 QLA 587 (625)
T ss_pred HHH
Confidence 555
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.8e-13 Score=124.48 Aligned_cols=267 Identities=15% Similarity=0.086 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC------CCcccHHHHHHHHHcCCCHH-HHHHHH
Q 012108 27 CIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE------KDIIAWNSMLDAFASCGQMD-HAMKLI 99 (471)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~-~A~~~~ 99 (471)
++|..+|+.+.+. ...+..+...+...|...+++++|+++|+.+.+ .+.+.|++.+.-+-+.=.+. -|..+.
T Consensus 336 ~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 336 REALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555553322 233334555555555555555555555555443 23444544443332111110 111111
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHH--
Q 012108 100 DLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKD---VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNT-- 174 (471)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 174 (471)
+. -+..+.+|.++..+|.-.++.+.|++.|++.+..| ..+|+.+..-+....++|.|...|+..+..|+..||+
T Consensus 415 ~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 415 DT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred hh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence 11 11244555555555555555555555555553322 2344444444444555555555555554444443332
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 012108 175 -MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253 (471)
Q Consensus 175 -l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (471)
+...|.++++++.|+-.|++..+-+ +-+.+....+...+.+.|+.++|+++++++.... +.|+..-...+..+...+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLG 571 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhc
Confidence 3334555555555555555544432 1122333333444444455555555555544443 223322222333344444
Q ss_pred ChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 012108 254 SIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMN 297 (471)
Q Consensus 254 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (471)
++++|+..++++.. .+...+..+...|.+.|+.+.|+.-|.-+.
T Consensus 572 ~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 44444444443322 123333444444444444444444444333
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.1e-13 Score=122.99 Aligned_cols=281 Identities=10% Similarity=0.021 Sum_probs=201.2
Q ss_pred CHHHHHHHHHhcccc---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHH-H
Q 012108 153 EMEKAGEMFKKMLVK---NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV--KPDYLTVTSVLSACANLGSLETGAR-I 226 (471)
Q Consensus 153 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~-~ 226 (471)
+..+|...|.+.+.. .......+..+|...+++++|.++|+...+... .-+...|.+.+.-+- + +-+.. +
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHHH
Confidence 456777777775322 334455677788888888888888888766421 123445665554321 1 11222 2
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 012108 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303 (471)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 303 (471)
-+.+.+.. +..+.+|.++...|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 23344443 667888888888888888888888888887663 3467777777778888888888888887753 23
Q ss_pred -CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHH
Q 012108 304 -DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALL 380 (471)
Q Consensus 304 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 380 (471)
+-..|..+...|.++++++.|+-.|+++.+ --+.+......+...+.+.|+.++|+.+++++ ...| |+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 233555677788888999999888888886 34446677777778888889999999999887 3333 444444556
Q ss_pred HHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccC
Q 012108 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443 (471)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 443 (471)
..+...+++++|+..++++.+.-|+ +..++..+++.|.+.|+.+.|..-|.-+.+.++....
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6677888999999999999999998 8889999999999999999998888888777766544
No 49
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.7e-10 Score=103.91 Aligned_cols=413 Identities=10% Similarity=0.036 Sum_probs=244.9
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcc-cH-HHHHHHHHcCCC
Q 012108 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDII-AW-NSMLDAFASCGQ 91 (471)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~li~~~~~~g~ 91 (471)
-+=++.+...|++++|.+...+++..+ +.+..++.+-+-++.+.+++++|.++.+.-...... .+ -.-.-++.+.+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 344566778899999999999999887 557778888888999999999999877664421111 11 112334457899
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh-CCCHHHHHHHHHhccccChH
Q 012108 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN-AGEMEKAGEMFKKMLVKNVI 170 (471)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~ 170 (471)
.++|+..++-..+.+..+...-...|.+.|++++|..+|+.+.+.+...+...+.+-+- .+-.-.+. +.+..+.....
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~ 173 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPED 173 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcc
Confidence 99999999966666777888888999999999999999999955443333322221110 01001111 22222111111
Q ss_pred HHH---HHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCH------H-HHHHHHHHHHccCChHHHHHHHHHHHHc
Q 012108 171 TWN---TMVTGYLRSQLYIEVVDLFDEMKAGN-------VKPDY------L-TVTSVLSACANLGSLETGARIHVYATDN 233 (471)
Q Consensus 171 ~~~---~l~~~~~~~~~~~~a~~~~~~m~~~g-------~~p~~------~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (471)
+|. .....+...|++.+|+++++...+.+ -.-+. . .-..+...+-..|+-++|..++...++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 221 22334445566666666665552110 00000 0 1112223334456666666666665555
Q ss_pred CCCCchhH----HHHHHH---------------------------------------------HHHhcCChHHHHHHHhc
Q 012108 234 GLASNPHA----TTALID---------------------------------------------MYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 234 ~~~~~~~~----~~~l~~---------------------------------------------~~~~~~~~~~a~~~~~~ 264 (471)
. ++|... .|.|+. ...-.+..+.+.++...
T Consensus 254 ~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 254 N-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred c-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 4 222211 111111 11111222333333333
Q ss_pred CCCCC-hhhHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH--------HhHH
Q 012108 265 SQVKD-VFCWNAMILGLAL--HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS--------RMEK 333 (471)
Q Consensus 265 ~~~~~-~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~ 333 (471)
..... ...+.+++....+ ...+..+.+++...-+....-........+......|+++.|.+++. .+.+
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 33222 3344555544332 33567777777777665222223455556677788999999999999 4443
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHhH----HHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-----PFEPTESI----LGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 334 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
.+ ..+.+..+++..+.+.++.+.|..++.+. ...+.... +.-+...-.+.|+-++|..+++++.+.+|
T Consensus 413 -~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 413 -AK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred -hc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 23 34556667888888888877777776655 11222233 33333344577999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 405 YLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
. |..+...++.+|++. +.+.|..+-..+
T Consensus 490 ~-d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 490 N-DTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred c-hHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9 999999999999887 678887776655
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=4.6e-12 Score=105.39 Aligned_cols=285 Identities=13% Similarity=0.103 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhcc
Q 012108 89 CGQMDHAMKLIDLMPLKDVTSF---NIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML 165 (471)
Q Consensus 89 ~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 165 (471)
+++.++|.++|-+|.+.|+.|+ .++.+.|.+.|..+.|+.+...+......|+..
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q---------------------- 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ---------------------- 105 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH----------------------
Confidence 4456666666666655544333 234445555555555555555553321111110
Q ss_pred ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhH
Q 012108 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN----PHA 241 (471)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 241 (471)
-..+.-.|..-|...|-+|.|..+|..+.+.| ..-......|+..|-...+|++|..+-+++.+.+-.+. ...
T Consensus 106 --r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf 182 (389)
T COG2956 106 --RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF 182 (389)
T ss_pred --HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 00112223333444444444444444444322 11222333444444444444444444444444332221 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 012108 242 TTALIDMYAKCGSIEQSLEVFYKSQVKD---VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318 (471)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 318 (471)
|..|...+....+.+.|..++.+..+.| +.+--.+.......|+++.|.+.++...+++..--+.+...|..+|.+.
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 3333333333444444444444433321 2222333444555555556666665555553333334455555666666
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHH-HHHhCCCCCCHhHHHHHHHHHhh---cCCchHHHH
Q 012108 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIE-LIEAMPFEPTESILGALLSACVI---HQDLEIGDR 394 (471)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~ 394 (471)
|+.++....+..+.+. .+.+..-..+.+.-....-.+.|.. +.+.+.-+|+...+..++..... .|..++...
T Consensus 263 g~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~ 339 (389)
T COG2956 263 GKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLD 339 (389)
T ss_pred CCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHH
Confidence 6666666666655551 2222223333333322222333332 33344455666666666655332 223444444
Q ss_pred HHHHHHH
Q 012108 395 VAKMVCA 401 (471)
Q Consensus 395 ~~~~~~~ 401 (471)
.++.|..
T Consensus 340 ~lr~mvg 346 (389)
T COG2956 340 LLRDMVG 346 (389)
T ss_pred HHHHHHH
Confidence 4454443
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=3.2e-11 Score=103.57 Aligned_cols=127 Identities=16% Similarity=0.031 Sum_probs=68.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012108 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 348 (471)
++..-.+++.-+.+.|+.++|.++..+..+++..|+ ....-.+.+.++...-++..++..+. .+.++..+..|.
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG 335 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLG 335 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHH
Confidence 444555555555566666666666666555544443 11122234455555555555555542 223334555566
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 349 DLLGRARLLDRAIELIEAM-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
..|.+.+.+.+|.+.|+.. ...|+..+|+-+..++.+.|+..+|..+.++.+.
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6666666666666666544 4555666666666666666666666665555543
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.5e-10 Score=101.16 Aligned_cols=354 Identities=12% Similarity=0.065 Sum_probs=245.2
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhH-HHHHHHHHhCCC
Q 012108 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSW-NSLILAYTNAGE 153 (471)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 153 (471)
|+..+-.....+-+.|....|.+.|......-+..|.+.+....-..+.+.+..+...+...+...- --+..++....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 3333333444566778888999988887765455555555544444444444443333322211111 123345556666
Q ss_pred HHHHHHHHHhccc----cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHH
Q 012108 154 MEKAGEMFKKMLV----KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV--KPDYLTVTSVLSACANLGSLETGARIH 227 (471)
Q Consensus 154 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (471)
.+++..-...... .+...-+....+.....++++|+.+|+++.+... --|..+|+.++..-..... ..++
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls~L 318 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LSYL 318 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HHHH
Confidence 6776665555522 2444445555667778899999999999988732 1255677776644322111 1222
Q ss_pred HH-HHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 012108 228 VY-ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303 (471)
Q Consensus 228 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 303 (471)
.+ ..+.+ +--+.|...+.+.|+-.++.++|...|++..+- ...+|+.+..-|...++...|++.++..++-+ +-
T Consensus 319 A~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~ 396 (559)
T KOG1155|consen 319 AQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR 396 (559)
T ss_pred HHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch
Confidence 22 11111 445667888889999999999999999987663 45789999999999999999999999999863 45
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhHHHHHHH
Q 012108 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP--FEPTESILGALLS 381 (471)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 381 (471)
|-..|..|.++|.-.+...=|+-+|+++.+ -.+.|...|.+|.++|.+.++.++|++.|.+.- ...+...+..|..
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 778999999999999999999999999987 345579999999999999999999999999882 2334578889999
Q ss_pred HHhhcCCchHHHHHHHHHHHcC----CCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 382 ACVIHQDLEIGDRVAKMVCAKS----NYLSD---GELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
.|-+.++.++|...+++.++.. .. ++ ....-|+.-+.+.+++++|..+-......
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999998887632 22 23 23334667788889999988766655443
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=3e-11 Score=103.73 Aligned_cols=282 Identities=10% Similarity=0.014 Sum_probs=198.6
Q ss_pred hCCCHHHHHHHHHhcccc---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 012108 150 NAGEMEKAGEMFKKMLVK---NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226 (471)
Q Consensus 150 ~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 226 (471)
..|++.+|++...+-.+. ....|..-+.+--..|+.+.+-.++.+.-+.--.++...+-+..+.....|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 357777777777665222 23334444556666777777777777776642234444555556666777777777777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHH
Q 012108 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD-----------VFCWNAMILGLALHGYGYAALKLLGE 295 (471)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (471)
..++.+.+ +.++.+.....++|.+.|++.....++.++.+.. ..+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777765 5566777777777777777777777777666531 24677777766666666666667776
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCH
Q 012108 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTE 373 (471)
Q Consensus 296 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~ 373 (471)
...+ .+-++..-..++.-+.+.|+.++|.++..+..+ .+..|+ ...++ .+.+-++.+.-.+..++- ..+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6544 455677778888889999999999999999988 466666 22222 344556666555554443 222345
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
..+.+|...|.+.+.+.+|...|+.+++..|. ..+|..++.++.+.|+..+|.+..++....-..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s--~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS--ASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 78888999999999999999999988887765 999999999999999999999999888644333
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.7e-11 Score=102.13 Aligned_cols=264 Identities=11% Similarity=0.127 Sum_probs=143.6
Q ss_pred cCCHhHHHHHhcccCCCCcccH---HHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 012108 58 LRCIDDAFKVFEKMPEKDIIAW---NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP 134 (471)
Q Consensus 58 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 134 (471)
+.+.++|..+|-+|.+-|+.++ -+|.+.|-+.|..++|+++-..+......|++.-..+.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl----------------- 110 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLAL----------------- 110 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHH-----------------
Confidence 4789999999999988665554 56889999999999999999988766333433322221
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHhcccc---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHH
Q 012108 135 AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK---NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY----LTV 207 (471)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~ 207 (471)
..|..-|...|-+|.|+++|..+... -..+...|+..|-...+|++|++.-+++.+.+-.+.. ..|
T Consensus 111 -------~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 111 -------QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred -------HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 12333344444444444444444331 1223344455555555555555555555444322221 123
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----hhHHHHHHHHHhc
Q 012108 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV----FCWNAMILGLALH 283 (471)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~ 283 (471)
..+...+....+.+.|..++++..+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|.+.
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 334444444555666666666655554 33444444555666666666666666666555443 2445555666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH-HhHHhcCCCCChhHHHHHHHHHh
Q 012108 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS-RMEKDFGVTRKLEHYGCMVDLLG 352 (471)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 352 (471)
|+.++....+.++.+.. +....-..+........-.+.|..++. .+.+ .|+...+..+++.-.
T Consensus 263 g~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r----~Pt~~gf~rl~~~~l 326 (389)
T COG2956 263 GKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR----KPTMRGFHRLMDYHL 326 (389)
T ss_pred CCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh----CCcHHHHHHHHHhhh
Confidence 66666666666665542 222222333333223333344443333 3333 466666666666543
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=5.3e-09 Score=95.40 Aligned_cols=411 Identities=14% Similarity=0.170 Sum_probs=260.3
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC-----------------
Q 012108 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE----------------- 73 (471)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------- 73 (471)
..|...+......|-++.+..++++.++.. +..-.-.+..++..+++++|.+.+.....
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 456667777777777888888888887653 22356677888889999999998887642
Q ss_pred ---------CCc----------------------ccHHHHHHHHHcCCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHhc
Q 012108 74 ---------KDI----------------------IAWNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNIMISGYARI 120 (471)
Q Consensus 74 ---------~~~----------------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~ 120 (471)
|+. ..|+.|.+-|++.|.+++|..+|++.... ....|..+.++|+.-
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence 110 25888889999999999999998876544 333344444433321
Q ss_pred C----------------------CHHHHHHHHhhc---------------------------------------------
Q 012108 121 G----------------------KIHSARYIFDKV--------------------------------------------- 133 (471)
Q Consensus 121 g----------------------~~~~a~~~~~~~--------------------------------------------- 133 (471)
. +++-...-|+.+
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHH
Confidence 1 011111122222
Q ss_pred --CCC------ChhhHHHHHHHHHhCCCHHHHHHHHHhccccC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012108 134 --PAK------DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN-------VITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198 (471)
Q Consensus 134 --~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 198 (471)
..| -...|..+.+.|-..|+++.|..+|++..+-+ ..+|..-...-.+..+++.|+++++.....
T Consensus 375 ~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 375 KTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 001 11245667778888889999999998874321 234555556666777888888888776542
Q ss_pred CCCC-----------------CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012108 199 NVKP-----------------DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261 (471)
Q Consensus 199 g~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 261 (471)
.-.| +...|...++.--..|-++....+|+.+.+..+ .++.+.......+-...-++++.++
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1111 112344444444556788888888888888763 3445555556666667778899999
Q ss_pred HhcCCC----CCh-hhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHh
Q 012108 262 FYKSQV----KDV-FCWNAMILGLAL---HGYGYAALKLLGEMNDSCVKADDITFIGLLSA--CSHAGLVQEGCELFSRM 331 (471)
Q Consensus 262 ~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~ 331 (471)
|++... |+. ..|+..+.-+.+ ...++.|..+|++..+ |++|...-+.-|+-+ =-+.|-...|..+++++
T Consensus 534 YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 988765 333 466666655544 3468999999999998 677654333223322 23468888999999998
Q ss_pred HHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHH---HHHHHHHhhcCCchHHHHHHHHHHHc-CC
Q 012108 332 EKDFGVTRK--LEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESIL---GALLSACVIHQDLEIGDRVAKMVCAK-SN 404 (471)
Q Consensus 332 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~-~~ 404 (471)
.. ++++. ...|+..|.-....--+....++|++. ..-|+...- .-....-.+.|..++|..++....+. +|
T Consensus 613 t~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 613 TS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred Hh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 76 56553 556777776444332233334444444 223444332 22334456789999999998877654 57
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHH
Q 012108 405 YLSDGELMMFANLYASCGQWEEANR 429 (471)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~ 429 (471)
..+...|.+.=..-.+.|+-+...+
T Consensus 691 r~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHH
Confidence 6677788888777888888444433
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.9e-09 Score=91.21 Aligned_cols=426 Identities=12% Similarity=0.034 Sum_probs=260.9
Q ss_pred HHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCCCHH
Q 012108 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCGQMD 93 (471)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 93 (471)
+.-+....++..|..+++.-...+-+....+-.-+..++.+.|++++|...+..+.+ ++...+..|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 445556778899999888776554332223444456677789999999999887653 56667777777777788999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccCh--HH
Q 012108 94 HAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNV--IT 171 (471)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~ 171 (471)
+|..+-.+..+ ++-.-..+....-+.++-++-....+.+... ...-.+|.......-.+.+|+++++++...+. ..
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 99988877653 3444445555666677766666665555332 24445566666666789999999999965443 33
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcc--CChHHH------------HHHHHHHHHcCC
Q 012108 172 WNT-MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL-TVTSVLSACANL--GSLETG------------ARIHVYATDNGL 235 (471)
Q Consensus 172 ~~~-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~--~~~~~a------------~~~~~~~~~~~~ 235 (471)
.|. +.-+|.+..-++-+.+++.-.++. .||+. ..+.......+. |+..+. ....+.+.++++
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 443 455778888888888888877764 35443 233222222221 111111 111222222211
Q ss_pred ------------CC-----chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcC-------ChHHHHH
Q 012108 236 ------------AS-----NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHG-------YGYAALK 291 (471)
Q Consensus 236 ------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~ 291 (471)
-| -+..-..|+-.|.+.+++++|..+.+...+..+.-|-.-.-.++..| ...-|.+
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 01 12233446667889999999999999888765544433333333333 2444555
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 012108 292 LLGEMNDSCVKADDI-TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370 (471)
Q Consensus 292 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 370 (471)
.|+-.-..+..-|.. .-.++...+.-..++++.+-+++.+.. +-...|...+ .+.++++..|++.+|+++|-.+..+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 555444444333322 223344445556678888888888887 4444444444 4778888999999999999887311
Q ss_pred --CCHhHHH-HHHHHHhhcCCchHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCcce
Q 012108 371 --PTESILG-ALLSACVIHQDLEIGDRVAKMVCAKSNYLSD-GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446 (471)
Q Consensus 371 --p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 446 (471)
.+..+|. .|.++|.+.+.++.|..++- +.+...+. .....++.-|.+.+.+=-|-+.|+.+...+|.|. .
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE---n 496 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE---N 496 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc---c
Confidence 3455664 45567788889888866543 33322122 2333456678888888888888888877777655 4
Q ss_pred EEEEcCeE
Q 012108 447 VIEVNGSY 454 (471)
Q Consensus 447 ~~~~~~~~ 454 (471)
|-.=+++|
T Consensus 497 WeGKRGAC 504 (557)
T KOG3785|consen 497 WEGKRGAC 504 (557)
T ss_pred cCCccchH
Confidence 44444444
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=1.7e-11 Score=105.45 Aligned_cols=197 Identities=13% Similarity=0.043 Sum_probs=143.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 315 (471)
...+..+...+...|++++|.+.+++... .+...+..+...+...|++++|.+.+++..... +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 44555566666666666666666665432 234566666777777778888888887777653 33455667777778
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHH
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 393 (471)
...|++++|.+.++++......+.....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888763222334556677778888888888888888877 3333 4567778888888999999999
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
..++++.+..+. ++..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQ-TAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999888665 7788888889999999999999988877543
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.6e-09 Score=95.60 Aligned_cols=382 Identities=12% Similarity=-0.011 Sum_probs=258.7
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhccCCc-hhHHHHHHHHHhccCCHhHHHHHhcccCCCCc---ccHHHHHHHHHc
Q 012108 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI---IAWNSMLDAFAS 88 (471)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~ 88 (471)
+...-+-|.++|.+++|.+.+.+.++. .|| +..|.....+|...|+|+++.+---...+-++ ..+..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 344556788999999999999999987 467 78899999999999999999887766665333 345555667777
Q ss_pred CCCHHHHHHH------HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChh--------------------
Q 012108 89 CGQMDHAMKL------IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA---KDVV-------------------- 139 (471)
Q Consensus 89 ~g~~~~A~~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-------------------- 139 (471)
.|++++|+.= ++..... .+ ..++.-..+.--..++.+-+..-.+ |+..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~--s~-~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNA--SI-EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccc--hh-HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 8888887642 2221111 11 1111111111111222223321100 1111
Q ss_pred ---hHHHHHHHH----Hh-CCCHHHHHHHHHhc-------cccC---------hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012108 140 ---SWNSLILAY----TN-AGEMEKAGEMFKKM-------LVKN---------VITWNTMVTGYLRSQLYIEVVDLFDEM 195 (471)
Q Consensus 140 ---~~~~l~~~~----~~-~~~~~~A~~~~~~~-------~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m 195 (471)
....+...+ .. ...+.+|.+.+.+- ...+ ..+...-...+.-.|+...|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 111122111 11 11344444444332 1111 122222223345578899999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---Chhh
Q 012108 196 KAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK---DVFC 272 (471)
Q Consensus 196 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 272 (471)
++....++. .|--+...|....+.++..+.|..+.+.+ +.++.+|..-.+.+.-.+++++|..-|++...- +...
T Consensus 353 I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 353 IKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred HhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 886533333 27677778899999999999999999987 778888888889999999999999999987763 5566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC------CCChhHHHH
Q 012108 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV------TRKLEHYGC 346 (471)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~ 346 (471)
|-.+..+..+.+++++++..|++.+.+ ++-.+..|+.....+..+++++.|.+.|+...+--.. .+.+...-+
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 777777777899999999999999987 5556788999999999999999999999999871111 122223333
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 347 MVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
++..-. .+++..|.+++++. .+.| ....|..|...-.+.|+.++|+++|++.....
T Consensus 510 ~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 510 LLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred Hhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333 38999999999988 5555 45789999999999999999999999987654
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.8e-09 Score=97.05 Aligned_cols=407 Identities=10% Similarity=-0.035 Sum_probs=284.0
Q ss_pred CCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---------CC-
Q 012108 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---------KD- 75 (471)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~- 75 (471)
+.-|+.-.--+.+.+.-.|+++.|..+...-.- .+.|..+......++.+..+++.|..++..... .+
T Consensus 45 l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 45 LTNDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 333444444566777777888888776655422 134777777778888889999999999983320 11
Q ss_pred -------ccc----HHHH-------HHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHh------------------
Q 012108 76 -------IIA----WNSM-------LDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR------------------ 119 (471)
Q Consensus 76 -------~~~----~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~------------------ 119 (471)
..- -+.- ...|....+.++|...+.+....|+..|..+...-..
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a 202 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLA 202 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHH
Confidence 100 0111 1234445567777777777665555544433222110
Q ss_pred ---cCCHHHHHHHHhhc--------------------CCCChhhHHHHHHHHHhCCCHHHHHHHHHhcccc---ChHHHH
Q 012108 120 ---IGKIHSARYIFDKV--------------------PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK---NVITWN 173 (471)
Q Consensus 120 ---~g~~~~a~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 173 (471)
..+.+.-+.+|+-. ...+........+-+...+++.+..++++.+.+. +...+-
T Consensus 203 ~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~ 282 (611)
T KOG1173|consen 203 MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP 282 (611)
T ss_pred hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH
Confidence 01111222222211 1123344455566778889999999999998443 445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 012108 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253 (471)
Q Consensus 174 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (471)
.-|.++...|+..+-..+=.++.+. .+-...+|-.+.--|.-.|+..+|.++|.+....+ +.-...|-.+...|.-.|
T Consensus 283 ~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 283 LHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcc
Confidence 6677899999988888888888775 24456788888888888899999999999987765 444668889999999999
Q ss_pred ChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 012108 254 SIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSR 330 (471)
Q Consensus 254 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (471)
.-++|+..+....+ .....+--+.--|.+.+..+-|.+.|.+.... .+-|+...+-+.-.....+.+.+|..+|+.
T Consensus 361 EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 99999998876544 22233344555688899999999999998875 345677778787777788999999999998
Q ss_pred hHHhc-CCC----CChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 331 MEKDF-GVT----RKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 331 ~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
..... .+. ....+++.|..+|.+.+.+++|+..+++. ..+.+..++.++.-.|...|+++.|...|.+.+...
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 87411 011 13556889999999999999999999987 345588899999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHH
Q 012108 404 NYLSDGELMMFANLY 418 (471)
Q Consensus 404 ~~~~~~~~~~l~~~~ 418 (471)
|. +..+-..|..+.
T Consensus 520 p~-n~~~~~lL~~ai 533 (611)
T KOG1173|consen 520 PD-NIFISELLKLAI 533 (611)
T ss_pred Cc-cHHHHHHHHHHH
Confidence 88 655555554443
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=8.1e-11 Score=113.52 Aligned_cols=260 Identities=12% Similarity=0.031 Sum_probs=187.8
Q ss_pred ChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH---------ccCChHHHHHHHHHHHH
Q 012108 168 NVITWNTMVTGYLR-----SQLYIEVVDLFDEMKAGNVKPDY-LTVTSVLSACA---------NLGSLETGARIHVYATD 232 (471)
Q Consensus 168 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 232 (471)
+...|...+.+... .+++++|...|++..+. .|+. ..|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556566655322 23467899999999875 4543 44544444433 23457899999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHH
Q 012108 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD-ITF 308 (471)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~ 308 (471)
.+ +.+...+..+...+...|++++|+..|++... .+...+..+...+...|++++|...+++.... .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 86 67888899999999999999999999998655 35668888999999999999999999999886 4443 233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHhh
Q 012108 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTES-ILGALLSACVI 385 (471)
Q Consensus 309 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 385 (471)
..++..+...|++++|...++++.+ ..+| ++..+..+..++...|++++|...+.++ ...|+.. ..+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~--~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRS--QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH--hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 3445556678999999999999886 2334 4556777888899999999999999987 4455544 44555556677
Q ss_pred cCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
.| ++|...++++.+..-. .+.....+...|.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4787777776664332 222233366677778888877776 8776654
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=3.2e-09 Score=98.88 Aligned_cols=398 Identities=12% Similarity=0.025 Sum_probs=251.6
Q ss_pred HHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCCCHHHHHHHHhcCCCC-----Ch
Q 012108 36 TIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK-----DV 107 (471)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~ 107 (471)
+.-..++.|..+|..+.-++.+.|+++.+-+.|++... .....|+.+...+...|.-..|+.+++.-... |+
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33344566778888888888888888888888887654 34567888888888888888888888776543 34
Q ss_pred hhHHHHHHHHHh-cCCHHHHHHHHhhcCC--------CChhhHHHHHHHHHhC-----------CCHHHHHHHHHhcccc
Q 012108 108 TSFNIMISGYAR-IGKIHSARYIFDKVPA--------KDVVSWNSLILAYTNA-----------GEMEKAGEMFKKMLVK 167 (471)
Q Consensus 108 ~~~~~l~~~~~~-~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~ 167 (471)
..+-...+.|.. .+.+++++.+-.+++. ..+..|..+.-+|... ....++.+.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 444444455543 4555555555444422 1333444444444322 1234566666666332
Q ss_pred ---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH
Q 012108 168 ---NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA 244 (471)
Q Consensus 168 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 244 (471)
|+.....+.--|...++.+.|.+..++..+.+-.-+...|..+.-.+...+++..|+.+.+...+.- +.|-.....
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 3333333444566778888888888888877656677778877777888888888888877765431 111111111
Q ss_pred HHHHHHhcCChHHHHHH-------Hh-------------------cCCC-----CC-hhhHHHHHHHHHhcCChHHHHHH
Q 012108 245 LIDMYAKCGSIEQSLEV-------FY-------------------KSQV-----KD-VFCWNAMILGLALHGYGYAALKL 292 (471)
Q Consensus 245 l~~~~~~~~~~~~a~~~-------~~-------------------~~~~-----~~-~~~~~~l~~~~~~~~~~~~a~~~ 292 (471)
-++.-...++.+++... |+ .+.- .+ +.++..+..-....+. .+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~--~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK--SAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh--hcccc
Confidence 11111223333333222 11 1100 01 1122222211111110 00000
Q ss_pred HHHHHhCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 012108 293 LGEMNDSCVKADD--------ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364 (471)
Q Consensus 293 ~~~~~~~~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 364 (471)
.. +....+.|.. ..+......+.+.++.++|...+.++.+ ..+-.+..|......+...|+.++|.+.|
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 00 1111122221 2344455667788999999988888887 55667778888888899999999999999
Q ss_pred HhC-CCCC-CHhHHHHHHHHHhhcCCchHHHH--HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 365 EAM-PFEP-TESILGALLSACVIHQDLEIGDR--VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 365 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
... -+.| ++....++...+.+.|+..-|.. ++..+.+.+|. ++..|..++..+.+.|+.++|.+-|....+....
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 877 4556 46788999999999999888888 99999999999 9999999999999999999999999988775543
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1.9e-10 Score=98.79 Aligned_cols=198 Identities=14% Similarity=0.083 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012108 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248 (471)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (471)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666655432 2233444455555555666666666666555543 3334444445555
Q ss_pred HHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHH
Q 012108 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK-ADDITFIGLLSACSHAGLVQEGCEL 327 (471)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 327 (471)
+...|++++|.+.+ ++....... .....+..+...+...|++++|.+.
T Consensus 109 ~~~~g~~~~A~~~~-------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQF-------------------------------EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHH-------------------------------HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554 444432111 1222334444455555555555555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
+.+..+ ..+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 158 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 158 LTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555554 22223444555555555555555555555544 11 22333444444555555566666555555443
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=3.8e-11 Score=100.16 Aligned_cols=237 Identities=13% Similarity=0.042 Sum_probs=157.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcC
Q 012108 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--K-DVFCWNAMILGLALHG 284 (471)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 284 (471)
+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|.++|.+..++..|+.+|.+... | |+.-..-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34555666666666666666655554 34455566666666666666666666655443 2 2222333445555566
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 012108 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364 (471)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 364 (471)
+.++|.++++...+.. +.+......+...|.-.++.+.|+.+++++.+ .|. -++..|+.+.-+|.-.++++-++..|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 6677777777666542 33444555555566666777777777777776 344 35566677777777777777777666
Q ss_pred HhC---CCCCC--HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 365 EAM---PFEPT--ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 365 ~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
++. --+|+ ..+|..+.......||+..|.+.|+-.+..+++ +...++.|+-.-.+.|++++|..+++......+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 665 11233 457777887788889999999999999999988 899999999999999999999999998887776
Q ss_pred cccCcceEEEE
Q 012108 440 VKTAGSSVIEV 450 (471)
Q Consensus 440 ~~~~~~~~~~~ 450 (471)
.--..++++.+
T Consensus 461 ~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 461 DMAEVTTNLQF 471 (478)
T ss_pred cccccccceeE
Confidence 65555554443
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=7.3e-11 Score=98.53 Aligned_cols=230 Identities=10% Similarity=-0.034 Sum_probs=197.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (471)
--+.+.++|.+.|.+.+|.+.++..++. .|-..||..|-+.|.+..+...|..++.+-.+.- |-++.......+.+-
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3467889999999999999999998875 5777889899999999999999999999988763 667767777888999
Q ss_pred hcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 012108 251 KCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327 (471)
Q Consensus 251 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 327 (471)
..++.++|.++|+...+ .++.+..++...|.-.++++-|+..++++...|+. ++..|+.+.-+|.-.+++|-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999987665 35666777788899999999999999999999966 788999999999999999999999
Q ss_pred HHHhHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 328 FSRMEKDFGVTRK--LEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 328 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
|+++.. .--.|+ ...|-.|.......|++.-|.+.|+-. ....+...++.|.-.-.+.|++++|..++..+....
T Consensus 381 f~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999887 233343 567888888889999999999999987 333456789999988899999999999999999888
Q ss_pred CC
Q 012108 404 NY 405 (471)
Q Consensus 404 ~~ 405 (471)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 77
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=2.2e-10 Score=110.57 Aligned_cols=243 Identities=11% Similarity=0.002 Sum_probs=175.1
Q ss_pred CCHHHHHHHHHhccc--c-ChHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 012108 152 GEMEKAGEMFKKMLV--K-NVITWNTMVTGYL---------RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219 (471)
Q Consensus 152 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 219 (471)
+++++|.+.|++... | +...|..+..++. ..+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 457899999999844 3 3455666655544 2345889999999998864 3356677777778889999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 012108 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEM 296 (471)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (471)
+++|...++++.+.+ |.+...+..+...+...|++++|+..+++...- +...+..++..+...|++++|...++++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999986 667788889999999999999999999987653 2233444555677789999999999998
Q ss_pred HhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC
Q 012108 297 NDSCVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEP 371 (471)
Q Consensus 297 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p 371 (471)
.... +| +...+..+..++...|+.++|.+.+.++.. ..+.+....+.+...|...| ++|...++.+ ...|
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7653 34 445567778888899999999999998876 33334555566666777777 4666666655 2233
Q ss_pred CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
....+..+ .+.-.|+.+.+..+ +++.+.+.
T Consensus 508 ~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPGLLPL--VLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCchHHHH--HHHHHhhhHHHHHH-HHhhccch
Confidence 33333333 35556777777666 77776553
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=3.5e-10 Score=104.16 Aligned_cols=241 Identities=14% Similarity=0.087 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHc-----C--C
Q 012108 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAG-----NV-KPDYLT-VTSVLSACANLGSLETGARIHVYATDN-----G--L 235 (471)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~ 235 (471)
.+...+...|...|+++.|..+++..++. |. .|...+ .+.+...|...+++++|..+|+.+... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555888899999999999998887653 21 233222 233555667777788877777776542 2 1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 012108 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDI-TFIGLLSA 314 (471)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~ 314 (471)
+.-..+++.|..+|.+.|++++|...+ +.|++++++.... ..|... .++.+...
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~~~~~-~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEKLLGA-SHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHHhhcc-ChHHHHHHHHHHHHH
Confidence 112345556666677777777766664 3445555552111 122222 35556677
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--CCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhHHHH
Q 012108 315 CSHAGLVQEGCELFSRMEKDFG--VTR----KLEHYGCMVDLLGRARLLDRAIELIEAM---------PFEPT-ESILGA 378 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 378 (471)
|...+++++|..++++..+... ..+ -..+++.|...|.+.|++++|.++++++ +..+. ...++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 7888888888888877665222 112 2467888888899999999998888876 11222 446778
Q ss_pred HHHHHhhcCCchHHHHHHHHHHH----cCCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCA----KSNYL--SDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
+...|.+.+.+.+|.++|.+... .||.- ...+|..|+.+|.+.|+++.|.++.+.+.
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88888888999988888876554 35441 23567789999999999999999988775
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-08 Score=88.25 Aligned_cols=268 Identities=10% Similarity=-0.020 Sum_probs=169.5
Q ss_pred cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHH
Q 012108 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT-VTSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243 (471)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 243 (471)
...|+.....+..++...|+.++|...|++.+.. .|+..+ .......+.+.|+.+....+...+.... .-+...|.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3347777777888888888888888888776653 343322 1112223345666666666655554432 22233333
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 012108 244 ALIDMYAKCGSIEQSLEVFYKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320 (471)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 320 (471)
.-+.......++..|+.+-++..+- +...+-.-...+...|++++|.-.|+..+.. -+-+...|..|+.+|...|+
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhch
Confidence 3334445566777777777765553 3344444445677778888888888877664 13356678888888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHh-hcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHhhcCCchHHHHHH
Q 012108 321 VQEGCELFSRMEKDFGVTRKLEHYGCMV-DLLG-RARLLDRAIELIEAM-PFEPTE-SILGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 396 (471)
+.+|...-+...+ -++.+..+...+. ..+. .-.--++|.+++++. .+.|+- ...+.+...|...|..+.++.++
T Consensus 384 ~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 8888777666665 3444455544442 2222 222346777777765 566653 45566666777788888888888
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 397 KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
++.+...+ |......|++.+...+.+++|++.|......+|.
T Consensus 462 e~~L~~~~--D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 462 EKHLIIFP--DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHhhcc--ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 88776655 4777788888888888888888888777766654
No 68
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=3.4e-09 Score=87.63 Aligned_cols=414 Identities=12% Similarity=0.075 Sum_probs=265.8
Q ss_pred CcccCCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CCccc
Q 012108 1 MQELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDIIA 78 (471)
Q Consensus 1 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 78 (471)
|...|+.....-+.+++..+.+-.+++.|.+++..-.+.. +.+....+.+..+|-+..++..|-..++++.. |...-
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q 79 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ 79 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 6778888888889999999999999999999999888775 33777888889999999999999999999865 55555
Q ss_pred HHH-HHHHHHcCCCHHHHHHHHhcCCCCChhhHHH----HHHHHHhcCCHHHHHHHHhhcC-CCChhhHHHHHHHHHhCC
Q 012108 79 WNS-MLDAFASCGQMDHAMKLIDLMPLKDVTSFNI----MISGYARIGKIHSARYIFDKVP-AKDVVSWNSLILAYTNAG 152 (471)
Q Consensus 79 ~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~ 152 (471)
|.. -...+-+.+.+..|+++...|... +...+. -.......+++..+..+.++.. +.+..+.+.......+.|
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc
Confidence 543 256677889999999999988864 222222 2223446788888999999887 466777777777778899
Q ss_pred CHHHHHHHHHhcccc----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHccCChHHH
Q 012108 153 EMEKAGEMFKKMLVK----NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS-----VLSACANLGSLETG 223 (471)
Q Consensus 153 ~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-----l~~~~~~~~~~~~a 223 (471)
+++.|.+-|+...+- ....||.-+ +..+.|+++.|++...++.++|++-... +++ .+.+ ...|+.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt--- 232 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT--- 232 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---
Confidence 999999999887432 345666544 4556788999999999998887642211 110 0000 000110
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012108 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-----DVFCWNAMILGLALHGYGYAALKLLGEMND 298 (471)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (471)
..+. .++ -...+|.-...+.+.|+++.|.+.+-.|+++ |+++...+.-.= ..+++.+..+-+.-+..
T Consensus 233 ~~lh----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 233 LVLH----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred HHHH----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 0000 000 1234454555677889999999999998874 667766554322 24556666666666666
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHH
Q 012108 299 SCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT-RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377 (471)
Q Consensus 299 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 377 (471)
.+ +-...||..++-.||+..-++.|-.++.+-.. ..+. .+...|+.|=..-...-.+++|++-++.+...-....-.
T Consensus 305 ~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRk 382 (459)
T KOG4340|consen 305 QN-PFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRK 382 (459)
T ss_pred cC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 34567899999999999999999888765443 1111 234445443333334466777776665541000011111
Q ss_pred HHHHHHh-hcCC----chHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 378 ALLSACV-IHQD----LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 378 ~l~~~~~-~~g~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
..+..-. +..+ ...+++-+++.++.- -.+....++.|.+..++..+.++|..-.+
T Consensus 383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1111111 1111 122333344444332 23555667788899999999999987654
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=4.8e-08 Score=89.49 Aligned_cols=417 Identities=13% Similarity=0.041 Sum_probs=271.6
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCC
Q 012108 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCG 90 (471)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 90 (471)
..++. |-..+++...+.+.+.+++.- +-...+.....-.+...|+.++|......... .+.++|+.+.-.+-...
T Consensus 12 ~~~lk-~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALK-CYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHH-HHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 33444 445688899999999988853 33444444444445567999999988887665 45678999888888889
Q ss_pred CHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHhc
Q 012108 91 QMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKM 164 (471)
Q Consensus 91 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 164 (471)
++++|++.|.....- |...+.-+.-.-++.|+++.....-.+..+ .....|..++.++.-.|+...|..+++..
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887643 667777777777888888877776666643 34567888888888999999999998887
Q ss_pred cc-----cChHHHHHH------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHH
Q 012108 165 LV-----KNVITWNTM------VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV-TSVLSACANLGSLETGARIHVYATD 232 (471)
Q Consensus 165 ~~-----~~~~~~~~l------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (471)
.+ ++...+... .......|.++.|++.+..-... ..|...+ ..-...+.+.++.++|..++..++.
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 22 344333322 23456678888888887665432 2233333 2344567789999999999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHH-HHHhcCCCC-C-hhhHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 012108 233 NGLASNPHATTALIDMYAKCGSIEQSL-EVFYKSQVK-D-VFCWNAM-ILGLALHGYGYAALKLLGEMNDSCVKADDITF 308 (471)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~-~-~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 308 (471)
.+ |.+...|..+..++.+-.+.-++. .+|...... . ...-..+ +.......-.+..-.++..+...|+++- +
T Consensus 248 rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f 323 (700)
T KOG1156|consen 248 RN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---F 323 (700)
T ss_pred hC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---h
Confidence 85 444555555556665333333333 556554431 0 0000000 1111112223444556677777787653 3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhc-C------------CCCChhHH--HHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 012108 309 IGLLSACSHAGLVQEGCELFSRMEKDF-G------------VTRKLEHY--GCMVDLLGRARLLDRAIELIEAM-PFEPT 372 (471)
Q Consensus 309 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 372 (471)
..+...|-.....+-..++.-.+.... | -+|++..| -.+++.+-+.|+++.|...++.. +..|+
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT 403 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch
Confidence 333333333222221111111111100 1 14555444 35667788999999999999987 66776
Q ss_pred H-hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 373 E-SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 373 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
. ..|..=.+.+...|++++|..+++++.+.+.. |...-..-+.-..+..+.++|.++.....+.|.
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 4 45666667788899999999999999998876 666666788888899999999999998877764
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.5e-08 Score=86.41 Aligned_cols=272 Identities=10% Similarity=-0.047 Sum_probs=208.9
Q ss_pred CCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012108 134 PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT---WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210 (471)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 210 (471)
.+.++.....+.+++...|+.++|+..|++...-|+.+ .......+.+.|++++...+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 44578888999999999999999999999985444433 2333445567888988888888776532 1233334444
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChH
Q 012108 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGY 287 (471)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 287 (471)
+......+++..|..+-++.++.. +.+...+-.-..++...++.++|.-.|+.... -+..+|.-|+..|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 445556788999999999888776 56677777777889999999999999987554 37889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHH
Q 012108 288 AALKLLGEMNDSCVKADDITFIGLL-SACS-HAGLVQEGCELFSRMEKDFGVTRK-LEHYGCMVDLLGRARLLDRAIELI 364 (471)
Q Consensus 288 ~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 364 (471)
+|.-+-+..... ++.+..+...+. ..|. ...--++|..++++..+ ..|+ ....+.+...+...|..+.+..++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 999887776554 344555665553 3333 33445778888888775 3454 666778888999999999999999
Q ss_pred HhC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHH
Q 012108 365 EAM-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412 (471)
Q Consensus 365 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (471)
++. ...||....+.|...+...+.+++|...|..++..+|+ +..+..
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl~ 509 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTLR 509 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHHH
Confidence 987 67899999999999999999999999999999999998 555443
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1.8e-09 Score=99.59 Aligned_cols=239 Identities=16% Similarity=0.140 Sum_probs=148.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHhcccc----------ChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CC
Q 012108 139 VSWNSLILAYTNAGEMEKAGEMFKKMLVK----------NVI-TWNTMVTGYLRSQLYIEVVDLFDEMKAG-----N-VK 201 (471)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~ 201 (471)
.+...+...|...|++++|+.+++..... .+. ..+.+...|...+++++|..+|+++..- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555777888888888888888776322 222 2345777888999999999999998652 2 12
Q ss_pred CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhH
Q 012108 202 PD-YLTVTSVLSACANLGSLETGARIHVYATDNG------LASN-PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCW 273 (471)
Q Consensus 202 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 273 (471)
|. ..+++.|..+|.+.|++++|...++.+.+.- ..|. ...++.+...++..+++++|..++++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~--------- 350 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK--------- 350 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH---------
Confidence 22 2456677778999999999998888765421 0111 12233344444455555555544431
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC--CC-ChhHHHHH
Q 012108 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF---GV--TR-KLEHYGCM 347 (471)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~--~~-~~~~~~~l 347 (471)
+.+++.......-.--..+++.+...|...|++++|.++++++.... +. .+ .-..++.|
T Consensus 351 ---------------al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 351 ---------------ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ---------------HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 12222211111001123467777778888888888888877776522 11 11 23455667
Q ss_pred HHHHhhcCCHHHHHHHHHhC--------CCCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 348 VDLLGRARLLDRAIELIEAM--------PFEPT-ESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77777777777777777664 23344 35888899999999999999998887763
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=5.3e-12 Score=78.08 Aligned_cols=50 Identities=32% Similarity=0.631 Sum_probs=42.8
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 012108 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216 (471)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 216 (471)
||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=4.4e-08 Score=83.23 Aligned_cols=375 Identities=12% Similarity=0.033 Sum_probs=239.6
Q ss_pred HHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHH
Q 012108 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKL 98 (471)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 98 (471)
.+.+.|++++|...+..+.+.. .++...+-.+.-.+.-.|.+.+|..+-.+..+ ++..-..|.....+.|+-++-..+
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHH
Confidence 3557899999999999988755 45666666677777778999999998776543 333445566666777877776666
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--hhHHH-HHHHHHhCCCHHHHHHHHHhcc---ccChHHH
Q 012108 99 IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDV--VSWNS-LILAYTNAGEMEKAGEMFKKML---VKNVITW 172 (471)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~-l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~ 172 (471)
-..+.... +.-.++.......-.+.+|+.++..+...++ ...+. +.-+|.+..-++-+.++++--. ..++.+.
T Consensus 144 h~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 144 HSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred HHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH
Confidence 55554332 3334455555555678889999988855433 23332 3345667777777766665552 2234444
Q ss_pred HHHHHHHHhc--CC---------------------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 012108 173 NTMVTGYLRS--QL---------------------------------YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217 (471)
Q Consensus 173 ~~l~~~~~~~--~~---------------------------------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 217 (471)
|..+....+. |+ -+.|++++-.+.+ +-|. .-..++--|.+.
T Consensus 223 NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPE--ARlNL~iYyL~q 298 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPE--ARLNLIIYYLNQ 298 (557)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hChH--hhhhheeeeccc
Confidence 4443333221 11 1222222222221 1111 222344456788
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-------ChHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCC
Q 012108 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCG-------SIEQSLEVFYKSQV-----KDVFCWNAMILGLALHGY 285 (471)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 285 (471)
+++++|..+.+++. |.++.-|-.-.-.+...| ++.-|.+.|+-... ..+.--.++.+.+.-..+
T Consensus 299 ~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 299 NDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred ccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence 99999988876652 333333332222233333 35556666664433 234456677788888889
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 012108 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365 (471)
Q Consensus 286 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 365 (471)
+++++..++....- ..-|......+.++.+..|++.+|+++|-.+.. ..++.+......|.++|.++++++-|.+++-
T Consensus 375 FddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 375 FDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 99999999988875 333444445588999999999999999988876 2333344444566789999999999999999
Q ss_pred hCCCCCCHhHHHHH-HHHHhhcCCchHHHHHHHHHHHcCCCC
Q 012108 366 AMPFEPTESILGAL-LSACVIHQDLEIGDRVAKMVCAKSNYL 406 (471)
Q Consensus 366 ~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~ 406 (471)
++.-+.+..+...+ ...|-+.+.+=-|-+.|+.+...+|.|
T Consensus 453 k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 453 KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 98655555555444 456889999988999999988888763
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=3.5e-08 Score=92.32 Aligned_cols=410 Identities=11% Similarity=0.047 Sum_probs=245.3
Q ss_pred HHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CCcccH-HHHHHHHHcC---
Q 012108 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDIIAW-NSMLDAFASC--- 89 (471)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~--- 89 (471)
-...+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+.+ |+-..| ..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345567889999999999876544 444566778889999999999999999999986 544444 4444444222
Q ss_pred --CCHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCCHH-HHHHHHhhcCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHh
Q 012108 90 --GQMDHAMKLIDLMPLKDVT--SFNIMISGYARIGKIH-SARYIFDKVPAKD-VVSWNSLILAYTNAGEMEKAGEMFKK 163 (471)
Q Consensus 90 --g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 163 (471)
.+.+...++++++...-+. ....+.-.+.....+. .+...+....... +.+|+.+-..|....+.+-..+++..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 2567777777776433111 1111111111111111 1222222222222 34566666666655555444555544
Q ss_pred cc------------------ccCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHH
Q 012108 164 ML------------------VKNV--ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD-YLTVTSVLSACANLGSLET 222 (471)
Q Consensus 164 ~~------------------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~ 222 (471)
.. .|+. .++..+...|...|++++|++++++.++. .|+ ...|..-.+.+-+.|++++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 31 1222 34566788899999999999999999886 465 5567778889999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh----------hH--HHHHHHHHhcCChHHHH
Q 012108 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF----------CW--NAMILGLALHGYGYAAL 290 (471)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~~~a~ 290 (471)
|.+.++...+.. .-|..+-+..+..+.+.|++++|.+++.....++.. .| .....+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999887 677788888889999999999999998776654311 22 34567889999998888
Q ss_pred HHHHHHHhC--CC---CCCH----------HHHHHHHHHHhccC---c----HHHHHHHHHHhHHhcCCCCC--------
Q 012108 291 KLLGEMNDS--CV---KADD----------ITFIGLLSACSHAG---L----VQEGCELFSRMEKDFGVTRK-------- 340 (471)
Q Consensus 291 ~~~~~~~~~--~~---~p~~----------~~~~~l~~~~~~~~---~----~~~a~~~~~~~~~~~~~~~~-------- 340 (471)
+.|....+. .+ .-|- .+|..+++..-+.. . ...|.+++-.+.........
T Consensus 326 k~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~ 405 (517)
T PF12569_consen 326 KRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNE 405 (517)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccc
Confidence 877665432 01 2222 23333333221111 1 23344555444441110000
Q ss_pred ---hhHHHHHHHHH---hhcCCHHHHHHHH-H----------hC----CCCCCHhHHHHHHHHHhh-cCCchHHHHHHHH
Q 012108 341 ---LEHYGCMVDLL---GRARLLDRAIELI-E----------AM----PFEPTESILGALLSACVI-HQDLEIGDRVAKM 398 (471)
Q Consensus 341 ---~~~~~~l~~~~---~~~g~~~~A~~~~-~----------~~----~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 398 (471)
..--..+..-. .+...-+++...- + +. +.+.|... +...+.+ ..-+++|.++++-
T Consensus 406 ~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A~kfl~p 482 (517)
T PF12569_consen 406 NMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEAMKFLKP 482 (517)
T ss_pred cCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHHHHHHHH
Confidence 00000111000 0111111111110 0 00 11112111 1122223 3457889999999
Q ss_pred HHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 399 VCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (471)
+.+..++ +..+|..-...|.+.|++--|.+.+.+
T Consensus 483 L~~~a~~-~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 483 LLELAPD-NIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhCcc-chhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999 999999999999999999998887654
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=7.6e-09 Score=96.67 Aligned_cols=128 Identities=14% Similarity=0.079 Sum_probs=79.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHh
Q 012108 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFE-PTESILGALLSACV 384 (471)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 384 (471)
++..+...|...|++++|++++++..+ ..|..+..|..-...|-+.|++++|.+.++.. ... -|..+-+-....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 344455666677777777777777776 22223666666677777777777777777666 222 34455555556666
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCchhH--------HHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 385 IHQDLEIGDRVAKMVCAKSNYLSDGEL--------MMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
+.|++++|.+++......+..|....+ ...+.+|.+.|++..|+..|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777766655533222211 2456677778887777776655543
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.3e-11 Score=76.28 Aligned_cols=50 Identities=32% Similarity=0.410 Sum_probs=41.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 012108 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317 (471)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 317 (471)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57778888888888888888888888888888888888888888888764
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=1.4e-09 Score=96.06 Aligned_cols=217 Identities=12% Similarity=-0.002 Sum_probs=131.2
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 012108 181 RSQLYIEVVDLFDEMKAGN-VKPD--YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257 (471)
Q Consensus 181 ~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (471)
..++.+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. +.++..|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3455667777777776532 1222 2345666667777788888888888877765 5567777888888888888888
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 012108 258 SLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334 (471)
Q Consensus 258 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (471)
|...|++..+ .+..+|..+...+...|++++|.+.+++..+. .|+..........+...++.++|...|.+...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 8887776544 24566777777777778888888888777764 34332111222223445677788777766554
Q ss_pred cCCCCChhHHHHHHHHHhhcCCH--HHHHHHHHhC-CC----CC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 335 FGVTRKLEHYGCMVDLLGRARLL--DRAIELIEAM-PF----EP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
...|+...+ .+...+ .|+. +++.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++.+.+|.
T Consensus 194 -~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 -KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred -hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 223332222 222222 3333 2233222221 11 11 2346777777777778888888888777777764
No 78
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=9.9e-08 Score=87.34 Aligned_cols=389 Identities=11% Similarity=0.079 Sum_probs=248.5
Q ss_pred hHHHHHHHHHhccCCHhHHHHHhcccCC-----CCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 012108 46 YVQTALLKMYGSLRCIDDAFKVFEKMPE-----KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120 (471)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 120 (471)
..|...+..+..+|++...+..|++... .....|...+......|-++-+..+++...+-++..-+--+..++..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3556666777788888888888887553 34567888888888888888999999988888888888888889999
Q ss_pred CCHHHHHHHHhhcCCC----------ChhhHHHHHHHHHhCCC---HHHHHHHHHhcccc----ChHHHHHHHHHHHhcC
Q 012108 121 GKIHSARYIFDKVPAK----------DVVSWNSLILAYTNAGE---MEKAGEMFKKMLVK----NVITWNTMVTGYLRSQ 183 (471)
Q Consensus 121 g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~ 183 (471)
+++++|.+.+...... +...|..+-+..++.-+ --...++++.+... -...|++|...|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 9999998888888543 23345555444444322 12233445554332 3357889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----------------C------ChHHHHHHHHHHHHcC-------
Q 012108 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL----------------G------SLETGARIHVYATDNG------- 234 (471)
Q Consensus 184 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~------- 234 (471)
.++.|..+|++.... ..+..-|..+.++|+.- + +++-...-|+.+...+
T Consensus 263 ~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 999999999987764 23444444444444321 1 1222333344433322
Q ss_pred ----CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 012108 235 ----LASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-------K--DVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301 (471)
Q Consensus 235 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 301 (471)
-+.++..|..-+. +..|+..+-...|.+... + -...|..+...|-..|+.+.|..+|++......
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 1222333333222 223555555555544332 1 235688888999999999999999999887543
Q ss_pred CCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----------------ChhHHHHHHHHHhhcCCHHHHH
Q 012108 302 KAD---DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR-----------------KLEHYGCMVDLLGRARLLDRAI 361 (471)
Q Consensus 302 ~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~g~~~~A~ 361 (471)
+-- ..+|..-...=.+..+++.|+.+.+.+... .-.| +...|..+++.--..|-++...
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 211 233444445555778888998888887751 1111 2334556666666778888888
Q ss_pred HHHHhC-CCC-CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHh---cCCHHHHHHHHHHhh
Q 012108 362 ELIEAM-PFE-PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD-GELMMFANLYAS---CGQWEEANRWRNMMN 435 (471)
Q Consensus 362 ~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~m~ 435 (471)
.+++++ .++ -++.........+-.+.-++++.+++++-+.+-+.|+. ..|+..+..+.+ ..+.+.|..+|++.+
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 888877 111 12333333333455677889999999998888777554 466665555443 346899999999999
Q ss_pred hCCC
Q 012108 436 DTGI 439 (471)
Q Consensus 436 ~~~~ 439 (471)
+.-+
T Consensus 578 ~~Cp 581 (835)
T KOG2047|consen 578 DGCP 581 (835)
T ss_pred hcCC
Confidence 8433
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.3e-07 Score=85.71 Aligned_cols=379 Identities=13% Similarity=0.042 Sum_probs=233.1
Q ss_pred HHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHH
Q 012108 52 LKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNIMISGYARIGKIHSA 126 (471)
Q Consensus 52 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 126 (471)
++.+...|++++|.+...++.. .+...+..-+-++++.+++++|+.+.+.-... +...+..-+.+..+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 5667788999999999998775 35566777788889999999999887765532 222222335566789999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHH
Q 012108 127 RYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS-QLYIEVVDLFDEMKAGNVKPDYL 205 (471)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~ 205 (471)
...++-....|..+...-...+.+.|++++|.++|+.+.+.+...+...+.+-+.. +--..+. + +......| ..
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~---~q~v~~v~-e~ 173 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-L---LQSVPEVP-ED 173 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-H---HHhccCCC-cc
Confidence 99999666666667777778899999999999999999777666655544432211 1111111 1 22222334 33
Q ss_pred HHHHHHH---HHHccCChHHHHHHHHHHHHcCC-------CC--c-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012108 206 TVTSVLS---ACANLGSLETGARIHVYATDNGL-------AS--N-----PHATTALIDMYAKCGSIEQSLEVFYKSQVK 268 (471)
Q Consensus 206 ~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~-------~~--~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (471)
+|..+.+ .+...|++.+|+++++...+.+. .. + ..+-..|.-++-..|+.++|.+++..+...
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 5555444 34578999999999999832210 01 0 112334556677899999999988765431
Q ss_pred ---Ch----hhHHHHHHH-----------------------------H----------------HhcCChHHHHHHHHHH
Q 012108 269 ---DV----FCWNAMILG-----------------------------L----------------ALHGYGYAALKLLGEM 296 (471)
Q Consensus 269 ---~~----~~~~~l~~~-----------------------------~----------------~~~~~~~~a~~~~~~~ 296 (471)
|. ++-|.++.. + .-.+..+.+.++....
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 11 011111110 0 0001111111111111
Q ss_pred HhCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH--------
Q 012108 297 NDSCVKADDITFIGLLSACS--HAGLVQEGCELFSRMEKDFGVTRK-LEHYGCMVDLLGRARLLDRAIELIE-------- 365 (471)
Q Consensus 297 ~~~~~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~-------- 365 (471)
. +..|. ..+..++..+. +...+..+.+++....+ +.+.+ ......+++.....|+++.|.+++.
T Consensus 334 p--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 334 P--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred C--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 1 12233 23344443332 22357778888887776 44444 5566677888899999999999998
Q ss_pred hC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC----CC--CCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 366 AM-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS----NY--LSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 366 ~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
.+ .+.-.+.+...+...+.+.++.+.|..++.+++.-- +. --..++..++..-.+.|+-++|..+++++.+.+
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 33 233444555566667778887777777776665421 11 012233344455567899999999999998866
Q ss_pred Cc
Q 012108 439 IV 440 (471)
Q Consensus 439 ~~ 440 (471)
+.
T Consensus 489 ~~ 490 (652)
T KOG2376|consen 489 PN 490 (652)
T ss_pred Cc
Confidence 54
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=8.9e-09 Score=91.03 Aligned_cols=212 Identities=10% Similarity=-0.022 Sum_probs=120.6
Q ss_pred ChHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHH
Q 012108 219 SLETGARIHVYATDNG-LAS--NPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKL 292 (471)
Q Consensus 219 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 292 (471)
..+.+..-+.+++... ..| ....|..+...|...|+.++|...|++... .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4445555555555432 111 234566666777777777777777766443 3556777777777777777777777
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 012108 293 LGEMNDSCVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PF 369 (471)
Q Consensus 293 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 369 (471)
|++..+. .| +...+..+..++...|++++|.+.|++..+. .|+..........+...+++++|.+.|.+. ..
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 7777764 33 3455666666677777777777777777662 232211112222234456677777777554 22
Q ss_pred CCCHhHHHHHHHHHhhcCCchHHHHHHHHHH-------HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 370 EPTESILGALLSACVIHQDLEIGDRVAKMVC-------AKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 370 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
.|+...+ .......|+...+ ..++.+. +.+|+ ....|..++..+.+.|++++|...|++..+.++.
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 2222221 1222234554443 2333333 22333 4456777777777777777777777777766543
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=4.9e-10 Score=89.27 Aligned_cols=197 Identities=13% Similarity=0.017 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 012108 240 HATTALIDMYAKCGSIEQSLEVFYKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316 (471)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 316 (471)
.+...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|....-+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 35566777888888888888888877664 34577778888888888888888888887752 224456777777778
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHH
Q 012108 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDR 394 (471)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 394 (471)
..|++++|.+.|+++.......--..+|..+.-+..+.|+++.|.+.|++. ...| .+.+...+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888875444445677888888888888888888888876 3334 35567777777888888888888
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 395 VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
.++.....++ ++...+...++.-.+.|+.+.+-++=.++.+.-
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888887777 478888778888888888887777666665443
No 82
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=3.9e-10 Score=106.19 Aligned_cols=245 Identities=11% Similarity=0.083 Sum_probs=170.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 012108 190 DLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD 269 (471)
Q Consensus 190 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 269 (471)
.++..+...|+.|+.+||..+|..||..|+++.|- +|.-|.-...+.+...++.++.+....++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35667888899999999999999999999999999 9999988888889999999999998888877665 678
Q ss_pred hhhHHHHHHHHHhcCChHH---HHHHHHHH----HhCCCCCCHHHHHHHHHH--------------HhccCcHHHHHHHH
Q 012108 270 VFCWNAMILGLALHGYGYA---ALKLLGEM----NDSCVKADDITFIGLLSA--------------CSHAGLVQEGCELF 328 (471)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~p~~~~~~~l~~~--------------~~~~~~~~~a~~~~ 328 (471)
..+|+.|..+|...|+... +.+.+... ...|+.....-+-..+.+ ....|-++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998654 33322222 122332222222222222 12223344444444
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCC
Q 012108 329 SRMEKDFGVTRKLEHYGCMVDLLG-RARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS 407 (471)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 407 (471)
..+-......|... .++-.. ....+++-..+.+.....|++.+|..++.+-...|+.+.|..++..|.+.|...+
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 33322111111111 122222 2234455555555554479999999999999999999999999999999998767
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCcceEEE
Q 012108 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIE 449 (471)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 449 (471)
+..|..|+.. .|+..-+..++.-|...|+.|+..+.-..
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 7766666655 78888888999999999999998775433
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=8.9e-08 Score=90.03 Aligned_cols=276 Identities=16% Similarity=0.182 Sum_probs=152.4
Q ss_pred hccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC-CCcccHHHHHHHHHcCCCHHHHHHHHh
Q 012108 22 ILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE-KDIIAWNSMLDAFASCGQMDHAMKLID 100 (471)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 100 (471)
..|.+++|+.+|.+.++.. .|=..|...|.+++|.++-+.-.+ .-..||.....-+-..++.+.|++.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 4566666766666665432 233445556777777766554222 112345555555555667777777776
Q ss_pred cCCCC-----------------------ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHH
Q 012108 101 LMPLK-----------------------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157 (471)
Q Consensus 101 ~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 157 (471)
+...+ |+..|.....-+...|+.+.|+.+|... .-|-++++..|-.|+.++|
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchHH
Confidence 65422 4444555555555666666666666543 2345556666666777776
Q ss_pred HHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-------------H--ccCChHH
Q 012108 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC-------------A--NLGSLET 222 (471)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-------------~--~~~~~~~ 222 (471)
-++-++ ..|..+...+.+.|-..|++.+|...|.+.+. +...|+.| . ...+.-.
T Consensus 958 a~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~ 1026 (1416)
T KOG3617|consen 958 ARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVS 1026 (1416)
T ss_pred HHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHH
Confidence 666655 33566677788888889999999888877643 22222222 1 1222333
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--------------CChhhHHHHHHHHHhcCChHH
Q 012108 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--------------KDVFCWNAMILGLALHGYGYA 288 (471)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~ 288 (471)
|.++|++. |. -+..-+..|-+.|.+.+|+++--+-.+ .|+...+.-...++...++++
T Consensus 1027 aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1027 AARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred HHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence 34444432 11 122234566777777777765322211 245555555555566666666
Q ss_pred HHHHHHHHH----------hCCC----------------CCCH----HHHHHHHHHHhccCcHHHHHHHHHH
Q 012108 289 ALKLLGEMN----------DSCV----------------KADD----ITFIGLLSACSHAGLVQEGCELFSR 330 (471)
Q Consensus 289 a~~~~~~~~----------~~~~----------------~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (471)
|..++-..+ .+|+ .|+. .....+...|.++|.+..|-+-|-+
T Consensus 1099 AV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1099 AVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 655543221 1111 2222 3355667788888888777655443
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.21 E-value=2.8e-10 Score=98.96 Aligned_cols=249 Identities=13% Similarity=0.043 Sum_probs=137.3
Q ss_pred HHHHhCCCHHHHHHHHHhc---cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 012108 146 LAYTNAGEMEKAGEMFKKM---LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222 (471)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 222 (471)
+-+.-.|++..++.-.+.- ...+......+.+++...|+++.++. ++.... .|.......+...+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3455667777777555411 11123344556677778887765543 332222 5555555444444443344444
Q ss_pred HHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 012108 223 GARIHVYATDNGLA-SNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV 301 (471)
Q Consensus 223 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 301 (471)
+..-++........ .+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 44444333322222 23333333335556677788887777665 45555666677777778888888777777764
Q ss_pred CCCHHHHHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhH
Q 012108 302 KADDITFIGLLSACS----HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESI 375 (471)
Q Consensus 302 ~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~ 375 (471)
..| .+...+..++. ..+++..|..+|+++.. .+++++.+.+.+..++...|++++|.+++.+. . .+.++.+
T Consensus 161 ~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 223 33444444432 23357777777777765 45566677777777777777777777777665 2 2234556
Q ss_pred HHHHHHHHhhcCCc-hHHHHHHHHHHHcCCC
Q 012108 376 LGALLSACVIHQDL-EIGDRVAKMVCAKSNY 405 (471)
Q Consensus 376 ~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~ 405 (471)
+..++.+....|+. +.+.+.+.++....|.
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 66666666666665 5566677776666654
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=1.6e-07 Score=87.86 Aligned_cols=395 Identities=12% Similarity=0.010 Sum_probs=260.9
Q ss_pred CCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCC--c---ccH
Q 012108 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD--I---IAW 79 (471)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~~~ 79 (471)
.++-|+..|-.|--++...|+++.+.+.|++....-+ .....|..+...|...|.-..|..+++.-..+. + ..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3566788899999999999999999999999876543 355678888999999999999999999865422 3 233
Q ss_pred HHHHHHHH-cCCCHHHHHHHHhcCCCC--------ChhhHHHHHHHHHhcC-----------CHHHHHHHHhhcCC---C
Q 012108 80 NSMLDAFA-SCGQMDHAMKLIDLMPLK--------DVTSFNIMISGYARIG-----------KIHSARYIFDKVPA---K 136 (471)
Q Consensus 80 ~~li~~~~-~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~---~ 136 (471)
-..-..|. +.|..++++++-.+.... .+..|..+.-+|...- ...++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333343 346677766665554431 4556666666655331 24566777777733 3
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHhcc----ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 012108 137 DVVSWNSLILAYTNAGEMEKAGEMFKKML----VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD-YLTVTSVL 211 (471)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~ 211 (471)
|+.+...+.--|+..++++.|.+..++.. ..++..|..+.-.+...+++.+|+.+.+...+. .|+ ......-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhh
Confidence 44444444556788899999999988873 347889999999999999999999999887653 111 11000111
Q ss_pred HHHHccCChHHHHHHHHHHHH---------------------cC-------CCCchhHHHHHHHHHHhcCC---hHHHHH
Q 012108 212 SACANLGSLETGARIHVYATD---------------------NG-------LASNPHATTALIDMYAKCGS---IEQSLE 260 (471)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~---------------------~~-------~~~~~~~~~~l~~~~~~~~~---~~~a~~ 260 (471)
..-...++.+++......+.. .| ....+.++..+.......+. .+..+.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 111123333333332222110 11 01112233322222221111 111111
Q ss_pred HHhcCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 012108 261 VFYKSQVKD------VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334 (471)
Q Consensus 261 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (471)
.+.....++ ...|......+.+.+..++|...+.+.... .+.....|......+...|++.+|.+.|.....
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~- 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA- 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh-
Confidence 111111122 234666677888999999999988888765 344556777777888889999999999998886
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 335 FGVTRKLEHYGCMVDLLGRARLLDRAIE--LIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
-.|.++.+..++..++...|+..-|.. ++.++ .+.| +...|..+...+.+.|+.+.|...|....+..+.
T Consensus 713 -ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 713 -LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred -cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 344458888999999999998888877 88777 5556 5789999999999999999999999999998766
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=1.4e-08 Score=81.16 Aligned_cols=195 Identities=14% Similarity=-0.022 Sum_probs=118.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcC
Q 012108 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHG 284 (471)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 284 (471)
..+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++... .+..+.|.....+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 344455666666666666666666654 44555666666666666666666666665333 34556666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 012108 285 YGYAALKLLGEMNDSCVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363 (471)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 363 (471)
++++|...|++....-.-| ...+|..+.-+..+.|+.+.|...|++..+ -.+..+.....+.......|++-.|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 6677776666666542222 234566666666667777777777776665 3333455566666666667777777666
Q ss_pred HHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 364 IEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 364 ~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
++.. +..++...+...|..-...|+.+.+-+.=.++...-|.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 6665 33456666656666666667776666666666655554
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=6.3e-07 Score=82.39 Aligned_cols=408 Identities=11% Similarity=0.015 Sum_probs=252.9
Q ss_pred HHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCCCHHHH
Q 012108 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCGQMDHA 95 (471)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 95 (471)
.+...|+.++|......-++.. ..+.+.|..+.-.+....++++|++.|..... .|...|..+.-.-++.|+++..
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 3556788899999988888765 34777888888888888999999999998764 4666777777777788888877
Q ss_pred HHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHH------HHHHhCCCHHHHHHHH
Q 012108 96 MKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVP-----AKDVVSWNSLI------LAYTNAGEMEKAGEMF 161 (471)
Q Consensus 96 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~------~~~~~~~~~~~A~~~~ 161 (471)
...-....+. ....|...+.+.--.|+...|..+++... .++...+.... ....+.|.+++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7766555443 45678888888888999999998887772 24444443322 3456778888888877
Q ss_pred Hhcccc--C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCChHHH-HHHHHHHHHcCCC
Q 012108 162 KKMLVK--N-VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA-NLGSLETG-ARIHVYATDNGLA 236 (471)
Q Consensus 162 ~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a-~~~~~~~~~~~~~ 236 (471)
..-... | ...-..-...+.+.++.++|..++..++.. .||...|...+..+. +..+.-++ ..+|....+. .
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y 284 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--Y 284 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--C
Confidence 665332 2 222334556788899999999999999886 577777766555443 33333333 3566555443 2
Q ss_pred CchhHHHHHHHHHHhcCChHHH-HHHHhcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHh----CC----------
Q 012108 237 SNPHATTALIDMYAKCGSIEQS-LEVFYKSQV-KDVFCWNAMILGLALHGYGYAALKLLGEMND----SC---------- 300 (471)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---------- 300 (471)
|....-..+--......++.+. -+++....+ .-+.++..+.+.|-.....+-..++.-.+.. .|
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 2111111111111111222222 222222222 2233444444444332222211112111111 11
Q ss_pred CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhH
Q 012108 301 VKADDI--TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-LEHYGCMVDLLGRARLLDRAIELIEAMP--FEPTESI 375 (471)
Q Consensus 301 ~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 375 (471)
-+|+.. ++..++..+-..|+++.|..+++.+.. ..|+ +..|..-.+.+...|++++|...+++.. ..||..+
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 144543 344567778888999999999998876 3444 6666666788888999999999998872 3455554
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHcCCCC-----Cch-hHH--HHHHHHHhcCCHHHHHHHHHHh
Q 012108 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYL-----SDG-ELM--MFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~--~l~~~~~~~g~~~~A~~~~~~m 434 (471)
-.--..-..+..+.++|.+++....+.+... +.. +|. .=+.+|.++|++..|.+-|..+
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 4455666678888999998888887766320 011 122 2345788888888887655544
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=1.1e-07 Score=80.60 Aligned_cols=307 Identities=12% Similarity=0.086 Sum_probs=189.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhcCCCChhhHHH---HHHHHHhCCC
Q 012108 80 NSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMI---SGYARIGKIHSARYIFDKVPAKDVVSWNS---LILAYTNAGE 153 (471)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~ 153 (471)
-.+...+...|++..|+.-|......|+..|.++. ..|...|+-..|+.=+..+++..+..+.+ -...+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 34566666677777777777777666666555543 34666666666666666654322222222 2245666777
Q ss_pred HHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 012108 154 MEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233 (471)
Q Consensus 154 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (471)
++.|..-|+.+++.++. +|...+|.+-+....+ .......+..+...|+...|+.....+++.
T Consensus 122 le~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 77777777666443221 1111111111110000 001122334455677788888888887776
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhc---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---
Q 012108 234 GLASNPHATTALIDMYAKCGSIEQSLEVFYK---SQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT--- 307 (471)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--- 307 (471)
. +.+...+..-..+|...|++..|+.-++. +...+...+-.+-..+...|+.+.++...++..+. .||...
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~ 261 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP 261 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH
Confidence 4 66777777778888888888888766554 33456666666777777788888888877777764 555422
Q ss_pred -HHHH---------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 012108 308 -FIGL---------LSACSHAGLVQEGCELFSRMEKDFGVTRK-----LEHYGCMVDLLGRARLLDRAIELIEAM-PFEP 371 (471)
Q Consensus 308 -~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 371 (471)
|..+ +......++|.++++-.+...+. .|. ...+..+-.++...|++.+|++...+. .+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 1111 12234567778888777777761 232 334455666777788888888888776 5556
Q ss_pred C-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchh
Q 012108 372 T-ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410 (471)
Q Consensus 372 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 410 (471)
| +.++.--..+|.-...++.|+.-|+++.+.++. +...
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s-n~~~ 377 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES-NTRA 377 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc-cHHH
Confidence 5 778888888888888899999999988888877 4443
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=7e-08 Score=90.69 Aligned_cols=229 Identities=14% Similarity=0.065 Sum_probs=144.5
Q ss_pred ccHHHHHHH--HhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC-----------CCc-
Q 012108 11 YSFPLLLKA--AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE-----------KDI- 76 (471)
Q Consensus 11 ~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~- 76 (471)
.|-..+++. |...|+.+.|.+-...+. +..+|..+.+.+.+.++++-|.-.+-.|.. .+.
T Consensus 727 ~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 727 STRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred HHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 344444443 557788888887777665 446789999999999999988888777753 121
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHhCCCHH
Q 012108 77 IAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK-DVVSWNSLILAYTNAGEME 155 (471)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 155 (471)
..-..+.-.....|-+++|+.++++..+ |..+=+.|-..|.+++|.++-+.--.. =..+|......+-..+|.+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHH
Confidence 2223333344677888899888887654 444556677788888888876553211 1245666666677778888
Q ss_pred HHHHHHHhcccc-----------------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012108 156 KAGEMFKKMLVK-----------------------NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLS 212 (471)
Q Consensus 156 ~A~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 212 (471)
.|++.|++...+ |...|.-.....-..|+.+.|+.+|..... |-.+++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 888888776322 222333333334445666666666655432 444555
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012108 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265 (471)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (471)
..|-.|+.++|.++-++ ..|......|.+.|-..|++.+|..+|-+.
T Consensus 947 I~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56666777777666543 224444555777777777777777777543
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=1.8e-07 Score=87.06 Aligned_cols=282 Identities=15% Similarity=0.124 Sum_probs=132.6
Q ss_pred HHHHHHcCCCHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHH
Q 012108 82 MLDAFASCGQMDHAMKLIDLM--PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGE 159 (471)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 159 (471)
.|..|.+.|.+.+|.+....- ...|......+..++.+..-+++|-.+|+++..++. .+.+|-+-+-+-+|.+
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaie 695 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIE 695 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHH
Confidence 355556666655555433211 111444555555555555555555555555433322 1122222222333333
Q ss_pred HHHhccccChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 012108 160 MFKKMLVKNVIT-WNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN 238 (471)
Q Consensus 160 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 238 (471)
+-+-..+..++. -......+...|+++.|...|-+... ..-.+.+......|.+|..+++.+++.. .-
T Consensus 696 larfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~ 764 (1636)
T KOG3616|consen 696 LARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TA 764 (1636)
T ss_pred HHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cc
Confidence 322221111111 11112233344555555544433211 1122334445566666666666665543 22
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 318 (471)
..-|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|++++|.++-.+.. |.......|..-..-+-+.
T Consensus 765 s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 765 SGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEH 837 (1636)
T ss_pred cccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhh
Confidence 334555666666667777777666543 234455666667777777666655543 2233344454444555566
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHH
Q 012108 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (471)
|++.+|+++|-.+.. |+. -|.+|-+.|..+..+++..+..-..-..|...+..-+-..|+.+.|+..|
T Consensus 838 gkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 838 GKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred cchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 666666665544433 332 34556666666666655555421111223334444445555555555444
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.12 E-value=6e-09 Score=90.71 Aligned_cols=248 Identities=12% Similarity=0.047 Sum_probs=151.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 012108 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256 (471)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 256 (471)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888876555 222211122334455667777777766433 3333333 566666665655554445555
Q ss_pred HHHHHHhcCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 012108 257 QSLEVFYKSQ-VK----DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRM 331 (471)
Q Consensus 257 ~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (471)
.++.-+++.. .+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665554433 22 1222222233455678888888777642 34566667778888888888888888888
Q ss_pred HHhcCCCCChhHHHHHHHHHh----hcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 332 EKDFGVTRKLEHYGCMVDLLG----RARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.+ ...| .+...+..++. -.+++.+|..+|+++ ...+++.+.+.+..++...|++++|.++++++.+.+|.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 76 2233 22333444332 234688888888888 44567778888888888888888888888888888888
Q ss_pred CCchhHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCc
Q 012108 406 LSDGELMMFANLYASCGQW-EEANRWRNMMNDTGIV 440 (471)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~ 440 (471)
++.+...++.+....|+. +.+.+++.++.+..+.
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 888888888888888877 5677788887766554
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=5.4e-07 Score=83.98 Aligned_cols=352 Identities=13% Similarity=0.105 Sum_probs=204.4
Q ss_pred HHHHHhccCCHhHHHHHhcccC--CCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 012108 51 LLKMYGSLRCIDDAFKVFEKMP--EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARY 128 (471)
Q Consensus 51 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 128 (471)
-|..|.+.|...+|.+....-. -.|......+..++.+..-+++|-.+|+++..++ ..+.+|-+..-+.+|.+
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~d-----kale~fkkgdaf~kaie 695 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFD-----KALECFKKGDAFGKAIE 695 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHH-----HHHHHHHcccHHHHHHH
Confidence 3556666666655554433211 1344445555555555555666666666655331 12223333333444444
Q ss_pred HHhhcCCCChh---------------------------hHHHHHHHHHhCCCHHHHHHHHHhccccChH--HHHHHHHHH
Q 012108 129 IFDKVPAKDVV---------------------------SWNSLILAYTNAGEMEKAGEMFKKMLVKNVI--TWNTMVTGY 179 (471)
Q Consensus 129 ~~~~~~~~~~~---------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~ 179 (471)
+-+-..+..++ ..-..+.+......|.+|+.+++.+..+++. -|..+...|
T Consensus 696 larfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhy 775 (1636)
T KOG3616|consen 696 LARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHY 775 (1636)
T ss_pred HHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHh
Confidence 43333221111 1112234455566777777777777555433 466777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012108 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259 (471)
Q Consensus 180 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 259 (471)
...|+++.|.++|-+.- .++-.|..|.+.|+|..|.++-++. .|.......|.+-..-+-+.|++.+|.
T Consensus 776 an~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 776 ANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred ccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhh
Confidence 88888888888876531 2445677788888888888776554 333445666766677777888888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 012108 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339 (471)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 339 (471)
++|-.+..|+. .|+.|-+.|..++.+++..+-.... -..|-..+..-+-..|+...|+.-|-+...
T Consensus 845 qlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d------ 910 (1636)
T KOG3616|consen 845 QLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD------ 910 (1636)
T ss_pred heeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh------
Confidence 88887777763 4667888888888888777643221 224555666777778888888877766655
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC---------------CCCH--hH------HHHHHHHHhhcCCchHHHHHH
Q 012108 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPF---------------EPTE--SI------LGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------~p~~--~~------~~~l~~~~~~~g~~~~a~~~~ 396 (471)
|.+-+.+|...+-+++|.++-+.-+- ..+. .. +..-+.-.+..+.++-|..+-
T Consensus 911 ----~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdla 986 (1636)
T KOG3616|consen 911 ----FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLA 986 (1636)
T ss_pred ----HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHH
Confidence 55556666666777776666554320 0010 00 111112222334444444443
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 397 KMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
+-..+. . .+.+...++..+...|++++|-+-+-+..+.+.
T Consensus 987 ri~~k~-k--~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 987 RIAAKD-K--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHhhhc-c--CccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 333221 1 345566677778888999998777766665543
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=1.1e-06 Score=80.77 Aligned_cols=258 Identities=11% Similarity=-0.027 Sum_probs=128.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 012108 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA----NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253 (471)
Q Consensus 178 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (471)
.+...|++++|.+++++..+.. +.+...+.. ...+. ..+..+.+.+.+... ....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 4455666666666666665542 122222221 11111 223333343333331 1111222333444555666667
Q ss_pred ChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHhccCcHHHHHHH
Q 012108 254 SIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV-KADD--ITFIGLLSACSHAGLVQEGCEL 327 (471)
Q Consensus 254 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~ 327 (471)
++++|.+.+++... .+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777666665443 2445566666666777777777777766655321 1222 2344566666777777777777
Q ss_pred HHHhHHhcCCCCChhHH-H--HHHHHHhhcCCHHHHHHH---HHh---C-CCCCCHhHHHHHHHHHhhcCCchHHHHHHH
Q 012108 328 FSRMEKDFGVTRKLEHY-G--CMVDLLGRARLLDRAIEL---IEA---M-PFEPTESILGALLSACVIHQDLEIGDRVAK 397 (471)
Q Consensus 328 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 397 (471)
++++.......+..... + .++..+...|....+.+. ... . ..............++...|+.+.|..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 77765311111111111 1 222222333322222211 111 1 101111222245566777888888888888
Q ss_pred HHHHcCCC--------CCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 398 MVCAKSNY--------LSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 398 ~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
.+...... .........+.++.+.|++++|.+.+.......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77653211 023333455667778999999999988876543
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=1.6e-06 Score=90.21 Aligned_cols=353 Identities=9% Similarity=-0.027 Sum_probs=220.1
Q ss_pred HHcCCCHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCCCHHHHHH
Q 012108 86 FASCGQMDHAMKLIDLMPLKDV--TSFNIMISGYARIGKIHSARYIFDKVPA----KDVVSWNSLILAYTNAGEMEKAGE 159 (471)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~ 159 (471)
+...|++.+|..........+. .............|+++.+...++.+.. .++.........+...|++++|..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 4445555555554444432211 1122223345566788888787777621 233333445556678899999988
Q ss_pred HHHhccc----c----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHH
Q 012108 160 MFKKMLV----K----N----VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY----LTVTSVLSACANLGSLETG 223 (471)
Q Consensus 160 ~~~~~~~----~----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a 223 (471)
.+..... . + ......+...+...|++++|...+++..+.-...+. ...+.+...+...|+++.|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8876621 1 1 112223345567899999999999987763111121 2334555667789999999
Q ss_pred HHHHHHHHHcCC---CC--chhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C----ChhhHHHHHHHHHhcCChH
Q 012108 224 ARIHVYATDNGL---AS--NPHATTALIDMYAKCGSIEQSLEVFYKSQV-------K----DVFCWNAMILGLALHGYGY 287 (471)
Q Consensus 224 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~ 287 (471)
...+++.....- .+ .......+...+...|+++.|...+++... + ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999888764311 11 123456677788899999999988765332 1 1123445556677789999
Q ss_pred HHHHHHHHHHhC--CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHhhcCCHH
Q 012108 288 AALKLLGEMNDS--CVKAD--DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY-----GCMVDLLGRARLLD 358 (471)
Q Consensus 288 ~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~ 358 (471)
+|...+.+.... ...+. ...+..+.......|+.+.|...+..+............+ ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 999999887543 11122 2344445667788999999999988886521111111111 11224455689999
Q ss_pred HHHHHHHhCCCC--CCH----hHHHHHHHHHhhcCCchHHHHHHHHHHHcC----CCC-CchhHHHHHHHHHhcCCHHHH
Q 012108 359 RAIELIEAMPFE--PTE----SILGALLSACVIHQDLEIGDRVAKMVCAKS----NYL-SDGELMMFANLYASCGQWEEA 427 (471)
Q Consensus 359 ~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A 427 (471)
.|.+.+...... ... ..+..+..++...|++++|...++++.... ..+ ...+...++.++.+.|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998776311 111 113456677888999999999999887652 111 124566788899999999999
Q ss_pred HHHHHHhhhCC
Q 012108 428 NRWRNMMNDTG 438 (471)
Q Consensus 428 ~~~~~~m~~~~ 438 (471)
.+.+.+..+..
T Consensus 751 ~~~L~~Al~la 761 (903)
T PRK04841 751 QRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.1e-07 Score=81.81 Aligned_cols=389 Identities=11% Similarity=0.012 Sum_probs=205.0
Q ss_pred HHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CC-cccHHHHHHHHHcCCCHHH
Q 012108 18 KAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KD-IIAWNSMLDAFASCGQMDH 94 (471)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 94 (471)
++.+..|+++.|...|-+.+... +++...|+.-..+|+..|++++|.+=-.+-.+ |+ +..|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45678899999999999999886 44888999999999999999999876555443 43 4579999999999999999
Q ss_pred HHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHH---HHHHHhhcC-CC------ChhhHHHHHHHH----------HhC
Q 012108 95 AMKLIDLMPLK---DVTSFNIMISGYARIGKIHS---ARYIFDKVP-AK------DVVSWNSLILAY----------TNA 151 (471)
Q Consensus 95 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~-~~------~~~~~~~l~~~~----------~~~ 151 (471)
|+.-|.+-.+. +...++.+..++.......+ --.++.... .| ....|..++..+ ..-
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 99999988755 44556666666511100000 000111110 00 111222222221 111
Q ss_pred CCHHHHHHHHHhc----------------ccc----------------------ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 012108 152 GEMEKAGEMFKKM----------------LVK----------------------NVITWNTMVTGYLRSQLYIEVVDLFD 193 (471)
Q Consensus 152 ~~~~~A~~~~~~~----------------~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~ 193 (471)
..+..|.-.+... ..| -..-...+.+...+..++..|++.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1122222222111 000 00123345555666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH-------HHHHHHhcCChHHHHHHHhcCC
Q 012108 194 EMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTA-------LIDMYAKCGSIEQSLEVFYKSQ 266 (471)
Q Consensus 194 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~ 266 (471)
...+.. -+..-++....++...|.+...........+.|- ....-++. +..+|.+.++++.++..|.+..
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 665542 2223333444455566666555555555544441 11111221 2234444455555555555422
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 012108 267 VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD-ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345 (471)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (471)
.+... -....+....+++....+...-. .|.. .-...-...+.+.|++..|...|.++.+ ..+.|...|.
T Consensus 326 te~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYs 396 (539)
T KOG0548|consen 326 TEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYS 396 (539)
T ss_pred hhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHH
Confidence 21000 00111222233333333332221 2221 1111224445566777777777777666 3355666777
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 012108 346 CMVDLLGRARLLDRAIELIEAM-PFEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (471)
...-+|.+.|.+..|+.-.+.. ...|+ ...|.-=..++....+++.|.+.|++.++.+|. +......+.+++..
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHH
Confidence 7777777777777666655544 23333 233433344444556677777777777776666 55555555555544
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=4e-07 Score=77.24 Aligned_cols=312 Identities=11% Similarity=0.017 Sum_probs=201.1
Q ss_pred chhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHH---HHHHcCCCHHHHHHHHhcCCCCChhhHHH---HHHHH
Q 012108 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSML---DAFASCGQMDHAMKLIDLMPLKDVTSFNI---MISGY 117 (471)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~ 117 (471)
++.-.--+...+...|.+..|+.-|....+-|+..|.++. ..|...|+...|+.-|.......+..+.+ -...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 3444455667777889999999999999988888887764 46888899888888888776554333333 34468
Q ss_pred HhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012108 118 ARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197 (471)
Q Consensus 118 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 197 (471)
.+.|.++.|..=|+.++..++.-- ....++.+.--.++-. .....+..+.-.|+...|+.....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~-~~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNG-LVLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 899999999999999865433110 0011111111111111 112233445556777777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh------
Q 012108 198 GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF------ 271 (471)
Q Consensus 198 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 271 (471)
-. +.|...|..-..+|...|.+..|+.=++...+.. ..+...+..+...+...|+.+.++..+++..+-|+.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 42 3455566666667777777777766666665544 445555555666777777777777766665542221
Q ss_pred hHHHH---------HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 012108 272 CWNAM---------ILGLALHGYGYAALKLLGEMNDSCVKADDIT---FIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339 (471)
Q Consensus 272 ~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 339 (471)
.|..+ +......+++.++++..+...+......... +..+-.++...+++.+|++...++.. -.+.
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~ 339 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCch
Confidence 11111 2234556788888888888777533322333 33445566778999999999999987 3444
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 012108 340 KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT 372 (471)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 372 (471)
|+.++.--..+|.-...++.|+.-|+.. ...++
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 5888888888999899999999999887 33443
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=2.4e-07 Score=76.99 Aligned_cols=303 Identities=13% Similarity=0.112 Sum_probs=141.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHhcc--ccChHHHH-HHHHHHHhcC
Q 012108 110 FNIMISGYARIGKIHSARYIFDKVPAK---DVVSWNSLILAYTNAGEMEKAGEMFKKML--VKNVITWN-TMVTGYLRSQ 183 (471)
Q Consensus 110 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~-~l~~~~~~~~ 183 (471)
+.+++..+.+..++.+|++++..-.+. +....+.|..+|....++..|-+.++++. .|...-|. .-...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445555556666666666665554332 33344455555666666666666666652 22222221 1233444555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012108 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLS--ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEV 261 (471)
Q Consensus 184 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 261 (471)
.+.+|+++...|... |+...-..-+. .....+++..+..+.++.-.. .+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 556666655555432 22111111111 112344444444444433211 1233333333334455555555555
Q ss_pred HhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHhccCcHHHHHHHHHHhHH
Q 012108 262 FYKSQV----KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG----LLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 262 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
|+...+ .....|+..+ +..+.|+++.|++...+++++|++-.+..-.. .+.+ ...|+. ..+....
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~Sa-- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQSA-- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHHH--
Confidence 544333 1223333322 22234455555555555555444321110000 0000 000000 0000000
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCch
Q 012108 334 DFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP----FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409 (471)
Q Consensus 334 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 409 (471)
-...+|.-...+.+.|+++.|.+.+..|+ ...|+.|...+.-.- ..+++.+..+-+.-+++.+|- .+.
T Consensus 240 ------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~E 311 (459)
T KOG4340|consen 240 ------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPE 311 (459)
T ss_pred ------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChH
Confidence 01122222333456788888888888773 344666666554321 245566666666777777775 677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 410 ELMMFANLYASCGQWEEANRWRNM 433 (471)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~ 433 (471)
+|..++-.|++..-++-|-+++-+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888888888888777777766543
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.02 E-value=2.1e-06 Score=78.86 Aligned_cols=291 Identities=14% Similarity=0.033 Sum_probs=158.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhc---CCCChh---hHHHHHHHHHhCCCHHHHHHHHHhccc--c-ChHHHHHHHHHH
Q 012108 109 SFNIMISGYARIGKIHSARYIFDKV---PAKDVV---SWNSLILAYTNAGEMEKAGEMFKKMLV--K-NVITWNTMVTGY 179 (471)
Q Consensus 109 ~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 179 (471)
.+..+...+...|+.+.+.+.+... .+++.. ........+...|++++|.+.+++... | +...+.. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 3444445555555555554444443 111211 111223345667788888888777632 2 3333332 2122
Q ss_pred Hh----cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 012108 180 LR----SQLYIEVVDLFDEMKAGNVKPDY-LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254 (471)
Q Consensus 180 ~~----~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (471)
.. .+..+.+.+.+.. ..+..|+. .....+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22 3444444444443 11223333 233445566778888888888888888875 5566777888888888888
Q ss_pred hHHHHHHHhcCCCC-----Ch--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHhccCcHHH
Q 012108 255 IEQSLEVFYKSQVK-----DV--FCWNAMILGLALHGYGYAALKLLGEMNDSCV-KADDITF-I--GLLSACSHAGLVQE 323 (471)
Q Consensus 255 ~~~a~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~~~~ 323 (471)
+++|+..+++.... +. ..|..+...+...|++++|..++++...... .+..... . .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 88888888775541 11 2355677788888999999999988764322 1111111 1 22233333343322
Q ss_pred HHHH---HHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC---C------HhHHHHHHHHHhhcCCc
Q 012108 324 GCEL---FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP--FEP---T------ESILGALLSACVIHQDL 389 (471)
Q Consensus 324 a~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p---~------~~~~~~l~~~~~~~g~~ 389 (471)
+... ......................++...|+.++|..+++.+. ... . ........-++...|+.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 11111100001111222245566778888999988887761 111 1 11222222345688999
Q ss_pred hHHHHHHHHHHHcC
Q 012108 390 EIGDRVAKMVCAKS 403 (471)
Q Consensus 390 ~~a~~~~~~~~~~~ 403 (471)
++|.+.+.......
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877654
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=9.5e-06 Score=73.31 Aligned_cols=392 Identities=11% Similarity=0.119 Sum_probs=209.8
Q ss_pred CCchhHHHHHHHHHhccCCHhHHHHHhcccCC--C-CcccHHHHHHHHHcCCCHHHHHHHHhcCCCC--ChhhHHHHHHH
Q 012108 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--K-DIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNIMISG 116 (471)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~ 116 (471)
+-|..+|+.|++-+..+ .+++++..++++.. | .+..|..-|..-.+..+++...++|.+.... +...|..-+.-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 34666677776655544 66777777776654 2 4456666666666667777777766665533 44444433332
Q ss_pred HH-hcCCHHHHH----HHHhhc------CCCChhhHHHHHHH---------HHhCCCHHHHHHHHHhccc-c--Ch----
Q 012108 117 YA-RIGKIHSAR----YIFDKV------PAKDVVSWNSLILA---------YTNAGEMEKAGEMFKKMLV-K--NV---- 169 (471)
Q Consensus 117 ~~-~~g~~~~a~----~~~~~~------~~~~~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~-~--~~---- 169 (471)
-. ..|+...+. +.|+-. -..+...|+..+.. |....+++..+++|+++.. | |.
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 21 122222211 112111 11122334443332 4445567777778877732 2 11
Q ss_pred ---HHHHHHHHH-------HHhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHccCChH-
Q 012108 170 ---ITWNTMVTG-------YLRSQLYIEVVDLFDEMKA--GNVKPDYLT---------------VTSVLSACANLGSLE- 221 (471)
Q Consensus 170 ---~~~~~l~~~-------~~~~~~~~~a~~~~~~m~~--~g~~p~~~~---------------~~~l~~~~~~~~~~~- 221 (471)
..|..=|+. --+...+..|.++++++.. .|......+ |..+|.- .+.+-.+
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~t 254 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCccc
Confidence 112111111 1123346667777766643 233211111 2222221 1111111
Q ss_pred --------HHHHHHHHH-HHcCCCCchhHH-----HHHHHHHHhcCCh-------HHHHHHHhcCCC----CChhhHHHH
Q 012108 222 --------TGARIHVYA-TDNGLASNPHAT-----TALIDMYAKCGSI-------EQSLEVFYKSQV----KDVFCWNAM 276 (471)
Q Consensus 222 --------~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~~-------~~a~~~~~~~~~----~~~~~~~~l 276 (471)
...-++++. .-.+..|+.... ....+.+...|+. +++..+++.... .+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222322 222333332211 1112233344443 344455544332 123333333
Q ss_pred HHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHh
Q 012108 277 ILGLALH---GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR-KLEHYGCMVDLLG 352 (471)
Q Consensus 277 ~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 352 (471)
...--.. .+.+.....++++...-..--..+|..+++...+..-...|..+|.++.++ +..+ ++..+++++..|+
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh
Confidence 3221111 135566667777665422222356778888888888889999999999884 5555 6777888887665
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC--CCCCchhHHHHHHHHHhcCCHHHHH
Q 012108 353 RARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS--NYLSDGELMMFANLYASCGQWEEAN 428 (471)
Q Consensus 353 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 428 (471)
.++.+-|.++|+-- .+..++.-....+.-+...++-..+..+|++.+... ++-...+|..++..-..-|+.+.+.
T Consensus 414 -skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred -cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 57788889988754 233334444666777788888899999999998873 2224578889998888889999888
Q ss_pred HHHHHhhhC
Q 012108 429 RWRNMMNDT 437 (471)
Q Consensus 429 ~~~~~m~~~ 437 (471)
++-+++...
T Consensus 493 ~lekR~~~a 501 (656)
T KOG1914|consen 493 KLEKRRFTA 501 (656)
T ss_pred HHHHHHHHh
Confidence 887777553
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=4.6e-06 Score=80.62 Aligned_cols=372 Identities=13% Similarity=0.105 Sum_probs=220.1
Q ss_pred HHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHH
Q 012108 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHA 95 (471)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 95 (471)
|..-+-+++++.--...++..++.|.+ |..++|++...|...++-.+- ++.+ +..--+..+.-||..+++.-|
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLke----N~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLKE----NPYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hccc----CCcchhhHHhhhhcccCCceE
Confidence 333444555555566666777777744 778888888888766543321 1111 111112233334444444333
Q ss_pred HHHHhcCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHh-----------hc----C--CCChhhHHHHHHHHHh
Q 012108 96 MKLIDLMPLK--------DVTSFNIMISGYARIGKIHSARYIFD-----------KV----P--AKDVVSWNSLILAYTN 150 (471)
Q Consensus 96 ~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~-----------~~----~--~~~~~~~~~l~~~~~~ 150 (471)
.-.+++-.-. ....|-...+-+....+.+.-.+++. +. . ..|+...+.-+.++..
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 3323222211 11123333333333333333222221 11 1 1355666666777777
Q ss_pred CCCHHHHHHHHHhc-cccCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 012108 151 AGEMEKAGEMFKKM-LVKNV-----ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA 224 (471)
Q Consensus 151 ~~~~~~A~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 224 (471)
.+-..+-.++++++ ..+++ ..-|.|+-...+. +..++.+..+++-.-. .|+. ...+...+-+++|.
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~i------a~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APDI------AEIAIENQLYEEAF 1068 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chhH------HHHHhhhhHHHHHH
Confidence 77777888888777 33322 2233344333333 3455666666654432 2222 22344555667777
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 012108 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304 (471)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 304 (471)
.+|+.. ..+....+.|+. .-+.++.|.++-++..+ +..|..+..+-.+.|...+|++-|-+. -|
T Consensus 1069 ~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dD 1132 (1666)
T KOG0985|consen 1069 AIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DD 1132 (1666)
T ss_pred HHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CC
Confidence 777654 334444444443 34667777777666544 457888888888888888888776542 26
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 384 (471)
+..|..++..+.+.|.+++-..++..+++ ..-.|... +.|+-+|++.+++.+.++++ ..|+......+..-|.
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCF 1205 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHh
Confidence 67788889999999999988888888777 35555544 46788888888887766654 3577777778888888
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
..|.++.|.-++. +...|..|+..+...|.+..|.+.-++.
T Consensus 1206 ~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888877765 4567777777777777777776554444
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3.2e-08 Score=89.52 Aligned_cols=217 Identities=13% Similarity=0.059 Sum_probs=175.4
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHH
Q 012108 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAA 289 (471)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 289 (471)
-+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+ .|..+...|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3457888999999999998886 77888999999999999998888888887655 4667788888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHH
Q 012108 290 LKLLGEMNDSCVKADDITFIGLL-----------SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLD 358 (471)
Q Consensus 290 ~~~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (471)
.+.|+.-+... |. |..+. ..+.....+....++|-++....+..+|+..+..|.-.|--.|+++
T Consensus 373 l~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99998876542 11 00000 1222333455566777777665666688999999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 359 RAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 359 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
+|...|+.+ .++| |..+||-|...++...+.++|+..+.+++++.|. -+.+...|+-.|...|.+.+|.+.|-..+.
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999987 5666 6789999999999999999999999999999999 788999999999999999999998876654
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.4e-05 Score=77.45 Aligned_cols=365 Identities=16% Similarity=0.163 Sum_probs=207.9
Q ss_pred HHHHHHHHhccCC--chhHHHHHHHHHhccCCHhHHHHHhcccC-CCCcc-----cHHHHHHHHHcCCCHHHHHHHHhcC
Q 012108 31 MLHGQTIKTGFCG--HVYVQTALLKMYGSLRCIDDAFKVFEKMP-EKDII-----AWNSMLDAFASCGQMDHAMKLIDLM 102 (471)
Q Consensus 31 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~ 102 (471)
++.++..+.+++. |+..-+.-+.++...+-..+-+++++++. ++++. .-|.|+-...+. +..+..+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 3445555544432 44445556677777777777777777764 33332 234444444443 445556666555
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhc
Q 012108 103 PLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRS 182 (471)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (471)
..-|.. .+...+...+-+++|..+|++.. .+......|++ .-+++++|.++-+++.+| ..|..+..+-.+.
T Consensus 1047 dnyDa~---~ia~iai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1047 DNYDAP---DIAEIAIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQG 1117 (1666)
T ss_pred ccCCch---hHHHHHhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhc
Confidence 433322 34455566666777777776652 12222222221 234555555555554433 4566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 012108 183 QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262 (471)
Q Consensus 183 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 262 (471)
|...+|.+-|-+ ..|...|..+++.+.+.|.+++-.+++..+++..-+|. +-+.|+-+|.+.+++.+.++++
T Consensus 1118 ~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh
Confidence 666666655432 13445566666666666666666666666655543332 2344556666666665555444
Q ss_pred hcCCC-----------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 012108 263 YKSQV-----------------------KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319 (471)
Q Consensus 263 ~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 319 (471)
..-.. .++.-|..|...+...|++..|...-++.. +..||..+-.+|...+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKE 1263 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchh
Confidence 21000 134557777777888888877776555432 5568888888888776
Q ss_pred cHHHHHHHHHHhHHhcCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHhhcCCchHHHHH
Q 012108 320 LVQEGCELFSRMEKDFGVT--RKLEHYGCMVDLLGRARLLDRAIELIEAM-PFE-PTESILGALLSACVIHQDLEIGDRV 395 (471)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~ 395 (471)
.+.-|. + +|+. ....-...++..|...|-+++...+++.. |+. .....|+-|.-.|++- .+++..+.
T Consensus 1264 EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1264 EFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred hhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 654442 1 2332 34555677899999999999999999876 433 3455666666666554 45555555
Q ss_pred HHHHHHcCCCC-------CchhHHHHHHHHHhcCCHHHHH
Q 012108 396 AKMVCAKSNYL-------SDGELMMFANLYASCGQWEEAN 428 (471)
Q Consensus 396 ~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 428 (471)
++-....-.-| ....|..+.-.|.+-..|+.|.
T Consensus 1335 l~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 54443321110 2446666777777777777664
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=1.2e-07 Score=93.97 Aligned_cols=203 Identities=13% Similarity=0.080 Sum_probs=153.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 012108 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK--------DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDIT 307 (471)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 307 (471)
|.+...|-.+|......++.++|.++.++.... -...|.+++..-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556667888888888888888888888765541 2356777777777778778888888888764 222345
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHH
Q 012108 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP---TESILGALLSAC 383 (471)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 383 (471)
|..|...|.+.++.++|.++++.|.+.++ -....|..+++.+.+..+-++|.+++.++ ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77788888888888888888888888544 56677888888888888888888888776 2223 344444555556
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccC
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 443 (471)
.+.||.+++..+|+..+...|+ -...|+.+++.-.+.|+.+.++.+|+++...+..+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 6888888888888888888888 7888888888888888888888888888877776543
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=6.2e-06 Score=85.90 Aligned_cols=351 Identities=8% Similarity=-0.026 Sum_probs=222.4
Q ss_pred HHHhccCCHhHHHHHhcccCCCCcc--cHHHHHHHHHcCCCHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCCHHHH
Q 012108 53 KMYGSLRCIDDAFKVFEKMPEKDII--AWNSMLDAFASCGQMDHAMKLIDLMPLK----DVTSFNIMISGYARIGKIHSA 126 (471)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a 126 (471)
..+...|++.+|............. ........+...|+++.+..+++.+... ++.........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 3344455555555544444332111 1112233455678888888888777421 444445556667788999999
Q ss_pred HHHHhhcCC----C----C----hhhHHHHHHHHHhCCCHHHHHHHHHhccc--c--Ch----HHHHHHHHHHHhcCCHH
Q 012108 127 RYIFDKVPA----K----D----VVSWNSLILAYTNAGEMEKAGEMFKKMLV--K--NV----ITWNTMVTGYLRSQLYI 186 (471)
Q Consensus 127 ~~~~~~~~~----~----~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~ 186 (471)
...+..... . + ......+...+...|++++|...+++... + +. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 888876521 1 1 11222234556789999999999988632 1 21 24556667788899999
Q ss_pred HHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCC
Q 012108 187 EVVDLFDEMKAGNV---KPD--YLTVTSVLSACANLGSLETGARIHVYATDN----GLA--S-NPHATTALIDMYAKCGS 254 (471)
Q Consensus 187 ~a~~~~~~m~~~g~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~ 254 (471)
+|...+++...... .+. ..++..+...+...|+++.|...+++.... +.. + ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 99999988764311 111 234455666778899999999998886542 211 1 23345566677888899
Q ss_pred hHHHHHHHhcCCC------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHhccCc
Q 012108 255 IEQSLEVFYKSQV------K--DVFCWNAMILGLALHGYGYAALKLLGEMNDSC--VKADDI--TF--IGLLSACSHAGL 320 (471)
Q Consensus 255 ~~~a~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~~~ 320 (471)
+++|...+.+... + ....+..+...+...|++++|...+.+..... ...... .. ...+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 9999988876532 1 12344456667888999999999998875421 111111 11 111233455789
Q ss_pred HHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HhHHHHHHHHHhhcCC
Q 012108 321 VQEGCELFSRMEKDFGVTRKLE----HYGCMVDLLGRARLLDRAIELIEAM-------PFEPT-ESILGALLSACVIHQD 388 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~ 388 (471)
.+.|...+..... ....... .+..+..++...|++++|...+++. +..++ ..+...+..++...|+
T Consensus 669 ~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 669 KEAAANWLRQAPK--PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred HHHHHHHHHhcCC--CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 9999988777654 1111111 1345677788999999999988876 22222 3456667778889999
Q ss_pred chHHHHHHHHHHHcCCC
Q 012108 389 LEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 389 ~~~a~~~~~~~~~~~~~ 405 (471)
.++|...+.++.+....
T Consensus 747 ~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 747 KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999987654
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=7.8e-08 Score=87.07 Aligned_cols=250 Identities=11% Similarity=-0.008 Sum_probs=188.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 012108 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256 (471)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 256 (471)
.-+.+.|+..+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44678889999999999888764 4456788888888888888899999999999886 677888889999999999999
Q ss_pred HHHHHHhcCCCC-ChhhHHHHH---------HHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 012108 257 QSLEVFYKSQVK-DVFCWNAMI---------LGLALHGYGYAALKLLGEMN-DSCVKADDITFIGLLSACSHAGLVQEGC 325 (471)
Q Consensus 257 ~a~~~~~~~~~~-~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 325 (471)
.|.+.+++-... ....|.... ..+.....+....++|-++. ..+..+|+.....|.-.|.-.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 999888753210 000000000 12222223445555555554 4455578888888888889999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
..|+.+.. --+-|...||.|...++...+.++|+..|++. .++|. +.+...|.-+|...|.+++|.+.|-.++...
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999997 34457889999999999999999999999998 77886 5678888999999999999999998877653
Q ss_pred CC---------CCchhHHHHHHHHHhcCCHHHHHHH
Q 012108 404 NY---------LSDGELMMFANLYASCGQWEEANRW 430 (471)
Q Consensus 404 ~~---------~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (471)
+. ++..+|..|=.++.-.++.+-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 22 2345777777777777877755544
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=2e-07 Score=76.72 Aligned_cols=150 Identities=9% Similarity=-0.013 Sum_probs=109.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCH
Q 012108 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357 (471)
Q Consensus 278 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (471)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 456777777766444332221 11 012235666777777777776 4566788888888888889999
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHH-hhcCC--chHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 012108 358 DRAIELIEAM-PFEP-TESILGALLSAC-VIHQD--LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRN 432 (471)
Q Consensus 358 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (471)
++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|. ++..+..++..+.+.|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999888887 4445 566777777764 56676 48899999999999998 88899999999999999999999999
Q ss_pred HhhhCCCccc
Q 012108 433 MMNDTGIVKT 442 (471)
Q Consensus 433 ~m~~~~~~~~ 442 (471)
++.+..++.+
T Consensus 169 ~aL~l~~~~~ 178 (198)
T PRK10370 169 KVLDLNSPRV 178 (198)
T ss_pred HHHhhCCCCc
Confidence 9888766543
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.90 E-value=6e-06 Score=79.83 Aligned_cols=415 Identities=11% Similarity=0.020 Sum_probs=217.1
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCC-----cccHHHHHHHH
Q 012108 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKD-----IIAWNSMLDAF 86 (471)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~ 86 (471)
.|..|-..|....+...|.+.|+...+.. ..+...+......|++..+++.|..+.-...+.+ ...|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555566665556667777777666654 3355666677777777777777776633322211 12233344446
Q ss_pred HcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-hHH--HHHHHHHhCCCHHHHHHH
Q 012108 87 ASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV-SWN--SLILAYTNAGEMEKAGEM 160 (471)
Q Consensus 87 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~l~~~~~~~~~~~~A~~~ 160 (471)
.+.++...|+.-|+...+. |...|..+..+|...|++..|.++|.++...++. .|. -..-..+..|.+.+|.+.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6667777777777666544 4456667777888888888888888777443322 121 122334566777777777
Q ss_pred HHhcccc----------ChHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCHHHHHHHHHH----------
Q 012108 161 FKKMLVK----------NVITWNTMVTGYLRSQLYIEVVDLFDEMK-------AGNVKPDYLTVTSVLSA---------- 213 (471)
Q Consensus 161 ~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-------~~g~~p~~~~~~~l~~~---------- 213 (471)
+..++.. -..++-.+...+...|=...+...+++.+ ......+...|-.+-.+
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~ 732 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS 732 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc
Confidence 7665211 11122222222222222222222222211 11111111111111111
Q ss_pred -------------HHccCCh---H---HHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cC----ChHHHHHHHhcCC
Q 012108 214 -------------CANLGSL---E---TGARIHVYATDNGLASNPHATTALIDMYAK----CG----SIEQSLEVFYKSQ 266 (471)
Q Consensus 214 -------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~ 266 (471)
....+.. + -+.+.+-.-.+ ...++..|..|+..|.+ .+ +...|+..+.+..
T Consensus 733 ~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 733 IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 1111111 1 01111111111 11223333334433332 11 2234556665533
Q ss_pred C---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 012108 267 V---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343 (471)
Q Consensus 267 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 343 (471)
+ .+...|+.|.-. ...|.+.-+...|-+-.... +-...+|..+.-.+.+..+++.|.+.|..... -.+.+...
T Consensus 811 ~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~ 886 (1238)
T KOG1127|consen 811 SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQ 886 (1238)
T ss_pred HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHH
Confidence 3 455667666554 55566666666666655442 33455677777777888888888888888876 34445666
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHhhcCCch----------HHHHHHHHHHHcCCCC
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-------PFEPTESILGALLSACVIHQDLE----------IGDRVAKMVCAKSNYL 406 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~~~~~~~~ 406 (471)
|..........|+.-++..+|..- +--|+..-|.....-....|+.+ .|--.+++.....|+
T Consensus 887 WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~- 965 (1238)
T KOG1127|consen 887 WLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ- 965 (1238)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc-
Confidence 655555556677777777777652 22334333333333334444443 344455566666777
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 407 SDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
+...|...+....+.+.+.+|.+...+.
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888777776666554
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=1.9e-07 Score=80.13 Aligned_cols=184 Identities=7% Similarity=-0.058 Sum_probs=121.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----
Q 012108 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--K-DV---FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD---- 305 (471)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---- 305 (471)
+.....+..++..+...|++++|...|+++.. | +. .++..+..++...|++++|...++++.+. .|+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 34556677777788888888888888876554 2 22 35566777788888888888888888765 2321
Q ss_pred HHHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHH
Q 012108 306 ITFIGLLSACSHA--------GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILG 377 (471)
Q Consensus 306 ~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 377 (471)
.++..+..++... |+.+.|.+.++.+.+. .+.+...+..+..... ..... .....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence 1344444555443 6677788888877762 2223323322221111 00000 00112
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHcCCC-C-CchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 378 ALLSACVIHQDLEIGDRVAKMVCAKSNY-L-SDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
.+...+.+.|++++|...++++++..|. | .+..+..++.++.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566788999999999999999998775 1 35788999999999999999999999886544
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=2.8e-06 Score=82.06 Aligned_cols=389 Identities=13% Similarity=0.017 Sum_probs=211.9
Q ss_pred hhHHHHHHHHHHHhccCCc-hhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCCCHHHHHHHHhc
Q 012108 26 SCIGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCGQMDHAMKLIDL 101 (471)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 101 (471)
...|...|-+.++.. ++ ...|..|...|+...+...|.+.|+...+ .+...+....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444444432 33 24678888888877788888888887664 4667788888999999999999887433
Q ss_pred CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHH-H
Q 012108 102 MPLKD-----VTSFNIMISGYARIGKIHSARYIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVIT-W 172 (471)
Q Consensus 102 ~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 172 (471)
.-+.+ ...|....-.+...++..+|..-|+.... .|...|..+..+|.++|.+..|.++|.+...-++.. |
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 32221 11233344456677888888888888744 356678888899999999999999998873332222 2
Q ss_pred H--HHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-------HcCCCC
Q 012108 173 N--TMVTGYLRSQLYIEVVDLFDEMKAG------NVKPDYLTVTSVLSACANLGSLETGARIHVYAT-------DNGLAS 237 (471)
Q Consensus 173 ~--~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~ 237 (471)
. -.....+..|.+.+|+..+...... +..--..++..+...+.-.|=..++..+++..+ ......
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 1 2233456788888888888776542 111112222222222222332333333333322 222122
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCh---H---HHHHHHHHHHhCCCCCCHHHH
Q 012108 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKD---VFCWNAMILGLALHGYG---Y---AALKLLGEMNDSCVKADDITF 308 (471)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~p~~~~~ 308 (471)
+...|..+.+ |..+|-... |+ .....++..-+-..+.. + -+.+.+-.-.+ ...+..++
T Consensus 712 ~~~~Wi~asd----------ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~W 778 (1238)
T KOG1127|consen 712 DRLQWIVASD----------ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPW 778 (1238)
T ss_pred hHHHHHHHhH----------HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchH
Confidence 2222222222 222222222 22 11111111111111111 1 01111111111 11123344
Q ss_pred HHHHHHHhc-------c-CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHH
Q 012108 309 IGLLSACSH-------A-GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGA 378 (471)
Q Consensus 309 ~~l~~~~~~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 378 (471)
..++..|.+ . .+...|...+.+..+ -...+..+|+.|.-. ...|++.-|...|-+. ..+....+|..
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N 855 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN 855 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec
Confidence 444433332 1 223356666666665 233455566665544 5556777666666544 23335567777
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (471)
+...+.+..+++.|...|.+.....|. +...|......-...|+.-++..+|..
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 777777777888888888888777777 777776666666666766666666654
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=1.3e-07 Score=73.50 Aligned_cols=103 Identities=7% Similarity=-0.117 Sum_probs=49.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcC
Q 012108 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQ 387 (471)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 387 (471)
.....+...|++++|...|+.+.. -.+.+...|..+..++.+.|++++|...|++. ...| +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 344444455555555555555544 22334444445555555555555555555544 2222 3444444444455555
Q ss_pred CchHHHHHHHHHHHcCCCCCchhHHHHH
Q 012108 388 DLEIGDRVAKMVCAKSNYLSDGELMMFA 415 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (471)
++++|+..|+++++..|. ++..+....
T Consensus 107 ~~~eAi~~~~~Al~~~p~-~~~~~~~~~ 133 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYA-DASWSEIRQ 133 (144)
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 555555555555555554 444444333
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=0.00013 Score=66.30 Aligned_cols=414 Identities=14% Similarity=0.090 Sum_probs=253.7
Q ss_pred CCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CCcccHHHHHH
Q 012108 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDIIAWNSMLD 84 (471)
Q Consensus 7 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 84 (471)
+-|..+|..||+-+..+ ..+++.+.++++... ++.+...|...+..-.+..+++..+++|.+... -+...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45668999999998877 899999999999865 456778999999999999999999999999764 36666776665
Q ss_pred HHHc-CCCHHHHH----HHHhcCC------CCChhhHHHHHH---------HHHhcCCHHHHHHHHhhcCC-C-------
Q 012108 85 AFAS-CGQMDHAM----KLIDLMP------LKDVTSFNIMIS---------GYARIGKIHSARYIFDKVPA-K------- 136 (471)
Q Consensus 85 ~~~~-~g~~~~A~----~~~~~~~------~~~~~~~~~l~~---------~~~~~g~~~~a~~~~~~~~~-~------- 136 (471)
---+ .|+...+. ..|+-.. -.+...|+.-+. -+....+++...+++.++.. |
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4322 22222211 1111111 112223333332 24455577788888888843 2
Q ss_pred --ChhhHHHHHHH-------HHhCCCHHHHHHHHHhccc--------------c-------ChHHHHHHHHHHHhcCC--
Q 012108 137 --DVVSWNSLILA-------YTNAGEMEKAGEMFKKMLV--------------K-------NVITWNTMVTGYLRSQL-- 184 (471)
Q Consensus 137 --~~~~~~~l~~~-------~~~~~~~~~A~~~~~~~~~--------------~-------~~~~~~~l~~~~~~~~~-- 184 (471)
|-..|..=++. --+...+-.|.++++++.. + -...|-.+|..-..++-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 22223222221 1223456667777766510 0 01224334432211110
Q ss_pred ------HHHHHHHHHHH-HhCCCCCCHHH-HHHHH----HHHHccCC-------hHHHHHHHHHHHHcCCCCchhHHHHH
Q 012108 185 ------YIEVVDLFDEM-KAGNVKPDYLT-VTSVL----SACANLGS-------LETGARIHVYATDNGLASNPHATTAL 245 (471)
Q Consensus 185 ------~~~a~~~~~~m-~~~g~~p~~~~-~~~l~----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 245 (471)
.....-.+++. .-.+..|+..- |...+ +.+...|+ .+++..+++...+.-...+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223322 22233443321 11111 12222333 34566666666554334445555554
Q ss_pred HHHHHhcC---ChHHHHHHHhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Q 012108 246 IDMYAKCG---SIEQSLEVFYKSQV----KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA-DDITFIGLLSACSH 317 (471)
Q Consensus 246 ~~~~~~~~---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 317 (471)
.+.--..- ..+...+.+++... .-..+|..++..-.+..-...|..+|.+..+.+..+ +...+..++.-+|
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 43322221 24445555555443 234678888999899999999999999999988777 6667777887766
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHhhcCCchHH
Q 012108 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPT--ESILGALLSACVIHQDLEIG 392 (471)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a 392 (471)
.++..-|..+|+.-.+ .+..++..-...++.+...++-..|..+|++. .+.|+ ..+|..++.--..-|+...+
T Consensus 414 skD~~~AfrIFeLGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred cCChhHHHHHHHHHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 5788999999998887 44556666778888889999999999999988 23443 47999999999999999999
Q ss_pred HHHHHHHHHcCC---CCCchhHHHHHHHHHhcCCHH
Q 012108 393 DRVAKMVCAKSN---YLSDGELMMFANLYASCGQWE 425 (471)
Q Consensus 393 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 425 (471)
.++-++....-| .+....-..+++-|.-.+.+.
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 999888876655 222334445566666555543
No 112
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=7.3e-06 Score=72.55 Aligned_cols=229 Identities=12% Similarity=-0.027 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL-TVTSVLSACANLG-SLETGARIHVYATDNGLASNPHATTALIDM 248 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (471)
++..+-..+...++.++|+.++.++++. .|+.. .|+....++...| ++++++..++.+.+.. +.+..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444444555556666666666666653 33332 3333333444444 3556666666665554 3344444444333
Q ss_pred HHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 012108 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328 (471)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (471)
+.+.|+. ..++++..++++.+.. +-+...|.....++...|+++++++.+
T Consensus 116 l~~l~~~-----------------------------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 116 AEKLGPD-----------------------------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHcCch-----------------------------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333331 0133444444444332 113344444444444445555555555
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHhhc---CCH----HHHHHHHHhC-CCCC-CHhHHHHHHHHHhhc----CCchHHHHH
Q 012108 329 SRMEKDFGVTRKLEHYGCMVDLLGRA---RLL----DRAIELIEAM-PFEP-TESILGALLSACVIH----QDLEIGDRV 395 (471)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~ 395 (471)
.++.+ ..+.+...|+.....+.+. |.. +++.++..++ ...| +...|+.+...+... +...+|.+.
T Consensus 166 ~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 55544 2223333343333333222 111 2333333222 2233 344555555555442 334556666
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhcC------------------CHHHHHHHHHHhh
Q 012108 396 AKMVCAKSNYLSDGELMMFANLYASCG------------------QWEEANRWRNMMN 435 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 435 (471)
+.+....+|. ++..+..|++.|.... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 6666666666 6667777777776532 3466888888774
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.77 E-value=2e-06 Score=70.64 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh
Q 012108 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353 (471)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (471)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...++++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 34445555556655555555554332 122333444455666666666666666666665 555666666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 012108 354 ARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWR 431 (471)
Q Consensus 354 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (471)
.|+++.|..-|.+. .+.| ++...+.+...+.-.|+++.|..++.......+. |..+-..|..+....|++++|.++.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666555 3333 4455566666666666666666666666666665 6666666666666666666666554
Q ss_pred H
Q 012108 432 N 432 (471)
Q Consensus 432 ~ 432 (471)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=8.2e-09 Score=57.13 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=21.8
Q ss_pred cCCCCCcccHHHHHHHHhhccchhHHHHHHHHH
Q 012108 4 LGVHADNYSFPLLLKAAGILSSSCIGLMLHGQT 36 (471)
Q Consensus 4 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 36 (471)
+|+.||..||++||.++++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 366666666666666666666666666666665
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=5.5e-06 Score=68.07 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=55.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh----hcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCC
Q 012108 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG----RARLLDRAIELIEAM--PFEPTESILGALLSACVIHQD 388 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 388 (471)
+.+..+++-|.+.+++|.+ -.+..+.+.|..++. ..+...+|.-+|+++ +..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 3344555555555555554 122333333333332 224455555555555 245555555555555555666
Q ss_pred chHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 012108 389 LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426 (471)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 426 (471)
+++|+.+++.++...+. ++.+...++-+-...|...+
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 66666666666665555 55555555555555555433
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=2.5e-06 Score=79.74 Aligned_cols=210 Identities=12% Similarity=-0.035 Sum_probs=133.7
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHH
Q 012108 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAA 289 (471)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 289 (471)
..+...|-...|..+++++. .+...+..|+..|+..+|..+..+-.+ |++..|..+........-+++|
T Consensus 406 ell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHH
Confidence 34444444555555544332 233345555555555555554433222 3445555555554444445555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 012108 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P 368 (471)
Q Consensus 290 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 368 (471)
.++.+..... .-..+.......++++++.+.|+.-.+ -.+-...+|-.+.-+..+.++++.|.+.|... .
T Consensus 477 wElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 477 WELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 5555443221 111111112235666666666666555 23335667777777788889999999988876 5
Q ss_pred CCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 369 FEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 369 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
..|| ...|+++-.+|.+.++-.+|...++++.+.+.. +...|........+.|.+++|++.+.++.+....
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 5665 568999999999999999999999999999876 7888888888889999999999999888764433
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.72 E-value=1e-06 Score=68.57 Aligned_cols=112 Identities=7% Similarity=-0.084 Sum_probs=87.1
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 326 ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
.++++..+ ..|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45566555 2333 3555677788888999998888887 3444 66788888888888899999999999999888
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccC
Q 012108 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443 (471)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 443 (471)
|. ++..+..++.++...|++++|+..|++..+..+..+.
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 88 8888888999888999999999998888877665443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=8.9e-06 Score=76.18 Aligned_cols=210 Identities=11% Similarity=0.050 Sum_probs=166.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 012108 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS 219 (471)
Q Consensus 140 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 219 (471)
.-..+...+...|-...|..+|++ ...|..++.+|...|+..+|..+..+-.++ +||...|..+.+......-
T Consensus 400 ~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 345667788899999999999987 466788888999999999999998887773 7888888888887776666
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 012108 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEM 296 (471)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (471)
+++|.++.+..-. .....+.....+.++++++.+.|+.-.. -...+|-.+..+..+.+++..|.+.|...
T Consensus 473 yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 7777777665432 2333344444557889999999886444 24568888888888999999999999988
Q ss_pred HhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 297 NDSCVKAD-DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 297 ~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
... .|| ...|+.+-.+|.+.++-.+|...+.++.+ ++ ..+...|...+....+.|.+++|.+.++++
T Consensus 546 vtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 546 VTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 864 555 46799999999999999999999999998 55 555667888888889999999999999887
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=2.4e-06 Score=83.36 Aligned_cols=179 Identities=9% Similarity=-0.036 Sum_probs=126.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 012108 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD-ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM 347 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 347 (471)
+...+..|.....+.|.+++|..+++...+. .|+. .....+...+.+.+++++|...+++... .-+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 5777888888888888888888888888875 5554 4566677888888888888888888887 555567777788
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 012108 348 VDLLGRARLLDRAIELIEAMP-FEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425 (471)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 425 (471)
..++.+.|++++|..+|+++. -.| +..++..+..++...|+.++|...|+++.+.... ....|+.++ ++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~------~~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD-GARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc-chHHHHHHH------HHHH
Confidence 888888888888888888872 233 4678888888888888888888888888877554 334443332 2334
Q ss_pred HHHHHHHHhhhCCCcccCcceEEEEcCeEeEEe
Q 012108 426 EANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458 (471)
Q Consensus 426 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
.-..+++++.-.+......+.-+.+...+..|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 445566666555444444455555544444333
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.2e-05 Score=63.75 Aligned_cols=249 Identities=14% Similarity=0.043 Sum_probs=161.9
Q ss_pred HHHHhCCCHHHHHHHHHhc-cc-cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH-
Q 012108 146 LAYTNAGEMEKAGEMFKKM-LV-KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET- 222 (471)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~- 222 (471)
+-+.-.|++..++..-... .. .+...-..+.++|...|++.....- +.... .|....+..+.......++.+.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 3344556666666655544 22 3444444566777777776544332 22221 3333333333333333444333
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 012108 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302 (471)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 302 (471)
..++.+.+.......+......-...|+..|++++|++..+... +..+...=...+.+..+.+-|.+.+++|.+-
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 33455555555444444444555567889999999999988733 3333333345566778899999999999873
Q ss_pred CCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHH
Q 012108 303 ADDITFIGLLSACSH----AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESIL 376 (471)
Q Consensus 303 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 376 (471)
-+..|.+.|..++.+ .+.+..|.-+|+++.+ ..+|++.+.+-..-++...|++++|..++++. +...++.++
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 356777777777653 4678899999999987 68899999999999999999999999999988 445577787
Q ss_pred HHHHHHHhhcCCchH-HHHHHHHHHHcCCC
Q 012108 377 GALLSACVIHQDLEI-GDRVAKMVCAKSNY 405 (471)
Q Consensus 377 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 405 (471)
..++..-...|...+ -.+.+.+.....|.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 777776666665544 45667777776666
No 121
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=0.00011 Score=66.78 Aligned_cols=361 Identities=13% Similarity=0.023 Sum_probs=227.9
Q ss_pred CCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCc-hhHHHHHHHHHhccCCHhHHHHHhcccCC--C-CcccHHHH
Q 012108 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGH-VYVQTALLKMYGSLRCIDDAFKVFEKMPE--K-DIIAWNSM 82 (471)
Q Consensus 7 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 82 (471)
++|.+.|+.-..+++..|++++|++=-.+-++.. |+ ...|+.....+.-.|++++|+..|.+-.+ | +...++.+
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl 110 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGL 110 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhH
Confidence 4466788888899999999999988777766654 43 35788888888889999999999998775 3 33456666
Q ss_pred HHHHHcCCCHHHHHHHHh------cCC-CC------ChhhHHHHHHHHHhc----------CCHHHHHHHHhhc------
Q 012108 83 LDAFASCGQMDHAMKLID------LMP-LK------DVTSFNIMISGYARI----------GKIHSARYIFDKV------ 133 (471)
Q Consensus 83 i~~~~~~g~~~~A~~~~~------~~~-~~------~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~------ 133 (471)
..++.... ++...|. .+. .+ ....|..++..+-+. .++..+.-.+...
T Consensus 111 ~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~ 187 (539)
T KOG0548|consen 111 AQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFY 187 (539)
T ss_pred HHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccc
Confidence 66651110 1111111 000 00 112333333332221 1122222221111
Q ss_pred ----------CCC------------C----------hhhHHHHHHHHHhCCCHHHHHHHHHhccc--cChHHHHHHHHHH
Q 012108 134 ----------PAK------------D----------VVSWNSLILAYTNAGEMEKAGEMFKKMLV--KNVITWNTMVTGY 179 (471)
Q Consensus 134 ----------~~~------------~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~ 179 (471)
.+| | ..-...+.+...+..+++.|.+-+..... .++.-++....+|
T Consensus 188 ~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 188 ASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVY 267 (539)
T ss_pred ccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHH
Confidence 001 0 01234567777888889999998888733 4555577788889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012108 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTS-------VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252 (471)
Q Consensus 180 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (471)
...|.+.++........+.|.. ...-|+. +..++.+.++++.+...|++.......|+. ..+.
T Consensus 268 ~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~l 337 (539)
T KOG0548|consen 268 LERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKL 337 (539)
T ss_pred HhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHH
Confidence 9999998888887777666532 2223333 333556677888899999887655433322 2233
Q ss_pred CChHHHHHHHhcCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 012108 253 GSIEQSLEVFYKSQV--KDV-FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFS 329 (471)
Q Consensus 253 ~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 329 (471)
...+++.+..+...- |.. .....-...+.+.|++..|+..|.+++... +-|...|..-.-+|.+.|.+..|+.=.+
T Consensus 338 k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 338 KEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344555544433222 221 112223667889999999999999999885 5577889999999999999999999888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhh
Q 012108 330 RMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESILGALLSACVI 385 (471)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 385 (471)
...+ -.++....|..=..++....++++|.+.|++. ...|+..-+..-+.-|..
T Consensus 417 ~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 417 KCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 8877 23444666666666677778899999999887 555665544444444443
No 122
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=4.3e-05 Score=67.73 Aligned_cols=208 Identities=13% Similarity=0.057 Sum_probs=126.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhccccC---hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012108 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKN---VITWNTMVTGYLRSQ-LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215 (471)
Q Consensus 140 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 215 (471)
++..+-.++...+..++|+.+..+++..+ ..+|+.-..++...| ++++++..++++.+.+ +-+...|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 44455566777889999999999995543 345666666666777 6899999999998864 334455665555555
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhc---CCh-
Q 012108 216 NLGSL--ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALH---GYG- 286 (471)
Q Consensus 216 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~---~~~- 286 (471)
+.|+. +.+..+++.+.+.. +-+..+|+....++...|+++++++.++++.+ .|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 56653 56778888887776 66777788777777777888888877777654 3556666665554443 222
Q ss_pred ---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 012108 287 ---YAALKLLGEMNDSCVKADDITFIGLLSACSHA----GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352 (471)
Q Consensus 287 ---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 352 (471)
++.+....+++... +-+...|+.+...+... ++..+|...+.++.. ..+.+......|++.|+
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLC 266 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHH
Confidence 24444444444431 22334454444444441 233445555555443 12233444555555554
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=3.3e-06 Score=72.49 Aligned_cols=181 Identities=12% Similarity=0.020 Sum_probs=124.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Chh---h
Q 012108 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP---HATTALIDMYAKCGSIEQSLEVFYKSQV--K-DVF---C 272 (471)
Q Consensus 202 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~---~ 272 (471)
.....+..+...+...|+++.|...++.+.+.. +.++ ..+..+..++...|++++|+..++++.+ | +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567778888999999999999999998764 3332 4667789999999999999999998765 2 222 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 012108 273 WNAMILGLALH--------GYGYAALKLLGEMNDSCVKADDI-TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343 (471)
Q Consensus 273 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 343 (471)
+..+..++... |++++|.+.++.+... .|+.. ....+... .. . ...... .
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~~---------~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLAG---------K 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHHH---------H
Confidence 55555666554 7889999999999876 44432 22222111 00 0 000000 1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CC---CC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-PF---EP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
...+...|.+.|++++|...+++. .. .| ....+..+..++...|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 124566788889999998888877 22 22 346778888889999999999998888776554
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=4.6e-08 Score=54.12 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=26.3
Q ss_pred ccCCchhHHHHHHHHHhccCCHhHHHHHhcccC
Q 012108 40 GFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72 (471)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 72 (471)
|++||..+|+.+|++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887773
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=2.2e-05 Score=78.77 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=167.7
Q ss_pred CCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcC-CC---CchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--ChhhH
Q 012108 201 KPDY-LTVTSVLSACANLGSLETGARIHVYATDNG-LA---SNPHATTALIDMYAKCGSIEQSLEVFYKSQVK--DVFCW 273 (471)
Q Consensus 201 ~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 273 (471)
.|++ ..|-..+......++.++|.++.++++..- +. --...|.++++....-|.-+...++|+++.+- ....|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 3444 456667777788889999999998887541 11 12356777777777778788888899888773 34678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHH
Q 012108 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR--KLEHYGCMVDLL 351 (471)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 351 (471)
..|...|.+.+++++|-++++.|.+. ..-....|...+..+.++.+-+.|..++.++.+ -++. ......-.++.-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999876 344667889999999999999999999999988 2333 355556666777
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCC-ch-hHHHHHHHHHhcCCHHH
Q 012108 352 GRARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS-DG-ELMMFANLYASCGQWEE 426 (471)
Q Consensus 352 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~ 426 (471)
.+.|+.+++..+|+.. ..+--...|+.++..-.++|+.+.++.+|++++.++..|- .. .|...+..-...|+-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8899999999999987 3333567899999999999999999999999999876532 22 33334443334466443
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=2.8e-05 Score=77.00 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 012108 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVF 262 (471)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 262 (471)
.+..+..+|-+.|+.+++..+|+++++.. +.++.+.|.+...|... ++++|++++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 34444444455555555555555555544 44445555555555544 555555444
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=8.5e-06 Score=67.12 Aligned_cols=125 Identities=12% Similarity=0.035 Sum_probs=94.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH-hhcCC--HHH
Q 012108 283 HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL-GRARL--LDR 359 (471)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 359 (471)
.++.+++...++.....+ +.+...|..+...|...|+++.|...|+++.+ -.+.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455677777777766653 55677888888888888999999999988887 3445677777777764 66676 488
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhH
Q 012108 360 AIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411 (471)
Q Consensus 360 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (471)
|.+++++. ...| +...+..+...+...|++++|+..|+++++..|. +..-+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~-~~~r~ 181 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP-RVNRT 181 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHH
Confidence 88888887 3444 5677888888888999999999999999888877 44443
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=3.2e-05 Score=63.72 Aligned_cols=119 Identities=13% Similarity=-0.003 Sum_probs=53.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc
Q 012108 275 AMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354 (471)
Q Consensus 275 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (471)
..+....+.|++..|...+.+.... -++|...++.+.-+|.+.|+++.|..-|.+..+ -.+-++...+.+.-.|.-.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHc
Confidence 3444444444444444444444432 233444444444444455555555444444444 1222333344444444444
Q ss_pred CCHHHHHHHHHhCCC-CC-CHhHHHHHHHHHhhcCCchHHHHHH
Q 012108 355 RLLDRAIELIEAMPF-EP-TESILGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 355 g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (471)
|+++.|..++..... .+ |..+-..+..+....|++++|+.+.
T Consensus 182 gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555544444411 11 3344444444444455555544443
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=1.1e-06 Score=67.96 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (471)
...+...+...|++++|.+.++.+ .. +.+...+..+...+...|++++|...+++..+.+|. ++..+..++.+|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 333444444445555555544444 11 223344444445555555555555555555555554 455555555555555
Q ss_pred CCHHHHHHHHHHhhhCC
Q 012108 422 GQWEEANRWRNMMNDTG 438 (471)
Q Consensus 422 g~~~~A~~~~~~m~~~~ 438 (471)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 99 GEPESALKALDLAIEIC 115 (135)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 55555555555554443
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=1.3e-05 Score=71.85 Aligned_cols=117 Identities=18% Similarity=0.088 Sum_probs=76.8
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHhhcCCchHH
Q 012108 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT-ESILGALLSACVIHQDLEIG 392 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 392 (471)
+...|+++.|+..++.+.+ ..+.|+..+....+.+...++..+|.+.++++ ...|+ ......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3455677777777777665 45556666666667777777777777777766 34454 44556666677777777777
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
+++++......|. |+..|..|+.+|...|+..+|.....+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 7777777777777 7777777777776666665555544443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=3.9e-05 Score=68.86 Aligned_cols=136 Identities=19% Similarity=0.153 Sum_probs=100.3
Q ss_pred HHHhCCCHHHHHHHHHhcc---ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHH
Q 012108 147 AYTNAGEMEKAGEMFKKML---VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD-YLTVTSVLSACANLGSLET 222 (471)
Q Consensus 147 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~ 222 (471)
.+...|++++|+..++.+. +.|+..+......+...++.++|.+.++++... .|+ ......+..++.+.|++++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 4556677777777777772 236666666777788888888888888888775 455 3444556677888888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012108 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299 (471)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (471)
|..+++...... +.++..|..|.++|...|+..++..-. ...+...|++++|+..+....+.
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 888888877765 777888888888888888877766543 45677788888888888877765
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=2e-05 Score=77.04 Aligned_cols=143 Identities=12% Similarity=0.032 Sum_probs=118.0
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012108 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--K-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311 (471)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 311 (471)
.+.++..+..|..+..+.|.+++|..+++...+ | +......++..+.+.+++++|+..+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 466788999999999999999999999998765 3 56678888999999999999999999999863 3345566777
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHH
Q 012108 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGALL 380 (471)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 380 (471)
..++.+.|++++|..+|+++.. ..+.+...+..+...+...|+.++|...|++. ...|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 7888999999999999999997 44456788889999999999999999999988 3445556665554
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=0.0001 Score=73.10 Aligned_cols=59 Identities=8% Similarity=0.115 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT 231 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (471)
++-.+..+|-+.|+.++|..+|+++++.. +-|....+.+...++.. ++++|.+++.++.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44445555555555555555555555543 33444445555555544 5555555554443
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=6.5e-06 Score=74.35 Aligned_cols=124 Identities=16% Similarity=0.070 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSAC 383 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 383 (471)
.....++..+...++++.|.++|+++.+. .|+ ....+++.+...++-.+|.+++++. . .+.+...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33445666666778888888888888772 143 4445777777777888888888776 2 233566666667778
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
.+.++++.|+.+.+++.+..|. +-.+|..|+.+|.+.|++++|+-.++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999999999999999 89999999999999999999999888774
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=3.9e-05 Score=62.73 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=127.0
Q ss_pred CChHHHHHHHHHHHH---cC-CCCchhH-HHHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHHHHHHhcCChHHH
Q 012108 218 GSLETGARIHVYATD---NG-LASNPHA-TTALIDMYAKCGSIEQSLEVFYKSQV--KDV-FCWNAMILGLALHGYGYAA 289 (471)
Q Consensus 218 ~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a 289 (471)
.+.++..+++..+.. .| ..++..+ +..++-+....|+.+.|..+++.+.. |+. ..-..-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 455566666655542 23 3455443 55566667778888888888877554 222 1111112234457888999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 012108 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P 368 (471)
Q Consensus 290 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 368 (471)
+++++.+.+.+ +.|..++.-=+...-..|+--+|++-+....+ .+..|...|..+...|...|++++|.-.++++ -
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999888774 44556666655566667777788888888887 67788889999999999999999999999888 4
Q ss_pred CCCCH-hHHHHHHHHHhhcC---CchHHHHHHHHHHHcCCCCCchhHH
Q 012108 369 FEPTE-SILGALLSACVIHQ---DLEIGDRVAKMVCAKSNYLSDGELM 412 (471)
Q Consensus 369 ~~p~~-~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (471)
++|.. ..+..+...+...| +.+.|.+.+.+.++..|. +...+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~ 229 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALF 229 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHH
Confidence 45644 44455555544333 566788888888888775 443333
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.0023 Score=62.03 Aligned_cols=88 Identities=6% Similarity=0.001 Sum_probs=52.5
Q ss_pred HHHHHHHhccCcHHH---HHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHhHHHHHHHH
Q 012108 309 IGLLSACSHAGLVQE---GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP---FEPTESILGALLSA 382 (471)
Q Consensus 309 ~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~ 382 (471)
+.++..+.+.++... |+-+++.... .-+.|..+-..+|..|.-.|-+..|.++|+.+. ++-|..-|. +...
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 456677777777664 4444444444 333455666778899999999999999999883 333332221 2233
Q ss_pred HhhcCCchHHHHHHHHH
Q 012108 383 CVIHQDLEIGDRVAKMV 399 (471)
Q Consensus 383 ~~~~g~~~~a~~~~~~~ 399 (471)
+...|++..+...+...
T Consensus 517 ~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEH 533 (932)
T ss_pred HHhcccchhHHHHHHHH
Confidence 34445555544444433
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00028 Score=57.95 Aligned_cols=186 Identities=15% Similarity=0.101 Sum_probs=141.7
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 012108 182 SQLYIEVVDLFDEMKA---GN-VKPDYLT-VTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIE 256 (471)
Q Consensus 182 ~~~~~~a~~~~~~m~~---~g-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 256 (471)
..++++..+++.+++. .| ..++..+ |..++-+....|+.+.|...++.+.+.- |.+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4567777777777653 24 4566554 4456667778889999999999987764 555555555555667789999
Q ss_pred HHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 257 QSLEVFYKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 257 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
+|+++++.+... |.+++-.-+...-..|+..+|++-+.+..+. +..|...|..+...|...|+++.|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999988764 4466666677777789888999999888876 677999999999999999999999999999986
Q ss_pred hcCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC
Q 012108 334 DFGVTRKLEHYGCMVDLLGRAR---LLDRAIELIEAM-PFEP 371 (471)
Q Consensus 334 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p 371 (471)
..|.++..+..+.+.+-..| +.+-|.++|.+. .+.|
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 45567778888888765544 566788888776 5555
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.38 E-value=0.0029 Score=61.44 Aligned_cols=403 Identities=15% Similarity=0.095 Sum_probs=225.2
Q ss_pred hccchhHHHHHHHHHHHhccCCchhHHHHHHHHH--hccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCCCHHHHH
Q 012108 22 ILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY--GSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCGQMDHAM 96 (471)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 96 (471)
..+++..|.+..+.+.+.. |+. .|...+.++ .+.|+.++|..+++.... .|..+...+-..|.+.|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 5678899999999988774 333 234444444 578999999999887653 47778889999999999999999
Q ss_pred HHHhcCCCC--ChhhHHHHHHHHHhcCCHH----HHHHHHhhcCCCChhhHHHHHHHHHhCC----------CHHHHHHH
Q 012108 97 KLIDLMPLK--DVTSFNIMISGYARIGKIH----SARYIFDKVPAKDVVSWNSLILAYTNAG----------EMEKAGEM 160 (471)
Q Consensus 97 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~A~~~ 160 (471)
.+++..... +......+..+|++.+.+. .|.+++...++ +++.+=++++...... -..-|.+.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999999866 4445556666777777654 45666665444 3433334444443321 13446667
Q ss_pred HHhccccC-h----HHHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 012108 161 FKKMLVKN-V----ITWNTMVTGYLRSQLYIEVVDLFDE-MKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNG 234 (471)
Q Consensus 161 ~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (471)
++.+.+.+ . .-...-...+...|.+++|+.++.. ..+.-...+...-+.-+..+...+++++..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 77764443 1 1111222344567889999999844 3333223333444455667778899999999999988887
Q ss_pred CCCchhHHHHHHHHHH----------------hcCChHHHHHHHhcCCCC-ChhhHHHHHHHHH---hcCChHHHHHHHH
Q 012108 235 LASNPHATTALIDMYA----------------KCGSIEQSLEVFYKSQVK-DVFCWNAMILGLA---LHGYGYAALKLLG 294 (471)
Q Consensus 235 ~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~~~~ 294 (471)
..| |...++.+. ..+..+...+..++.... ....|-+-+.+.. .-|+.+++...|-
T Consensus 257 -~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 257 -NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred -Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 333 333333221 112233333333332221 2223333333333 4577777665543
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-------HHHHHHHHHhhcCCH-----HHHHH
Q 012108 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE-------HYGCMVDLLGRARLL-----DRAIE 362 (471)
Q Consensus 295 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~-----~~A~~ 362 (471)
+-. |-.| .|..=+..|...=+.+.-..++...... .++.. -+...+....-.|.+ +....
T Consensus 333 ~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 333 KKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 321 2122 1222222222222222223333332220 11100 011111111111211 11111
Q ss_pred HHHhC------C------CCCC---------HhHHHHHHHHHhhcCCch---HHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 363 LIEAM------P------FEPT---------ESILGALLSACVIHQDLE---IGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 363 ~~~~~------~------~~p~---------~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
++++. + .-|+ ..+.+.|+..+.+.++.. +|+-+++......|. |..+-..++++|
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY 483 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHH
Confidence 11111 0 1111 124566777888777755 678888888888888 888888899999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCcc
Q 012108 419 ASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
.-.|-+..|.++|+.+.-..+..
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhh
Confidence 99999999999998885555443
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=1.7e-05 Score=61.36 Aligned_cols=110 Identities=9% Similarity=0.016 Sum_probs=82.5
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 012108 292 LLGEMNDSCVKAD-DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF 369 (471)
Q Consensus 292 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 369 (471)
.+++.... .|+ ......+...+...|++++|.+.++.+.. ..+.++..+..+..++.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455543 343 34455666777888888888888888877 34557778888888888888888888888877 33
Q ss_pred CC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 370 EP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 370 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.| +...+..+...+...|++++|...|++..+..|.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 34 5667777788888899999999999999888876
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=2.2e-05 Score=70.99 Aligned_cols=128 Identities=11% Similarity=0.036 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 012108 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319 (471)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 319 (471)
.....|+..+...++++.|+.+|+++...++.....++..+...++-.+|.+++++.... .+-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 445556677777788888888888888877777777888888888888999999988865 2335566666677788999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 012108 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370 (471)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 370 (471)
+++.|+++.+++.+ -.+.+..+|..|..+|.+.|+++.|+-.++.++.-
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999987 44556779999999999999999999999888533
No 141
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0017 Score=61.60 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 012108 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320 (471)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 320 (471)
+.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+..+ ++.-|.....+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 333344445556666666666666666666666666666666666665554443322 12345556666666666
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 012108 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELI 364 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 364 (471)
.++|.+++.+... . .-.+.+|.+.|++.+|.++-
T Consensus 760 ~~EA~KYiprv~~---l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG---L-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhhhhhccCC---h-------HHHHHHHHHhccHHHHHHHH
Confidence 6666666554432 1 13445556666665555443
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=4.9e-05 Score=59.43 Aligned_cols=115 Identities=11% Similarity=0.041 Sum_probs=59.6
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHhhcCCchH
Q 012108 318 AGLVQEGCELFSRMEKDFGVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTE----SILGALLSACVIHQDLEI 391 (471)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 391 (471)
.++...+...++.+.++.+-.+ .....-.+...+...|++++|...|+.+ ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555211111 1222233444555566666666666655 111222 133344555666677777
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
|+..++.... +...+..+...+++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7666655322 1124555666677777777777777766653
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.23 E-value=7.2e-05 Score=57.36 Aligned_cols=93 Identities=10% Similarity=-0.032 Sum_probs=69.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (471)
.-.+...+...|++++|.++|+-+ .+.| +..-|..|..++...|++++|+..+..+...+|+ ++..+..++.++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 334445556778888888877776 3344 4556677777777888888888888888888888 888888888888888
Q ss_pred CCHHHHHHHHHHhhhC
Q 012108 422 GQWEEANRWRNMMNDT 437 (471)
Q Consensus 422 g~~~~A~~~~~~m~~~ 437 (471)
|+.+.|.+.|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888877653
No 144
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.22 E-value=0.0034 Score=55.69 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=58.5
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 012108 244 ALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQE 323 (471)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 323 (471)
..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-.++... . -++..|..++.+|.+.|+..+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCHHH
Confidence 3344455556666666666666666666666666666666666655543321 1 123556666666666666666
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
|..++.++. +..-+..|.++|++.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 655555421 123455556666666665554333
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.21 E-value=1.9e-05 Score=56.63 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=71.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (471)
+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.+.++......|. +...+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 445566677778888888887776 3333 3456667777788888888898888888888877 677888888888888
Q ss_pred CCHHHHHHHHHHhhhCC
Q 012108 422 GQWEEANRWRNMMNDTG 438 (471)
Q Consensus 422 g~~~~A~~~~~~m~~~~ 438 (471)
|++++|...+++..+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999988888876544
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.19 E-value=5.9e-06 Score=55.17 Aligned_cols=67 Identities=12% Similarity=-0.046 Sum_probs=60.8
Q ss_pred CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCC
Q 012108 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG-QWEEANRWRNMMNDTGI 439 (471)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~ 439 (471)
++.+|..+...+...|++++|+..|+++++.+|. ++..|..++.+|.+.| ++++|++.+++..+.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888899999999999999999999999999 9999999999999999 79999999999877653
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.19 E-value=4.2e-06 Score=55.08 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=53.7
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
+...+...|++++|+..|+++++..|. ++..+..++.++...|++++|..+|+++.+..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456778899999999999999999999 9999999999999999999999999999877664
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.6e-06 Score=47.34 Aligned_cols=33 Identities=33% Similarity=0.629 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD 203 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 203 (471)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
No 149
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.16 E-value=0.0048 Score=55.23 Aligned_cols=404 Identities=11% Similarity=0.109 Sum_probs=221.5
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCc---ccHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 012108 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDI---IAWNSMLDAFASCGQMDHAMKLIDLMPLK 105 (471)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 105 (471)
-.++-+++.+. +.|...|-.|+.-|..+|..++.+++++++..|-+ .+|..-+.+-....++.....+|.+....
T Consensus 28 ~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 28 ELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 34666666654 56888999999999999999999999999998744 57888888877788899999888877655
Q ss_pred --ChhhHHHHHHHHHhcCCH------HHHHHHHhhc-----CC-CChhhHHHHHHH---------HHhCCCHHHHHHHHH
Q 012108 106 --DVTSFNIMISGYARIGKI------HSARYIFDKV-----PA-KDVVSWNSLILA---------YTNAGEMEKAGEMFK 162 (471)
Q Consensus 106 --~~~~~~~l~~~~~~~g~~------~~a~~~~~~~-----~~-~~~~~~~~l~~~---------~~~~~~~~~A~~~~~ 162 (471)
+...|..-+.-..+.+.. -...+.|+-. .+ .....|+..+.. +-.+.+++...+.+.
T Consensus 106 ~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 106 SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 555555555444333311 1111222222 12 233344443332 223445666677777
Q ss_pred hccc-c--Ch-------HHHHHHHHH-----HHh--cCCHHHHHHHHHHHHh--CCCCC----CHHHHHH----------
Q 012108 163 KMLV-K--NV-------ITWNTMVTG-----YLR--SQLYIEVVDLFDEMKA--GNVKP----DYLTVTS---------- 209 (471)
Q Consensus 163 ~~~~-~--~~-------~~~~~l~~~-----~~~--~~~~~~a~~~~~~m~~--~g~~p----~~~~~~~---------- 209 (471)
+++. | |. ..|..=++. +.. .--+..|.+.++++.. .|... +..+++-
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 7732 2 11 111111111 100 1124456666666532 23321 1122222
Q ss_pred -HHHHHHc-----cCC--hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh----------
Q 012108 210 -VLSACAN-----LGS--LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVF---------- 271 (471)
Q Consensus 210 -l~~~~~~-----~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 271 (471)
.|.--.. .|+ .+...-++++.... ++-.+.+|--....+...++-+.|+.......+..+.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ye 344 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYE 344 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHh
Confidence 1111000 000 11111223332222 2333444444455555667777777776654442111
Q ss_pred ----------hHHHHHHHHHh---cCChHHHHHH------HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 012108 272 ----------CWNAMILGLAL---HGYGYAALKL------LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332 (471)
Q Consensus 272 ----------~~~~l~~~~~~---~~~~~~a~~~------~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (471)
+|..+++.+.+ .++.+.+... ..+..-....--...|...++...+..-.+.|..+|-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 12222222211 1111111110 0110000001122446667777777788899999999998
Q ss_pred HhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHH-HHHHHHHhhcCCchHHHHHHHHHHHcCCC-CCch
Q 012108 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESIL-GALLSACVIHQDLEIGDRVAKMVCAKSNY-LSDG 409 (471)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ 409 (471)
+..-+.+++..+++++..++ .|+..-|..+|+-- ..-||...| .-.+.-+...++-+.|..+|+..++.-.. --..
T Consensus 425 k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~ 503 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKR 503 (660)
T ss_pred ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhH
Confidence 84337788888999888665 57888888888754 334555544 55666677888888999999866554322 0256
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 410 ELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
.|..++.--..-|+...+..+=++|..
T Consensus 504 iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 504 IYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 888888888888888777666665543
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.2e-06 Score=46.68 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 012108 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202 (471)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 202 (471)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888887777766
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.16 E-value=3.4e-05 Score=58.05 Aligned_cols=92 Identities=15% Similarity=-0.005 Sum_probs=43.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC--CchhHHHHHHHHH
Q 012108 347 MVDLLGRARLLDRAIELIEAM-PFEPT----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL--SDGELMMFANLYA 419 (471)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 419 (471)
++..+.+.|++++|.+.|..+ ...|+ ...+..+..++...|+++.|...++.+....|.. .+..+..++.++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 334444444444444444444 11111 1233334445555555555555555555544431 1334445555555
Q ss_pred hcCCHHHHHHHHHHhhhCC
Q 012108 420 SCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~ 438 (471)
+.|++++|...++++.+..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HhCChHHHHHHHHHHHHHC
Confidence 5555555555555555443
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=4.4e-06 Score=46.96 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 304 (471)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00015 Score=56.72 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 012108 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKAD---DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK--LEHYGCM 347 (471)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 347 (471)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|. ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44444444 3677777777777777652 222 123333456677788888888888888772 32222 2344456
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHH
Q 012108 348 VDLLGRARLLDRAIELIEAMPF-EPTESILGALLSACVIHQDLEIGDRVAKMV 399 (471)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (471)
...+...|++++|+..++.... ......+......+...|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777788888888888877632 223455666777788888888888888764
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=5.2e-06 Score=57.89 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhC-CCCC---CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 012108 355 RLLDRAIELIEAM-PFEP---TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRW 430 (471)
Q Consensus 355 g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (471)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.++. +......++.+|.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444555544444 1111 233333455555566666666666655 444443 344444556666666666666666
Q ss_pred HHH
Q 012108 431 RNM 433 (471)
Q Consensus 431 ~~~ 433 (471)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.10 E-value=7.7e-05 Score=56.11 Aligned_cols=104 Identities=13% Similarity=-0.011 Sum_probs=65.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHH
Q 012108 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT----ESILGALL 380 (471)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 380 (471)
++..+...+...|++++|.+.|..+.....-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445555666667777777777777765211111 1334555666777777777777777765 22222 34566666
Q ss_pred HHHhhcCCchHHHHHHHHHHHcCCCCCchhH
Q 012108 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411 (471)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (471)
.++...|++++|...++++.+..|. +....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG-SSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC-ChhHH
Confidence 7777788888888888888887776 54433
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=7.8e-06 Score=45.56 Aligned_cols=33 Identities=36% Similarity=0.444 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKA 303 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 303 (471)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777888888888888888887777766
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=2.4e-05 Score=65.79 Aligned_cols=110 Identities=10% Similarity=-0.021 Sum_probs=86.4
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHhhcCCch
Q 012108 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT-ESILGALLSACVIHQDLE 390 (471)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 390 (471)
.-..+.+++.+|+..|.++.+ -.+.|+..|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 346677899999999999987 45567888888889999999999998887776 55664 568999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 012108 391 IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425 (471)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 425 (471)
+|++.|+++++.+|. +......|-.+-.+.+...
T Consensus 167 ~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCC
Confidence 999999999999988 6655555555544444433
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=4.1e-05 Score=69.58 Aligned_cols=107 Identities=7% Similarity=-0.028 Sum_probs=88.8
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCC
Q 012108 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQD 388 (471)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 388 (471)
-...+...|+++.|++.|+++.+ ..+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 35566788999999999999998 44556888888999999999999999999988 4455 56788888999999999
Q ss_pred chHHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 012108 389 LEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420 (471)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (471)
+++|+..|+++++.+|. ++.....+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~-~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPG-DSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99999999999999998 77766665554333
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=9.6e-05 Score=59.74 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-PFEPT----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|. +...+..++.+|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 444444444555555555555444 11111 234555556666666666666666666666665 555666666666
Q ss_pred HhcCC--------------HHHHHHHHHHhhhCCCc
Q 012108 419 ASCGQ--------------WEEANRWRNMMNDTGIV 440 (471)
Q Consensus 419 ~~~g~--------------~~~A~~~~~~m~~~~~~ 440 (471)
...|+ +++|.+++++..+.++.
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 66555 45666666666555543
No 160
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.97 E-value=0.012 Score=52.84 Aligned_cols=402 Identities=11% Similarity=0.010 Sum_probs=223.9
Q ss_pred CCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CCcccHHHHH
Q 012108 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDIIAWNSML 83 (471)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 83 (471)
.+.|..+|-.|++.+...|..++..+.+++|..- ++--..+|...+.+-....++...+.+|.+... -+...|...+
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl 116 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYL 116 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHH
Confidence 3456679999999999999999999999999754 344556788778877778999999999998765 3556666665
Q ss_pred HHHHcCCC---------HHHHHHHHhcC--CCC-ChhhHHHHHH---HHH------hcCCHHHHHHHHhhcCCC------
Q 012108 84 DAFASCGQ---------MDHAMKLIDLM--PLK-DVTSFNIMIS---GYA------RIGKIHSARYIFDKVPAK------ 136 (471)
Q Consensus 84 ~~~~~~g~---------~~~A~~~~~~~--~~~-~~~~~~~l~~---~~~------~~g~~~~a~~~~~~~~~~------ 136 (471)
.---+.+. +-+|.++.-.. ..+ ....|+..+. ..- ...+++.....+.+++..
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 54333221 22233322111 011 2222332222 212 223345555556665321
Q ss_pred ----ChhhHHHHHHHH-----Hh--CCCHHHHHHHHHhccc-------c---ChHHHHHHHH-----------HHHhcC-
Q 012108 137 ----DVVSWNSLILAY-----TN--AGEMEKAGEMFKKMLV-------K---NVITWNTMVT-----------GYLRSQ- 183 (471)
Q Consensus 137 ----~~~~~~~l~~~~-----~~--~~~~~~A~~~~~~~~~-------~---~~~~~~~l~~-----------~~~~~~- 183 (471)
|-..|..=++-. .- .--+-.|...+++... . +..++|.+.+ .-...|
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 111111111100 00 0112334444444310 0 1222222111 100000
Q ss_pred ----C--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 012108 184 ----L--YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257 (471)
Q Consensus 184 ----~--~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (471)
+ ....--++++.... +......|----.-+...++-+.|.+... .|++..+.....+...|.-.++-+.
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~----rg~~~spsL~~~lse~yel~nd~e~ 351 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVE----RGIEMSPSLTMFLSEYYELVNDEEA 351 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHH----hcccCCCchheeHHHHHhhcccHHH
Confidence 0 00011111111110 01111111111122233455555555443 3333333333334444444444444
Q ss_pred HHHHHhcCCC---------------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 012108 258 SLEVFYKSQV---------------------------------KDVFCWNAMILGLALHGYGYAALKLLGEMNDSC-VKA 303 (471)
Q Consensus 258 a~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p 303 (471)
....|++..+ .-..+|...+....+....+.|..+|-++.+.| +.+
T Consensus 352 v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h 431 (660)
T COG5107 352 VYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGH 431 (660)
T ss_pred HhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCc
Confidence 4443332110 112467778888888888999999999999998 667
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC--HhHHHHH
Q 012108 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPT--ESILGAL 379 (471)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l 379 (471)
+...++.++.-++ .|+...|..+|+.-.. .++.++..-+..+..+.+.++-+.|..+|+.. .+..+ ..+|..+
T Consensus 432 ~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~km 508 (660)
T COG5107 432 HVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKM 508 (660)
T ss_pred ceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHH
Confidence 7888888888766 5788899999998776 44455555566777888999999999999965 23333 5789999
Q ss_pred HHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
+.--..-|+...+..+-+++.+.-|. ..+...+..-|
T Consensus 509 i~YEs~~G~lN~v~sLe~rf~e~~pQ--en~~evF~Sry 545 (660)
T COG5107 509 IEYESMVGSLNNVYSLEERFRELVPQ--ENLIEVFTSRY 545 (660)
T ss_pred HHHHHhhcchHHHHhHHHHHHHHcCc--HhHHHHHHHHH
Confidence 99989999999999998999888776 43333333333
No 161
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.019 Score=54.42 Aligned_cols=233 Identities=14% Similarity=0.109 Sum_probs=137.6
Q ss_pred CCchhHHHHHHHHHhccCCHhHHHHHhcccCC-CCcccHHHHH----------HHHHcCCCHHHHHHHHhcCCCCChhhH
Q 012108 42 CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE-KDIIAWNSML----------DAFASCGQMDHAMKLIDLMPLKDVTSF 110 (471)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li----------~~~~~~g~~~~A~~~~~~~~~~~~~~~ 110 (471)
.|.+..|..+...-...-.++.|+..|-+... +.+...-.|- ..-+--|++++|.+++-.+.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 47778888888877777888888888877654 3222111111 111225889999999888876653
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCH
Q 012108 111 NIMISGYARIGKIHSARYIFDKVPAK-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLY 185 (471)
Q Consensus 111 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (471)
.+..+.+.|++-.+.++++.--.. -...++.+.+.+.....|++|.+.|...... ...+.++.+..++
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le~f 838 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLELF 838 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHHhh
Confidence 456667778888777777765322 1246777788888888888888877664221 1244555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012108 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265 (471)
Q Consensus 186 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (471)
++-..+-..+ +.+....-.+...+.+.|.-++|.+.+- +.+ .| ..-+..+...++|.+|.++-+..
T Consensus 839 ~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L---r~s-~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 839 GELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL---RRS-LP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH---hcc-Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544443332 3344445556666666676666655442 222 12 12344556666677777666655
Q ss_pred CCCChhhHH--------------HHHHHHHhcCChHHHHHHHHHHHh
Q 012108 266 QVKDVFCWN--------------AMILGLALHGYGYAALKLLGEMND 298 (471)
Q Consensus 266 ~~~~~~~~~--------------~l~~~~~~~~~~~~a~~~~~~~~~ 298 (471)
.-|.+.+.- --|..+.+.|++-+|-+++.+|.+
T Consensus 905 ~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 905 QLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred cchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 444332211 123345566777777777777643
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.93 E-value=0.008 Score=52.95 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCC--hhH
Q 012108 273 WNAMILGLALHGYGYAALKLLGEMNDSCV-----KADDI-TFIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRK--LEH 343 (471)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~ 343 (471)
+..+...+.+.|++++|.++|++....-. +.+.. .|...+-++...|+...|...+++.... .++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34456666777777777777777654321 11111 2222333445567777777777776642 122222 334
Q ss_pred HHHHHHHHhh--cCCHHHHHHHHHhCC
Q 012108 344 YGCMVDLLGR--ARLLDRAIELIEAMP 368 (471)
Q Consensus 344 ~~~l~~~~~~--~g~~~~A~~~~~~~~ 368 (471)
...|+.++-. ...+.+|..-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4555665543 345666666666664
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00014 Score=51.94 Aligned_cols=89 Identities=12% Similarity=0.025 Sum_probs=39.2
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCch
Q 012108 313 SACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLE 390 (471)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 390 (471)
..+...|++++|...++.+.+ ..+.+...+..+..++...|++++|.+.++.. ...| +..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444444444444443 12222233444444444444445554444443 1112 2234444445555555555
Q ss_pred HHHHHHHHHHHcC
Q 012108 391 IGDRVAKMVCAKS 403 (471)
Q Consensus 391 ~a~~~~~~~~~~~ 403 (471)
.|...++...+..
T Consensus 86 ~a~~~~~~~~~~~ 98 (100)
T cd00189 86 EALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHccC
Confidence 5555555554443
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=2.4e-05 Score=51.96 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=48.8
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
...|++++|+++|+++.+..|. +...+..++.+|.+.|++++|.++++++....+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4678999999999999999999 8999999999999999999999999998877665
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.90 E-value=4.1e-05 Score=53.34 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 012108 284 GYGYAALKLLGEMNDSCVK-ADDITFIGLLSACSHAGLVQEGCELFSR 330 (471)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (471)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445555555555443210 1222233344445555555555555544
No 166
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.001 Score=58.61 Aligned_cols=155 Identities=11% Similarity=-0.075 Sum_probs=100.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCCChhHH------------
Q 012108 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS--ACSHAGLVQEGCELFSRMEKDFGVTRKLEHY------------ 344 (471)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------ 344 (471)
++...|++++|...--...+.. ++ ..+..+++ ++.-.++.+.+...|++... ..|+...-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 4556777777777666655432 11 22333333 33456777777777777765 23432211
Q ss_pred -HHHHHHHhhcCCHHHHHHHHHhC-CC-----CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 012108 345 -GCMVDLLGRARLLDRAIELIEAM-PF-----EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417 (471)
Q Consensus 345 -~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (471)
..-..-..+.|++.+|.+.|.+. .+ .|+...|.....+..+.|+.++|+.-.+.+.++++. -...|..-+.+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c 330 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANC 330 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHH
Confidence 11122335678888888888876 33 344556766777777888888888888888888776 56666677777
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCc
Q 012108 418 YASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
+...++|++|.+-+++..+..-.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 78888888888888887665443
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.87 E-value=0.00036 Score=63.44 Aligned_cols=102 Identities=12% Similarity=-0.040 Sum_probs=83.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcC
Q 012108 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355 (471)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (471)
....+...|++++|+..|++++... +-+...|..+..++...|++++|+..++++.. -.+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 4556778899999999999999863 33567888888999999999999999999988 34556888999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHhHHHHHH
Q 012108 356 LLDRAIELIEAM-PFEPTESILGALL 380 (471)
Q Consensus 356 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 380 (471)
++++|...|++. .+.|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999987 5566554444443
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00059 Score=57.98 Aligned_cols=109 Identities=15% Similarity=0.007 Sum_probs=88.0
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHhhc---CCchHHHHHHHHHHHcCCCCCchhH
Q 012108 337 VTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFE-PTESILGALLSACVIH---QDLEIGDRVAKMVCAKSNYLSDGEL 411 (471)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (471)
.+-|...|-.|...|.+.|+++.|..-|.+. .+. +++..+..+..++... ....++..+|+++++.+|. ++...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 4557888999999999999999999999887 333 4556666666665433 2466789999999999999 99999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCcce
Q 012108 412 MMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSS 446 (471)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 446 (471)
..|+..+...|++.+|...|+.|.+..+..++...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999999988877665443
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.86 E-value=5.1e-05 Score=51.25 Aligned_cols=62 Identities=13% Similarity=-0.035 Sum_probs=54.7
Q ss_pred HHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
...|.+.+++++|.++++.+++.+|. ++..+...+.++.+.|++++|.+.+++..+.++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 35678899999999999999999999 999999999999999999999999999988777544
No 170
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.00042 Score=49.31 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCchhHH
Q 012108 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPDYLTVTSVLSACANLG--------SLETGARIHVYATDNGLASNPHAT 242 (471)
Q Consensus 172 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 242 (471)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+|++++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999887543 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 012108 243 TALIDMYAK 251 (471)
Q Consensus 243 ~~l~~~~~~ 251 (471)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.83 E-value=0.0059 Score=47.87 Aligned_cols=126 Identities=10% Similarity=0.043 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHhHH
Q 012108 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP---TESIL 376 (471)
Q Consensus 301 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 376 (471)
..|+...-..|..++.+.|+..+|...|++... -.+..|......+.++....+++..|...++.+ ..+| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 356666666677777788888888888888776 244556777777777777778888888777776 2122 22233
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 012108 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429 (471)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 429 (471)
..+.+++...|.+..|+..|+.+...-|. +..-......+.++|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg--~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG--PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC--HHHHHHHHHHHHHhcchhHHHH
Confidence 44667777888888888888888777665 4444445566677776665543
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00093 Score=58.56 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA-CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (471)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+ .++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467788888888888999999999998653 2234445444444 3335777779999999998 46677888999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 350 LLGRARLLDRAIELIEAM-PFEPT----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+...++.+++.+.-+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999987 22233 348888998888999999999999999887665
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.80 E-value=0.0056 Score=57.34 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
.+...+..-+.+...+..|-++|.++-. ...+++.....+++.+|+.+-++.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhC
Confidence 3444444444555566666666666654 234566666667777777776666
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0011 Score=58.48 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=24.8
Q ss_pred HHHHHHhC-CCHHHHHHHHHhccc-----c----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012108 144 LILAYTNA-GEMEKAGEMFKKMLV-----K----NVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197 (471)
Q Consensus 144 l~~~~~~~-~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 197 (471)
+...|... |++++|.+.|++... . -...+..+...+.+.|++++|.++|++...
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444 555555555555411 0 112344445555555666666666655544
No 175
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=3.6e-05 Score=41.73 Aligned_cols=29 Identities=31% Similarity=0.747 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGN 199 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 199 (471)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 176
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0089 Score=49.66 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh-----HHHH
Q 012108 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH-----ATTA 244 (471)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ 244 (471)
...+.++.++.-.|.+.-....+++..+...+.+......+.+...+.|+.+.|..++++..+..-..+.. +...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45667778888889999999999999987766777778888888899999999999999877644333333 3334
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012108 245 LIDMYAKCGSIEQSLEVFYKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309 (471)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 309 (471)
....|.-.+++..|...+.++... ++..-|.-.-+..-.|+..+|++.++.|... .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 445666778888888888877763 4555565555666678999999999999886 45544443
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.00034 Score=56.33 Aligned_cols=91 Identities=12% Similarity=-0.043 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (471)
...+..+...+...|++++|...|++. ...|+ ..++..+...+...|++++|+..++++.+..|. ....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 455566666666777777777777766 22222 346777888888888888888888888888777 667777777
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 012108 416 NLYA-------SCGQWEEANRWRN 432 (471)
Q Consensus 416 ~~~~-------~~g~~~~A~~~~~ 432 (471)
..+. +.|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 7777 7778775544444
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.001 Score=53.73 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 012108 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD--YLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246 (471)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 246 (471)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566666677777777777777777765432222 2456666667777777777777777777654 34455666666
Q ss_pred HHHHhcCChHHHH
Q 012108 247 DMYAKCGSIEQSL 259 (471)
Q Consensus 247 ~~~~~~~~~~~a~ 259 (471)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6676666654433
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.0017 Score=61.77 Aligned_cols=138 Identities=7% Similarity=-0.038 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc--------CCHHHHHHHHHhC
Q 012108 301 VKADDITFIGLLSACSH--A---GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA--------RLLDRAIELIEAM 367 (471)
Q Consensus 301 ~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 367 (471)
.+.+...|..++++... . ++...|..+|+++.+ -.+.....|..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34555666666665332 2 235567777777766 2222344444443333221 1233444444432
Q ss_pred ----CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 368 ----PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 368 ----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
....++..+..+.-.....|++++|...++++++.+| +...|..+++++...|+.++|.+.+++....++..+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 1333556677666666677888888888888888886 467888888888888888888888888887777655
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00038 Score=58.79 Aligned_cols=123 Identities=11% Similarity=-0.001 Sum_probs=92.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCH
Q 012108 278 LGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357 (471)
Q Consensus 278 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (471)
.-+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+.... -.+....+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 34678899999999999999862 34667777789999999999999998888886 3334578899999999999999
Q ss_pred HHHHHHHHhC-CCCCCHhHHHHHHHHH-hhcCCch---HHHHHHHHHHHcC
Q 012108 358 DRAIELIEAM-PFEPTESILGALLSAC-VIHQDLE---IGDRVAKMVCAKS 403 (471)
Q Consensus 358 ~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~---~a~~~~~~~~~~~ 403 (471)
++|.+.|++. .+.|+-.+|..=+... .+.+..+ .+...++.....+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig 216 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIG 216 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhcc
Confidence 9999999987 7889887775544433 2333333 3444444444444
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.6e-05 Score=41.27 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=26.5
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHHhcc
Q 012108 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGF 41 (471)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 41 (471)
++|+.++++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788999999999999999999999888763
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.73 E-value=0.00043 Score=60.69 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL-LGRARLLDRAIELIEAM--PFEPTESILGALLSA 382 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 382 (471)
.+|..+++...+.+..+.|..+|.++.+. ...+...|-..... |...++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788889999999999999999999873 22334445444444 33357777799999988 455677888999999
Q ss_pred HhhcCCchHHHHHHHHHHHcCCC-C-CchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 383 CVIHQDLEIGDRVAKMVCAKSNY-L-SDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
+...++.+.|..+|++.+..-+. . ....|..++..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999877443 1 1258899999999999999999999988765
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.70 E-value=0.019 Score=49.02 Aligned_cols=59 Identities=7% Similarity=-0.048 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHccCChHHHHHHHHHHHHcC
Q 012108 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT----VTSVLSACANLGSLETGARIHVYATDNG 234 (471)
Q Consensus 174 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (471)
.....+...|++++|.+.|+++... .|+... .-.+..++.+.++++.|...+++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444555667777777777776654 232221 1234456666777777777777766654
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.68 E-value=0.00088 Score=61.16 Aligned_cols=117 Identities=11% Similarity=0.137 Sum_probs=92.5
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHhcc-cc-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012108 136 KDVVSWNSLILAYTNAGEMEKAGEMFKKML-VK-----NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209 (471)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 209 (471)
.+......+++.+....+++.+..++.+.. .| -..+..++++.|.+.|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 355556667777777778888888887772 22 234556899999999999999999999889999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012108 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252 (471)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (471)
++..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999998888777666666666655555554
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0031 Score=60.12 Aligned_cols=137 Identities=10% Similarity=-0.126 Sum_probs=97.4
Q ss_pred CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 012108 267 VKDVFCWNAMILGLALH-----GYGYAALKLLGEMNDSCVKADD-ITFIGLLSACSHA--------GLVQEGCELFSRME 332 (471)
Q Consensus 267 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 332 (471)
..+...|...+++.... +....|..+|++..+. .|+. ..+..+..++... .+...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34677888877775432 2367899999998885 5654 3444433333221 12334444444443
Q ss_pred HhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.....+.++..|.++.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++...+|.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 31124445677888877777889999999999988 67788889999999999999999999999999999998
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0017 Score=50.01 Aligned_cols=85 Identities=8% Similarity=-0.036 Sum_probs=34.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHH
Q 012108 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIG 392 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 392 (471)
+...|++++|..+|+.+.. -.+.+...|-.|..++-..|++++|+..|... .+.| |+..+..+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 3334444444444444433 12223333344444444444444444444433 1112 233344444444444444444
Q ss_pred HHHHHHHHH
Q 012108 393 DRVAKMVCA 401 (471)
Q Consensus 393 ~~~~~~~~~ 401 (471)
.+.|+.++.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 444444443
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.039 Score=49.11 Aligned_cols=273 Identities=10% Similarity=0.041 Sum_probs=149.1
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCC
Q 012108 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91 (471)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 91 (471)
+|..+.......|+.+-|..+++. +|+..- =+..+.+.|+.+.|+.---+-.+|| -+|..|+..--+. .
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~AL~kAi~SgD~D-Li~~vLl~L~~~l-~ 70 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELALNKAIESGDTD-LIYLVLLHLKRKL-S 70 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHHHHHHHHcCCcc-HHHHHHHHHHHhC-C
Confidence 577788888888888888887663 454432 2455566777777743222222222 2455555433222 2
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHH-------HHHHHHHhc
Q 012108 92 MDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEME-------KAGEMFKKM 164 (471)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~A~~~~~~~ 164 (471)
...-..++.. .+.. ..+...|++..+.+.-..+|.+--.........+-.++.. .+.+ .|.+.|...
T Consensus 71 ~s~f~~il~~----~p~a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~~~y~~~ 144 (319)
T PF04840_consen 71 LSQFFKILNQ----NPVA-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQKLYSKS 144 (319)
T ss_pred HHHHHHHHHh----Ccch-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHhc
Confidence 2222222222 2221 2344455665555555555543211111111111122211 2322 233333322
Q ss_pred cccChHHHHHHHHHHHhcCCHHHHHHHHHH---HHh-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh
Q 012108 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDE---MKA-GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPH 240 (471)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---m~~-~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (471)
.. ......++ ++-.++++. +.+ .+......+.+..+.-+...|+...|.++-.+. . .|+..
T Consensus 145 k~--~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkr 209 (319)
T PF04840_consen 145 KN--DAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKR 209 (319)
T ss_pred ch--hHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHH
Confidence 11 11111111 111122211 111 122222335555666777888888887775544 3 57888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 012108 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL 320 (471)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 320 (471)
.|-..+.+++..++|++-.++-.. +.++..|..++.+|.+.|+..+|..+..+ ++ +..-+..|.+.|+
T Consensus 210 fw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~ 277 (319)
T PF04840_consen 210 FWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGD 277 (319)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCC
Confidence 899999999999999988887654 55789999999999999999999988877 22 2445666778888
Q ss_pred HHHHHHHH
Q 012108 321 VQEGCELF 328 (471)
Q Consensus 321 ~~~a~~~~ 328 (471)
+.+|.+.-
T Consensus 278 ~~~A~~~A 285 (319)
T PF04840_consen 278 YKEAAQEA 285 (319)
T ss_pred HHHHHHHH
Confidence 88886553
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.65 E-value=0.0023 Score=47.38 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=54.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHH
Q 012108 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDY--LTVTSVLSACANLGSLETGARIHVYATDNGLAS---NPHATTALIDMY 249 (471)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 249 (471)
+..++-..|+.++|+.+|++....|..... ..+..+...+...|+.++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 445566677777788888777777655442 344455666777777777777777776542 11 223333344455
Q ss_pred HhcCChHHHHHHHhc
Q 012108 250 AKCGSIEQSLEVFYK 264 (471)
Q Consensus 250 ~~~~~~~~a~~~~~~ 264 (471)
...|+.++|++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 666666666666544
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0022 Score=51.65 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 012108 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP--DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247 (471)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (471)
..|..+...+...|++++|+..|++.......+ ...++..+...+...|+.++|...++...... +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 445566666667777777777777766542222 12356666667777777777777777776553 333444555555
Q ss_pred HHH
Q 012108 248 MYA 250 (471)
Q Consensus 248 ~~~ 250 (471)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.58 E-value=0.00097 Score=58.76 Aligned_cols=132 Identities=9% Similarity=-0.018 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH---HhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRME---KDFGVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-------P-FEPTE 373 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 373 (471)
..|..|.+.|.-.|+++.|+...+.-. +++|... ....+..|..++.-.|+++.|.+.|+.. + -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456677777777888888877655322 2244433 3456777888888888998888888754 2 12234
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHc----CCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 374 SILGALLSACVIHQDLEIGDRVAKMVCAK----SNY-LSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
....+|..+|.-..++++|+.++.+=+.. +-. -....+.+|+.+|...|..++|+.+.+.-++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56677888888888888888877654432 211 13567888999999999999988877766553
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.57 E-value=0.0003 Score=46.12 Aligned_cols=59 Identities=12% Similarity=-0.044 Sum_probs=41.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 347 MVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
+...+.+.|++++|.+.|+++ ...| +...+..+..++...|++++|...|+++++..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 345566777777777777776 3334 4567777777777888888888888888777776
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.021 Score=44.90 Aligned_cols=97 Identities=12% Similarity=-0.029 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHH
Q 012108 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-----KDVFCWNAM 276 (471)
Q Consensus 202 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l 276 (471)
|+...-..|..+....|+..+|...|++....-...|....-.+.++....++...|...++++.+ ..+.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 333333344444455555555555555544433344444444445555555555555444444332 122333344
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 012108 277 ILGLALHGYGYAALKLLGEMND 298 (471)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~ 298 (471)
...+...|++.+|...|+...+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4445555555555555555444
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.086 Score=50.71 Aligned_cols=319 Identities=12% Similarity=0.083 Sum_probs=178.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC---HHHHHHHHhhcCC--CChhhHHHHHHHHHhC
Q 012108 80 NSMLDAFASCGQMDHAMKLIDLMPLKD---VTSFNIMISGYARIGK---IHSARYIFDKVPA--KDVVSWNSLILAYTNA 151 (471)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 151 (471)
..+|+-+...+.+..|..+-..+..+. ...|.....-+.+..+ -+-+..+-+++.. .+..+|..+.......
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 346666777788888888888877663 4566677777666532 2233333333333 3556777788888888
Q ss_pred CCHHHHHHHHHhcccc--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 012108 152 GEMEKAGEMFKKMLVK--------NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223 (471)
Q Consensus 152 ~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 223 (471)
|+.+.|..+++.=+.. +..-+..-+.-+...|+.+....++-.+.+. .+...+...+ .+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchhh
Confidence 8888888887654221 2223444455555666666666655555432 1222222111 223344
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh-cC------CCCChhhHHHHHHHHHhcCC----------h
Q 012108 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY-KS------QVKDVFCWNAMILGLALHGY----------G 286 (471)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~------~~~~~~~~~~l~~~~~~~~~----------~ 286 (471)
..+|.+..+..-.. .+-..| ..++...+...|. +- ..+-.........++.+... .
T Consensus 592 ~~lY~~~~r~~~~~------~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 592 LSLYRQFMRHQDRA------TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hHHHHHHHHhhchh------hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 44444443321000 011112 2222222222221 00 00111112223333333322 1
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 012108 287 YAALKLLGEMNDS-CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365 (471)
Q Consensus 287 ~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 365 (471)
.+-+++.+.+..+ |..-...+.+--+.-+...|+-.+|.++-.+.+- ||...|-.-+.+++..+++++-+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 1122222233222 3333444556666667778899999888777665 888888888889999999998888877
Q ss_pred hCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 012108 366 AMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWR 431 (471)
Q Consensus 366 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (471)
..+ .+.-|.....+|.+.|+.++|.+.+-+. .-+.....+|.+.|++.+|.+.-
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv---------~~l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRV---------GGLQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhcc---------CChHHHHHHHHHhccHHHHHHHH
Confidence 764 2455666778899999999998877542 11226788888999988887643
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.55 E-value=0.0016 Score=46.48 Aligned_cols=79 Identities=8% Similarity=-0.026 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCCChhHH
Q 012108 274 NAMILGLALHGYGYAALKLLGEMNDSCV-KADDITFIGLLSACSHAG--------LVQEGCELFSRMEKDFGVTRKLEHY 344 (471)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (471)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.+.. .+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 4456666677999999999999999999 899999999998876542 34567788899987 6899999999
Q ss_pred HHHHHHHhh
Q 012108 345 GCMVDLLGR 353 (471)
Q Consensus 345 ~~l~~~~~~ 353 (471)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887754
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.55 E-value=0.032 Score=47.68 Aligned_cols=62 Identities=6% Similarity=-0.069 Sum_probs=41.8
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHhccc--cC-hHH---HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012108 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLV--KN-VIT---WNTMVTGYLRSQLYIEVVDLFDEMKAG 198 (471)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~ 198 (471)
+....-.....+.+.|++++|.+.|+.+.. |+ ... .-.++.++.+.+++++|...+++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333333445556778888888888888833 22 222 234667788889999999999888775
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.53 E-value=0.002 Score=58.96 Aligned_cols=113 Identities=17% Similarity=0.121 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHH
Q 012108 203 DYLTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV----KDVFCWNAM 276 (471)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l 276 (471)
+......+++.+....+.+.+..++-..... ....-+.|..++++.|.+.|..+.++.+++.=.. +|..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444444444444455555544444432 1112223334555555555555555555443222 445555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315 (471)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 315 (471)
+..+.+.|++..|.++...|..++...++.|+..-+.+|
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 555555555555555555554444444444444444333
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.49 E-value=0.0016 Score=52.59 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=71.2
Q ss_pred HHHHHhc--cccChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-------------
Q 012108 158 GEMFKKM--LVKNVITWNTMVTGYLR-----SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL------------- 217 (471)
Q Consensus 158 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------------- 217 (471)
.+.|+.. ..++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 44566666666666654 356666777778888888888888888888877542
Q ss_pred ---CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 012108 218 ---GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254 (471)
Q Consensus 218 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (471)
.+-+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2446688999999999999999999999998877655
No 198
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.48 E-value=0.096 Score=49.20 Aligned_cols=396 Identities=12% Similarity=0.047 Sum_probs=212.0
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--C-CcccHHHHHHHHH
Q 012108 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--K-DIIAWNSMLDAFA 87 (471)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 87 (471)
..|..||..-....+.+.+..+++.++.. .|.--.-|......=.+.|..+.+.++|++... | ++..|......+.
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34555665555555566677777777754 233334556666666677788888888887654 2 4445555444332
Q ss_pred -cCCCHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh---C------
Q 012108 88 -SCGQMDHAMKLIDLMPLK------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTN---A------ 151 (471)
Q Consensus 88 -~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~------ 151 (471)
..|+.+...+.|+....- ....|...+.--...+++.....++++.++-....++..-.-|.+ .
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhh
Confidence 456666666666665432 444566666666666777777777777755444433333322221 1
Q ss_pred CCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHH-------HHHccCChHH
Q 012108 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLT--VTSVLS-------ACANLGSLET 222 (471)
Q Consensus 152 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~l~~-------~~~~~~~~~~ 222 (471)
...+++.++=...... ......+...+-.+. .+...+-+.+..+ .+.+-. .+-.......
T Consensus 205 ~~~d~~~~l~~~~~~~---------~~~~~~~~~~e~~~~--~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAER---------SKITHSQEPLEELEI--GVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEE 273 (577)
T ss_pred cCHHHHHHHhhhHHhh---------hhcccccChhHHHHH--HHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 1111111111111000 000000111111110 0111110100000 001111 1111112222
Q ss_pred HHHHHHHHHHcC---C----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHH
Q 012108 223 GARIHVYATDNG---L----ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD---VFCWNAMILGLALHGYGYAALKL 292 (471)
Q Consensus 223 a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 292 (471)
....++.-++.- + +++..+|...+..-.+.|+.+.+.-+|++...|- ...|-..+.-....|+.+-|..+
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 222233322211 1 2345678888888889999999999998876652 24555555555566888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-
Q 012108 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-LEHYGCMVDLLGRARLLDRAI---ELIEAM- 367 (471)
Q Consensus 293 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~- 367 (471)
+....+--++-.+.+-..-...+-..|+++.|..+++.+.++ . |+ ...-..-+....+.|+.+.+. +++...
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~ 430 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY 430 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc
Confidence 877665433322222222222344578999999999999984 3 44 333334445566788888887 444444
Q ss_pred CCCCCHhHHHHHHHH-----HhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 012108 368 PFEPTESILGALLSA-----CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422 (471)
Q Consensus 368 ~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (471)
...-+..+...+.-- +.-.++.+.|..++.++.+..|. +...|..+++.....+
T Consensus 431 ~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 431 EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 222233333322222 33567899999999999999988 8888888888777665
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.44 E-value=0.0052 Score=45.58 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=53.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHh
Q 012108 276 MILGLALHGYGYAALKLLGEMNDSCVKAD--DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR-KLEHYGCMVDLLG 352 (471)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 352 (471)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667777777777777777765544 23455566677777777777777777766321111 2222222334555
Q ss_pred hcCCHHHHHHHHH
Q 012108 353 RARLLDRAIELIE 365 (471)
Q Consensus 353 ~~g~~~~A~~~~~ 365 (471)
..|+.++|.+.+-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 6667666666553
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0014 Score=56.35 Aligned_cols=60 Identities=7% Similarity=-0.102 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 378 ALLSACVIHQDLEIGDRVAKMVCAKSNY--LSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
-+..+|...|++++|...|+.+.+..|. ..+..+..++.++...|++++|..+++++.+.
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333 01222333344444445555555555444443
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.43 E-value=0.00078 Score=44.59 Aligned_cols=49 Identities=20% Similarity=0.174 Sum_probs=25.7
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
..|++++|.++|+++.. ..+.+...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555554 23334445555555555555555555555555
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.41 E-value=0.048 Score=45.33 Aligned_cols=178 Identities=13% Similarity=0.020 Sum_probs=83.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012108 175 MVTGYLRSQLYIEVVDLFDEMKAGNVK--PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC 252 (471)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (471)
....+...|++.+|.+.|+++...-.. --......++.++.+.|+++.|...++..++.-......-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455566666666666666543111 111223344555666666666666666665543111111122222222111
Q ss_pred CChHHHHHHHhcCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 012108 253 GSIEQSLEVFYKSQVKD-------VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325 (471)
Q Consensus 253 ~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 325 (471)
....... ....| ...+..++.-|-.+....+|...+..+... -..--..+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHH
Confidence 1111100 00001 123445556666666666666666655432 0111223566688888888888
Q ss_pred HHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH
Q 012108 326 ELFSRMEKDFGVTRK-LEHYGCMVDLLGRARLLDRAI 361 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 361 (471)
.-++.+.+.+.-.+. ......++.+|.+.|..+.+.
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888874322221 344566677777777776443
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.0005 Score=45.71 Aligned_cols=64 Identities=16% Similarity=0.040 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcC-CchHHHHHHHHHHHcCC
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQ-DLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 404 (471)
+..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666666666777777777776665 2233 4556677777777777 57777777777777665
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.015 Score=48.36 Aligned_cols=134 Identities=8% Similarity=-0.107 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-----H
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHY-----G 345 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 345 (471)
...+.++..+.-.|.+.-....+.+.++...+.++.....+.+.-.+.|+.+.|...|+...+..+ ..+.... .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345566667777788888888888888876566777888888888889999999999997776432 2222222 2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCC--CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 346 CMVDLLGRARLLDRAIELIEAMPF--EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.....|.-.+++..|...+.++.. +.++...|.-.-+..-.|+...|.+.++.+.+..|.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 333345667788888888888732 223444444444445678888999999988888877
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.088 Score=47.04 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 012108 411 LMMFANLYASCGQWEEANRWR 431 (471)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~ 431 (471)
|...+.+|...++..+..+..
T Consensus 417 FkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 417 FKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHHhcCHHHHhhcc
Confidence 445677888888887776643
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.18 Score=48.20 Aligned_cols=200 Identities=11% Similarity=0.057 Sum_probs=119.5
Q ss_pred CCCcccHHHHHHHHhhccchhHHHHHHHHHHHh-cc--------CCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcc
Q 012108 7 HADNYSFPLLLKAAGILSSSCIGLMLHGQTIKT-GF--------CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDII 77 (471)
Q Consensus 7 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 77 (471)
.|-+..|..|..+....-.++.|...|-+.... |+ -.+.....+=+.+ --|++++|++++-++.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 466667777777766666677777666544321 11 1122222222222 35899999999988877653
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCC
Q 012108 78 AWNSMLDAFASCGQMDHAMKLIDLMPLK-----DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAG 152 (471)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (471)
.|..+.+.|++-....+++.--.. -..+|+.+...++....+++|.+.+..... -...++++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHHHH
Confidence 467778888888888888764433 235788888888888888888888776522 123455666666
Q ss_pred CHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 012108 153 EMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHV 228 (471)
Q Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (471)
++++-+.+...+++ +....-.+...+...|.-++|.+.|-+- + .|. ..+..|...++|.+|.++-+
T Consensus 837 ~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 837 LFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 66665555555433 3344455666666677766666655332 1 111 22345555566666555543
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.26 E-value=0.12 Score=45.77 Aligned_cols=282 Identities=15% Similarity=0.181 Sum_probs=180.5
Q ss_pred HHHHHHHH--HhCCCHHHHHHHHHhc---cccChHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHH
Q 012108 141 WNSLILAY--TNAGEMEKAGEMFKKM---LVKNVITWNTMVT--GYLRSQLYIEVVDLFDEMKAGNVKPDYLTV--TSVL 211 (471)
Q Consensus 141 ~~~l~~~~--~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~l~ 211 (471)
|.+|-.++ .-.|+-..|.++-.+. +..|....-.++. +-.-.|+++.|.+-|+.|.. .|..... -.|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHH
Confidence 44444333 3456777777666554 3334444333433 34457899999999999876 2333222 1222
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChh--hHHHHHHHHH---
Q 012108 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-----KDVF--CWNAMILGLA--- 281 (471)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~--- 281 (471)
-..-+.|+.+.|.++-+..-... +.-.......+...|..|+++.|+++++.-.. ++.. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 23346788888888888776654 44567788889999999999999999875332 3321 1122222211
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 012108 282 LHGYGYAALKLLGEMNDSCVKADDITF-IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360 (471)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 360 (471)
-..+...|...-.+..+ +.||...- ..-..++.+.|+..++-.+++.+-+ ..|.+.++... .+.+.|+. +
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY--~~ar~gdt--a 311 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLY--VRARSGDT--A 311 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHH--HHhcCCCc--H
Confidence 12345556655555444 46665433 3345778999999999999999987 34665554333 23445543 3
Q ss_pred HHHHHhC----CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHh
Q 012108 361 IELIEAM----PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC-GQWEEANRWRNMM 434 (471)
Q Consensus 361 ~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m 434 (471)
..-+++. ..+| +......+..+....|++..|..--+......|. ...|..|.+.-... |+-.++...+-+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr--es~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR--ESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch--hhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3222222 2344 4567777888888999999999988888888776 88888888887765 9999999998887
Q ss_pred hhC
Q 012108 435 NDT 437 (471)
Q Consensus 435 ~~~ 437 (471)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 654
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.054 Score=48.73 Aligned_cols=163 Identities=14% Similarity=0.017 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHH
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQVK-------DVFCWNAMILGLAL---HGYGYAALKLLGEMNDSCVKADDITF 308 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~ 308 (471)
+.+...++-+|....+++..+++++.+... ....-...+-++.+ .|+.++|++++..+....-.+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344445666788888888888888877763 12222334455666 78888888888886555566777788
Q ss_pred HHHHHHHhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCH-H---HHHHHH---Hh-C----
Q 012108 309 IGLLSACSH---------AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL-D---RAIELI---EA-M---- 367 (471)
Q Consensus 309 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~---~A~~~~---~~-~---- 367 (471)
..+.+.|-. ....+.|...|.+.-+ ..|+...--.++..+...|.. + +..++- .. +
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 777776642 1235566666665544 234433222222233333321 1 111111 11 0
Q ss_pred --CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 368 --PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 368 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
.-..+-..+..++.++.-.|+.++|.+..+++.+..|
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 1122334445555666666666666666666665543
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.21 E-value=0.039 Score=49.58 Aligned_cols=167 Identities=12% Similarity=0.033 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhcCCCCChhHH
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDSC---VKADDITFIGLLSACSH---AGLVQEGCELFSRMEKDFGVTRKLEHY 344 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (471)
.+...++-+|....+++..+++++.+.... +.-+...-....-++.+ .|+.++|++++..+.. ....+++.++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHH
Confidence 334456666888888888888888887641 11122222334455566 7888888888888555 3566777888
Q ss_pred HHHHHHHhh---------cCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCC-ch---HHHHHH----HHHHHcC---
Q 012108 345 GCMVDLLGR---------ARLLDRAIELIEAM-PFEPTESILGALLSACVIHQD-LE---IGDRVA----KMVCAKS--- 403 (471)
Q Consensus 345 ~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~a~~~~----~~~~~~~--- 403 (471)
..+...|.. ...+++|...|.+. .+.|+...--+++..+...|. .+ +..++- ....+.+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 877777632 23467788888776 555665443333333333332 11 222222 1111222
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 404 NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
+..+-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33356666678888888888888888888887664
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=97.21 E-value=0.0029 Score=48.96 Aligned_cols=85 Identities=7% Similarity=-0.031 Sum_probs=46.5
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHH
Q 012108 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIG 392 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a 392 (471)
+...|++++|..+|+-+.. -.+-++..+..|..++-..+++++|...|... -...|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 4456666666666666654 22234445555666666666666666666544 1112333333345556666666666
Q ss_pred HHHHHHHHH
Q 012108 393 DRVAKMVCA 401 (471)
Q Consensus 393 ~~~~~~~~~ 401 (471)
...|+.+++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666555
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.15 E-value=0.023 Score=47.23 Aligned_cols=165 Identities=13% Similarity=0.049 Sum_probs=87.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhccc--c----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHH
Q 012108 142 NSLILAYTNAGEMEKAGEMFKKMLV--K----NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL--TVTSVLSA 213 (471)
Q Consensus 142 ~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~ 213 (471)
-.....+...|++++|.+.|+.+.. | ...+.-.++.++.+.|+++.|...+++.++. -|+.. .+...+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHH
Confidence 3445566777888888888888733 1 2234556677788888888888888887664 23321 12222222
Q ss_pred HHc-------------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHH
Q 012108 214 CAN-------------LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280 (471)
Q Consensus 214 ~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 280 (471)
.+. .+...+|...|+.+++. |=......+|...+..+...=...--.+...|
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----------------TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHH---------------CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11223444445544443 22223333333333222111111112356678
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHH
Q 012108 281 ALHGYGYAALKLLGEMNDSCVKADD----ITFIGLLSACSHAGLVQEGC 325 (471)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~ 325 (471)
.+.|.+..|..-++.+++. -|+. .....++.++.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8899999999999998876 3332 34566778888888877443
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.13 E-value=0.0018 Score=50.74 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh-----hCCCcccCcc
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN-----DTGIVKTAGS 445 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 445 (471)
+...++..+...|++++|..+++.++..+|. +...|..++.+|...|+..+|.+.|+++. +.|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455677778899999999999999999999 99999999999999999999999998874 3577766543
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.12 E-value=0.0025 Score=57.86 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=59.1
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHH
Q 012108 339 RKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTE----SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413 (471)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 413 (471)
.+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++..+. .|..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~----~f~~ 148 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL----KFST 148 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch----hHHH
Confidence 34666777777777777777777777774 555653 24777777777777777777777777775311 1211
Q ss_pred HHH--HHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 414 FAN--LYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 414 l~~--~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
+.. .+....+..+..++++.+.+.|..
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 111 111222334566666666666554
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.11 E-value=0.0057 Score=54.16 Aligned_cols=128 Identities=11% Similarity=-0.000 Sum_probs=75.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHH----HHcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CC--Chh
Q 012108 206 TVTSVLSACANLGSLETGARIHVYA----TDNGLA-SNPHATTALIDMYAKCGSIEQSLEVFYKSQ-------VK--DVF 271 (471)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~--~~~ 271 (471)
.|..|.+.|.-.|+++.|+...+.- ++.|-. .....+..+..+++-.|+++.|.+.|+... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555556667777776655442 233311 123456667777777777777777775422 12 223
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMND----S-CVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
.+.+|...|.-..++++|+.++.+-.+ . ...-....+.+|..++...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455566666666677777776654321 1 1122445677788888888888887776655544
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.07 E-value=0.0012 Score=39.01 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHH
Q 012108 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416 (471)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 416 (471)
.++..+..+|...|++++|+++++++++..|+ |+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 35667788888888888888888888888888 8887777654
No 216
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.05 E-value=0.0089 Score=48.48 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=54.2
Q ss_pred CChhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----------------CcHHHHHH
Q 012108 268 KDVFCWNAMILGLAL-----HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA----------------GLVQEGCE 326 (471)
Q Consensus 268 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~~ 326 (471)
.+..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 345555555555543 456666667777777778777888888777766531 12344566
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHhhcC
Q 012108 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355 (471)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (471)
++++|.. +|+-||..++..+++.+++.+
T Consensus 125 lL~qME~-~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMEN-NGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence 6666666 566666666666666665544
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.038 Score=47.33 Aligned_cols=102 Identities=14% Similarity=0.042 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc---CCHHHHHHHHHhC-CCCC-CHhHH
Q 012108 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA---RLLDRAIELIEAM-PFEP-TESIL 376 (471)
Q Consensus 302 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~p-~~~~~ 376 (471)
+-|...|..|...|...|+++.|..-|.+..+ -.++++..+..+..++... ....++..+|+++ ...| ++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 55778899999999999999999999999987 4456667777777665433 2456788888888 4444 56677
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 377 GALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
..|...+...|++.+|...|+.|++..|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 77788889999999999999999998876
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.99 E-value=0.0015 Score=44.60 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHc----CCC-C-CchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 374 SILGALLSACVIHQDLEIGDRVAKMVCAK----SNY-L-SDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
.+++.+...|...|++++|+..++++++. ++. | ...++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888888888888888888754 222 1 145677888889999999999998887754
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.014 Score=51.84 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
..+++.|..+|.+.+++.+|++...+. . .++++..+---..++...|+++.|+..|+++++..|. |..+-..|+.+-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 346778888999999999999998877 3 3457777777889999999999999999999999999 988888898888
Q ss_pred HhcCCHHH-HHHHHHHhhhC
Q 012108 419 ASCGQWEE-ANRWRNMMNDT 437 (471)
Q Consensus 419 ~~~g~~~~-A~~~~~~m~~~ 437 (471)
.+.....+ ..++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 77766555 47888888654
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.97 E-value=0.18 Score=47.81 Aligned_cols=267 Identities=15% Similarity=0.168 Sum_probs=145.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHhcc-----------ccChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHH
Q 012108 139 VSWNSLILAYTNAGEMEKAGEMFKKML-----------VKNVITWNTMVTGYLRSQL--YIEVVDLFDEMKAGNVKPDYL 205 (471)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 205 (471)
..+.+=+..|...|.+++|.++----+ .-+...++..=.+|.+..+ +-+...-++++++.|-.|+..
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 345555566778888887765421111 1122334444556666554 334455567778888778776
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHH----HH
Q 012108 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILG----LA 281 (471)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~----~~ 281 (471)
.. ...|+-.|++.+|.++|.+ .|.. +.-++.|.....++.|.+++...... .-..|++- -.
T Consensus 637 Ll---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~---eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 637 LL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPK---EKKMLIRKRADWAR 701 (1081)
T ss_pred HH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHhh
Confidence 43 3456667888888887754 2211 12334444444455555544332211 11111110 00
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 012108 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361 (471)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (471)
..+++..|-+++ +..|- ..-.+..+..+|-.+.+.++-+++-. .+..+...+...+.+...+.-|-
T Consensus 702 ~~kePkaAAEmL---iSaGe------~~KAi~i~~d~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 702 NIKEPKAAAEML---ISAGE------HVKAIEICGDHGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred hcCCcHHHHHHh---hcccc------hhhhhhhhhcccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHH
Confidence 111122221111 11110 00112223344444444444444433 34555566666667778888999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC---------CchhHHHHHHHHHhcCCHHHHHHHHH
Q 012108 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL---------SDGELMMFANLYASCGQWEEANRWRN 432 (471)
Q Consensus 362 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (471)
++|.+|+.. ..+.......+++.+|..+.++..+.-++. ...-|...-.+|.+.|+-.+|..+++
T Consensus 768 eIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 768 EIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred HHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 999999632 345667788999999999988766655441 11223345568899999999999999
Q ss_pred HhhhCCCc
Q 012108 433 MMNDTGIV 440 (471)
Q Consensus 433 ~m~~~~~~ 440 (471)
++....+.
T Consensus 842 QLtnnav~ 849 (1081)
T KOG1538|consen 842 QLTNNAVA 849 (1081)
T ss_pred Hhhhhhhh
Confidence 98665444
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.97 E-value=0.00085 Score=36.95 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=30.0
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 012108 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEAN 428 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 428 (471)
++++++.+|+ ++..|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 6788999999 9999999999999999999986
No 222
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.97 E-value=0.018 Score=49.72 Aligned_cols=98 Identities=10% Similarity=-0.013 Sum_probs=60.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHhHHHHHHH
Q 012108 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP----TESILGALLS 381 (471)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~ 381 (471)
|...+....+.|++++|...|+.+.+.+...+ .+..+-.+..+|...|++++|...|+.+ ...| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44434334555777777777777776321111 1245556667777777777777777766 1112 2334444566
Q ss_pred HHhhcCCchHHHHHHHHHHHcCCC
Q 012108 382 ACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.+...|+.++|..+++++++..|.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC
Confidence 677788888888888888888776
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.52 Score=46.35 Aligned_cols=51 Identities=14% Similarity=0.030 Sum_probs=34.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHH
Q 012108 346 CMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK 397 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 397 (471)
-++..+.+..+++.+..+.+..+- -++..|..+++.+.+.+..+.-.+...
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~ 760 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVY 760 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHH
Confidence 456667777788888888887762 377788888888877775554443333
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.88 E-value=0.005 Score=41.35 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=40.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 349 DLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
..|.+.+++++|.++++.+ ...| ++..+......+...|++++|.+.|+++.+.+|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4566777777777777776 3333 4556666777777888888888888888877776
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.88 E-value=0.02 Score=42.99 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 012108 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352 (471)
Q Consensus 300 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 352 (471)
...|+..+..+++.+|+..|++..|.++.+.+.+.++++-+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788888899999998889999999999998888887778888888877543
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.85 E-value=0.36 Score=43.95 Aligned_cols=404 Identities=10% Similarity=0.050 Sum_probs=219.8
Q ss_pred hhccchhHHHHHHHHHHHhccCCc------hhHHHHHHHHHhccCCHhHHHHHhcccCCC-CcccHHHHHHH--HHcCCC
Q 012108 21 GILSSSCIGLMLHGQTIKTGFCGH------VYVQTALLKMYGSLRCIDDAFKVFEKMPEK-DIIAWNSMLDA--FASCGQ 91 (471)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~ 91 (471)
-+++++.+|..+|.++-+.. ..+ ....+.++++|.. ++++.....+....+. ....|-.+..+ +-+.+.
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 36789999999999987653 222 2334566777764 5566655555554431 24456656555 356788
Q ss_pred HHHHHHHHhcCCCC------------------ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhhHHHHH
Q 012108 92 MDHAMKLIDLMPLK------------------DVTSFNIMISGYARIGKIHSARYIFDKVPA--------KDVVSWNSLI 145 (471)
Q Consensus 92 ~~~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~ 145 (471)
+.+|++.+...... |...=+..+.++...|++.++..+++++.+ -+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888876544321 222334567788999999999999988833 3667777755
Q ss_pred HHHHhC--------CC-------HHHHHHHHHhccccCh----------HHHHHHHHHHHhc--CCHHHHHHHHHHHHhC
Q 012108 146 LAYTNA--------GE-------MEKAGEMFKKMLVKNV----------ITWNTMVTGYLRS--QLYIEVVDLFDEMKAG 198 (471)
Q Consensus 146 ~~~~~~--------~~-------~~~A~~~~~~~~~~~~----------~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~ 198 (471)
-.++++ .. ++.+.-..+++..-+. .....++....-. .+..--.++++.....
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 444432 11 1222222222211111 1122222222211 1122222333333333
Q ss_pred CCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh
Q 012108 199 NVKPDYLTV-TSVLSACANLGSLETGARIHVYATDNGLAS----NPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVF 271 (471)
Q Consensus 199 g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 271 (471)
-+.|+.... ..+...+.+ +.+++..+.+.+....+.+ -..+|..++....+.++...|.+.+.-+.. |+..
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcch
Confidence 445554322 233333333 5555555555544332211 235677777777888888887776653322 2211
Q ss_pred -------hHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHH---HHhccCc-HHHHHHHHHHhHHhc
Q 012108 272 -------CWNAMILGLAL----HGYGYAALKLLGEMNDSCVKADD-ITFIGLLS---ACSHAGL-VQEGCELFSRMEKDF 335 (471)
Q Consensus 272 -------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~---~~~~~~~-~~~a~~~~~~~~~~~ 335 (471)
+-..+-+..+. ..+..+-+.+|++.....+ |. .....++. -+-+.|. -++|+.+++.+.+
T Consensus 333 vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~-- 408 (549)
T PF07079_consen 333 VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ-- 408 (549)
T ss_pred hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--
Confidence 11112222221 1223344555666555432 22 22223332 2344455 8889999998887
Q ss_pred CCCCChhHHHHHHH----HHhhc---CCHH---HHHHHHHhCCCCC----CHhHHHHHHHH--HhhcCCchHHHHHHHHH
Q 012108 336 GVTRKLEHYGCMVD----LLGRA---RLLD---RAIELIEAMPFEP----TESILGALLSA--CVIHQDLEIGDRVAKMV 399 (471)
Q Consensus 336 ~~~~~~~~~~~l~~----~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~ 399 (471)
-.+-|..+-|.+.. .|.+. ..+. +-....++.+++| +...-|.|..+ +..+|++.++.-.-...
T Consensus 409 ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 409 FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22334444433322 23222 1112 2233344456555 33455666665 45789999998887777
Q ss_pred HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 400 CAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
.+..| ++.+|..++-++....++++|++++..+
T Consensus 489 ~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 77766 6999999999999999999999999987
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.81 E-value=0.041 Score=42.95 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-----HcCCCCchhHHH
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYAT-----DNGLASNPHATT 243 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 243 (471)
+...++..+...|++++|..+++.+.... +.+...|..++.++...|+...|.+.|+.+. +.|++|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34456666777788888888888877653 4566777788888888888888888777764 357777766544
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.71 E-value=0.15 Score=37.77 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=85.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 012108 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359 (471)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 359 (471)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+- -|. ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDi----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------hhhcchHH
Confidence 34467788888888887753 24455666655545445555556666666552 111 23444444
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 360 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
....+-.++ .+.......+......|.-+.-.+++..+.+ +-.++|.....++.+|.+.|+..++.+++.+.-+.|+
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 444444443 3444556667778889999998888888876 3344799999999999999999999999999988887
Q ss_pred c
Q 012108 440 V 440 (471)
Q Consensus 440 ~ 440 (471)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.60 E-value=0.0097 Score=40.54 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 012108 172 WNTMVTGYLRSQLYIEVVDLFDE 194 (471)
Q Consensus 172 ~~~l~~~~~~~~~~~~a~~~~~~ 194 (471)
++.+..++...|++++|++.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444444444444444
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.60 E-value=0.55 Score=42.80 Aligned_cols=47 Identities=4% Similarity=-0.096 Sum_probs=26.0
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHH
Q 012108 352 GRARLLDRAIELIEAM-PFEPTESILGALLSACVIHQDLEIGDRVAKM 398 (471)
Q Consensus 352 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (471)
...|++.++.-.-.-+ .+.|++.+|..+.-+.....++++|..++..
T Consensus 473 ysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3456666555444433 4455666666555555556666666655544
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=96.54 E-value=0.15 Score=39.74 Aligned_cols=86 Identities=8% Similarity=0.051 Sum_probs=65.1
Q ss_pred HHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 012108 350 LLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427 (471)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 427 (471)
-+-..|++++|..+|+-+ .. .-+..-|..|..++...+++++|+..+..+...+++ |+..+...+.+|...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 345678888888888876 22 234555667777777788888888888888888777 888888888888888888888
Q ss_pred HHHHHHhhh
Q 012108 428 NRWRNMMND 436 (471)
Q Consensus 428 ~~~~~~m~~ 436 (471)
+..|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877765
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.45 E-value=0.1 Score=45.81 Aligned_cols=165 Identities=13% Similarity=0.022 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----Chh
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDS-CVKAD---DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR----KLE 342 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 342 (471)
..|..+.+++-+..++.+++.+-..-... |..|. -....++..+....+.++++++.|+.+.+-..-.. ...
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555555665555666666555443322 22221 12233456667777788888888887766222111 245
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHh-----HHHHHHHHHhhcCCchHHHHHHHHHHHcC----CC-
Q 012108 343 HYGCMVDLLGRARLLDRAIELIEAM-------PFEPTES-----ILGALLSACVIHQDLEIGDRVAKMVCAKS----NY- 405 (471)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~- 405 (471)
.+-.|...|.+..++++|.-+..+. ++..-.. ....+.-++...|....|.+..++..+.. ..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6777778888888888776555443 2221111 23334456777888888888777766542 11
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 406 LSDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
........+++.|...|+.+.|+.-|++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122344467888888888888887776653
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.015 Score=51.72 Aligned_cols=69 Identities=7% Similarity=-0.090 Sum_probs=63.1
Q ss_pred HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
...+..+..++.+.+++..|++...++++.+|. |+..+..-+.+|...|+++.|+..|+++.+..|..-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 346778888999999999999999999999999 999999999999999999999999999998877653
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.39 E-value=0.21 Score=46.80 Aligned_cols=131 Identities=14% Similarity=0.137 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHH
Q 012108 108 TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187 (471)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (471)
.-.+.++.-+.+.|..+.|+++-. |+. .-.+...+.|+++.|.++.++.. +...|..|.....++|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~-----D~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT-----DPD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC-----ChH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHH
Confidence 335555555555555555555432 221 22234455666666666555443 44466666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 012108 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263 (471)
Q Consensus 188 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 263 (471)
|.+.|.+... +..|+-.|.-.|+.+...++.+.....| . ++....++.-.|+.++..+++.
T Consensus 366 Ae~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 366 AEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 6666655332 3344444555566666555555555544 1 2333333344455555555543
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.39 E-value=0.46 Score=44.58 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=75.4
Q ss_pred HhhccchhHHHHHHH--HHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHH
Q 012108 20 AGILSSSCIGLMLHG--QTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMK 97 (471)
Q Consensus 20 ~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 97 (471)
..-+|+++.+.++.+ .+. ..+ +....+.++..+.+.|-.+.|+.+-+.- ..-.....+.|+++.|.+
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHH
T ss_pred HHHcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHH
Confidence 334566666555543 111 111 1334566666666777777777664431 233455566777777777
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHH
Q 012108 98 LIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVT 177 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 177 (471)
+.++.. ++..|..+.+...+.|+++-|++.|.+.. -+..|+-.|.-.|+.+.-.++.+.....+ -+|....
T Consensus 340 ~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~ 410 (443)
T PF04053_consen 340 IAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQ 410 (443)
T ss_dssp HCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHH
T ss_pred HHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHH
Confidence 666555 55566666666666666666666666553 24445555555666555444444432221 1333334
Q ss_pred HHHhcCCHHHHHHHHH
Q 012108 178 GYLRSQLYIEVVDLFD 193 (471)
Q Consensus 178 ~~~~~~~~~~a~~~~~ 193 (471)
++.-.|+.++..+++.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4444555555555443
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.26 E-value=0.037 Score=50.56 Aligned_cols=63 Identities=10% Similarity=-0.020 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-L---EHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 302 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
+.+...++.+..+|...|++++|+..|++..+ ..|+ . .+|..+..+|.+.|+.++|.+.+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567888899999999999999999999887 3454 3 35888999999999999999999887
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.21 E-value=0.37 Score=45.86 Aligned_cols=114 Identities=18% Similarity=0.044 Sum_probs=59.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhCCC------CCCHhHHHHHHHHHhhcCCchH
Q 012108 319 GLVQEGCELFSRMEKDFGVTRKLEHYG-CMVDLLGRARLLDRAIELIEAMPF------EPTESILGALLSACVIHQDLEI 391 (471)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~ 391 (471)
.+.+.|.+++..+.+ .. |+...|. .-.+.+...|++++|.+.|++... +.....+--+.-.+....++++
T Consensus 247 ~~~~~a~~lL~~~~~--~y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK--RY-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHH--hC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 445556666666665 22 3333322 223344555666666666665410 1112223334445556677777
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHH-HHHHhcCCH-------HHHHHHHHHhhh
Q 012108 392 GDRVAKMVCAKSNYLSDGELMMFA-NLYASCGQW-------EEANRWRNMMND 436 (471)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~~ 436 (471)
|...|..+.+.+.. +...|..+. -++...|+. ++|.++|.++..
T Consensus 324 A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77777777766555 444444332 334455666 666666666543
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.61 Score=38.84 Aligned_cols=50 Identities=20% Similarity=0.078 Sum_probs=24.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC---C---CCCCHhHHHHHHHHHhhcCCchHHHHHH
Q 012108 346 CMVDLLGRARLLDRAIELIEAM---P---FEPTESILGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~---~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (471)
..|-.|....++..|...++.- + -+.+..+...|+.+| ..||.+++..++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3333444445556666665552 1 112344555555554 445555554444
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=1.6 Score=43.14 Aligned_cols=175 Identities=7% Similarity=0.056 Sum_probs=100.4
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHHhccCCch--hHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcC
Q 012108 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHV--YVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASC 89 (471)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 89 (471)
....-|..+.+...++-|..+... .+..++. .........+-+.|++++|..-|-+...--. -..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCH
Confidence 344455555566666666655432 2222221 2233334445577899998877766442110 13345556666
Q ss_pred CCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHhcc
Q 012108 90 GQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPAKDV-VSWNSLILAYTNAGEMEKAGEMFKKML 165 (471)
Q Consensus 90 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 165 (471)
.+...-..+++.+.+. +..--..++.+|.+.++.++-.+..+...+-.. .-....+..+.+.+-.++|.-+-.+..
T Consensus 411 q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 6666666666666544 444566788888888888887777776652111 124455666666777777766655543
Q ss_pred ccChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012108 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEM 195 (471)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 195 (471)
. +....+.++ -..+++++|++.+..+
T Consensus 491 ~-he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred c-CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 3 333333333 3467788888877665
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.73 Score=39.66 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=69.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHH---HHHHHhhcCCchH
Q 012108 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA---LLSACVIHQDLEI 391 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~ 391 (471)
....|++.+|...|+.... -.+-+...-..+..+|...|+.+.|..++..++..-...-+.. -+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556777777777777766 2333455556667777777777777777777753333322222 2233333334333
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
... ++.-...+|. |...-..++..|...|+.+.|.+.+-.+.+.
T Consensus 222 ~~~-l~~~~aadPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQD-LQRRLAADPD-DVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHH-HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333 2333345666 6777777777777777777777766655544
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.09 E-value=0.14 Score=38.46 Aligned_cols=47 Identities=9% Similarity=-0.058 Sum_probs=26.4
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 012108 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAG-NVKPDYLTVTSVLSA 213 (471)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~ 213 (471)
|+..+..+++.+|+.+|++..|+++++...+. +++-+..+|..|+.-
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45555566666666666666666666655432 455555555555553
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=96.06 E-value=0.17 Score=46.45 Aligned_cols=118 Identities=11% Similarity=-0.003 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc
Q 012108 286 GYAALKLLGEMNDS-CVKADD-ITFIGLLSACSHA---------GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354 (471)
Q Consensus 286 ~~~a~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (471)
.+.|+.+|.+.... .+.|+. ..|..+..++... ....+|.+.-++..+ -.+.|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 45566677776621 234443 3444444433211 123344455555554 2334555555555555666
Q ss_pred CCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 355 RLLDRAIELIEAM-PFEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 355 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
++++.|...|++. .+.|+ ..+|......+.-.|+.++|.+.+++..+..|.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 6677777777666 34443 334444444455567777777777776666665
No 243
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=1.8 Score=42.53 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=66.1
Q ss_pred HHHHhhccchhHHHHHHHHHHHhccCC---chhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHH
Q 012108 17 LKAAGILSSSCIGLMLHGQTIKTGFCG---HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMD 93 (471)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 93 (471)
++.+...+.+++|+.+.+..... .| ....+..++..+.-.|++++|-...-.|...+..-|..-+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 34555666777777766554322 23 23456677777777788888888877777777777777777777777766
Q ss_pred HHHHHHhcCCCC-ChhhHHHHHHHHHh
Q 012108 94 HAMKLIDLMPLK-DVTSFNIMISGYAR 119 (471)
Q Consensus 94 ~A~~~~~~~~~~-~~~~~~~l~~~~~~ 119 (471)
....++-.-... ++..|..++..|..
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 555444333322 66677777777766
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.063 Score=45.42 Aligned_cols=58 Identities=14% Similarity=0.015 Sum_probs=26.4
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNYL--SDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
|..++...|++++|..+|..+.+..|+- -++.+..|+.+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444444555444444444443320 123444444444455555555555544443
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.91 E-value=0.57 Score=36.15 Aligned_cols=88 Identities=8% Similarity=0.041 Sum_probs=57.0
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCC
Q 012108 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90 (471)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (471)
.....++..+...+.+......++.+.+.+ ..+...++.++..|++.+ .+.....++. ..+......+++.|.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 345667777777788888888888888776 357778888888887653 3344444442 223344445666666666
Q ss_pred CHHHHHHHHhcC
Q 012108 91 QMDHAMKLIDLM 102 (471)
Q Consensus 91 ~~~~A~~~~~~~ 102 (471)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666554
No 246
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.87 E-value=1.3 Score=39.79 Aligned_cols=119 Identities=14% Similarity=0.127 Sum_probs=67.1
Q ss_pred HHHHHHHHH--cCCCHHHHHHHHhcCC---CCChhhHHHHHHH--HHhcCCHHHHHHHHhhcCCCChhhHH----HHHHH
Q 012108 79 WNSMLDAFA--SCGQMDHAMKLIDLMP---LKDVTSFNIMISG--YARIGKIHSARYIFDKVPAKDVVSWN----SLILA 147 (471)
Q Consensus 79 ~~~li~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~----~l~~~ 147 (471)
|..|-.+++ -.|+-..|.++-.+.. ..|......++.+ -.-.|+.+.|.+-|+-|.. |+.+.. .|.--
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 444444433 3466666666554443 2255544444443 2345777777777777753 222221 22222
Q ss_pred HHhCCCHHHHHHHHHhcc--cc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012108 148 YTNAGEMEKAGEMFKKML--VK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAG 198 (471)
Q Consensus 148 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 198 (471)
..+.|+.+.|..+-+..- .| -...+...+...+..|+|+.|+++++.-+..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 345677777777666652 22 3456677777778888888888877765543
No 247
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.77 E-value=2.4 Score=42.20 Aligned_cols=114 Identities=4% Similarity=-0.108 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 012108 283 HGYGYAALKLLGEMNDSC-VKADD--ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359 (471)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 359 (471)
..+.+.|..++....... ..+.. .....+.......+...++...+..... ...+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 344566666666654332 22221 1222232222332224455555554433 11233333334444446666666
Q ss_pred HHHHHHhCC--CCCCHhHHHHHHHHHhhcCCchHHHHHHHHH
Q 012108 360 AIELIEAMP--FEPTESILGALLSACVIHQDLEIGDRVAKMV 399 (471)
Q Consensus 360 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (471)
+...+..|+ .+-...-.-=+.+++...|+.++|...|+++
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666662 1112222233455555566777776666665
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.13 Score=43.58 Aligned_cols=86 Identities=16% Similarity=0.099 Sum_probs=42.8
Q ss_pred hcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHH
Q 012108 282 LHGYGYAALKLLGEMNDSCV--KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-LEHYGCMVDLLGRARLLD 358 (471)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 358 (471)
+.|++..|...|...++... .-....+..|..++...|++++|..+|..+.++++-.|. +...--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44556666666666655411 111233445566666666666666666666654333332 234444444444444444
Q ss_pred HHHHHHHhC
Q 012108 359 RAIELIEAM 367 (471)
Q Consensus 359 ~A~~~~~~~ 367 (471)
+|..+|++.
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 444444444
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.75 E-value=0.31 Score=37.13 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=27.5
Q ss_pred hcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 353 RARLLDRAIELIEAM----PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 353 ~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
+.|++++|.+.|+.+ +..| ....-..++.+|.+.+++++|...+++.++++|.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 445555555555544 1111 2233444555566666666666666666666655
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.70 E-value=0.25 Score=36.62 Aligned_cols=138 Identities=13% Similarity=0.190 Sum_probs=70.6
Q ss_pred HcCCCHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhCCCHHHHHHHHHhc
Q 012108 87 ASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKIHSARYIFDKVPA-KDVVSWNSLILAYTNAGEMEKAGEMFKKM 164 (471)
Q Consensus 87 ~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 164 (471)
.-.|.+++..+++.+...+ +..-+|+++--....-+-+...+.++.+-+ -|.. .+|++......+-.+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi~C~~~~ 82 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------KCGNLKRVIECYAKR 82 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------G-S-THHHHHHHHHT
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCch----------hhcchHHHHHHHHHh
Confidence 3456666666666555443 444555555555444444444444444411 1111 122222222222221
Q ss_pred cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 012108 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236 (471)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (471)
- .+....+.-+.....+|+-++-.+++.++.+.+ .++.....-+..+|.+.|+..++.+++.++.+.|++
T Consensus 83 n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 83 N-KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp T----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred c-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 1 122344556677778888888888888876533 567777777788888888888888888888888753
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.60 E-value=0.017 Score=34.05 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccC
Q 012108 408 DGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443 (471)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 443 (471)
+.++..++.+|.+.|++++|+++++++.+..+..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 457889999999999999999999999998776543
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.55 E-value=1.3 Score=37.47 Aligned_cols=218 Identities=17% Similarity=0.055 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCChHHHHH
Q 012108 183 QLYIEVVDLFDEMKAGNVKP-DYLTVTSVLSACANLGSLETGARIHVYATDN-GLASNPHATTALIDMYAKCGSIEQSLE 260 (471)
Q Consensus 183 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 260 (471)
+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444332110 2344444445555555555555555555432 123334444445555555555555555
Q ss_pred HHhcCCCC---ChhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 012108 261 VFYKSQVK---DVFCWNAMIL-GLALHGYGYAALKLLGEMNDSCVKA----DDITFIGLLSACSHAGLVQEGCELFSRME 332 (471)
Q Consensus 261 ~~~~~~~~---~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (471)
.+...... +......... .+...|+++.|...+.+.... .| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 55543331 1111222222 445555555555555555331 21 12222222233344455555555555554
Q ss_pred HhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 333 KDFGVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 333 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
. ..+. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..+
T Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 K--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred h--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4 2222 2344444444444444455555444444 22222 22222222222233344444444444444433
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.53 E-value=1.6 Score=41.60 Aligned_cols=159 Identities=15% Similarity=0.049 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhH
Q 012108 172 WNTMVTGYLRSQLYIEVVDLFDEMKAG-NVKPDY-----LTVTSVLSACAN----LGSLETGARIHVYATDNGLASNPHA 241 (471)
Q Consensus 172 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (471)
...++....-.|+-+.+++.+.+..+. |+.-.. -.|...+..++. ..+.+.+.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 334555555678888888887776543 222111 123333333332 34667788888888776 344444
Q ss_pred HH-HHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012108 242 TT-ALIDMYAKCGSIEQSLEVFYKSQVK-------DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313 (471)
Q Consensus 242 ~~-~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 313 (471)
|. .-.+.+...|++++|++.|++.... ....+--+.-.+.-..++++|...|..+.+.. ..+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 33 3446667788888888888864431 22344455666777888888888888888753 334444444443
Q ss_pred H-HhccCcH-------HHHHHHHHHhHH
Q 012108 314 A-CSHAGLV-------QEGCELFSRMEK 333 (471)
Q Consensus 314 ~-~~~~~~~-------~~a~~~~~~~~~ 333 (471)
+ +...|+. ++|.++|.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 3345666 777777776654
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.52 E-value=3.6 Score=42.59 Aligned_cols=53 Identities=6% Similarity=0.183 Sum_probs=29.8
Q ss_pred HHHHHHcCCCHHHHHHHHhcCCCC-------ChhhHHHHHHHHHhc-CCHHHHHHHHhhcC
Q 012108 82 MLDAFASCGQMDHAMKLIDLMPLK-------DVTSFNIMISGYARI-GKIHSARYIFDKVP 134 (471)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~ 134 (471)
-+.-++..+++.+|.++.++-+-. ++..|..-+.++.+. ++.+-...++..+.
T Consensus 683 ~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk 743 (1265)
T KOG1920|consen 683 KVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELK 743 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcc
Confidence 345566777788887776655422 455555555555543 44555555555554
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.21 Score=43.41 Aligned_cols=161 Identities=11% Similarity=-0.058 Sum_probs=118.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHhhcCC
Q 012108 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM----VDLLGRARL 356 (471)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~ 356 (471)
--.|++.+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...++..+|..+ .-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888998999998876 455666777777889999999999999999886 556666555444 334567899
Q ss_pred HHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCCHHHHHHHH
Q 012108 357 LDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY---LSDGELMMFANLYASCGQWEEANRWR 431 (471)
Q Consensus 357 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (471)
+++|++.-++. .+.| |...-.++...+-..|+++++.++..+-...-.. .-...|-..+-.+...+.++.|.++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999887 4444 6677788888888999999999887654332221 11234556667778889999999999
Q ss_pred HHhhhCCCcccCc
Q 012108 432 NMMNDTGIVKTAG 444 (471)
Q Consensus 432 ~~m~~~~~~~~~~ 444 (471)
++=.-.....+++
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765555555555
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=1.3 Score=37.04 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhc
Q 012108 109 SFNIMISGYARIGKIHSARYIFDKV 133 (471)
Q Consensus 109 ~~~~l~~~~~~~g~~~~a~~~~~~~ 133 (471)
.|.....+|....++++|...+.+.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444555555556666665555544
No 257
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.45 E-value=0.17 Score=42.85 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=61.9
Q ss_pred cChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----------------CChHHHHH
Q 012108 167 KNVITWNTMVTGYLR-----SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL----------------GSLETGAR 225 (471)
Q Consensus 167 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------------~~~~~a~~ 225 (471)
+|..+|-..+..+.. .+..+-....++.|.+-|+.-|..+|+.|++.+-+. .+-+-+.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344444444444332 244555555667777778878888888777766542 23456888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012108 226 IHVYATDNGLASNPHATTALIDMYAKCGSI 255 (471)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 255 (471)
++++|...|+-||-.+-..|++++.+.+..
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 999999999999999999999999887764
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.44 E-value=0.89 Score=35.08 Aligned_cols=129 Identities=10% Similarity=-0.024 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (471)
.....++..+...+.+......++.+...+ ..+....+.++..|++.+. ....+.++. . ++.......+..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~-----~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--K-----SNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c-----cccCCHHHHHHH
Confidence 334556777777778888888888888776 3566778888888876533 333333332 1 233334457777
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhc-CCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 012108 351 LGRARLLDRAIELIEAMPFEPTESILGALLSACVIH-QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420 (471)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (471)
|.+.+.++++..++.+++... ..+..+... ++++.|.+++++ .. ++..|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~-~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QN-NPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CC-CHHHHHHHHHHHHc
Confidence 788888888888888876321 222223333 778888877765 22 56677777766553
No 259
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.37 E-value=2.6 Score=40.09 Aligned_cols=332 Identities=8% Similarity=-0.020 Sum_probs=193.2
Q ss_pred hhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhc-cCCHhHHHHHhcccCC------CCcccHHHHHHHHHcCCCHH
Q 012108 21 GILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGS-LRCIDDAFKVFEKMPE------KDIIAWNSMLDAFASCGQMD 93 (471)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~ 93 (471)
.+.|..+.+..+|++.+.. ++.++..|...+..+.. .|+.+..+..|+.... .....|...|..-..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 4677888999999998864 67788888888777764 5788888888888664 35567888888888888999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHh---c------CCHHHHHHH-----------------------HhhcCCCCh---
Q 012108 94 HAMKLIDLMPLKDVTSFNIMISGYAR---I------GKIHSARYI-----------------------FDKVPAKDV--- 138 (471)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~l~~~~~~---~------g~~~~a~~~-----------------------~~~~~~~~~--- 138 (471)
....++++...-...-++..-.-|.+ . -..+++.++ .+....|..
T Consensus 169 ~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 169 RVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhh
Confidence 99999888764322222221111111 1 011111111 111111110
Q ss_pred hhHHHHH-------HHHHhCCCHHHHHHHHHhcc-------cc----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012108 139 VSWNSLI-------LAYTNAGEMEKAGEMFKKML-------VK----NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200 (471)
Q Consensus 139 ~~~~~l~-------~~~~~~~~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 200 (471)
...+.+. .++-......+....|+.-+ +| +...|+.-+.--...|+++.+.-+|++..-.-
T Consensus 249 ~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c- 327 (577)
T KOG1258|consen 249 EEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC- 327 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-
Confidence 0111111 12222223333333444331 11 45678888888889999999999888875311
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHH
Q 012108 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDV-FCWNAMI 277 (471)
Q Consensus 201 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~ 277 (471)
..=...|--.+.-....|+.+.|..++....+.-++..+.+.-.-....-..|+++.|..+++.+.. |+. ..-..-+
T Consensus 328 A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~ 407 (577)
T KOG1258|consen 328 ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKI 407 (577)
T ss_pred hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHH
Confidence 0011223333334444588888888888877766555554444444444557899999999887765 222 2222234
Q ss_pred HHHHhcCChHHHH---HHHHHHHhCCCCCCH--HHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 012108 278 LGLALHGYGYAAL---KLLGEMNDSCVKADD--ITFIGLLS-ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351 (471)
Q Consensus 278 ~~~~~~~~~~~a~---~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (471)
....+.|..+.+. .++.........+.. ..+....+ .+.-.++.+.|..++.++.+ .++++...|..++...
T Consensus 408 ~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 408 NWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFE 485 (577)
T ss_pred hHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHH
Confidence 4455677777776 333333322111111 11111221 12335788899999999988 7888888888888877
Q ss_pred hhcCC
Q 012108 352 GRARL 356 (471)
Q Consensus 352 ~~~g~ 356 (471)
...+.
T Consensus 486 ~~~~~ 490 (577)
T KOG1258|consen 486 LIQPS 490 (577)
T ss_pred HhCCc
Confidence 66553
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.55 Score=41.01 Aligned_cols=147 Identities=7% Similarity=-0.113 Sum_probs=104.0
Q ss_pred HhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhccCcHH
Q 012108 250 AKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITF----IGLLSACSHAGLVQ 322 (471)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~ 322 (471)
...|+..+|-..++++.+ .|..++..-=.++...|+.+.-...+++.... ..||...| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345777777777777665 36777887888999999999999999998765 23443333 33444556889999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC------CHhHHHHHHHHHhhcCCchHHHHHH
Q 012108 323 EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEP------TESILGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (471)
+|++.-++..+ -.+.|.-.-.++...+...|++.++.++..+-...- -...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999888876 344566666778888888999999999988763111 1122333334456779999999999
Q ss_pred HHH
Q 012108 397 KMV 399 (471)
Q Consensus 397 ~~~ 399 (471)
+.=
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 753
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.32 E-value=1.5 Score=37.03 Aligned_cols=60 Identities=10% Similarity=0.006 Sum_probs=45.0
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE---LMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
+.+-|.+.|.+..|..-++.+++.-++ ...+ +..+..+|...|-.++|.+.-+ ++..+.+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~-t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p 235 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPD-TSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYP 235 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCC
Confidence 456688999999999999999998666 4444 4456678999999999988654 4444443
No 262
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.32 E-value=0.075 Score=42.47 Aligned_cols=124 Identities=16% Similarity=0.080 Sum_probs=79.2
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHhh
Q 012108 313 SACSHAGLVQEGCELFSRMEKDFGVTRK-----LEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT-ESILGALLSACVI 385 (471)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 385 (471)
+-+...|++++|..-|..+.. .+++. ...|..-..++.+.+.++.|++-..+. .+.|+ ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 446778999999999998887 34443 334555556677888888888776665 45553 2344444567778
Q ss_pred cCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH--HHHHHHhhhCCC
Q 012108 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA--NRWRNMMNDTGI 439 (471)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~m~~~~~ 439 (471)
...+++|+.-++++.+..|. ....-...++.--......+. .+++.+++..|-
T Consensus 181 ~ek~eealeDyKki~E~dPs-~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN 235 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS-RREAREAIARLPPKINERNEKMKEEMMEKLKDLGN 235 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc-hHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88889999999999888887 444444444433222222222 245555655553
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.29 E-value=0.85 Score=34.78 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 279 GLALHGYGYAALKLLGEMNDSCV--KADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
...+.|++++|.+.|+.+..+=. +-....-..++.++.+.++++.|...+++..+
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33445555555555555554410 11223344455555555555555555555555
No 264
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=95.22 E-value=2.4 Score=38.75 Aligned_cols=109 Identities=9% Similarity=-0.025 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAMPFE--PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (471)
...|+.-|...|+..+|.+..++++.+ .....+.+++.+.-+.|+-.....+++.....+.- |-+.+-+.|.+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~RV 587 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhhh
Confidence 345778899999999999999998643 35678889999998999988888888877776644 445555555553
Q ss_pred C--------CHHHHHHHHHHhhhCCCcccCcceEEEEcCeEeEEe
Q 012108 422 G--------QWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFL 458 (471)
Q Consensus 422 g--------~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
. +...|.+.|+...+.+... +..|..+...|..+.
T Consensus 588 ~dsl~DlsLDvPna~ekf~~~Ve~~~~~--G~i~~~l~~~~~s~l 630 (645)
T KOG0403|consen 588 YDSLPDLSLDVPNAYEKFERYVEECFQN--GIISKQLRDLCPSRL 630 (645)
T ss_pred hccCcccccCCCcHHHHHHHHHHHHHHc--CchhHHhhhcchhhh
Confidence 2 2445666666665554432 567777777765443
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.16 E-value=1.7 Score=36.64 Aligned_cols=196 Identities=20% Similarity=0.088 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQ-----VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 313 (471)
..........+...+++..+...+.... ......+......+...+.+..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3445555555666666666655554432 1233444555555555556666666666655532222 111111222
Q ss_pred -HHhccCcHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHhhcC
Q 012108 314 -ACSHAGLVQEGCELFSRMEKDFGV--TRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT--ESILGALLSACVIHQ 387 (471)
Q Consensus 314 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g 387 (471)
.+...|+++.+...+.+... ... ......+......+...++.+.+...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 45566666666666666633 111 112333333333345556666666666555 22222 445555555555666
Q ss_pred CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
+++.|...+.......+. ....+..+...+...|.++++...+.+....
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666665554 3444444454444555566666655555443
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.09 E-value=0.18 Score=37.32 Aligned_cols=90 Identities=10% Similarity=-0.025 Sum_probs=54.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCC--CCHhHHHHHHHHHhhcC
Q 012108 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFE--PTESILGALLSACVIHQ 387 (471)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~--p~~~~~~~l~~~~~~~g 387 (471)
++...|+.+.|++.|.+... -.+..+..||.-.+++--.|+.++|++-+++. +-+ .--..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45566777777777777765 34445666777777777777777776666654 111 01123333444456667
Q ss_pred CchHHHHHHHHHHHcCCC
Q 012108 388 DLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~ 405 (471)
+-+.|..-|+.+-+.|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777776666644
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.08 E-value=0.13 Score=44.38 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHhhcCCchHHHHHHHHHH
Q 012108 343 HYGCMVDLLGRARLLDRAIELIEAM-PFE-PTESILGALLSACVIHQDLEIGDRVAKMVC 400 (471)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (471)
++..++..+...|+++.+.+.++++ ... -+...|..++.+|.+.|+...|+..++++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444444444555555555544444 112 244445555555555555555555544443
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.08 E-value=0.26 Score=43.39 Aligned_cols=211 Identities=12% Similarity=-0.002 Sum_probs=123.4
Q ss_pred HhhccchhHHHHHHHHHHHhc--cCCchhHHHHHHHHHhccCCHhHHHHHhccc----CC--C---CcccHHHHHHHHHc
Q 012108 20 AGILSSSCIGLMLHGQTIKTG--FCGHVYVQTALLKMYGSLRCIDDAFKVFEKM----PE--K---DIIAWNSMLDAFAS 88 (471)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~---~~~~~~~li~~~~~ 88 (471)
+....+.++|+..|.+-+.+- ......++..+..+.++.|.++++...--.- .+ . --.+|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667788888887766442 1223356777788888888888776442211 11 1 12345555555555
Q ss_pred CCCHHHHHHHHhcCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----ChhhHHHHHHHHHhC
Q 012108 89 CGQMDHAMKLIDLMPLK--------DVTSFNIMISGYARIGKIHSARYIFDKVPA-----K----DVVSWNSLILAYTNA 151 (471)
Q Consensus 89 ~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~ 151 (471)
.-++.+++.+-.+-... ......++..++.-.+.++++++.|+.... . ...++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554332211 123445577777777888888888888722 1 235788888889998
Q ss_pred CCHHHHHHHHHhc-------cccChH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH----HHHHHH
Q 012108 152 GEMEKAGEMFKKM-------LVKNVI------TWNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPDYLTV----TSVLSA 213 (471)
Q Consensus 152 ~~~~~A~~~~~~~-------~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~----~~l~~~ 213 (471)
.|+++|.-+..+. .-.|.. ....|..++...|....|.+..++..+..+ .-|..++ ..+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 8988887665554 112221 122344566677777777777666533211 1133333 345566
Q ss_pred HHccCChHHHHHHHHHH
Q 012108 214 CANLGSLETGARIHVYA 230 (471)
Q Consensus 214 ~~~~~~~~~a~~~~~~~ 230 (471)
|...|+.+.|+.-|+++
T Consensus 256 yR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHhcccHhHHHHHHHHH
Confidence 66777777777766664
No 269
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.96 E-value=0.51 Score=43.27 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=91.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHH
Q 012108 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIG 392 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a 392 (471)
-...|+.-.|-+-+........-.|+. .......+...|+++.+...+... .+.....+...+++...+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344577666655444444423333433 333334456678888888888766 2334556777788888888889999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCcceEEEEcCeEeEEee
Q 012108 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYHKFLA 459 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (471)
....+.|+..... ++......+..-...|-++++.-.|+++...+++.+.++ +-..+...-|..
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~--v~~~~~~~~~~~ 440 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW--VNFLSSTQYFND 440 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc--eeeeccceeccC
Confidence 8888888888777 777776666666677888889888888877766555544 333444444433
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.95 E-value=2.9 Score=38.26 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=54.5
Q ss_pred CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 371 PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL---SDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 371 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
....+|..++..+.+.|.++.|...+.++...++.. .+......++.+...|+..+|+..++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678888899999999999999999988765332 4667777888999999999999998888763
No 271
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.88 E-value=0.29 Score=36.21 Aligned_cols=88 Identities=18% Similarity=0.013 Sum_probs=51.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHhhcCC
Q 012108 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK--LEHYGCMVDLLGRARL 356 (471)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 356 (471)
++...|+.+.|++.|.+.... .+-....|+.-..++.-+|+.++|++=+++..+-.|-... ...|-.-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456667777777777776654 2345566777777777777777777777777663332211 1122222334555666
Q ss_pred HHHHHHHHHhC
Q 012108 357 LDRAIELIEAM 367 (471)
Q Consensus 357 ~~~A~~~~~~~ 367 (471)
-+.|..-|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 66666666544
No 272
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.86 E-value=0.016 Score=45.07 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=84.6
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHH
Q 012108 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMD 93 (471)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 93 (471)
..++..+...+.+....+.++.+...+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 456777778889999999999999877667789999999999999988999998884332 33455667777777777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCC
Q 012108 94 HAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGE 153 (471)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (471)
+|.-++.++...+.. +..+...++++.|.+...+. .++..|..+++.+...+.
T Consensus 88 ~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 88 EAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 777766665432110 11122334444444333333 346667777766665544
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.83 E-value=0.061 Score=29.96 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 410 ELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.67 E-value=0.95 Score=35.55 Aligned_cols=54 Identities=9% Similarity=0.056 Sum_probs=26.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 012108 179 YLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232 (471)
Q Consensus 179 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (471)
+..+|.++++....+-+-..+-+.....-..|.-+..+.|++.+|.+.|..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344555555555555444333222223333344444556666666666665544
No 275
>PRK09687 putative lyase; Provisional
Probab=94.67 E-value=2.8 Score=36.80 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=32.2
Q ss_pred CCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH----HHHHHHHhhc--CCCChhhHHHHHH
Q 012108 73 EKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI----HSARYIFDKV--PAKDVVSWNSLIL 146 (471)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~--~~~~~~~~~~l~~ 146 (471)
++|.......+.++...|..+-...+..-+..+|+..-...+.++.+.|+. +++...+..+ ..++..+....+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~ 113 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAIN 113 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 344444444444444444322222222222233444444555555555542 2344444433 2344444444444
Q ss_pred HHHh
Q 012108 147 AYTN 150 (471)
Q Consensus 147 ~~~~ 150 (471)
+++.
T Consensus 114 aLG~ 117 (280)
T PRK09687 114 ATGH 117 (280)
T ss_pred HHhc
Confidence 4433
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.60 E-value=2.5 Score=35.81 Aligned_cols=74 Identities=8% Similarity=-0.042 Sum_probs=41.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012108 177 TGYLRSQLYIEVVDLFDEMKAGNV--KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250 (471)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (471)
..-.+.|++++|.+.|+.+...-. +-...+...++.++.+.++.+.|....++...........-|...+.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 344566777777777777765411 11223444455566677777777777777665543333334444555444
No 277
>PRK11906 transcriptional regulator; Provisional
Probab=94.59 E-value=3 Score=38.72 Aligned_cols=140 Identities=15% Similarity=0.109 Sum_probs=94.6
Q ss_pred ChHHHHHHHhcCC---CCC---hhhHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 012108 254 SIEQSLEVFYKSQ---VKD---VFCWNAMILGLALH---------GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318 (471)
Q Consensus 254 ~~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 318 (471)
..+.|..+|.+.. +-| ...|..+..++... ....+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888888876 433 45666665554332 23446667777777764 45777888888877888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCHh---HHHHHHHHHhhcCCchHHH
Q 012108 319 GLVQEGCELFSRMEKDFGVTRK-LEHYGCMVDLLGRARLLDRAIELIEA-MPFEPTES---ILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~---~~~~l~~~~~~~g~~~~a~ 393 (471)
++++.|...|++... +.|| ...|........-.|+.++|.+.+++ +...|... .....+..|.. ...++|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 889999999999987 3454 55666666667778999999999998 46666533 33333445544 3567777
Q ss_pred HHHHH
Q 012108 394 RVAKM 398 (471)
Q Consensus 394 ~~~~~ 398 (471)
+++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77654
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.51 E-value=0.11 Score=28.41 Aligned_cols=30 Identities=13% Similarity=-0.134 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
+|..+..++...|++++|+..|+++++.+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344445555555555555555555555544
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=2.9 Score=36.14 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=82.1
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChHH
Q 012108 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKD----VFCWNAMILGLALHGYGYA 288 (471)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 288 (471)
.....|++..|...|....... +-+......+..+|...|+.+.|..++..+.... .....+-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456778888888888877764 4445666678888888888888888888776531 1122233444555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH-hcCCCCChhHHHHHHHHHhhcC
Q 012108 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK-DFGVTRKLEHYGCMVDLLGRAR 355 (471)
Q Consensus 289 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g 355 (471)
...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+ +.+. -|...-..|++.+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcC
Confidence 55544444432 22555566677777778888887765554444 2222 23334444444444333
No 280
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.40 E-value=0.12 Score=28.06 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 411 LMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
+..++.+|.+.|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.39 E-value=1.8 Score=40.34 Aligned_cols=60 Identities=7% Similarity=-0.063 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYL-SDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
..+..++.+.|+.++|++.++++.+..|.. +..+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334445555666666666666665554431 233445566666666666666666665533
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.34 E-value=1.2 Score=35.95 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH--H
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD--ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG--C 346 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ 346 (471)
..+..+...|++.|+.+.|.+.|.++.+....+.. ..+..+++.....+++..+...+.++........+...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34666777778888888888888887776444433 3456677777778888888887777766211111111111 1
Q ss_pred HHH--HHhhcCCHHHHHHHHHhC
Q 012108 347 MVD--LLGRARLLDRAIELIEAM 367 (471)
Q Consensus 347 l~~--~~~~~g~~~~A~~~~~~~ 367 (471)
... .+...+++.+|-+.|-+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 123467888888777666
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.21 E-value=0.62 Score=39.65 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=67.6
Q ss_pred HHHhcCC--CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-------------
Q 012108 260 EVFYKSQ--VKDVFCWNAMILGLAL-----HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG------------- 319 (471)
Q Consensus 260 ~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------- 319 (471)
..|..+. ++|-.+|...+..+.. .+..+-....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 3466667666666653 3556666677778888888888888888887665421
Q ss_pred ---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCH
Q 012108 320 ---LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLL 357 (471)
Q Consensus 320 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (471)
+-+-+++++++|.. +|+.||..+-..|+.++.+.+..
T Consensus 135 YP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23346788888887 78888888888888888877654
No 284
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.16 E-value=0.1 Score=28.43 Aligned_cols=32 Identities=9% Similarity=-0.209 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 374 SILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
..+..+...+...|++++|++.++++++..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45777889999999999999999999999886
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.14 E-value=5 Score=37.53 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=71.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH--HhcCChHH
Q 012108 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY--AKCGSIEQ 257 (471)
Q Consensus 180 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 257 (471)
-+..+++.-.+.-++.++ +.||..+.-+++ +--......++.+++++..+.|- . .+ .... ...|..-+
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-~---~l---g~s~~~~~~g~~~e 248 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-A---SL---GKSQFLQHHGHFWE 248 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-H---hh---chhhhhhcccchhh
Confidence 344455555555555544 345554433322 22234557788888888776541 0 00 0000 00111000
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 258 SLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 258 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
. ...+-..+-..+-..+..++.+.|+.++|++.+.+|.+..... .......|+.++...+.+.++..++.+-.+
T Consensus 249 ~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 249 A--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred h--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0 0111111112233445566667788888888888876542111 223556677888888888888888777643
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.11 E-value=1.1 Score=35.53 Aligned_cols=129 Identities=9% Similarity=0.023 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCC--CHHHHHHHHhcCCCCChh
Q 012108 31 MLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG--QMDHAMKLIDLMPLKDVT 108 (471)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~ 108 (471)
+....+.+.+++|+...+..++..+.+.|++..-..+++--.-+|.......+-.+.... -..-|++++.++. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 334444556666777777777777777777666666665433333322222221111110 1233444444443 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHh
Q 012108 109 SFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKK 163 (471)
Q Consensus 109 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 163 (471)
.+..++..+...|++-+|.++.+.....+......++++..+.+|...=..+|+-
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2445566666777777777776665444444445556666666655444444433
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.06 E-value=0.11 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 409 GELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
.+|..++.+|...|++++|+..+++..+.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999887653
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.97 E-value=4.1 Score=35.87 Aligned_cols=18 Identities=0% Similarity=-0.121 Sum_probs=11.5
Q ss_pred HhhcCCchHHHHHHHHHH
Q 012108 383 CVIHQDLEIGDRVAKMVC 400 (471)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~ 400 (471)
+.+.++++.|.+.++-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 446677777777776443
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=2.1 Score=34.48 Aligned_cols=88 Identities=8% Similarity=-0.031 Sum_probs=39.4
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHhHHHHHHHHHhhcC
Q 012108 313 SACSHAGLVQEGCELFSRMEKDFGVTRK----LEHYGCMVDLLGRARLLDRAIELIEAMPFE-PTESILGALLSACVIHQ 387 (471)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g 387 (471)
..+...+++++|...++..... +.| ...-..|.......|.+++|+.+++....+ -.......-...+...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 3445556666666555555431 111 111122333444555555555555544211 11222233334455555
Q ss_pred CchHHHHHHHHHHHcC
Q 012108 388 DLEIGDRVAKMVCAKS 403 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~ 403 (471)
+-++|..-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 5555555555555544
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.75 E-value=5.4 Score=36.50 Aligned_cols=148 Identities=10% Similarity=-0.091 Sum_probs=79.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhH
Q 012108 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA---DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK--LEH 343 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 343 (471)
...+|..++..+.+.|.++.|...+.++...+... ++.....-+...-..|+..+|...++...+. ....+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44677788888888888888888888877643211 2334444455666778888888888777761 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHhHHHHHHHHHhhc------CCchHHHHHHHHHHHcCCCCCchhHHHHHH
Q 012108 344 YGCMVDLLGRARLLDRAIELI-EAMPFEPTESILGALLSACVIH------QDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 416 (471)
...+...+.. ..+.....- .......-...+..+..-+... +..+++...|+.+.+..|. ....|..++.
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWAL 300 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHH
Confidence 1111111100 000000000 0000000112233333333333 7788888888888888887 6777777776
Q ss_pred HHHh
Q 012108 417 LYAS 420 (471)
Q Consensus 417 ~~~~ 420 (471)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6554
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.68 E-value=0.065 Score=29.86 Aligned_cols=28 Identities=18% Similarity=-0.035 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHc
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAK 402 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (471)
+|..|...|.+.|++++|++++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667888888888888888888885543
No 292
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.16 E-value=0.26 Score=42.98 Aligned_cols=93 Identities=11% Similarity=-0.107 Sum_probs=67.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHhHHHHHHHHHhhcCC
Q 012108 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP-F-EPTESILGALLSACVIHQD 388 (471)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~ 388 (471)
-.+-|.++|.+++|+..|..... -.+.++.++..-..+|.+..++..|+.-....- + ..-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45568889999999999988876 333488888888889999988888776665541 1 1223345555555556678
Q ss_pred chHHHHHHHHHHHcCCC
Q 012108 389 LEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 389 ~~~a~~~~~~~~~~~~~ 405 (471)
..+|.+-++.++++.|.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 88888888888888887
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.82 E-value=4 Score=32.35 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=51.9
Q ss_pred ccCCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHH
Q 012108 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSM 82 (471)
Q Consensus 3 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 82 (471)
+.|++|+...|..+++.+.+.|.+....++ +..++-+|.......+-.+. +....+.++=-+|.++-...+..+
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~~~~~i 95 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGTAYEEI 95 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhhhHHHH
Confidence 345666666666666666666655433333 23333333322222221111 122222222222222222244555
Q ss_pred HHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 012108 83 LDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI 123 (471)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 123 (471)
+..+...|++-+|+++.++....+......++.+..+.++.
T Consensus 96 ievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~ 136 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDD 136 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCH
Confidence 56666666666666666654433333334445555444443
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.81 E-value=14 Score=38.62 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 012108 242 TTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321 (471)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 321 (471)
|.-.++.-.+.|-+++|+.++.--.+.-...|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 333444444556666666655444333444555556666666667776666655432 12244566667777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHH
Q 012108 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398 (471)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (471)
.+|..+..++.. +-.--..+-..|+..+...+++-+|-++..+....|.. .+..+++...+++|.++...
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHh
Confidence 777777666654 11111222355666667777777777777666433321 12223444455555555443
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.77 E-value=12 Score=37.76 Aligned_cols=194 Identities=12% Similarity=0.022 Sum_probs=105.5
Q ss_pred HHHhcCChHHHHHHHhcCC----CCCh-------hhHHHHHH-HHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHH
Q 012108 248 MYAKCGSIEQSLEVFYKSQ----VKDV-------FCWNAMIL-GLALHGYGYAALKLLGEMNDS----CVKADDITFIGL 311 (471)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~----~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l 311 (471)
......++++|..++.+.. .++. ..|+++-. .....|+++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445678888887776533 2221 24554433 234578889998888877654 122344556666
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH---HHH--HHHhhcCCHHHH--HHHHHhC-----CCC----CCHhH
Q 012108 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG---CMV--DLLGRARLLDRA--IELIEAM-----PFE----PTESI 375 (471)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~--~~~~~~g~~~~A--~~~~~~~-----~~~----p~~~~ 375 (471)
..+..-.|++++|..+.+...+ ..-.-+...+. .+. ..+...|+...+ ...|... +-+ +-..+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 7777778999999888777766 22222333332 222 224455632222 2222222 111 22344
Q ss_pred HHHHHHHHhh-cCCchHHHHHHHHHHHcCCCCCchhHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 376 LGALLSACVI-HQDLEIGDRVAKMVCAKSNYLSDGELM--MFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 376 ~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
...+..++.+ .+...++..-++-.....+.|-...+. .|+.++...|+.++|...++++......+.
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 5555555544 222333333333333334443222333 678888889999999998888876554443
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.49 E-value=1.6 Score=35.26 Aligned_cols=94 Identities=7% Similarity=-0.076 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCC---CCC--CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCC-chhHH--
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAMP---FEP--TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS-DGELM-- 412 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-- 412 (471)
...+..+...|.+.|+.++|.+.|.++. ..+ -...+..++......+++..+.....++...-..+. ...-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3456666777777777777777777762 112 233556666777777777777777766654422211 11111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHh
Q 012108 413 --MFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 413 --~l~~~~~~~g~~~~A~~~~~~m 434 (471)
.-+-.+...|++..|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 1222344567888887777655
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.17 E-value=1.2 Score=34.02 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=56.9
Q ss_pred hhHHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHH
Q 012108 341 LEHYGCMVDLL---GRARLLDRAIELIEAM-PFEPT---ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMM 413 (471)
Q Consensus 341 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 413 (471)
....+.|++.. ...++++++..++..+ .+.|. ..++...+ +...|++.+|.++|+...+..+. .+..-..
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL 83 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA-PPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC-chHHHHH
Confidence 34455555544 4578999999999888 34454 44554444 67899999999999999888776 4555555
Q ss_pred HHHHHHhcCCHH
Q 012108 414 FANLYASCGQWE 425 (471)
Q Consensus 414 l~~~~~~~g~~~ 425 (471)
+..++.-.|+.+
T Consensus 84 ~A~CL~al~Dp~ 95 (153)
T TIGR02561 84 LALCLNAKGDAE 95 (153)
T ss_pred HHHHHHhcCChH
Confidence 666666777754
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.14 E-value=0.28 Score=26.84 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=19.2
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012108 228 VYATDNGLASNPHATTALIDMYAKCGSIEQSL 259 (471)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 259 (471)
++.++.. |.++..|..+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 556666777777777777776664
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.05 E-value=1.5 Score=34.20 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=65.4
Q ss_pred hhHHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCCHhHHHH-HHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHH
Q 012108 341 LEHYGCMVDLL---GRARLLDRAIELIEAM-PFEPTESILGA-LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415 (471)
Q Consensus 341 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (471)
..+.+.|+... .+.++.+++..++..+ ...|....... -...+...|++.+|.++|+.+.+..|. .+..-..++
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA 85 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHH
Confidence 34455565554 5778999999999988 34555433322 233367899999999999999888877 666666677
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 416 NLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
.++...|+.+- ..+-+++.+.+..+
T Consensus 86 ~CL~~~~D~~W-r~~A~evle~~~d~ 110 (160)
T PF09613_consen 86 LCLYALGDPSW-RRYADEVLESGADP 110 (160)
T ss_pred HHHHHcCChHH-HHHHHHHHhcCCCh
Confidence 77777777542 12224455555443
No 300
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.83 E-value=8.8 Score=34.02 Aligned_cols=136 Identities=9% Similarity=0.107 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cC----cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHhhcCCHH
Q 012108 287 YAALKLLGEMNDSCVKADDITFIGLLSACSH--AG----LVQEGCELFSRMEKDFGVTR--KLEHYGCMVDLLGRARLLD 358 (471)
Q Consensus 287 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 358 (471)
++.+.+++.|.+.|..-+..+|.+....... .. ...++..+|+.|++.+.+-. +-..+..++.. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556677888888877776666553322222 22 35567888888888554433 33344444332 334433
Q ss_pred ----HHHHHHHhC---CCCC--CHhHHHHHHHHHhhcCC--chHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 012108 359 ----RAIELIEAM---PFEP--TESILGALLSACVIHQD--LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424 (471)
Q Consensus 359 ----~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 424 (471)
.++.+|+.+ ++.. +......++..+-...+ ..++.++++.+.+.+.++....|..++-.-.-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 344444444 3333 22333333333222222 447788888888888886677776666554444433
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.79 E-value=8.6 Score=33.84 Aligned_cols=61 Identities=15% Similarity=-0.014 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 272 CWNAMILGLALHGYGY---AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
+...++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+.+.+++.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3444555555544433 3444555554431 11234444455555556777777777777776
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=16 Score=36.39 Aligned_cols=99 Identities=9% Similarity=0.141 Sum_probs=50.7
Q ss_pred HHHHhccCCHhHHHHHhcccCC--C---CcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 012108 52 LKMYGSLRCIDDAFKVFEKMPE--K---DIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSA 126 (471)
Q Consensus 52 ~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 126 (471)
++.+.+.+.+++|+...+.... + -...+...|..+...|++++|-...-.|...+..-|...+..++..++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3445555666666665554433 1 1234555566666666666666666666655555555555555555555443
Q ss_pred HHHHhhcCC-CChhhHHHHHHHHHh
Q 012108 127 RYIFDKVPA-KDVVSWNSLILAYTN 150 (471)
Q Consensus 127 ~~~~~~~~~-~~~~~~~~l~~~~~~ 150 (471)
..++-.-.+ .++.+|..++..+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 333322222 234455554444443
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.55 E-value=16 Score=36.44 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=20.3
Q ss_pred hhHHHHHHHH-----HhhcCCHHHHHHHHHhCCCCC
Q 012108 341 LEHYGCMVDL-----LGRARLLDRAIELIEAMPFEP 371 (471)
Q Consensus 341 ~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~p 371 (471)
..++..|++. +...|++++|++.++++++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 4445555443 357899999999999997666
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.48 E-value=0.29 Score=26.26 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 411 LMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
+..++.++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555666666666666666665543
No 305
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.43 E-value=3.2 Score=36.00 Aligned_cols=77 Identities=9% Similarity=0.087 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCchhHHHHH
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD-----NGLASNPHATTAL 245 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 245 (471)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555555555555555555442 33455555555555555555555555555433 4555655555544
Q ss_pred HHH
Q 012108 246 IDM 248 (471)
Q Consensus 246 ~~~ 248 (471)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.24 E-value=6 Score=30.98 Aligned_cols=87 Identities=17% Similarity=0.049 Sum_probs=41.6
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHhhcCCchHHH
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTRKL-EHYGCMVDLLGRARLLDRAIELIEAMP-FEPTESILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~ 393 (471)
.+.++.+.+..++..+.- ..|.. ..-..-...+...|++.+|..+|+++. -.|....-..|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 455566666666666654 23321 111122233456667777777776662 2233333344444444433333333
Q ss_pred HHHHHHHHcCCC
Q 012108 394 RVAKMVCAKSNY 405 (471)
Q Consensus 394 ~~~~~~~~~~~~ 405 (471)
..-+++.+.+++
T Consensus 98 ~~A~evle~~~d 109 (160)
T PF09613_consen 98 RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHhcCCC
Confidence 344455555544
No 307
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.22 E-value=0.29 Score=37.97 Aligned_cols=128 Identities=10% Similarity=-0.028 Sum_probs=82.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcC
Q 012108 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355 (471)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (471)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....+++... . .-...++..+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhcc
Confidence 455666677888888888888877656667888888999998877777766666111 1 22334667778888
Q ss_pred CHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 356 LLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 356 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
.+++|.-++.+++....... .+...++++.|.+.+.+ .. ++..|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~al~------i~~~~~~~~~a~e~~~~-----~~-~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALE------ILHKLKDYEEAIEYAKK-----VD-DPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSS------TSSSTHCSCCCTTTGGG-----CS-SSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHHHH------HHHHHccHHHHHHHHHh-----cC-cHHHHHHHHHHHHhcCc
Confidence 88888888888752222111 13355666666644332 22 57777777777766554
No 308
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.13 E-value=0.43 Score=24.14 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 012108 410 ELMMFANLYASCGQWEEANRWRN 432 (471)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~ 432 (471)
....++.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777888888777765
No 309
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.98 E-value=8.4 Score=32.20 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=11.9
Q ss_pred HHHccCChHHHHHHHHHH
Q 012108 213 ACANLGSLETGARIHVYA 230 (471)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~ 230 (471)
.+...+++++|.+++.+.
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 344556778888777664
No 310
>PRK09687 putative lyase; Provisional
Probab=90.76 E-value=11 Score=33.17 Aligned_cols=61 Identities=15% Similarity=-0.097 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 340 KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
+...-...+.++.+.|+.+..-.+.+.+. .++ .....+.++...|+. +|...+..+.+..+
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 44444444445555554332222223322 122 122344445555553 45555555554443
No 311
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.53 E-value=0.42 Score=25.93 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 410 ELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
+|..++..|...|++++|.+.|++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56667777777777777777777766543
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.34 E-value=0.59 Score=25.30 Aligned_cols=31 Identities=10% Similarity=-0.220 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
+|..+...+...|++++|...|++..+..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667778888888888998888888877663
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.26 E-value=16 Score=34.39 Aligned_cols=45 Identities=4% Similarity=-0.033 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
...+.-+-.-|....++.+|++++...++.+-+ |...-..++.-+
T Consensus 205 ~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 205 SVLMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 334444445556666677777777666666555 555555444443
No 314
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.10 E-value=40 Score=38.52 Aligned_cols=144 Identities=12% Similarity=0.126 Sum_probs=87.5
Q ss_pred HHHHHHHcCCCHHHHHHHHhcC----CCC--ChhhHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhhHHHHHHHHHhCCC
Q 012108 81 SMLDAFASCGQMDHAMKLIDLM----PLK--DVTSFNIMISGYARIGKIHSARYIFDK-VPAKDVVSWNSLILAYTNAGE 153 (471)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 153 (471)
.+..+-.+.+.+.+|+-.+++- .+. ....+..+...|+..+++|...-+... ...+ ..+. .+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--sl~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP--SLYQ-QILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc--cHHH-HHHHHHhhcc
Confidence 3445556778888888888873 222 223444455588888888877776663 2222 2222 3344667788
Q ss_pred HHHHHHHHHhcccc---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCChHHHHHHHH
Q 012108 154 MEKAGEMFKKMLVK---NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS-VLSACANLGSLETGARIHV 228 (471)
Q Consensus 154 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~ 228 (471)
+..|...|+.+.+. ....++.++......|.++.++...+-.... ..+....++. -+.+.-+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88899999888443 3456777777777788888777765554433 2333333332 2334456677776666544
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.05 E-value=0.64 Score=26.56 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 409 GELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888889999999999988888754
No 316
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.03 E-value=7.4 Score=31.65 Aligned_cols=93 Identities=13% Similarity=0.018 Sum_probs=59.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 012108 277 ILGLALHGYGYAALKLLGEMNDSCVKADD-----ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR-KLEHYGCMVDL 350 (471)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 350 (471)
..-+...|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|+.-..+..+ +.| .......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 34567788888888888888775 34332 2344444566777888888777777766 223 23333334556
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCH
Q 012108 351 LGRARLLDRAIELIEAM-PFEPTE 373 (471)
Q Consensus 351 ~~~~g~~~~A~~~~~~~-~~~p~~ 373 (471)
|.+..++++|++-|+.+ ...|..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcch
Confidence 77778888888877777 334443
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.00 E-value=2.8 Score=29.32 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012108 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349 (471)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (471)
+.-++.+-++.+....+.|++......+++|.+.+++..|..+|+-++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44567777777877888999999999999999999999999999988863333 4456666654
No 318
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.94 E-value=8.4 Score=30.54 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=21.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
..|.+++.....+.+-..+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444433332222222223333334444555555555554444
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.91 E-value=2.5 Score=29.94 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012108 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349 (471)
Q Consensus 286 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (471)
.-+..+-++.+....+.|++......+++|.+.+++..|..+|+-++.+.+ +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 336677777787888899999999999999999999999999999988544 33337777665
No 320
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.83 E-value=17 Score=34.02 Aligned_cols=103 Identities=12% Similarity=0.018 Sum_probs=63.7
Q ss_pred HHHHhcCChHHHHHHHhcCCC---C---------ChhhHHHHHHHHHhcCChHHHHHHHHHHH-------hCCCCCCH--
Q 012108 247 DMYAKCGSIEQSLEVFYKSQV---K---------DVFCWNAMILGLALHGYGYAALKLLGEMN-------DSCVKADD-- 305 (471)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~p~~-- 305 (471)
+.+.-.|++.+|.+++..... + .-..||.|...+.+.|.+..+..+|.+.. ..|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 344556777777777654321 1 12335666555556666666655555544 24544432
Q ss_pred ---------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 012108 306 ---------ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352 (471)
Q Consensus 306 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 352 (471)
.+|+ ..-.+...|++-.|.+.|.+... -+..++..|..|..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 1222 33356778999999999998887 56778888988888875
No 321
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.67 E-value=9.5 Score=33.83 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cC----ChHHHHHHHHHHHHcC
Q 012108 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN--LG----SLETGARIHVYATDNG 234 (471)
Q Consensus 185 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~ 234 (471)
+++.+.+++.|.+.|..-+..+|....-.... .. ....+..+|+.|++..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 34566788888888888777766553332222 22 2456778888887764
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.25 E-value=3.1 Score=36.27 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=67.9
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHhcc-cc------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012108 137 DVVSWNSLILAYTNAGEMEKAGEMFKKML-VK------NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS 209 (471)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 209 (471)
...+...++..-....+++.++..+-++. .| +... ..+++.+ ..-++++++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence 44445555555556677888887777762 22 1111 1223333 23467789988888889999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC
Q 012108 210 VLSACANLGSLETGARIHVYATDNG 234 (471)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (471)
+++.+.+.+++..|.++.-.|....
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999998887776554
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.10 E-value=11 Score=30.63 Aligned_cols=55 Identities=7% Similarity=-0.023 Sum_probs=25.5
Q ss_pred HHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
.....|.+++|...++.....+-. +.....-++++...|+-++|+.-|++....+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344455555555555443332221 2223334455555555555555555554444
No 324
>PRK10941 hypothetical protein; Provisional
Probab=88.98 E-value=2.3 Score=36.90 Aligned_cols=67 Identities=13% Similarity=0.017 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
..+.+-.+|.+.++++.|.++.+.++...|+ ++.-+.--+-.|.+.|.+..|..=++...+.-+..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 4455666778888888888888888888888 888888888888888888888887777766655444
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.83 E-value=11 Score=36.14 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=93.9
Q ss_pred HcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccc
Q 012108 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166 (471)
Q Consensus 87 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 166 (471)
.-.|+++.|-.++..+.++ ..+.++..+.+.|-.++|+++- +|+... .....+.|+++.|.++..+.
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-----~D~d~r---Felal~lgrl~iA~~la~e~-- 663 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-----TDPDQR---FELALKLGRLDIAFDLAVEA-- 663 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-----CChhhh---hhhhhhcCcHHHHHHHHHhh--
Confidence 4457777777766666532 3445666677777777776543 222211 23345678888887776553
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 012108 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246 (471)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 246 (471)
.+..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+....+-....+.| ..|. -.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF 728 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AF 728 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccch-----HH
Confidence 3556688888888888888888888776543 4455556666777666665655555555 2222 23
Q ss_pred HHHHhcCChHHHHHHHhcC
Q 012108 247 DMYAKCGSIEQSLEVFYKS 265 (471)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~ 265 (471)
.+|...|+++++.+++.+-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 3455567777777666543
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.64 E-value=28 Score=34.81 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=34.3
Q ss_pred hhcCCchHHHHHHHHHHHcCCC-C-------CchhHHHHHHHHHhcCCHHHHHHHHH
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNY-L-------SDGELMMFANLYASCGQWEEANRWRN 432 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~-~-------~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (471)
+-.+++..|...++.+.+.... | .+..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3568888899999888765322 1 23344455555667899999999997
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.53 E-value=27 Score=34.42 Aligned_cols=275 Identities=9% Similarity=0.053 Sum_probs=150.6
Q ss_pred HHHHHHHHHhcccc-ChHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccC--
Q 012108 154 MEKAGEMFKKMLVK-NVITWNTMVTG-----YLRSQLYIEVVDLFDEMKA-------GNVKPDYLTVTSVLSACANLG-- 218 (471)
Q Consensus 154 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~~-- 218 (471)
...|.++++...+. +...-..+..+ +....+.+.|+.+|+.+.+ .|. ......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCC
Confidence 45677777776433 33333333322 3455788888888888766 442 224445555565532
Q ss_pred ---ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCCC-ChhhHHHHHHHHHh----cCChHHH
Q 012108 219 ---SLETGARIHVYATDNGLASNPHATTALIDMYAK-CGSIEQSLEVFYKSQVK-DVFCWNAMILGLAL----HGYGYAA 289 (471)
Q Consensus 219 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a 289 (471)
+.+.|..++...-+.| .|+....-..+..... ..+...|.++|...... .+.++-.+...|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888888888887 4555444333332222 24567888888776553 33343333333332 3467888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH---hh----cCCHHHHHH
Q 012108 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL---GR----ARLLDRAIE 362 (471)
Q Consensus 290 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~ 362 (471)
..++.+.-+.| .|...--...+..+.. +..+.+.-.+..+.+ .+.......-..++... .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888877 3332222223333333 666666655555554 33332211111111111 11 235566667
Q ss_pred HHHhCCCCCCHhHHHHHHHHHhhc----CCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-C--CHHHHHHHHHHhh
Q 012108 363 LIEAMPFEPTESILGALLSACVIH----QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC-G--QWEEANRWRNMMN 435 (471)
Q Consensus 363 ~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~ 435 (471)
.+.+...+-+......+...|..- .+++.|...+......+ ......++..+... | .+..|.+++++..
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 776665455555555555554432 35777777777776665 34444555554432 1 1677888888776
Q ss_pred hCCC
Q 012108 436 DTGI 439 (471)
Q Consensus 436 ~~~~ 439 (471)
+.+.
T Consensus 537 ~~~~ 540 (552)
T KOG1550|consen 537 EEDS 540 (552)
T ss_pred hcCc
Confidence 5443
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.43 E-value=14 Score=35.58 Aligned_cols=97 Identities=19% Similarity=0.107 Sum_probs=44.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 012108 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361 (471)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (471)
+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+.+...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHH
Confidence 4455555554444322 334455555555555665555555555544 344444455555544333
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHH
Q 012108 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK 397 (471)
Q Consensus 362 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 397 (471)
.+-.... .....|...-++...|+++++.+++.
T Consensus 713 ~la~~~~---~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAK---KQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHH---hhcccchHHHHHHHcCCHHHHHHHHH
Confidence 2222221 00011222334445566666655543
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.25 E-value=16 Score=31.68 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHH
Q 012108 92 MDHAMKLIDLMPLK--DVTSFNIMISGYARIGKIHSARYIF 130 (471)
Q Consensus 92 ~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 130 (471)
..+|+++|--+... .+.+-..++..+-...+..+|...+
T Consensus 149 s~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 149 SRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHH
Confidence 35667776665543 2444455555555555555554444
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.02 E-value=4.9 Score=28.20 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 012108 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATD 232 (471)
Q Consensus 187 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (471)
++.+-++.+....+.|+.......+++|.+.+++..|.++++-.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455556666666677777777777777777777777777776653
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.94 E-value=0.94 Score=24.14 Aligned_cols=29 Identities=7% Similarity=-0.141 Sum_probs=23.6
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 377 GALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
-.+..++.+.|++++|.+.|+++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34666777889999999999999888775
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.90 E-value=0.92 Score=26.56 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 413 MFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
.|+++|...|+.+.|.++++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4566666666666666666666543
No 333
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.67 E-value=25 Score=33.14 Aligned_cols=242 Identities=8% Similarity=-0.022 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc------CChHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHHhcCChHH
Q 012108 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANL------GSLETGARIHVYATDNG-L-ASNPHATTALIDMYAKCGSIEQ 257 (471)
Q Consensus 186 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~ 257 (471)
+....+|++..+. .|+...+...|..|... ..+.....+++...+.+ . +.....|..+...++......+
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3444667666653 46666666666665432 13344445555554433 2 2345566666666666555433
Q ss_pred -HHHHHhcCCCCChhhHHHHHHHHHhc-CChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH--HHHHHHhH
Q 012108 258 -SLEVFYKSQVKDVFCWNAMILGLALH-GYGYA-ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG--CELFSRME 332 (471)
Q Consensus 258 -a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~ 332 (471)
|..+..+....+...|..-++...+. .+++- -..++...+..-..+....++... +....+.. ..++..+.
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh----hccchhHHHHHHHHHHHH
Confidence 33333344455666665555554432 12221 112233333321122222233222 11112221 12333333
Q ss_pred HhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHh--hcCCchHHHHHHHHHHHcCCCCCc
Q 012108 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACV--IHQDLEIGDRVAKMVCAKSNYLSD 408 (471)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~ 408 (471)
. .+.......-+.+++.+...|-..+|...+..+ .. +|+...|..++..-. ..-+...+..+++.+...-.. ++
T Consensus 453 s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~-d~ 530 (568)
T KOG2396|consen 453 S-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA-DS 530 (568)
T ss_pred H-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC-Ch
Confidence 3 233333444466777888888899999998887 22 346677777775422 223477888889888765445 78
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 409 GELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
..|......-...|..+.+-.++.+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 899888887778888888777665554
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.57 E-value=1.3 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHc
Q 012108 374 SILGALLSACVIHQDLEIGDRVAKMVCAK 402 (471)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (471)
.+++.|...|...|++++|..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888899999999999998888764
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.31 E-value=18 Score=31.02 Aligned_cols=58 Identities=7% Similarity=0.038 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 012108 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPD-----------YLTVTSVLSACANLGSLETGARIHVYAT 231 (471)
Q Consensus 174 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (471)
.|...|...+.+.+..++++++.+.-...| ...|..-|..|....+-.....+|++..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 345555556666666666665543211111 1345555666666666666666776654
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.29 E-value=2.5 Score=37.25 Aligned_cols=93 Identities=11% Similarity=-0.086 Sum_probs=64.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcC
Q 012108 277 ILGLALHGYGYAALKLLGEMNDSCVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355 (471)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (471)
..-|.++|.+++|+..|...... .| +.+++..-..+|.+...+..|+.=...+.. -...-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHHHHHh
Confidence 45699999999999999998875 55 889999999999999999988877776665 11122334444444444455
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 012108 356 LLDRAIELIEAM-PFEPTE 373 (471)
Q Consensus 356 ~~~~A~~~~~~~-~~~p~~ 373 (471)
...+|.+-++.. .+.|..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 666666555544 456663
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.18 E-value=1.7 Score=34.60 Aligned_cols=108 Identities=11% Similarity=0.048 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHH---HhhcCCHHHHHHHHHhC--------CCCCCH-hHHHHHHHHHhhcCC
Q 012108 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDL---LGRARLLDRAIELIEAM--------PFEPTE-SILGALLSACVIHQD 388 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~ 388 (471)
++.|.+..+.... ..+.|...++.-..+ +++.....++.+++++. .+.|+. .++..+..++...+.
T Consensus 7 FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4455555555443 223344444333333 33333434444444433 355653 566667776664432
Q ss_pred -----------chHHHHHHHHHHHcCCCCCchhHHHHHHHHHh-cCCHHHHHHHHHHhhhCCC
Q 012108 389 -----------LEIGDRVAKMVCAKSNYLSDGELMMFANLYAS-CGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 389 -----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~ 439 (471)
+++|...|+++...+|. -..|.+ .+-..+|-++..++.+.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~---------ne~Y~ksLe~~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPN---------NELYRKSLEMAAKAPELHMEIHKQGL 138 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT----------HHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 55566666666666666 233333 2334456666666655543
No 338
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=87.09 E-value=14 Score=29.75 Aligned_cols=175 Identities=11% Similarity=0.003 Sum_probs=92.0
Q ss_pred ccCCCCCcccHHHHHHHHhh----ccchhHHHHHHHHHHHhccCCch----hHHHHHHHHHhccCCHhHHHHHhcccCCC
Q 012108 3 ELGVHADNYSFPLLLKAAGI----LSSSCIGLMLHGQTIKTGFCGHV----YVQTALLKMYGSLRCIDDAFKVFEKMPEK 74 (471)
Q Consensus 3 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 74 (471)
+.|.-+|...++.++.-+.. .+..+.+..+-.+....++..+- .....-+..|-..||+.+--.+|-....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~- 79 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM- 79 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh-
Confidence 46888888899888877654 44566666666666666655432 2222334556667777776666654321
Q ss_pred CcccHHHHHHHHHcCCCHHH-----HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 012108 75 DIIAWNSMLDAFASCGQMDH-----AMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149 (471)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 149 (471)
++-+.+++++ |..+.+.........|...+.+-++.-+.+++-+.+ =-.+--+++-.|.
T Consensus 80 ----------gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~------LGRiGiS~m~~Yh 143 (233)
T PF14669_consen 80 ----------GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTL------LGRIGISLMYSYH 143 (233)
T ss_pred ----------hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhh------hhHHHHHHHHHHH
Confidence 1111111111 222333333333344555555555544333332221 1112234555566
Q ss_pred hCCCHHHHHHHHHhccc------------------cChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 150 NAGEMEKAGEMFKKMLV------------------KNVITWNTMVTGYLRSQLYIEVVDLFDE 194 (471)
Q Consensus 150 ~~~~~~~A~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 194 (471)
+..++.+.+++++.+.. +--..-|.-...+.+.|..+.|+.++++
T Consensus 144 k~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 144 KTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 66666666666666511 1113455666677777777777777663
No 339
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.98 E-value=64 Score=37.06 Aligned_cols=310 Identities=8% Similarity=-0.015 Sum_probs=170.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc----CCC--ChhhHHHHHHHHHhCCCHHHHHHHHHh-ccccChHHHHHHHHHHHhcCC
Q 012108 112 IMISGYARIGKIHSARYIFDKV----PAK--DVVSWNSLILAYTNAGEMEKAGEMFKK-MLVKNVITWNTMVTGYLRSQL 184 (471)
Q Consensus 112 ~l~~~~~~~g~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 184 (471)
.+..+=.+.+.+..|...+++- .+. ...-+..+...|..-+++|...-+... ...|+ .+. -|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhcc
Confidence 4555666778888888888883 111 122334444588888888888777763 33333 222 3344567899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCChHHHHHHHh
Q 012108 185 YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHAT-TALIDMYAKCGSIEQSLEVFY 263 (471)
Q Consensus 185 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~ 263 (471)
++.|...|+.+.+.+ ++...+++-++......+.++.+.-..+-..... .+....+ +.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998764 3336677777777777777777666554444332 2222223 333345567777777777665
Q ss_pred cCCCCChhhHHHH--HHHHHhcCChH--HHHHHHHHHHhCCCCC--------C-HHHHHHHHHHHhccCcHHHHHHHHHH
Q 012108 264 KSQVKDVFCWNAM--ILGLALHGYGY--AALKLLGEMNDSCVKA--------D-DITFIGLLSACSHAGLVQEGCELFSR 330 (471)
Q Consensus 264 ~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~~~~~~~~p--------~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (471)
..+...|... +..+.+..+-+ .-.+.++.+++.-+.| + ...|..++....-. +.+.-.+.+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l-- 1616 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEEL-- 1616 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHh--
Confidence 3445555444 23333322211 1112333333221111 0 01222222221110 011111111
Q ss_pred hHHhcCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-----CHhHHHHHHHHHhhcCCchHHHHH
Q 012108 331 MEKDFGVTRK------LEHYGCMVDLLGRARLLDRAIELIEAM----PFEP-----TESILGALLSACVIHQDLEIGDRV 395 (471)
Q Consensus 331 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~ 395 (471)
.++.++ ...|..-+..-....+..+-+--+++. ...| -..+|....+.....|.++.|...
T Consensus 1617 ----~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1617 ----KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred ----hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 122222 222222222211112222211112211 1122 245788888888899999999998
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
+-.+.+.. -+..+...++.+...|+...|+.++++......
T Consensus 1693 ll~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 87777766 377888999999999999999999998875443
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.77 E-value=2.8 Score=34.45 Aligned_cols=74 Identities=14% Similarity=0.020 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC--CCchhHHHHHHH
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY--LSDGELMMFANL 417 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 417 (471)
.+.-+..+.+.+.+++++...++- +.+| |...-..++..++-.|++++|..-++-.-+..|. +-...|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344566777888899998887654 5556 4556677888899999999999988888887766 223455555554
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.69 E-value=5.6 Score=28.22 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 012108 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247 (471)
Q Consensus 187 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (471)
+..+-++.+....+.|+.......+++|.+.+++..|.++++.++..- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 345556666666677777777777777777777777777777766542 222225555443
No 342
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=5.6 Score=34.73 Aligned_cols=96 Identities=8% Similarity=-0.020 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 012108 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSC---VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (471)
...+...++..-....+++.++..+-+++... ..|+ .+-..+++.|.+ -+.++++.++..-.. +|+-||..+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllk-y~pq~~i~~l~npIq-YGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLK-YDPQKAIYTLVNPIQ-YGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHc-cChHHHHHHHhCcch-hccccchhhHH
Confidence 44445555555555677888888777776531 1122 122233343333 456677777777776 78888888888
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 012108 346 CMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
.+++.+.+.+++.+|.++...|
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 8888888888888887776655
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.52 E-value=9.4 Score=27.03 Aligned_cols=78 Identities=12% Similarity=0.007 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 012108 25 SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104 (471)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 104 (471)
.-++|.-|-+.+...+- ....+-..-+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++..-+..+..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45778888887776542 244444555667788999999999999988888888887765 456666666666655554
Q ss_pred C
Q 012108 105 K 105 (471)
Q Consensus 105 ~ 105 (471)
.
T Consensus 97 s 97 (115)
T TIGR02508 97 S 97 (115)
T ss_pred C
Confidence 4
No 344
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.46 E-value=47 Score=35.08 Aligned_cols=253 Identities=9% Similarity=-0.030 Sum_probs=136.0
Q ss_pred HHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHhhcCCCChhhHHHH
Q 012108 66 KVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI-HSARYIFDKVPAKDVVSWNSL 144 (471)
Q Consensus 66 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~l 144 (471)
.+.+.+.++++.+-...+..+.+.+..+..-.+...+..++...-...+.++.+.+.. .....+...+..+|..+....
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 4444455667666666677776666544333344444444555555555555544321 111222222334566666666
Q ss_pred HHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH-H
Q 012108 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET-G 223 (471)
Q Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~-a 223 (471)
+..+...+.-+ ...+...+..+|...-...+.++.+.+..+. +..... .++...-.....++...+..+. +
T Consensus 705 ~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~ 776 (897)
T PRK13800 705 LDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPA 776 (897)
T ss_pred HHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchh
Confidence 66655443211 2234445556666655556666665554332 122222 3455555556666666555432 2
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 012108 224 ARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL-EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK 302 (471)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 302 (471)
...+..+.+ .++..+-...+.++...|..+.+. .+...+..++...-...+.++...+. +++...+..+.. .
T Consensus 777 ~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D 849 (897)
T PRK13800 777 GDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---D 849 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---C
Confidence 333444433 356777777778888877765543 33344445566566666777777665 345566655554 4
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 303 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
|+...-...+.++.+.+....+...+..+.+
T Consensus 850 ~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 850 PHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5666666667777665434456666666665
No 345
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.77 E-value=38 Score=33.36 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHcC
Q 012108 220 LETGARIHVYATDNG 234 (471)
Q Consensus 220 ~~~a~~~~~~~~~~~ 234 (471)
...+.++++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 345666666666555
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.58 E-value=22 Score=30.47 Aligned_cols=242 Identities=14% Similarity=0.140 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHhccc--c-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHccC
Q 012108 151 AGEMEKAGEMFKKMLV--K-----NVITWNTMVTGYLRSQLYIEVVDLFDEMKAG---NV--KPDYLTVTSVLSACANLG 218 (471)
Q Consensus 151 ~~~~~~A~~~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~--~p~~~~~~~l~~~~~~~~ 218 (471)
..++++|+.-|.++.+ + .-.+...++....+.+++++....|.+++.- .+ .-+..+.+.++...+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456666666666622 1 1223445666677777777777766666431 11 123344555555555555
Q ss_pred ChHHHHHHHHHHHH----cC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----C-----------ChhhHHHHHH
Q 012108 219 SLETGARIHVYATD----NG-LASNPHATTALIDMYAKCGSIEQSLEVFYKSQV----K-----------DVFCWNAMIL 278 (471)
Q Consensus 219 ~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-----------~~~~~~~l~~ 278 (471)
+.+....+|+.-.+ .. -..--.+-..|...|...+++.+..++++++.. . -...|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55444444433221 10 011112233466666666666666666654432 0 1245667788
Q ss_pred HHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----hccCcHHHHHHHHHHhHHhc---CCCCChh--HHHHH
Q 012108 279 GLALHGYGYAALKLLGEMNDS-CVKADDITFIGLLSAC-----SHAGLVQEGCELFSRMEKDF---GVTRKLE--HYGCM 347 (471)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~~~--~~~~l 347 (471)
.|...++-.+...++++.... ...|.+.... +|+-| .+.|++++|..=|-++.+.+ |.+.... -|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888888888888888876543 2345554443 44444 35688887764433333312 3333222 24444
Q ss_pred HHHHhhcCC----HHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHH
Q 012108 348 VDLLGRARL----LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398 (471)
Q Consensus 348 ~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (471)
..++.+.|- .++|. -.+..|.......++.+|. .++..+-+++++.
T Consensus 279 ANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred HHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 555554431 11111 0123455567788888884 4465555555543
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.99 E-value=1.9 Score=22.16 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 410 ELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
.+..++.++...|++++|...+++..+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555666666666666666666665543
No 348
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.98 E-value=4.6 Score=28.22 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=25.2
Q ss_pred CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCC
Q 012108 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL-SDGELMMFANLYASCGQ 423 (471)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 423 (471)
|...-..+...+...|++++|.+.+-.+++.++.. +...-..|+..+.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34444555555556666666666665555555442 23344455555555554
No 349
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.97 E-value=44 Score=33.40 Aligned_cols=163 Identities=13% Similarity=0.019 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhccCcHHHHH-----------HHHHHhHHhc
Q 012108 271 FCWNAMILGLAL---HGYGYAALKLLGEMNDSCVKADDITFIGLL-SACSHAGLVQEGC-----------ELFSRMEKDF 335 (471)
Q Consensus 271 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~-----------~~~~~~~~~~ 335 (471)
.-+..||..|.+ ..++.+|.++|--+....-+.....+...+ ......++++.-+ -++++-.+-.
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li 404 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI 404 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc
Confidence 456777777776 457778888877766543221222222222 2222222221111 1222211101
Q ss_pred CCCCChhHHH----HHHHHHhhcCCHHHHHHHHHhCCCCCC-HhHHHHHHHHHhhcC-C-----------chHHHHHHHH
Q 012108 336 GVTRKLEHYG----CMVDLLGRARLLDRAIELIEAMPFEPT-ESILGALLSACVIHQ-D-----------LEIGDRVAKM 398 (471)
Q Consensus 336 ~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~-----------~~~a~~~~~~ 398 (471)
++..+..... ....-+...|++++|..+|+-.+.-.. ....+.++.-..... . ...|..+.+.
T Consensus 405 ~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~ 484 (613)
T PF04097_consen 405 KFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILER 484 (613)
T ss_dssp T-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHH
Confidence 2222222222 223345677999999999988862211 223444443332222 2 2234444433
Q ss_pred HHHcC-------CCCCchhHHHHHH-----HHHhcCCHHHHHHHHHHh
Q 012108 399 VCAKS-------NYLSDGELMMFAN-----LYASCGQWEEANRWRNMM 434 (471)
Q Consensus 399 ~~~~~-------~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m 434 (471)
..... .. ...++..|.+ -+...|+|++|.+.++++
T Consensus 485 y~~~~~~~~~~~~~-~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 485 YKSNPHISSKVSRK-NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HTTSHHHHTTS-HH-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHhCcchHhhccHH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 32211 11 2334444443 355789999998877766
No 350
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.55 E-value=22 Score=29.51 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-hhHHHHHH--HHHhcCChHHHHHHHHHHHh
Q 012108 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQVKDV-FCWNAMIL--GLALHGYGYAALKLLGEMND 298 (471)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~--~~~~~~~~~~a~~~~~~~~~ 298 (471)
-+.+||-|.-.+...|+++.|.+.|+...+-|+ .-|..+=+ ++--.|++.-|.+-+...-.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 355666666666677777777777766555322 12222211 22334666666665555443
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.37 E-value=48 Score=33.31 Aligned_cols=299 Identities=8% Similarity=-0.084 Sum_probs=148.1
Q ss_pred hccchhHHHHHHHHHHHhccCCch-hHHHHHHHHHhccCCHhHHHHHhcccCC-CCcc-cHHHHHHHHHcCCCHHHHHHH
Q 012108 22 ILSSSCIGLMLHGQTIKTGFCGHV-YVQTALLKMYGSLRCIDDAFKVFEKMPE-KDII-AWNSMLDAFASCGQMDHAMKL 98 (471)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~~ 98 (471)
+.|+...+.++...+... +... ..|..+.... .....++...++++-.. |-.. .-...+..+.+.+++...+..
T Consensus 45 ~~g~~~~~~~~~~~l~d~--pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDY--PLYPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HCCCHHHHHHHHHhccCC--CcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 445666665555554322 1111 1222222211 23356777777766554 3222 223345556678888888884
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhCCCHH------------------HH
Q 012108 99 IDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV---PAKDVVSWNSLILAYTNAGEME------------------KA 157 (471)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~------------------~A 157 (471)
+..- ..+.......+.+....|+.++|......+ ....+.....+++.+.+.|.+. .|
T Consensus 122 ~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA 200 (644)
T PRK11619 122 SPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLV 200 (644)
T ss_pred cCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4332 336666677888888889887776666665 2234556666666666555433 33
Q ss_pred HHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--ccCChHHHHHHHHHHHHcC-
Q 012108 158 GEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA--NLGSLETGARIHVYATDNG- 234 (471)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~- 234 (471)
..+...+..........++..+ .+...+...+.. +.|+...-..++.++. ...+.+.|...+.......
T Consensus 201 ~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~ 272 (644)
T PRK11619 201 TYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQK 272 (644)
T ss_pred HHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 3332222111111111111111 112222221111 1222211111111221 3445677777777764433
Q ss_pred CCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 012108 235 LASN--PHATTALIDMYAKCGSIEQSLEVFYKSQVK--DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIG 310 (471)
Q Consensus 235 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 310 (471)
..+. ..+...+.......+...++...++..... +.....--+..-...++++.+...+..|.... .-...-..-
T Consensus 273 ~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW 351 (644)
T PRK11619 273 LNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYW 351 (644)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHH
Confidence 2221 122333333333333355666666654432 33444444445557778888777777775432 223344555
Q ss_pred HHHHHhccCcHHHHHHHHHHhHH
Q 012108 311 LLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
+.+++...|+.++|..+|+.+..
T Consensus 352 ~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 352 QADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc
Confidence 66776667888888888777653
No 352
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.25 E-value=7.6 Score=32.67 Aligned_cols=25 Identities=8% Similarity=-0.051 Sum_probs=15.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhH
Q 012108 308 FIGLLSACSHAGLVQEGCELFSRME 332 (471)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (471)
...=.+-+.+.|++.+|..-|+++.
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi 205 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAI 205 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHH
Confidence 3333445566677777777666654
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.07 E-value=28 Score=30.36 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
++....+.|...|.+.+|.++.++.+..+|- +...+-.|+..+...|+--.|..-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556788999999999999999999998 89999999999999999777777777663
No 354
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.05 E-value=14 Score=30.30 Aligned_cols=73 Identities=10% Similarity=0.002 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc--CCCCChhHHHHHHHHHhhcCCHHHH
Q 012108 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF--GVTRKLEHYGCMVDLLGRARLLDRA 360 (471)
Q Consensus 287 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 360 (471)
+.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.++.+-. +..+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433333333333333332 344445555444444311 1123444444444444444444443
No 355
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.66 E-value=13 Score=26.31 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012108 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299 (471)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (471)
-++|..+-+.+...+ .....+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 455555555554443 1122223333456778899999999988888888888876654 3567777777777777777
Q ss_pred CCCCCHHHHH
Q 012108 300 CVKADDITFI 309 (471)
Q Consensus 300 ~~~p~~~~~~ 309 (471)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 44444443
No 356
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.63 E-value=64 Score=34.16 Aligned_cols=265 Identities=11% Similarity=-0.020 Sum_probs=156.5
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCH-HHHHHHHHhccccChHHHHH
Q 012108 96 MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEM-EKAGEMFKKMLVKNVITWNT 174 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 174 (471)
-.+.+.+..+|+.+-...+..+.+.+..+-...+...+..++..+....+.++.+.+.. .....+...+..+|...-..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 34555556778888888999999888755444455555556766666666666555332 11222223334466665555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 012108 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254 (471)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (471)
.+..+...+..+ .. .+-++++ .+|...-...+.++.+.+..+. + ..+. -.++..+-...+.++...+.
T Consensus 704 A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l-~~~l---~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 704 ALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---V-AGAA---TDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---H-HHHh---cCCCHHHHHHHHHHHHHhcc
Confidence 666655443211 12 2333333 4565555566667766655432 2 2222 25667777777778877776
Q ss_pred hHH-HHHHH-hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 012108 255 IEQ-SLEVF-YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRME 332 (471)
Q Consensus 255 ~~~-a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (471)
.+. +...+ .-+..++...-...+.++...|....+...+..+.. .++...-...+.++...+. +++...+..+.
T Consensus 772 ~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 772 GGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHh
Confidence 543 33333 334557888888889999999887666555555554 3465666667778777765 44556666666
Q ss_pred HhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 012108 333 KDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALL 380 (471)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 380 (471)
+ .|+...-...+.++.+.+....+...+...-..+|..+-....
T Consensus 848 ~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 848 T----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred c----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5 3677777777777877643445666665553345554433333
No 357
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.61 E-value=18 Score=27.91 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=8.5
Q ss_pred HhhcCCHHHHHHHHHhC
Q 012108 351 LGRARLLDRAIELIEAM 367 (471)
Q Consensus 351 ~~~~g~~~~A~~~~~~~ 367 (471)
+...|++++|..+|++.
T Consensus 54 ~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 54 LIARGNYDEAARILREL 70 (153)
T ss_pred HHHcCCHHHHHHHHHhh
Confidence 34445555555555555
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.56 E-value=2.5 Score=24.72 Aligned_cols=26 Identities=19% Similarity=-0.003 Sum_probs=21.6
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHhc
Q 012108 15 LLLKAAGILSSSCIGLMLHGQTIKTG 40 (471)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 40 (471)
.|..+|...|+.+.|.++++++.+.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778889999999999999888655
No 359
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.44 E-value=36 Score=31.19 Aligned_cols=59 Identities=8% Similarity=0.012 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 012108 172 WNTMVTGYLRSQLYIEVVDLFDEMKAGN--VKPDYLTVTSVLSACANLGSLETGARIHVYA 230 (471)
Q Consensus 172 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (471)
+.-+...|...|+.+.|++.|.+...-- .+-....|..+|....-.|+|..+..+..+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 4445555555566666655555533221 0111223333444444445555444444443
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.30 E-value=16 Score=29.91 Aligned_cols=72 Identities=15% Similarity=0.096 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHhcCChHHH
Q 012108 186 IEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN---GLASNPHATTALIDMYAKCGSIEQS 258 (471)
Q Consensus 186 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 258 (471)
+.|.+.|-++...+.--+......+. .|....+.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555555555554333333333333 333355566666665555442 1244566666666666666666554
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.10 E-value=6 Score=29.80 Aligned_cols=25 Identities=4% Similarity=-0.086 Sum_probs=12.9
Q ss_pred HHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 381 SACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
-++.+.++++++.++.+..++..|+
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 3444555555555555555555444
No 362
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=82.34 E-value=35 Score=30.25 Aligned_cols=22 Identities=9% Similarity=0.003 Sum_probs=9.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 012108 344 YGCMVDLLGRARLLDRAIELIE 365 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~ 365 (471)
+......|++.|+.+.|++.++
T Consensus 107 ~~~kaeYycqigDkena~~~~~ 128 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALR 128 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHH
Confidence 3334444444444444444443
No 363
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.16 E-value=1.2 Score=39.08 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=66.2
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHhhcCCchHHH
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTE-SILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~ 393 (471)
...|.++.|++.|...++ --++....|.--...+.+.++...|++=+... .+.||. .-|-.-..+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 345667777777776665 33445555555556666666666666655544 445543 23433344445567777777
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
..|..+.+++.+ ..+-..|-...-..+..++-...+++..+
T Consensus 203 ~dl~~a~kld~d--E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYD--EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhcccc--HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 777777776665 33333344444445555555555544433
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.01 E-value=2.5 Score=21.67 Aligned_cols=30 Identities=13% Similarity=-0.083 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
.+..+...+...|+++.|...++..++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455666677777888888888887776654
No 365
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=81.34 E-value=48 Score=31.10 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=23.3
Q ss_pred HHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 012108 65 FKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYA 118 (471)
Q Consensus 65 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 118 (471)
..+.+.+..++.........++...+.....-.+...+...++......+.++.
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 333333334444444455555555444444444333333334444434444443
No 366
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.23 E-value=21 Score=29.89 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHcCCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 390 EIGDRVAKMVCAKSNYLS-----DGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
..|.+.|+++.+....|. ......++....+.|++++|.+.|.++...+-.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 345666666655543322 345556777788888888888888888765433
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.57 E-value=12 Score=30.99 Aligned_cols=126 Identities=14% Similarity=-0.026 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCChhHHHHHHHH
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD-FGVTRKLEHYGCMVDL 350 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 350 (471)
+.+.-++.+.+.+...+++...++-++.+ +.|..+-..+++.++-.|++++|..-++-..+- ....+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778889999999999988877762 334556667889999999999998877766540 1233345566666653
Q ss_pred HhhcCCHHHHH-HHHHhC---C--CCCCHhHHHHHHHHHh-hcC-CchHHHHHHHHHHHcCCC
Q 012108 351 LGRARLLDRAI-ELIEAM---P--FEPTESILGALLSACV-IHQ-DLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 351 ~~~~g~~~~A~-~~~~~~---~--~~p~~~~~~~l~~~~~-~~g-~~~~a~~~~~~~~~~~~~ 405 (471)
- .+. ++|.-- + ..|.+.-...+..+.. ..+ .-+.+..+-+...+..|.
T Consensus 82 e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 82 E-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred H-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 2 222 233221 1 1133322233333332 333 344455555677777776
No 368
>PRK12798 chemotaxis protein; Reviewed
Probab=80.48 E-value=49 Score=30.65 Aligned_cols=187 Identities=16% Similarity=0.119 Sum_probs=114.5
Q ss_pred cCChHHHHHHHhcCCCC----ChhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHH
Q 012108 252 CGSIEQSLEVFYKSQVK----DVFCWNAMILGLA-LHGYGYAALKLLGEMNDSCVKADD----ITFIGLLSACSHAGLVQ 322 (471)
Q Consensus 252 ~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 322 (471)
.|+..++.+.+..+... ....+-.|+.+-. ...++.+|+++|+..+-. -|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57888888888777653 3455666666543 456788899999887653 3332 23444455567888888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHH-HHHHHHhh---cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHH
Q 012108 323 EGCELFSRMEKDFGVTRKLEHYG-CMVDLLGR---ARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKM 398 (471)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (471)
++..+-......+...|-..-|. .+...+.+ .-..+.-..++..|.-.--..+|..+.+.-...|+.+-|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88777666665444455433332 22333333 334455666666765223356888888888889999999888888
Q ss_pred HHHcCCCCCchhHHHHHHHHH-----hcCCHHHHHHHHHHhhhCCCccc
Q 012108 399 VCAKSNYLSDGELMMFANLYA-----SCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
+...... ...-...+..|. -..+++++.+.+..+-.....+.
T Consensus 283 A~~L~~~--~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 283 ALKLADP--DSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHhccC--CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 8887633 233333333333 23557777776666655444433
No 369
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.31 E-value=39 Score=29.40 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=74.1
Q ss_pred hCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHccCChH-HHH
Q 012108 150 NAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD----LFDEMKAGNVKPDYLTVTSVLSACANLGSLE-TGA 224 (471)
Q Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~ 224 (471)
+++++++|.+++..- ...+.+.|+...|-+ +++-..+.+++++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456777777776542 223444444433332 2333334455666655555555444332211 112
Q ss_pred HHHHHHH---HcCC--CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012108 225 RIHVYAT---DNGL--ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299 (471)
Q Consensus 225 ~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (471)
++.+.++ +.+- .-++..+..+...|.+.|++.+|+..|-....++...+..++......|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~-------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGY-------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTS--------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcC--------------
Confidence 2222222 2222 24678889999999999999999988765544333333222222222222
Q ss_pred CCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHH
Q 012108 300 CVKADDITFI-GLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 300 ~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
+.+...|. ..+--|...++...|...+....+
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22222222 122334556888888887777765
No 370
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.90 E-value=10 Score=26.10 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHH
Q 012108 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187 (471)
Q Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (471)
.|+.+.|.++++.++ ..+..|..++.++...|+-+-
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 355555555555555 555555555555555544433
No 371
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.79 E-value=4.6 Score=21.14 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 012108 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417 (471)
Q Consensus 387 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (471)
|+.+.+..+|++++...|. ++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPK-SVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-ChHHHHHHHHH
Confidence 4667888888888888776 77777776653
No 372
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.70 E-value=2.9 Score=25.69 Aligned_cols=30 Identities=10% Similarity=-0.034 Sum_probs=21.3
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCCCCch
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 409 (471)
+.-++.+.|++++|.+..+.+++..|. +..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~-N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPD-NRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS--HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC-cHH
Confidence 455677888888888888888888877 444
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.71 E-value=19 Score=34.61 Aligned_cols=138 Identities=13% Similarity=-0.063 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HhHH
Q 012108 302 KADDITFIGLLSACSHA--GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT--ESIL 376 (471)
Q Consensus 302 ~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~ 376 (471)
-|+..+..+++.-.... ...+-+-.++..|.. ...|--.+.|.-.-.+.-.|+...|...+... ...|- ....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 35555555544333221 223334444444443 33333222222222223458888888887766 33332 2344
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
..|.....+.|-...|-.++.+.+..... .+-++..++++|....+.+.|++.|++..+..+..+
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 55677777788888888888888888755 788888899999999999999999988877766544
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.07 E-value=25 Score=25.37 Aligned_cols=78 Identities=9% Similarity=-0.046 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 012108 25 SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104 (471)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 104 (471)
..++|..|.+.+...+- ....+-...+..+.++|++++|...=.....||...|-+|-. .+.|--+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 56889999999888763 344555556677788999999954444444577777776644 578888888888887665
Q ss_pred C
Q 012108 105 K 105 (471)
Q Consensus 105 ~ 105 (471)
.
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 5
No 375
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.70 E-value=4.6 Score=24.83 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=13.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 416 NLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
-++.+.|++++|.+..+.+.+..|.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3455555555555555555554443
No 376
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.24 E-value=39 Score=27.20 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC----c-------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 012108 287 YAALKLLGEMNDSCVKADD-ITFIGLLSACSHAG----L-------VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352 (471)
Q Consensus 287 ~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 352 (471)
++|+.-|++... +.|+. .++..+..++...+ + +++|.+.|+++.. ..|+...|+.-+....
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH
Confidence 445555555554 35554 45555655554432 2 3444444544443 3577777766666553
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.43 E-value=24 Score=24.35 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=23.1
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 012108 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289 (471)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 289 (471)
..|+.+.|.+++..+. ..+..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 6666666666666666554433
No 378
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.15 E-value=85 Score=31.56 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh----------hhHHHHHHHHHhcCChH
Q 012108 222 TGARIHVYATDNGLAS---NPHATTALIDMYAKCGSIEQSLEVFYKSQV-KDV----------FCWNAMILGLALHGYGY 287 (471)
Q Consensus 222 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~~ 287 (471)
+-..++.+|.++--.| .+.+...++-.|....+++..+++.+.+.. ||. ..|.-.+.--.+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3344555555432223 344555666667777777777777665543 211 11222222223457777
Q ss_pred HHHHHHHHHHhC--CCCCCHHH-----HHHHH--HHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 012108 288 AALKLLGEMNDS--CVKADDIT-----FIGLL--SACSHAGLVQEGCELFSRMEKDFGVTRKLE 342 (471)
Q Consensus 288 ~a~~~~~~~~~~--~~~p~~~~-----~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 342 (471)
+|+...-.+.+. .+.||... |.-+. ..|-..+..+.|.+.|++.-+ +.|+..
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~ 321 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEY 321 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhh
Confidence 888777666554 35566433 22211 234455667788888888765 455543
No 379
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.12 E-value=46 Score=28.91 Aligned_cols=83 Identities=13% Similarity=-0.034 Sum_probs=41.8
Q ss_pred HHHHHhcCChHHHHHHH----hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-----
Q 012108 246 IDMYAKCGSIEQSLEVF----YKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS----- 316 (471)
Q Consensus 246 ~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----- 316 (471)
|+++...+++.++.... +.-++-.+.....-|-.|.+.+.+..+.++-..-....-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 45666666666665432 222222344445555566666666666666555443211112223555544433
Q ss_pred ccCcHHHHHHHH
Q 012108 317 HAGLVQEGCELF 328 (471)
Q Consensus 317 ~~~~~~~a~~~~ 328 (471)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666555
No 380
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=75.08 E-value=78 Score=30.11 Aligned_cols=232 Identities=10% Similarity=0.123 Sum_probs=123.2
Q ss_pred HHHHHhccc--cChHHHHHHHHHHHhc------CCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 012108 158 GEMFKKMLV--KNVITWNTMVTGYLRS------QLYIEVVDLFDEMKAG-NVKPD-YLTVTSVLSACANLGSLETGARIH 227 (471)
Q Consensus 158 ~~~~~~~~~--~~~~~~~~l~~~~~~~------~~~~~a~~~~~~m~~~-g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 227 (471)
..+|++..+ ++...|+..|..|... ......+.+++...+. +..++ ...|..+.-.++..+...++ -
T Consensus 302 ~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~---a 378 (568)
T KOG2396|consen 302 CAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV---A 378 (568)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH---H
Confidence 366666533 3455565555554432 2334445555555443 23333 33455555555554443332 2
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhc-CChHHHH-HHHhcCC----CCChhhHHHHHHHHHhcCC-hHHH--HHHHHHHHh
Q 012108 228 VYATDNGLASNPHATTALIDMYAKC-GSIEQSL-EVFYKSQ----VKDVFCWNAMILGLALHGY-GYAA--LKLLGEMND 298 (471)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~-~~~~~~~----~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~ 298 (471)
..+...++..+...+..-+....+. .+.+--. +.+.... .+-...|+... .|+ .... ..++....+
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 2223233455566665555555532 2222111 1122221 12333444443 122 1111 112333333
Q ss_pred CCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCC
Q 012108 299 SCVKADDITF-IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL---GRARLLDRAIELIEAM--PFEPT 372 (471)
Q Consensus 299 ~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~p~ 372 (471)
. ..|+..++ +.++.-+.+.|-..+|..++..+.. --+|+...|..+|+.= ..+| ..-+.++++.+ .+..|
T Consensus 454 ~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 454 V-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGAD 529 (568)
T ss_pred h-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCC
Confidence 3 35555554 3466777788888889999888887 4556777788777643 3334 66677777776 23377
Q ss_pred HhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 373 ESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
+..|...+.--...|..+.+-.++.++.+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 88888888777788888888777766544
No 381
>PF13934 ELYS: Nuclear pore complex assembly
Probab=74.57 E-value=49 Score=28.03 Aligned_cols=109 Identities=9% Similarity=0.089 Sum_probs=71.3
Q ss_pred HHhccCCchhHHHHHHHHH--hccCCHhHHHHHhcccCCCCc-cc-HHHHHHHHHcCCCHHHHHHHHhcCCCC--ChhhH
Q 012108 37 IKTGFCGHVYVQTALLKMY--GSLRCIDDAFKVFEKMPEKDI-IA-WNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSF 110 (471)
Q Consensus 37 ~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~-~~-~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 110 (471)
...++++. +...++++ ...+++++|...+-. |+. .. -..++.++...|+.+.|+.+++.+..+ +....
T Consensus 71 ~~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~ 144 (226)
T PF13934_consen 71 RAFGIPPK---YIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEAL 144 (226)
T ss_pred HHhCCCHH---HHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHH
Confidence 34455544 33444444 345788888888744 332 22 235788888899999999999988765 44444
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHhCC
Q 012108 111 NIMISGYARIGKIHSARYIFDKVPAKD-VVSWNSLILAYTNAG 152 (471)
Q Consensus 111 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~ 152 (471)
..++.. ..++.+.+|...-+....+. ...+..++..+....
T Consensus 145 ~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 145 TLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 444555 66789999998888876543 456667776666444
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.54 E-value=58 Score=28.38 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=36.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHccCChHHHHHHH
Q 012108 175 MVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV-------TSVLSACANLGSLETGARIH 227 (471)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~ 227 (471)
+.+-..+.+++++|...|.+++..|+..|..+. ..+...|...|+.....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 455667788888888888888888887766543 34555666666665544443
No 383
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=58 Score=28.37 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=35.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHhccCcHHHHHHHH
Q 012108 276 MILGLALHGYGYAALKLLGEMNDSCVKADDIT-------FIGLLSACSHAGLVQEGCELF 328 (471)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-------~~~l~~~~~~~~~~~~a~~~~ 328 (471)
+..-..+.+++++|+..+.+....|+..+..+ ...+...|...|+...-.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34455677888888888888888877666544 445566677777655444433
No 384
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=74.41 E-value=15 Score=25.26 Aligned_cols=60 Identities=5% Similarity=0.106 Sum_probs=36.1
Q ss_pred HHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHH
Q 012108 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188 (471)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 188 (471)
++..+....+.+....-..-....+.++|.++++.++.++..+|..+..++...|+..-|
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 333334444444444444445556677777777777777777777777777666655443
No 385
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.31 E-value=13 Score=31.23 Aligned_cols=118 Identities=10% Similarity=0.002 Sum_probs=77.0
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHhhcCCch
Q 012108 314 ACSHAGLVQEGCELFSRMEKDFGVTRKL-EHYGCMVDLLGRARLLDRAIELIEAM-PFEPTES-ILGALLSACVIHQDLE 390 (471)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~ 390 (471)
-|.....++.|...|.+... +.|+. ..|+.-+.++.+..+++.+..--.+. .+.|+.. ....+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35566778888887777765 45654 56677777888888888877655544 5666654 3344555667788899
Q ss_pred HHHHHHHHHHHcC----CCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 391 IGDRVAKMVCAKS----NYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 391 ~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
+|+..+.++.... +.|-......|..+-.+.=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999998885543 3344555666666544444455566665554
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.72 E-value=30 Score=25.82 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 288 AALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 288 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
+..+-++.+..-.+.|++.....-+++|.+.+++..|..+|+-++.+ +.+....|..+++ +..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 45566667777778999999999999999999999999999988873 4444445655553 445566666
Q ss_pred CC
Q 012108 368 PF 369 (471)
Q Consensus 368 ~~ 369 (471)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 387
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.56 E-value=65 Score=28.04 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=78.0
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHhccCcHH-HHH
Q 012108 251 KCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL----LGEMNDSCVKADDITFIGLLSACSHAGLVQ-EGC 325 (471)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~ 325 (471)
+.+++++|++++... ...+.+.|+...|-++ ++-..+.+.+++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456677777665331 2334455555444443 333334566666666555655554332211 122
Q ss_pred HHHHHhHHh--cCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 326 ELFSRMEKD--FGVT--RKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 326 ~~~~~~~~~--~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
++.+.+.+- .+-. -++.....+...|.+.|++.+|...|-.-. .|+...+..++......|...
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~----------- 138 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPS----------- 138 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCc-----------
Confidence 233333221 1222 267888888999999999999988775443 233333322332222223322
Q ss_pred cCCCCCchhHHH-HHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 402 KSNYLSDGELMM-FANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 402 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
+...|.+ .+--|...|+...|...++...+.
T Consensus 139 -----e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 139 -----EADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3344432 344567788889898888777654
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.03 E-value=34 Score=24.68 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012108 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMND 298 (471)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (471)
..++|..+.+.+...+. ....+--+-+..+.+.|++++|+..=.....||...|-+|. -.+.|-.+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 45667777776666552 23333333445566777777774444444446666665553 3466777777777777766
Q ss_pred CCCCCCHHHH
Q 012108 299 SCVKADDITF 308 (471)
Q Consensus 299 ~~~~p~~~~~ 308 (471)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3333333
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.37 E-value=19 Score=29.55 Aligned_cols=30 Identities=10% Similarity=-0.056 Sum_probs=13.4
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
.|++..|..++..+...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 390
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.17 E-value=60 Score=27.10 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhccc
Q 012108 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLV 166 (471)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 166 (471)
+.+||-|.-.+...|+++.|.+.|+...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 34555555555666666666666666543
No 391
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.17 E-value=99 Score=29.59 Aligned_cols=173 Identities=10% Similarity=0.044 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 012108 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247 (471)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (471)
|....-+++..+..+-.+.-+..+..+|+.-| .+...|..++.+|... ..+.-..+|+++.+.. -.|+..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence 33444556666666666677777777777643 4556666677766665 4455666777666654 233333444555
Q ss_pred HHHhcCChHHHHHHHhcCCCC------Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc
Q 012108 248 MYAKCGSIEQSLEVFYKSQVK------DV---FCWNAMILGLALHGYGYAALKLLGEMNDS-CVKADDITFIGLLSACSH 317 (471)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 317 (471)
.|-+ ++.+.+..+|.++... +. ..|..+...- ..+.+..+.+..+.... |..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 6666666666553321 11 1333333211 23445555555554432 223333444445555666
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012108 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349 (471)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (471)
..++++|++++..+.+ ....|...-..++.
T Consensus 218 ~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILE--HDEKDVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhh--hcchhhhHHHHHHH
Confidence 6677777777776666 23344444444444
No 392
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.00 E-value=95 Score=29.34 Aligned_cols=114 Identities=6% Similarity=0.036 Sum_probs=77.5
Q ss_pred HHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCCCHHHH
Q 012108 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCGQMDHA 95 (471)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 95 (471)
-....|+.-.|-+-+...++.. +.++.............|+++.+...+..... ....+...+++...+.|++++|
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 3445677766654444444332 22333333344556678999999988876554 4566788889999999999999
Q ss_pred HHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 012108 96 MKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKV 133 (471)
Q Consensus 96 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 133 (471)
..+-+-|... +++.........-..|-++++.-.++++
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHH
Confidence 9998888755 5555555555566677888888888777
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.52 E-value=16 Score=24.68 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=29.9
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCchhHH---HHHHHHHhcCCHHHHHHH
Q 012108 385 IHQDLEIGDRVAKMVCAKSNYLSDGELM---MFANLYASCGQWEEANRW 430 (471)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~ 430 (471)
...+.++|+..|+++++.-++ .+.-|. .|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888777666 334443 455677777777776554
No 394
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.41 E-value=3.9 Score=37.90 Aligned_cols=97 Identities=7% Similarity=-0.041 Sum_probs=68.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHhhcC
Q 012108 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRK-LEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT-ESILGALLSACVIHQ 387 (471)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 387 (471)
-+..+...+.++.|..++.++.+ ..|+ ...|..-..++.+.+++..|+.=+..+ ...|+ ...|.--..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677889999999999987 3554 444444457788888888887655554 55554 345555566777888
Q ss_pred CchHHHHHHHHHHHcCCCCCchhH
Q 012108 388 DLEIGDRVAKMVCAKSNYLSDGEL 411 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~ 411 (471)
.+.+|...|+......|. ++..-
T Consensus 87 ~~~~A~~~l~~~~~l~Pn-d~~~~ 109 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPN-DPDAT 109 (476)
T ss_pred HHHHHHHHHHHhhhcCcC-cHHHH
Confidence 899999999988888877 54433
No 395
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.90 E-value=75 Score=27.70 Aligned_cols=85 Identities=8% Similarity=0.089 Sum_probs=43.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH---
Q 012108 176 VTGYLRSQLYIEVVDLFDEMKAG--NVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA--- 250 (471)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 250 (471)
|.+++..++|.+++...-+.-+. .++|...- .-|-.|.+.+.+..+.++-..-....-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 45666667776666555443221 23333322 223345666666666666555544322222333555544443
Q ss_pred --hcCChHHHHHHH
Q 012108 251 --KCGSIEQSLEVF 262 (471)
Q Consensus 251 --~~~~~~~a~~~~ 262 (471)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 356666666665
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.65 E-value=40 Score=25.22 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 012108 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233 (471)
Q Consensus 188 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (471)
..+-++.+....+.|+.......+++|.+.+++..|.++++.++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3445555666667777777777777887888888888777776544
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.68 E-value=1.1e+02 Score=28.57 Aligned_cols=54 Identities=17% Similarity=0.069 Sum_probs=33.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhHH
Q 012108 279 GLALHGYGYAALKLLGEMNDSCVKADDI--TFIGLLSACS--HAGLVQEGCELFSRMEK 333 (471)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 333 (471)
.+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667777788777777765 444443 3334444443 35567777777777665
No 398
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.61 E-value=48 Score=33.82 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=68.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 012108 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361 (471)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (471)
..|+.+.|++.-.++- +..+|..|......+|+.+-|+..|+.... |..|--.|.-.|+.++-.
T Consensus 655 e~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHH
Confidence 4455665555443322 445667777777777777777777766654 334444555666666666
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 362 ELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 362 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
++.+....+.|..+.. ....-.|+.++-.++++.. |.. +-.|. .-...|.-++|.++.++..+..+.
T Consensus 719 Km~~iae~r~D~~~~~---qnalYl~dv~ervkIl~n~---g~~--~layl----ta~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 719 KMMKIAEIRNDATGQF---QNALYLGDVKERVKILENG---GQL--PLAYL----TAAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred HHHHHHHhhhhhHHHH---HHHHHhccHHHHHHHHHhc---Ccc--cHHHH----HHhhcCcHHHHHHHHHhhccccCC
Confidence 6665554444433221 1112346666665555432 111 22221 112356667777777777654443
No 399
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.44 E-value=16 Score=24.58 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=7.9
Q ss_pred ccCcHHHHHHHHHHhHH
Q 012108 317 HAGLVQEGCELFSRMEK 333 (471)
Q Consensus 317 ~~~~~~~a~~~~~~~~~ 333 (471)
...+.++|+..|..+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 18 HQNETQQALQKWRKALE 34 (80)
T ss_pred ccchHHHHHHHHHHHHh
Confidence 33444444444444444
No 400
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.29 E-value=13 Score=31.13 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=35.2
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
.+.+|.+.|.+++.++.+.-|. ....|..++..-.+.|+++.|.+.|++..+.++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3456666666666666666666 6666666666666666666666666666655544
No 401
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.06 E-value=23 Score=22.65 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMK 196 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~ 196 (471)
-.-.++.++...|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33345566666666666666665554
No 402
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.94 E-value=44 Score=31.09 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhc-----------cccChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012108 141 WNSLILAYTNAGEMEKAGEMFKKM-----------LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196 (471)
Q Consensus 141 ~~~l~~~~~~~~~~~~A~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 196 (471)
...|++.++-.||+..|+++++.+ ..-.+.++..+.-+|.-.+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666655 11134456666677777777777777777653
No 403
>PF13934 ELYS: Nuclear pore complex assembly
Probab=66.90 E-value=79 Score=26.81 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=70.7
Q ss_pred cHHHHHHHH--HcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHhCCC
Q 012108 78 AWNSMLDAF--ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK--DVVSWNSLILAYTNAGE 153 (471)
Q Consensus 78 ~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 153 (471)
.|...++++ ...+++++|++.+-.-.. .+.--..++.++...|+.+.|..++....++ +......++.. ..++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~-~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSL-IPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGL 155 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCC-CcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCC
Confidence 355556654 556889999998854422 2222336888899899999999999988553 23333333444 67799
Q ss_pred HHHHHHHHHhccccC-hHHHHHHHHHHHhcC
Q 012108 154 MEKAGEMFKKMLVKN-VITWNTMVTGYLRSQ 183 (471)
Q Consensus 154 ~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~ 183 (471)
+.+|..+-+....+. ...+..++..+....
T Consensus 156 v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 156 VTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 999999888876543 456777777776544
No 404
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.30 E-value=80 Score=31.70 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHHccCChHHHHHHHHHHHHc
Q 012108 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYL----------TVTSVLSACANLGSLETGARIHVYATDN 233 (471)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (471)
..+-..++-.|....+++...++.+.++. -||.. .|...++--.+.|+-++|....-.+.+.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK 272 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh
Confidence 34555667778888888888888888876 34432 2333333333567777777766666544
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.97 E-value=25 Score=33.87 Aligned_cols=101 Identities=9% Similarity=-0.063 Sum_probs=71.3
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHH
Q 012108 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDR 394 (471)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 394 (471)
-.|+...|...+..+........++ ..-.|.+...+.|-.-.|..++.+. . ....+.++..+.+++....+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 4688899988888776522222222 2334555666667777777776554 2 23345677888999999999999999
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHH
Q 012108 395 VAKMVCAKSNYLSDGELMMFANLYA 419 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (471)
.|+++.+..|+ ++.+-+.|...-+
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 99999999999 8888777665443
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.58 E-value=47 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMND 298 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (471)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777665
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.47 E-value=62 Score=25.06 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 012108 270 VFCWNAMILGLALHGY-GYAALKLLGEMNDSCVKADDITFIGLLSACSH 317 (471)
Q Consensus 270 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 317 (471)
...|.+++.+..+..- --.+..+|.-|++.+.++++.-|..++.++.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3445555555544333 22344555555555555666666666665544
No 408
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.30 E-value=1.1e+02 Score=28.10 Aligned_cols=125 Identities=10% Similarity=0.000 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHH
Q 012108 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGAL 379 (471)
Q Consensus 302 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 379 (471)
+-...++..+...+..+|+.+.|.++++++.-..+. .-...+..+.. -...|. .++ ...-|...|.++
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~-~~~~~F~~~~~-~~~~g~--------~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER-AFHPSFSPFRS-NLTSGN--------CRLDYRRPENRQFFLAL 106 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHhhhhhc-ccccCc--------cccCCccccchHHHHHH
Confidence 335566677777778888888887777776541100 00000000000 000000 001 011133333333
Q ss_pred ---HHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHH-hcCCHHHHHHHHHHhhh
Q 012108 380 ---LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA-SCGQWEEANRWRNMMND 436 (471)
Q Consensus 380 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 436 (471)
+..+.+.|-+..|.++.+-+...+|.-||-....+++.|+ +.++++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3456677778888888888888777756666666666655 56777777777766543
No 409
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.04 E-value=24 Score=21.12 Aligned_cols=36 Identities=14% Similarity=-0.047 Sum_probs=29.5
Q ss_pred HHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHH
Q 012108 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKM 54 (471)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 54 (471)
...+.|-..++..+++.|.+.|+.-+...+..++..
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 344678888999999999999998888888877653
No 410
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.74 E-value=1.8e+02 Score=30.09 Aligned_cols=219 Identities=10% Similarity=-0.023 Sum_probs=112.5
Q ss_pred HHhCCCHHHHHHHHHhc----cccCh-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 012108 148 YTNAGEMEKAGEMFKKM----LVKNV-------ITWNTMVT-GYLRSQLYIEVVDLFDEMKAG----NVKPDYLTVTSVL 211 (471)
Q Consensus 148 ~~~~~~~~~A~~~~~~~----~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l~ 211 (471)
.....++++|..++.++ ..|+. ..|+.+-. .....|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888776 22221 13443322 344578888888888776553 1123334455666
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHH---HHH--HHHHHhcCChHHHH--HHHhcCC-----CCCh-----hhHH
Q 012108 212 SACANLGSLETGARIHVYATDNGLASNPHAT---TAL--IDMYAKCGSIEQSL--EVFYKSQ-----VKDV-----FCWN 274 (471)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~~~~a~--~~~~~~~-----~~~~-----~~~~ 274 (471)
.+..-.|++++|..+..+..+..-.-+...+ ..+ ...+...|....+. ..|.... +... .+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 6777788999998888777654322233222 222 23455566333222 2222211 1111 2333
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH---H
Q 012108 275 AMILGLAL-HGYGYAALKLLGEMNDSCVKADDITF--IGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-LEHYGC---M 347 (471)
Q Consensus 275 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~---l 347 (471)
.+..++.+ .+...++..-+.-.......|-...+ ..++......|+.++|...+.++.. ....+. ...|.+ .
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~-l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER-LLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HhcCCCCCchHHHHHHH
Confidence 34444443 12222222222222222222222222 2567777888999999988888876 222221 111221 2
Q ss_pred H--HHHhhcCCHHHHHHHHHhC
Q 012108 348 V--DLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 348 ~--~~~~~~g~~~~A~~~~~~~ 367 (471)
+ ......|+.+.+.....+-
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhc
Confidence 2 2234668888877776663
No 411
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.73 E-value=98 Score=27.12 Aligned_cols=67 Identities=10% Similarity=-0.025 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhHHH-HHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 339 RKLEHYGCMVDLLGRARLLDRAIELIEAM-------PFEPTESILG-ALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
--...+..+...|++.++.+.+.+.+.+. +.+-|+.... -|.-.|....-.++-++..+.+++.|.+
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 34555666666666666666666665543 2333333221 1222233344455566666666666654
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.59 E-value=32 Score=24.17 Aligned_cols=23 Identities=4% Similarity=-0.184 Sum_probs=11.3
Q ss_pred HHhhcCCchHHHHHHHHHHHcCC
Q 012108 382 ACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
.....|++++|...++++++...
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 34444555555555555544433
No 413
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.39 E-value=1.3e+02 Score=28.33 Aligned_cols=142 Identities=12% Similarity=0.082 Sum_probs=72.6
Q ss_pred HHhhccchhHHHHHHHHHHHhccCCchhH--HHHHHHHHhccCCHhHHHHHhcccCCCCcc--cHHHHHHHHHcCCCHHH
Q 012108 19 AAGILSSSCIGLMLHGQTIKTGFCGHVYV--QTALLKMYGSLRCIDDAFKVFEKMPEKDII--AWNSMLDAFASCGQMDH 94 (471)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~ 94 (471)
..+..|+.+-+ +.+++.|..|+... ..+.+...+..|+.+-+.-+++.-..++.. .....+...++.|+.+.
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 33445666544 44445666554422 234455666778887777666654333221 11223445567788877
Q ss_pred HHHHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--hHHHHHHHHHhCCCHHHHHHHHHhc
Q 012108 95 AMKLIDLMPLKDV---TSFNIMISGYARIGKIHSARYIFDKVPAKDVV--SWNSLILAYTNAGEMEKAGEMFKKM 164 (471)
Q Consensus 95 A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~ 164 (471)
+..+++.-...+. ..-.+.+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+-+.-+++.-
T Consensus 84 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 84 VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 7777765432210 01122334455667777666666655333221 1122344455666666655555543
No 414
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.08 E-value=1.6e+02 Score=29.49 Aligned_cols=407 Identities=13% Similarity=0.045 Sum_probs=203.0
Q ss_pred hHHHHHHHHHH-HhccCCc--hhHHHHHHHHHh-ccCCHhHHHHHhcccCC----CCc-----ccHHHHHHHHHcCCCHH
Q 012108 27 CIGLMLHGQTI-KTGFCGH--VYVQTALLKMYG-SLRCIDDAFKVFEKMPE----KDI-----IAWNSMLDAFASCGQMD 93 (471)
Q Consensus 27 ~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~----~~~-----~~~~~li~~~~~~g~~~ 93 (471)
..|..-++-+. +..++|. ..+.-.+...+. ...+++.|+..+++... ++. .+...++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 34455556555 3333443 345566677776 67899999999997542 111 12334566666666555
Q ss_pred HHHHHHhcCCCC------Ch--hhHHHH-HHHHHhcCCHHHHHHHHhhcCC-----CCh--hhHHHHHHH--HHhCCCHH
Q 012108 94 HAMKLIDLMPLK------DV--TSFNIM-ISGYARIGKIHSARYIFDKVPA-----KDV--VSWNSLILA--YTNAGEME 155 (471)
Q Consensus 94 ~A~~~~~~~~~~------~~--~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-----~~~--~~~~~l~~~--~~~~~~~~ 155 (471)
|...+++.... .. ..|..+ +..+...++...|.+.++.+.. .|. .++-.++.+ ..+.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88877775433 11 122222 2222233789999999888722 233 333334433 33456566
Q ss_pred HHHHHHHhc----c---------ccChHHHHHHHH--HHHhcCCHHHHHHHHHHHHh---CC-CC---------------
Q 012108 156 KAGEMFKKM----L---------VKNVITWNTMVT--GYLRSQLYIEVVDLFDEMKA---GN-VK--------------- 201 (471)
Q Consensus 156 ~A~~~~~~~----~---------~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~---~g-~~--------------- 201 (471)
++.+.++++ . .|...+|..++. ++...|+++.+...++++.+ .. -.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 676666665 1 123455666655 45567777777666655532 10 00
Q ss_pred -----------CCHH---------HHHHHHH--HHHccCChHHHHHHHHHHHH--------cCCCCch--------hHHH
Q 012108 202 -----------PDYL---------TVTSVLS--ACANLGSLETGARIHVYATD--------NGLASNP--------HATT 243 (471)
Q Consensus 202 -----------p~~~---------~~~~l~~--~~~~~~~~~~a~~~~~~~~~--------~~~~~~~--------~~~~ 243 (471)
|... ....++. ..+..+..+++.+++++..+ ....++. ..+.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 1111 1111122 22334544466665555432 1111111 1111
Q ss_pred HHH---------HHHHhcCChHHHHHHHhcCCC-----CC-----hhhHHHHH--HHHHhcCChHHHHHHHH--------
Q 012108 244 ALI---------DMYAKCGSIEQSLEVFYKSQV-----KD-----VFCWNAMI--LGLALHGYGYAALKLLG-------- 294 (471)
Q Consensus 244 ~l~---------~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l~--~~~~~~~~~~~a~~~~~-------- 294 (471)
..+ -..+-.+++..|...+..+.. ++ ...+...+ -.+...|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 111 122346788888877776543 11 12222333 33445799999999997
Q ss_pred HHHhCCCCCCHHHHHHH--HHHHhcc--CcHHH--HHHHHHHhHHhcCCCCC--hhHH-HHHHHHHhhc---------CC
Q 012108 295 EMNDSCVKADDITFIGL--LSACSHA--GLVQE--GCELFSRMEKDFGVTRK--LEHY-GCMVDLLGRA---------RL 356 (471)
Q Consensus 295 ~~~~~~~~p~~~~~~~l--~~~~~~~--~~~~~--a~~~~~~~~~~~~~~~~--~~~~-~~l~~~~~~~---------g~ 356 (471)
.....+...+...+..+ +..+... ...++ +.++++.+.......|+ ..++ ..++.++... ..
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 44444444444443332 1122222 22333 67777777653333333 2223 3333333221 12
Q ss_pred HHHHHHHH-HhCCCCCCH-hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC---CCchhHH-----HHHHHHHhcCCHHH
Q 012108 357 LDRAIELI-EAMPFEPTE-SILGALLSACVIHQDLEIGDRVAKMVCAKSNY---LSDGELM-----MFANLYASCGQWEE 426 (471)
Q Consensus 357 ~~~A~~~~-~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~-----~l~~~~~~~g~~~~ 426 (471)
+.++.+.. +..+..--. .+++.+...+. .|+..+..+..........+ .....|. .+...|...|+.++
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 33444444 333322112 22333333333 67877766665554443322 2445553 34455778899999
Q ss_pred HHHHHHHhh
Q 012108 427 ANRWRNMMN 435 (471)
Q Consensus 427 A~~~~~~m~ 435 (471)
|.....+..
T Consensus 596 a~~~~~~~~ 604 (608)
T PF10345_consen 596 AEEARQQLD 604 (608)
T ss_pred HHHHHHHHH
Confidence 998887764
No 415
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=1.2e+02 Score=27.86 Aligned_cols=202 Identities=11% Similarity=0.036 Sum_probs=117.3
Q ss_pred cCChHHHHHHHhcCCC---------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----c
Q 012108 252 CGSIEQSLEVFYKSQV---------KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH----A 318 (471)
Q Consensus 252 ~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 318 (471)
.++.+.|++-+-...+ .+...+..++..|...++|+.--+.+.-+....-. .......+++-+.. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 5667777665543332 13445666777777888887766655554432111 12233333333221 1
Q ss_pred CcHHHHHHH---HHHhHHhcCC-CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHH------------HHH
Q 012108 319 GLVQEGCEL---FSRMEKDFGV-TR-KLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGA------------LLS 381 (471)
Q Consensus 319 ~~~~~a~~~---~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------l~~ 381 (471)
.+.+--+.+ ++...+..-+ .. ....-..|...+-.+|+.++|..++.+.++. ||.+ =++
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHH
Confidence 122222222 2222220000 00 1122234566677899999999999988522 2222 245
Q ss_pred HHhhcCCchHHHHHHHHHHHcCCC-CCc-----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCcceEEEEcCeEe
Q 012108 382 ACVIHQDLEIGDRVAKMVCAKSNY-LSD-----GELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVIEVNGSYH 455 (471)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 455 (471)
.|...+|+-.|.-+-++....-.+ |+. ..|..+++.....+.+=++-+.++...+.|-...++.-|......+-
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv 259 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIV 259 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhe
Confidence 677888999998888777655433 222 35667778888888999999999999888887777777776655544
Q ss_pred EEe
Q 012108 456 KFL 458 (471)
Q Consensus 456 ~~~ 458 (471)
.|.
T Consensus 260 ~f~ 262 (439)
T KOG1498|consen 260 SFC 262 (439)
T ss_pred eEE
Confidence 443
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.72 E-value=43 Score=31.15 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhc-----------CCCChhhHHHHHHHHHhCCCHHHHHHHHHhc
Q 012108 109 SFNIMISGYARIGKIHSARYIFDKV-----------PAKDVVSWNSLILAYTNAGEMEKAGEMFKKM 164 (471)
Q Consensus 109 ~~~~l~~~~~~~g~~~~a~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 164 (471)
+...+++..+-.|++..|+++++.+ ..-.+.++--+.-+|.-.+++.+|.+.|..+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777666 1123445666677788888888898888876
No 417
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=62.41 E-value=39 Score=23.64 Aligned_cols=47 Identities=0% Similarity=0.012 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCC
Q 012108 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184 (471)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (471)
+.+-...-.......+.+++.++++.++..++.+|..+..++...+.
T Consensus 34 vlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 34 ILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 33333333344444566777777777777777777777777755444
No 418
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.91 E-value=2.1e+02 Score=29.95 Aligned_cols=369 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHH----HhccCCHhHHHHHhcccCC-------------CCcc--
Q 012108 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKM----YGSLRCIDDAFKVFEKMPE-------------KDII-- 77 (471)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~-------------~~~~-- 77 (471)
+..+....+++.|..+.+.....++.-...+-..-+.. +..+|++++|.+.|.++.. |+..
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP~l~p~~~~~ 393 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFPDLLPSENSS 393 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccChHHHHHhchhhcCCcccc
Q ss_pred -cHHHHHH--HHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH------------------HHHHHHHhhc---
Q 012108 78 -AWNSMLD--AFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKI------------------HSARYIFDKV--- 133 (471)
Q Consensus 78 -~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~------------------~~a~~~~~~~--- 133 (471)
.++..+. .-.-.|.....-.+ .....-...-......+...+.. +.-.++.+..
T Consensus 394 ~~~~~~vp~~~~~~~~~~~v~a~l--~~~~ylt~~r~~~~~~l~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~IDttLlk 471 (877)
T KOG2063|consen 394 IEFTGVVPIRAPELRGGDLVPAVL--ALIVYLTQSRREENKKLNKYKMLYMNYFKNTLISELLKSDLNDILELIDTTLLK 471 (877)
T ss_pred cceeeeccCchhhhccCcccchhh--hhhhHhHHHHHHHHHHHHHhhhhHHhhhhccCcchhhccchHHHHHHHHHHHHH
Q ss_pred --CCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHH
Q 012108 134 --PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA---GNVKPDYLTVT 208 (471)
Q Consensus 134 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~ 208 (471)
...|+..-..++..-...-.+++...++.+ ..-|..|+..|...|+.++|++++.+..+ ..-.--...+.
T Consensus 472 ~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k-----~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e 546 (877)
T KOG2063|consen 472 CYLETNPGLVGPLLRLENNHCDVEEIETVLKK-----SKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLE 546 (877)
T ss_pred HHHhcCchhhhhhhhccCCCcchHHHHHHHHh-----cccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHH
Q ss_pred HHHHHHHccCCh--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 012108 209 SVLSACANLGSL--ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYG 286 (471)
Q Consensus 209 ~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (471)
..++.+-+.+.. +-.+++-....+........++...-.--+..=..++....+ .....
T Consensus 547 ~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l-------------------~~~~~ 607 (877)
T KOG2063|consen 547 KIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYL-------------------KSKEP 607 (877)
T ss_pred HHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHh-------------------hhhCc
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc--------HHHHHHH--HHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 012108 287 YAALKLLGEMNDSCVKADDITFIGLLSACSHAGL--------VQEGCEL--FSRMEKDFGVTRKLEHYGCMVDLLGRARL 356 (471)
Q Consensus 287 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--------~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (471)
+-+...++.+....-.++....+.++..|+..=+ -+++.+. .+++.. .-...+...-..++......+-
T Consensus 608 ~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~-~l~~s~~Y~p~~~L~~~~~~~l 686 (877)
T KOG2063|consen 608 KLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD-FLESSDLYDPQLLLERLNGDEL 686 (877)
T ss_pred chhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH-HhhhhcccCcchhhhhccchhH
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 357 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
+++-.-++.+++ .+......++..+ ++++.|........+ .+.++...|..+++.|
T Consensus 687 ~ee~aill~rl~--khe~aL~Iyv~~L---~d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 687 YEERAILLGRLG--KHEEALHIYVHEL---DDIDAAESYCLPQYE-SDKTNKEIYLTLLRIY 742 (877)
T ss_pred HHHHHHHHhhhh--hHHHHHHHHHHHh---cchhHHHHHHHHhcc-CCCcccHHHHHHHHHH
No 419
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=61.41 E-value=1.5e+02 Score=28.00 Aligned_cols=54 Identities=6% Similarity=0.008 Sum_probs=25.2
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 012108 96 MKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYT 149 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 149 (471)
..+++.+...+......+++++...+...-...+...+..+++......+.++.
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 333444444444455555555555555444444444444444444444444443
No 420
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.93 E-value=1.2e+02 Score=27.12 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=27.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhH
Q 012108 277 ILGLALHGYGYAALKLLGEMNDSCVKADDI---TFIGLLSACSHAGLVQEGCELFSRME 332 (471)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (471)
.-+-.+.|+..+|.+.++.+.+. .|-.. .-..++.+|....-+.+...++-+.-
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334567777777777666543 22111 12335566655555555555544443
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.65 E-value=70 Score=24.08 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 391 IGDRVAKMVCAKSNYL-SDGELMMFANLYASCGQWEEANRWRNM 433 (471)
Q Consensus 391 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (471)
.+..+|+.|...+.-- .+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8888898888765431 566777888889999999999998875
No 422
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.46 E-value=76 Score=24.64 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 357 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
..++.+.+++.+.+++..= ..++..+...++.-.|..+++++.+.+|..+..|.+.-++.+...|-
T Consensus 5 ~~~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 5 LEDAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3455666666655444332 23455566666778888888888888888666666655555555554
No 423
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.05 E-value=1.2e+02 Score=26.71 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=26.4
Q ss_pred CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC---------------CHHHHHHHHHHhhhCCCc
Q 012108 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG---------------QWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~~ 440 (471)
+.++|...|++..+.+. ......+. .+...| +...|...+......+..
T Consensus 206 d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 55666666666666654 23333333 333333 566666666666555544
No 424
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.95 E-value=71 Score=25.58 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=24.4
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHhhcCCch
Q 012108 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVIHQDLE 390 (471)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 390 (471)
.|...+..-. .++..+...++.-.|.++++.+ +...+..|...-+..+...|-+.
T Consensus 20 ~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 20 RNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred cCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4555443322 3333333344444555555555 22233444444444555555443
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.82 E-value=1.3e+02 Score=26.92 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCChHHHHHHHH
Q 012108 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT--SVLSACANLGSLETGARIHV 228 (471)
Q Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~ 228 (471)
.--+.+|+++|++..+....+|+.- ..+...|. ..+.+.+++ .+..+|- .+..+..+.|+..+|.+.++
T Consensus 229 a~Ti~~AE~l~k~ALka~e~~yr~s-qq~qh~~~------~~da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~K~~R 299 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAGETIYRQS-QQCQHQSP------QHEAQLRRD--TNVLVYIKRRLAMCARKLGRLREAVKIMR 299 (556)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhH-HHHhhhcc------chhhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3446677888887766554454411 11111121 122233322 2333332 34445567888889988888
Q ss_pred HHHHcCC-CCchhHHHHHHHHHHhcCChHHHHHHH---hcCCCC
Q 012108 229 YATDNGL-ASNPHATTALIDMYAKCGSIEQSLEVF---YKSQVK 268 (471)
Q Consensus 229 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~ 268 (471)
++.+.-. -.-..+...|+.++....-+.+...++ +++..|
T Consensus 300 DL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislP 343 (556)
T KOG3807|consen 300 DLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLP 343 (556)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 8765421 111233456777777766665555554 444444
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.79 E-value=40 Score=27.66 Aligned_cols=37 Identities=11% Similarity=-0.043 Sum_probs=28.1
Q ss_pred CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 368 PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 368 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
...|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777788888888777777777766
No 427
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=59.19 E-value=1.4e+02 Score=26.91 Aligned_cols=82 Identities=18% Similarity=0.009 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHHhcCC---CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHH
Q 012108 321 VQEGCELFSRMEKDFGV---TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAK 397 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 397 (471)
.+.|.+.|+........ ..++.....++....+.|+.+.-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 34455555555541111 223444444555555555544444444444333455555556666655666666666666
Q ss_pred HHHHc
Q 012108 398 MVCAK 402 (471)
Q Consensus 398 ~~~~~ 402 (471)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 66553
No 428
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.81 E-value=37 Score=20.29 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=22.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012108 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313 (471)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 313 (471)
.+.|-.+++..++++|...|+..++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777766666554
No 429
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.58 E-value=12 Score=33.29 Aligned_cols=87 Identities=16% Similarity=0.107 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 012108 354 ARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWR 431 (471)
Q Consensus 354 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (471)
.|.++.|++.|... ...| ....|..-.+++.+.+....|++-+...++.+++ +..-|-.-..+..-.|+|++|...+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHHH
Confidence 44455555555544 2222 2334444445555555555555555555555555 4444444444555555555555555
Q ss_pred HHhhhCCCcc
Q 012108 432 NMMNDTGIVK 441 (471)
Q Consensus 432 ~~m~~~~~~~ 441 (471)
....+.++.+
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 5555555443
No 430
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=57.99 E-value=35 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=14.1
Q ss_pred CCHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 012108 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIG 121 (471)
Q Consensus 90 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 121 (471)
.+.+++.++++.++...+.+|.....++...|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33444444444444444444444444444443
No 431
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.98 E-value=26 Score=22.41 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=15.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 308 FIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
-..++.++...|++++|.++++.+.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456666666666666666666554
No 432
>PRK10941 hypothetical protein; Provisional
Probab=57.96 E-value=1.3e+02 Score=26.34 Aligned_cols=74 Identities=8% Similarity=-0.111 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012108 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348 (471)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 348 (471)
+.+-.+|.+.++++.|+++.+.+..-. +.++.-+.--.-.|.+.|.+..|..=++...+.+.-.|+.......+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 344445556666666666666665531 22233343344445566666666665555555333334444333333
No 433
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.96 E-value=1.2e+02 Score=25.83 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHH
Q 012108 182 SQLYIEVVDLFDEM 195 (471)
Q Consensus 182 ~~~~~~a~~~~~~m 195 (471)
.+.+++|-++|.+.
T Consensus 27 ~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 27 SNKYEEAAELYERA 40 (288)
T ss_pred CcchHHHHHHHHHH
Confidence 34566666666553
No 434
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=57.54 E-value=18 Score=28.95 Aligned_cols=36 Identities=6% Similarity=-0.196 Sum_probs=14.3
Q ss_pred cchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccC
Q 012108 24 SSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR 59 (471)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 59 (471)
+..-.|.++++.+.+.++..+..|-..-+..+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333344444444444443333333333333333333
No 435
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.42 E-value=1.8e+02 Score=27.47 Aligned_cols=101 Identities=14% Similarity=-0.063 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHH
Q 012108 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280 (471)
Q Consensus 201 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 280 (471)
..+......++..+ .|+...+..+++.+...+...+......++... ......+......+++++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~-------------~~~~d~~~~~~~~~isa~ 237 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKR-------------AARYDKDGDEHYDLISAL 237 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhh-------------hhccCCCccHHHHHHHHH
Confidence 44444444444432 677777777777665432122222222111110 000111222344445555
Q ss_pred Hh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 012108 281 AL---HGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316 (471)
Q Consensus 281 ~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 316 (471)
.+ .++++.|+.++..|...|..|....-..+..++-
T Consensus 238 ~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 238 HKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44 4788888888888888887776554444444433
No 436
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=56.05 E-value=21 Score=31.30 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=19.9
Q ss_pred cCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433 (471)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (471)
.|+.++|.++|+.++...|. ++..+..++.......+.-+|-.+|-+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred ccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 34444444444444444444 444444444433333334444333333
No 437
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.85 E-value=43 Score=23.73 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 392 GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433 (471)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (471)
-++.+++....+....|.....|+..|.+.|+.+.|.+-|+.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 344555555555444566666677777777777777666654
No 438
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.77 E-value=61 Score=23.59 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKA 197 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 197 (471)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777778888877777665
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.69 E-value=27 Score=30.68 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV 207 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 207 (471)
-||.-|....+.||+++|++++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4667778888888888888888888877765444444
No 440
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.23 E-value=68 Score=28.73 Aligned_cols=56 Identities=9% Similarity=-0.026 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWR 431 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (471)
.|+.-..+-.-.|++..++.-..+++..+|. ....|..=+.++....++++|..+.
T Consensus 121 LY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eLe~~~~a~nw~ 176 (390)
T KOG0551|consen 121 LYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLELERFAEAVNWC 176 (390)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3433333334444555555555555555554 4444444444444444444444333
No 441
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.95 E-value=1.6e+02 Score=26.56 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHHhcCC------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 012108 269 DVFCWNAMILGLALHGY------------GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG 336 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 336 (471)
|+.+|-.++..--..-. .+.-+.++++..+.+ +-+......++..+.+..+.+...+-|+++.. .
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~--~ 94 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF--K 94 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--H
Confidence 66777777654333211 234455666666652 23445556666666666677777777777766 2
Q ss_pred CCCChhHHHHHHHHHhh---cCCHHHHHHHHHh
Q 012108 337 VTRKLEHYGCMVDLLGR---ARLLDRAIELIEA 366 (471)
Q Consensus 337 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 366 (471)
.+-+...|...++.... .-.++....+|.+
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 33356666666654433 1234444444433
No 442
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=54.75 E-value=40 Score=21.82 Aligned_cols=52 Identities=8% Similarity=-0.076 Sum_probs=40.7
Q ss_pred CCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhcc
Q 012108 6 VHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSL 58 (471)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 58 (471)
+.|+...++.++...+.-.-.+.+...+++..+.|. -+..+|..-++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 457778889999999988889999999999999884 5677777777777664
No 443
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.88 E-value=77 Score=24.45 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 357 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|. +...-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~-n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPD-NEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHH
Confidence 356666777665 2233334455667899999999999999999999 88888888888877654
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.86 E-value=56 Score=28.17 Aligned_cols=53 Identities=8% Similarity=0.038 Sum_probs=25.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcC----CCCChhHHHHHHHHHhhcCCHHHHHH
Q 012108 310 GLLSACSHAGLVQEGCELFSRMEKDFG----VTRKLEHYGCMVDLLGRARLLDRAIE 362 (471)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~ 362 (471)
.+..-|...|++++|.++|+.+...+. ..+...+...+..++.+.|+.+....
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555666666666666666543211 11223333444444445555544443
No 445
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.94 E-value=2e+02 Score=26.85 Aligned_cols=55 Identities=4% Similarity=-0.069 Sum_probs=31.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--ccCChHHHHHHHHHHHHc
Q 012108 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYL--TVTSVLSACA--NLGSLETGARIHVYATDN 233 (471)
Q Consensus 178 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 233 (471)
.+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777777765 444443 2333333332 345666777777766544
No 446
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=52.57 E-value=58 Score=20.83 Aligned_cols=49 Identities=6% Similarity=-0.186 Sum_probs=26.0
Q ss_pred HhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHH-----hccCCHhHHHHHh
Q 012108 20 AGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY-----GSLRCIDDAFKVF 68 (471)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~ 68 (471)
+...|++-+|.++++.+=.....+....+..+|... .+.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345677777777777765433333444555554433 2456666666543
No 447
>PRK09462 fur ferric uptake regulator; Provisional
Probab=52.37 E-value=31 Score=26.84 Aligned_cols=59 Identities=10% Similarity=-0.000 Sum_probs=37.9
Q ss_pred cccCCCCCcccHHHHHHHHhhc-cchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCH
Q 012108 2 QELGVHADNYSFPLLLKAAGIL-SSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61 (471)
Q Consensus 2 ~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 61 (471)
++.|++++..- ..++..+... +..-.|.++++.+.+.++..+..|--.-+..+...|-+
T Consensus 9 ~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 9 KKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34566655433 3455555543 45778888998888887666666655566777777643
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.30 E-value=70 Score=27.57 Aligned_cols=58 Identities=9% Similarity=-0.076 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHcC-----CCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 377 GALLSACVIHQDLEIGDRVAKMVCAKS-----NYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
..+...|...|++++|.++|+.+...- ..+...+...+..++.+.|+.+....+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566777777777777777774331 1223445556667777778877776655444
No 449
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.25 E-value=3.4e+02 Score=29.35 Aligned_cols=120 Identities=10% Similarity=0.055 Sum_probs=60.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHhHHHHHHHH
Q 012108 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----LEHYGCMVDLLGRARLLDRAIELIEAMPFE-PTESILGALLSA 382 (471)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~ 382 (471)
|..+++.+-+.+-.+.+.++-..+.+ ..+++ ..+++.+.......|.+-+|...+-.-+.. --......++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 55566666777777777777666666 33332 344555666666667777666655443210 011233444444
Q ss_pred HhhcCCch------------HHHH-HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 012108 383 CVIHQDLE------------IGDR-VAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR 429 (471)
Q Consensus 383 ~~~~g~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 429 (471)
++..|.++ +... +++..-+..+--.+..|..|--.+...++|.+|-.
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 44555433 2333 33333333443123334444444456667666544
No 450
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=52.15 E-value=32 Score=30.30 Aligned_cols=81 Identities=4% Similarity=-0.044 Sum_probs=59.8
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHH-HHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHH
Q 012108 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGA-LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412 (471)
Q Consensus 336 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (471)
.+..|+..|...+....+.|.+.+...+|.+. ...| ++..|.. ...-+...++++.+..+|.+.+..+++ +|..|.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHH
Confidence 45567778877777667777788888888776 3334 5556643 233456788999999999999999999 898888
Q ss_pred HHHHH
Q 012108 413 MFANL 417 (471)
Q Consensus 413 ~l~~~ 417 (471)
...+.
T Consensus 181 eyfr~ 185 (435)
T COG5191 181 EYFRM 185 (435)
T ss_pred HHHHH
Confidence 77664
No 451
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.07 E-value=17 Score=27.47 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=23.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012108 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213 (471)
Q Consensus 180 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 213 (471)
...|.-.+|.++|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456667899999999999988875 5555544
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.83 E-value=20 Score=27.11 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=25.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012108 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314 (471)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 314 (471)
....|.-.+|..+|.+|.+.|-+||. ++.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34557778899999999999999875 5556554
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.76 E-value=1.2e+02 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=16.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHH
Q 012108 312 LSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3457778888888888887765
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.46 E-value=1e+02 Score=25.01 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhh
Q 012108 321 VQEGCELFSRMEKDFGVTRK-LEHY-----GCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI 385 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 385 (471)
.+.|+.+|+.+.++...+-+ .... ...+..|.+.|.+++|.+++++.-..|+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 56677777777764222111 1111 12344577888888888888887335555554444444333
No 455
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.33 E-value=34 Score=30.07 Aligned_cols=38 Identities=32% Similarity=0.265 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 309 (471)
-|+..|..-.+.|+.++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35677777788888888888888888777664444443
No 456
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.92 E-value=2.1e+02 Score=26.61 Aligned_cols=58 Identities=9% Similarity=0.127 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhc------cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012108 140 SWNSLILAYTNAGEMEKAGEMFKKM------LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197 (471)
Q Consensus 140 ~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 197 (471)
.+.-+.+.|..+|+++.|.+.|.+. .+..+..|-.+|....-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566778888899999999988885 223455677777777778888888777777665
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.55 E-value=94 Score=30.76 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=24.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcH
Q 012108 275 AMILGLALHGYGYAALKLLGEMNDS--CVKADDITFIGLLSACSHAGLV 321 (471)
Q Consensus 275 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~ 321 (471)
+|+.+|...|++..+.++++..... |-+.-...++..++...+.|++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555666666666666666555543 1122223455555555555544
No 458
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.19 E-value=1.6e+02 Score=25.13 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=75.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHhhcCCH
Q 012108 280 LALHGYGYAALKLLGEMNDSCVKADDIT-FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLE-HYGCMVDLLGRARLL 357 (471)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 357 (471)
|....+++.|+..|.+.+. +.|+..+ |..=+..+.+..+++.+..=-....+ +.|+.. ..-.+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 4455678899998888777 4677744 45567777888889888877777765 455533 333455556667777
Q ss_pred HHHHHHHHhC-------CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHH
Q 012108 358 DRAIELIEAM-------PFEPTESILGALLSACVIHQDLEIGDRVAKMV 399 (471)
Q Consensus 358 ~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (471)
++|+..+.+. ++.|-......|..+--..-...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7777776665 45555667777776644444555666666554
No 459
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=49.83 E-value=85 Score=21.75 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=35.3
Q ss_pred HHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHH
Q 012108 129 IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEV 188 (471)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 188 (471)
+++.+...++.+-.-.-..-.+....++|..+++.++.++..+|..+..++...|...-|
T Consensus 19 ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 19 IMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 344444444444444434444556677777777777777777777777776655544433
No 460
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.28 E-value=42 Score=29.62 Aligned_cols=78 Identities=6% Similarity=-0.046 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH-HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHH
Q 012108 302 KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC-MVDLLGRARLLDRAIELIEAM-PFEP-TESILGA 378 (471)
Q Consensus 302 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 378 (471)
.-|+..|...+.-..+.|.+.+.-.++.++.+ ..|.++..|-. .-.-|.-.++++.+..+|... ...| ++..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~--khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLT--KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34555566666655667788888889998887 34455555532 222345678999999999876 4444 4556655
Q ss_pred HHH
Q 012108 379 LLS 381 (471)
Q Consensus 379 l~~ 381 (471)
..+
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 544
No 461
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.08 E-value=91 Score=21.87 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=15.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHH
Q 012108 311 LLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
+.......|++++|.+.+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445566777777777777765
No 462
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.61 E-value=40 Score=18.68 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 012108 410 ELMMFANLYASCGQWEEANRWRN 432 (471)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~ 432 (471)
.+..++-.+...|++++|+.+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45667788889999999999944
No 463
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.55 E-value=1.3e+02 Score=23.35 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=8.2
Q ss_pred HhccCcHHHHHHHHHHhHH
Q 012108 315 CSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~ 333 (471)
+.+.++.-.|.++++.+.+
T Consensus 30 L~~~~~~~sAeei~~~l~~ 48 (145)
T COG0735 30 LLEADGHLSAEELYEELRE 48 (145)
T ss_pred HHhcCCCCCHHHHHHHHHH
Confidence 3333333444444444444
No 464
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=47.38 E-value=93 Score=21.49 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012108 225 RIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266 (471)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (471)
++|+.....|+..|+.+|..+++.+.-.=..+...++++.+.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777888888888877776666555555556555443
No 465
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=47.26 E-value=77 Score=27.50 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=44.0
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
..+-.++...++++.|.+..++.+..+|. ++.-+.--+-+|.+.|...-|++-++...+.-+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 33445567777888888888888888877 777777777777787777777776666544433
No 466
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.03 E-value=37 Score=21.97 Aligned_cols=48 Identities=10% Similarity=-0.005 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012108 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250 (471)
Q Consensus 202 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (471)
|+...++.++...++..-.+.+...+.++.+.| ..+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344444555555555555555555555555554 233444444443333
No 467
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.20 E-value=1.8e+02 Score=28.98 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHhCCCHH------HHHHHHHhc-cccChHHHHHHHHH
Q 012108 112 IMISGYARIGKIHSARYIFDKVPAKD------VVSWNSLILAYTNAGEME------KAGEMFKKM-LVKNVITWNTMVTG 178 (471)
Q Consensus 112 ~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~------~A~~~~~~~-~~~~~~~~~~l~~~ 178 (471)
.++.+|..+|++..+.++++.....+ ...++..++-..+.|.++ .|.+.++.. ..-|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67777777777777777777663321 234555566666666543 333444333 33355666666655
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 012108 179 YLRSQLYIEVVDLFDEMK 196 (471)
Q Consensus 179 ~~~~~~~~~a~~~~~~m~ 196 (471)
....-+-...+-++.+++
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 444333333333444433
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.97 E-value=60 Score=23.81 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=32.6
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 425 (471)
++..+...+..-.|.++++.+.+.+|.++..|....++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44445555666778888888888877777777777777777766543
No 469
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=45.80 E-value=1.1e+02 Score=28.80 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=29.4
Q ss_pred HHhCCCCCCH--hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC
Q 012108 364 IEAMPFEPTE--SILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406 (471)
Q Consensus 364 ~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 406 (471)
|....++|.. .++..-+..+.+.+++..|-.+.+++++.+|.|
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 4444556643 356667777889999999999999999998873
No 470
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.16 E-value=55 Score=24.02 Aligned_cols=48 Identities=8% Similarity=-0.062 Sum_probs=37.3
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHh
Q 012108 15 LLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62 (471)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 62 (471)
.++..+...+..-.|.++++.+.+.++..+..|-...++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 466777777777889999999999887777777667778888887543
No 471
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=44.99 E-value=1.1e+02 Score=21.45 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=18.6
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 396 AKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
++...+.+|. |......++..+...|++++|++.+-++.+.
T Consensus 11 l~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 11 LEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334444444 4444455555555555555555544444443
No 472
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=44.96 E-value=2.4e+02 Score=25.60 Aligned_cols=133 Identities=10% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 012108 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223 (471)
Q Consensus 144 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 223 (471)
+.+.+++.++-+.+..+-+.+..--......++.++-...=.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHcCCCCchhHHHHHH-HHHHhcCChHHHHHHHhcCCCCC-hhhHHHHHH
Q 012108 224 ARIHVYATDNGLASNPHATTALI-DMYAKCGSIEQSLEVFYKSQVKD-VFCWNAMIL 278 (471)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~ 278 (471)
...+..+.+.....+..+...+. +.+....+.+....+++++-..+ ...|+.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 473
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=44.92 E-value=78 Score=22.11 Aligned_cols=28 Identities=14% Similarity=0.421 Sum_probs=12.0
Q ss_pred CHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 012108 91 QMDHAMKLIDLMPLKDVTSFNIMISGYA 118 (471)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 118 (471)
+.+++.++++.+....+.+|..+..++.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 3344444444444444444444444443
No 474
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.61 E-value=2.1e+02 Score=25.49 Aligned_cols=73 Identities=10% Similarity=0.134 Sum_probs=38.8
Q ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHh----------cCCHHHHHHHHhhcCCCChhhHHH
Q 012108 74 KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYAR----------IGKIHSARYIFDKVPAKDVVSWNS 143 (471)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~~~~~~~ 143 (471)
|.-.++..+.-.+.+.=.+...+.+++.+... +.-|..++..|+. .|++....++++.-+..|.....+
T Consensus 276 PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp~tdi~~~l~ 354 (370)
T KOG4567|consen 276 PQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQNYPTTDISKMLA 354 (370)
T ss_pred ccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCCHHHHHH
Confidence 55555555555555555666666666665432 2224444444442 266666666666665555544444
Q ss_pred HHHH
Q 012108 144 LILA 147 (471)
Q Consensus 144 l~~~ 147 (471)
+.+.
T Consensus 355 ~A~~ 358 (370)
T KOG4567|consen 355 VADS 358 (370)
T ss_pred HHHH
Confidence 4433
No 475
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.52 E-value=3.9e+02 Score=27.83 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=30.5
Q ss_pred HHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012108 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196 (471)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 196 (471)
..|...|++++|.++-..-+..=...+..-+..+.+.+++..|-++|.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 456777888887776655311111223333455667777888888777763
No 476
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.19 E-value=2.4e+02 Score=28.05 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=22.0
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhcccc--ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 128 YIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK--NVITWNTMVTGYLRSQLYIEVVDLFDE 194 (471)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 194 (471)
.++.+.+-.+...-.-++..|.+.|-.+.|.++.+.+-.. ...-|..-+..+.+.|+...+-.+.+.
T Consensus 395 ~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 395 ELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333333334444455555566666666666655554221 112233334444445554444443333
No 477
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.19 E-value=3.1e+02 Score=26.55 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=9.9
Q ss_pred CChHHHHHHHHHHHHcCCCC
Q 012108 218 GSLETGARIHVYATDNGLAS 237 (471)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~ 237 (471)
++.+.|..++..+...|..|
T Consensus 257 ~d~~~Al~~l~~ll~~Gedp 276 (472)
T PRK14962 257 GDVKRVFTVLDDVYYSGKDY 276 (472)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555555555555544333
No 478
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.00 E-value=53 Score=17.72 Aligned_cols=27 Identities=4% Similarity=0.092 Sum_probs=17.8
Q ss_pred CchHHHHHHHHHHHcCCCCCchhHHHHHH
Q 012108 388 DLEIGDRVAKMVCAKSNYLSDGELMMFAN 416 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 416 (471)
.++.|..+|++.+...| ++.+|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp--~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP--EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC--CchHHHHHHH
Confidence 45778888888877654 4666655443
No 479
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=43.45 E-value=51 Score=24.44 Aligned_cols=49 Identities=10% Similarity=-0.073 Sum_probs=36.9
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHh
Q 012108 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCID 62 (471)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 62 (471)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 4677777777778999999999999888888776666678788777443
No 480
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=42.98 E-value=1.1e+02 Score=21.17 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=15.3
Q ss_pred CCHhHHHHHhcccCCCCcccHHHHHHHHHcCC
Q 012108 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCG 90 (471)
Q Consensus 59 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (471)
.+.+.|..+++.+..++..+|....+++-..|
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34445555555444444445554444444333
No 481
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.90 E-value=2.4e+02 Score=25.07 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhccCcHHHH
Q 012108 306 ITFIGLLSACSHAGLVQEG 324 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a 324 (471)
.+|..|+.+++.+|+.+..
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3577888888888887654
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=42.36 E-value=60 Score=24.06 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 012108 377 GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424 (471)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 424 (471)
..++......+..-.|.++++.+.+.++.++..|...-++.+.+.|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345666667777888999999999988887777776666666666653
No 483
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=41.59 E-value=2.9e+02 Score=25.54 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=25.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHH
Q 012108 177 TGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA-NLGSLETGARIHVYA 230 (471)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 230 (471)
..+.+.|-+..|+++.+-+...+..-|.......|+.++ +.++++-..++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 345555566666665555555433223333334444332 444454444444443
No 484
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.29 E-value=2.6e+02 Score=24.95 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 291 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
++++.+...++.|.-..|..+.-.+.+.=.+...+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555566666666666666655555555566666666666654
No 485
>PF15469 Sec5: Exocyst complex component Sec5
Probab=40.93 E-value=88 Score=25.37 Aligned_cols=104 Identities=11% Similarity=-0.011 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC--CchhHHHHHHHHH
Q 012108 342 EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL--SDGELMMFANLYA 419 (471)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 419 (471)
..+..++..-.+..++..+..++++.. .....-.-+.-+.+.|+++.+...+.++...--.. ....+..+..-..
T Consensus 58 ~~~~pll~~~~k~~~l~~~l~~l~r~~---flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve 134 (182)
T PF15469_consen 58 SVFKPLLERREKADKLRNALEFLQRNR---FLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVE 134 (182)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q ss_pred hc----------------CCHHHHHHHHHHhhhCCCcccCcceEE
Q 012108 420 SC----------------GQWEEANRWRNMMNDTGIVKTAGSSVI 448 (471)
Q Consensus 420 ~~----------------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 448 (471)
.. ...++..+++..+.+.++..+|.+.|+
T Consensus 135 ~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 135 KIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCCHHHHHH
No 486
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.76 E-value=2.2e+02 Score=24.02 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC---ChhHH--HHHHHHHhhcCCHHHHHHHHHhCC---CCCC
Q 012108 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR---KLEHY--GCMVDLLGRARLLDRAIELIEAMP---FEPT 372 (471)
Q Consensus 301 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~---~~p~ 372 (471)
+.+...-++.|+--|.-...+.+|.+.|..-. |+.| +...+ ..-|......|+.++|.+....+. +.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 45566666666655555555555555544332 3433 22222 334555677788888887777762 2223
Q ss_pred HhHHHHHH----HHHhhcCCchHHHHHHHH
Q 012108 373 ESILGALL----SACVIHQDLEIGDRVAKM 398 (471)
Q Consensus 373 ~~~~~~l~----~~~~~~g~~~~a~~~~~~ 398 (471)
...+-.|. --..+.|..++|+++++.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 21221111 123456666666666654
No 487
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.31 E-value=2.4e+02 Score=24.17 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHH
Q 012108 174 TMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA-NLGSLETGARIHVYAT 231 (471)
Q Consensus 174 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 231 (471)
.++..+-+.|+++++...++++...+...+..--+.+-.+|- ..|....+.+++....
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 355666777888888888888877766666655555444442 2233444555554443
No 488
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=39.60 E-value=1.6e+02 Score=22.12 Aligned_cols=58 Identities=19% Similarity=0.082 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHH-HHHHHHHhhcCCchHHHHHHHH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESIL-GALLSACVIHQDLEIGDRVAKM 398 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~ 398 (471)
..+..++..++.=.|..+.|.++++..+..++-... .-++..|.+..+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445556666666667777777777766544443333 3456666666665555554443
No 489
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.55 E-value=3.5e+02 Score=25.96 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=9.6
Q ss_pred ccCcHHHHHHHHHHhHH
Q 012108 317 HAGLVQEGCELFSRMEK 333 (471)
Q Consensus 317 ~~~~~~~a~~~~~~~~~ 333 (471)
..+++.+|...+++-.+
T Consensus 457 ~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 457 KQNDLNEAKRFLRETLK 473 (629)
T ss_pred HhccHHHHHHHHHHHHh
Confidence 45666666655555544
No 490
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.54 E-value=86 Score=25.86 Aligned_cols=49 Identities=8% Similarity=-0.126 Sum_probs=28.3
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhccCCch-hHHHHHHHHHhccCCHh
Q 012108 13 FPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHV-YVQTALLKMYGSLRCID 62 (471)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 62 (471)
.+.++..|...|+++.|.++|.-+++.. +.|. ..|..-+..+.+.+.-.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~ 93 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQN 93 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcc
Confidence 4566677777777777777777777653 2333 23444444444444333
No 491
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=39.03 E-value=1.1e+02 Score=20.22 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHhhhC
Q 012108 422 GQWEEANRWRNMMNDT 437 (471)
Q Consensus 422 g~~~~A~~~~~~m~~~ 437 (471)
|....|.+-|.+|...
T Consensus 59 G~L~~aL~ey~~~~g~ 74 (82)
T PF11123_consen 59 GELAAALEEYKKMVGA 74 (82)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3445566667766543
No 492
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.77 E-value=82 Score=29.73 Aligned_cols=105 Identities=8% Similarity=-0.051 Sum_probs=73.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcC
Q 012108 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIG-LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355 (471)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (471)
+..+...+.++.|..++.+.++. .|+...|.. =..++.+.+++..|+.=..++.+. -+.....|-.-..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 44566778999999999999985 776655544 347888999999998877777771 2222444444445556667
Q ss_pred CHHHHHHHHHhC-CCCCCHhHHHHHHHHHhh
Q 012108 356 LLDRAIELIEAM-PFEPTESILGALLSACVI 385 (471)
Q Consensus 356 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 385 (471)
.+.+|+..|+.. .+.|+..-....+.-|-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 788888888776 577877777666665543
No 493
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=37.85 E-value=3.6e+02 Score=25.56 Aligned_cols=64 Identities=9% Similarity=-0.026 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
-...|+.-|...|+..+|.+.++++---... ...++..++.+..+.|+-..-+.+++..-+.|.
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 3456888899999999999998876443333 456777889999999998888888887766554
No 494
>PHA00425 DNA packaging protein, small subunit
Probab=36.72 E-value=1.3e+02 Score=20.18 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 012108 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSA 382 (471)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 382 (471)
+.+.|..++..+.. .-+.++..||++...+.+.+ |.-.+++||..+..-+..+
T Consensus 14 DTE~a~~mL~DL~d--dekRtPQLYnAIgKlL~RHk--------F~isKl~pD~~iLg~la~~ 66 (88)
T PHA00425 14 DTEMAQRMLADLKD--DEKRTPQLYNAIGKLLDRHK--------FQISKLQPDENILGGLAAA 66 (88)
T ss_pred hHHHHHHHHHHhcC--ccccChHHHHHHHHHHHHhc--------ccccccCCcHHHHHHHHHH
Confidence 44566666666665 44566777887777665442 3333567777776555544
No 495
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.51 E-value=1.6e+02 Score=21.06 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 012108 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (471)
..+.+++....+....+.....|.-.|++.|+.+.|.+-|+.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 344455555444444444555566666667776666666654
No 496
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.47 E-value=1.8e+02 Score=21.73 Aligned_cols=17 Identities=12% Similarity=-0.105 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHH
Q 012108 178 GYLRSQLYIEVVDLFDE 194 (471)
Q Consensus 178 ~~~~~~~~~~a~~~~~~ 194 (471)
++-..|+.++|+..|+.
T Consensus 109 Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 109 ALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHTT-HHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHH
Confidence 44556777777766654
No 497
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.08 E-value=4.3e+02 Score=25.88 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------------
Q 012108 276 MILGLALHGYGYAALKLLGEMNDSCVKADDI-TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL------------- 341 (471)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------- 341 (471)
++.-|.+.++.++|..++..|.-......-. ..+.+.+.+.+..--++.+..++.+...+-.+..+
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Q ss_pred -hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHH
Q 012108 342 -EHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDR 394 (471)
Q Consensus 342 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 394 (471)
..-..+...+.+.+++++|+.+--+++ +...|.-+-......|+...|..
T Consensus 494 ~~~aRRfFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 494 SDLARRFFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhhc
No 498
>PRK09857 putative transposase; Provisional
Probab=36.00 E-value=3e+02 Score=24.49 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
.++.-....++.++-.++++...+..|. ......+++.-+.+.|.-+++.++..+|...|...+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~-~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPK-HKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444334566666666777666665544 555666777777777777778888888887777644
No 499
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.71 E-value=2.8e+02 Score=23.71 Aligned_cols=132 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHhcCCCC--------------ChhhHHHHHHHHHhcCC--HHHHHHHHhhcCCCChhhH
Q 012108 78 AWNSMLDAFASCGQMDHAMKLIDLMPLK--------------DVTSFNIMISGYARIGK--IHSARYIFDKVPAKDVVSW 141 (471)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 141 (471)
.....+..|...-++.-|....+++.+| |.....-++......+- .+++++..-...+-|-..-
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQa 211 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQA 211 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHH
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012108 142 NSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210 (471)
Q Consensus 142 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 210 (471)
..-+.+....-.+-.+..+|+-.-.|.+.....++..|.+.+ +++|.+++.++-+.|..|....-+.+
T Consensus 212 lNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~-~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRN-IDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhcc-HHHHHHHHHHHHHcCCCHHHHHHHHH
No 500
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=35.61 E-value=3e+02 Score=23.98 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH-----HHHHHHHHHhHHhcCCCCChhHHHH
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV-----QEGCELFSRMEKDFGVTRKLEHYGC 346 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~ 346 (471)
....++..+.+.+....|..+.+.+... +-=......++......... ......+....+ -+...+. |..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~--ll~~f~~-~l~ 158 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVIS--LLQEFPE-YLE 158 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHH--HHHcCcc-hHH
Confidence 3455666666666777777776666542 21123333333332211111 112223333322 0111122 333
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC-C-----CchhHHHHHHHHHh
Q 012108 347 MVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY-L-----SDGELMMFANLYAS 420 (471)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~ 420 (471)
++-.|.|.-+...=..+|...+ .| ..++..|.+.|+++.|-.++--+...+.. . +...-..|+.....
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Confidence 3334444444444445555554 33 25667788888888888877666554432 1 12333356777778
Q ss_pred cCCHHHHHHHHHHhhhCCCc
Q 012108 421 CGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~ 440 (471)
.|+|+-+.++.+=+...+..
T Consensus 233 ~~~w~Lc~eL~RFL~~ld~~ 252 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKALDPE 252 (258)
T ss_pred cccHHHHHHHHHHHHHhCcc
Confidence 89999999988877665543
Done!