Query 012108
Match_columns 471
No_of_seqs 577 out of 2698
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 02:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.6E-42 1.9E-46 336.6 40.7 426 8-441 82-583 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.4E-38 8.2E-43 310.8 35.3 409 5-419 112-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-29 6.4E-34 233.8 37.6 372 17-423 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1E-28 3.4E-33 228.9 36.3 351 83-440 6-371 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.1E-29 1.4E-33 235.3 23.3 183 170-353 27-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.7E-29 1.3E-33 235.6 19.0 212 187-421 8-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 2E-25 6.7E-30 214.8 32.1 422 11-440 7-481 (514)
8 2gw1_A Mitochondrial precursor 99.9 9E-26 3.1E-30 217.1 29.0 391 46-440 7-447 (514)
9 3fp2_A TPR repeat-containing p 99.9 3.2E-25 1.1E-29 214.6 30.7 422 11-442 26-496 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.1E-23 3.6E-28 199.2 34.4 329 106-440 25-413 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2.2E-23 7.4E-28 197.0 31.4 299 137-441 25-362 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.6E-22 1.2E-26 193.1 31.9 398 8-412 57-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 3.8E-21 1.3E-25 175.7 32.5 295 107-439 3-337 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.5E-20 5.1E-25 171.7 33.8 322 75-421 2-353 (359)
15 3hym_B Cell division cycle pro 99.9 1.1E-19 3.7E-24 164.0 29.5 284 137-424 21-321 (330)
16 2xm6_A Protein corresponding t 99.9 4.9E-19 1.7E-23 168.8 35.4 376 29-420 26-452 (490)
17 3hym_B Cell division cycle pro 99.9 7.8E-20 2.7E-24 165.0 27.8 271 166-442 19-304 (330)
18 1fch_A Peroxisomal targeting s 99.9 2.2E-20 7.4E-25 171.5 22.9 296 119-435 37-357 (368)
19 2ooe_A Cleavage stimulation fa 99.9 3.6E-18 1.2E-22 164.5 38.6 404 11-440 14-495 (530)
20 1b89_A Protein (clathrin heavy 99.9 3.2E-20 1.1E-24 166.9 22.4 284 57-367 15-308 (449)
21 2xm6_A Protein corresponding t 99.9 4.9E-18 1.7E-22 161.9 39.0 352 73-440 36-435 (490)
22 1xi4_A Clathrin heavy chain; a 99.9 2E-17 6.9E-22 165.6 40.7 381 11-430 986-1377(1630)
23 1b89_A Protein (clathrin heavy 99.8 3.7E-18 1.3E-22 153.6 28.5 277 22-326 15-303 (449)
24 4g1t_A Interferon-induced prot 99.8 2E-18 6.8E-23 164.1 28.1 378 45-448 51-470 (472)
25 1fch_A Peroxisomal targeting s 99.8 7.4E-19 2.5E-23 161.2 24.0 242 89-333 38-313 (368)
26 2ooe_A Cleavage stimulation fa 99.8 1.8E-17 6.2E-22 159.6 34.6 374 8-405 44-495 (530)
27 3mkr_A Coatomer subunit epsilo 99.8 1.6E-17 5.5E-22 146.2 30.1 271 146-431 7-288 (291)
28 4eqf_A PEX5-related protein; a 99.8 8.6E-19 2.9E-23 160.6 22.6 270 139-433 66-352 (365)
29 3cv0_A Peroxisome targeting si 99.8 1.8E-18 6.2E-23 155.8 21.9 276 138-436 21-314 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 2.7E-18 9.1E-23 151.2 21.5 251 176-442 6-269 (291)
31 1xi4_A Clathrin heavy chain; a 99.8 5.8E-16 2E-20 155.3 40.3 346 47-432 987-1340(1630)
32 4eqf_A PEX5-related protein; a 99.8 5.6E-18 1.9E-22 155.2 22.7 256 107-366 65-352 (365)
33 4g1t_A Interferon-induced prot 99.8 3.9E-17 1.3E-21 155.1 26.8 376 9-414 50-470 (472)
34 3cv0_A Peroxisome targeting si 99.8 5.4E-17 1.8E-21 146.1 24.2 254 108-367 22-312 (327)
35 3uq3_A Heat shock protein STI1 99.7 5.6E-16 1.9E-20 134.2 21.3 229 169-438 5-237 (258)
36 3uq3_A Heat shock protein STI1 99.7 3.6E-16 1.2E-20 135.5 19.4 223 138-403 5-237 (258)
37 3e4b_A ALGK; tetratricopeptide 99.7 3.3E-16 1.1E-20 147.0 20.3 378 14-437 7-421 (452)
38 3e4b_A ALGK; tetratricopeptide 99.7 1.8E-15 6.1E-20 142.0 24.8 308 11-333 36-386 (452)
39 2pl2_A Hypothetical conserved 99.7 4.8E-16 1.7E-20 130.7 18.5 196 236-435 2-212 (217)
40 3spa_A Mtrpol, DNA-directed RN 99.7 1.9E-17 6.6E-22 160.8 10.1 147 138-284 127-286 (1134)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.9E-15 6.4E-20 132.3 20.1 241 181-431 17-269 (275)
42 3spa_A Mtrpol, DNA-directed RN 99.7 2.3E-17 7.7E-22 160.4 8.2 151 169-355 127-286 (1134)
43 3u4t_A TPR repeat-containing p 99.7 3.2E-15 1.1E-19 130.7 20.4 253 140-421 5-268 (272)
44 2pl2_A Hypothetical conserved 99.7 6.1E-15 2.1E-19 124.0 19.4 193 168-366 4-210 (217)
45 3u4t_A TPR repeat-containing p 99.7 1.1E-14 3.9E-19 127.2 21.6 228 212-443 11-256 (272)
46 1ouv_A Conserved hypothetical 99.7 5.4E-14 1.9E-18 122.9 25.0 224 168-404 5-253 (273)
47 2ho1_A Type 4 fimbrial biogene 99.6 5E-14 1.7E-18 121.5 23.6 195 208-405 41-241 (252)
48 2h6f_A Protein farnesyltransfe 99.6 2.1E-14 7.1E-19 130.6 22.0 245 170-420 98-365 (382)
49 1ouv_A Conserved hypothetical 99.6 2E-13 6.8E-18 119.3 27.4 225 203-440 5-254 (273)
50 2q7f_A YRRB protein; TPR, prot 99.6 5.3E-15 1.8E-19 126.8 16.5 136 273-412 94-231 (243)
51 2q7f_A YRRB protein; TPR, prot 99.6 6.2E-15 2.1E-19 126.5 16.3 202 238-443 22-228 (243)
52 2ho1_A Type 4 fimbrial biogene 99.6 2.7E-14 9.4E-19 123.2 20.2 200 239-441 37-242 (252)
53 2vq2_A PILW, putative fimbrial 99.6 3.7E-14 1.3E-18 119.9 20.6 197 241-440 10-214 (225)
54 2h6f_A Protein farnesyltransfe 99.6 2.9E-14 1E-18 129.7 20.1 230 205-440 98-351 (382)
55 4a1s_A PINS, partner of inscut 99.6 6.2E-15 2.1E-19 137.2 15.9 264 143-437 53-372 (411)
56 2vq2_A PILW, putative fimbrial 99.6 1.2E-13 4.1E-18 116.8 22.2 207 169-411 8-219 (225)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 2E-14 6.8E-19 125.8 17.0 238 150-396 17-269 (275)
58 3sf4_A G-protein-signaling mod 99.6 1.9E-14 6.4E-19 133.6 17.6 269 137-405 8-339 (406)
59 3ro2_A PINS homolog, G-protein 99.6 1.7E-14 5.8E-19 130.0 16.7 153 286-438 159-333 (338)
60 4e6h_A MRNA 3'-END-processing 99.6 8.8E-12 3E-16 121.0 35.9 392 8-405 64-573 (679)
61 3vtx_A MAMA; tetratricopeptide 99.6 1.2E-13 4.1E-18 112.9 19.1 168 269-440 4-173 (184)
62 3sf4_A G-protein-signaling mod 99.6 2.2E-14 7.6E-19 133.1 15.7 286 106-391 8-365 (406)
63 4abn_A Tetratricopeptide repea 99.6 4.3E-14 1.5E-18 133.5 16.9 209 220-434 84-318 (474)
64 3ulq_A Response regulator aspa 99.6 8.3E-13 2.8E-17 121.5 23.3 159 175-333 109-292 (383)
65 3ulq_A Response regulator aspa 99.6 2.4E-13 8.2E-18 125.1 19.3 286 148-437 22-368 (383)
66 4a1s_A PINS, partner of inscut 99.5 1.7E-13 5.8E-18 127.4 17.8 268 107-405 48-375 (411)
67 4e6h_A MRNA 3'-END-processing 99.5 2.2E-11 7.5E-16 118.2 32.5 413 27-442 49-575 (679)
68 3ro2_A PINS homolog, G-protein 99.5 2.4E-13 8.3E-18 122.4 16.3 135 271-405 184-335 (338)
69 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-13 4.1E-18 123.1 13.8 243 169-437 27-307 (311)
70 2ond_A Cleavage stimulation fa 99.5 6.2E-12 2.1E-16 111.8 24.0 233 169-405 8-273 (308)
71 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5E-16 109.4 26.0 215 221-440 33-273 (308)
72 3as5_A MAMA; tetratricopeptide 99.5 1.8E-12 6.1E-17 105.8 16.4 164 273-440 11-176 (186)
73 3vtx_A MAMA; tetratricopeptide 99.5 3.4E-12 1.2E-16 104.1 17.1 164 239-405 5-173 (184)
74 1hz4_A MALT regulatory protein 99.5 7.9E-11 2.7E-15 107.8 28.1 119 146-264 22-160 (373)
75 3q15_A PSP28, response regulat 99.4 1.2E-10 4.1E-15 106.8 26.9 225 175-400 107-363 (378)
76 3q15_A PSP28, response regulat 99.4 9.4E-11 3.2E-15 107.5 26.2 191 140-333 143-364 (378)
77 3nf1_A KLC 1, kinesin light ch 99.4 2.3E-12 7.7E-17 114.8 14.3 246 138-405 27-310 (311)
78 4gyw_A UDP-N-acetylglucosamine 99.4 5.9E-12 2E-16 123.7 17.7 163 270-436 9-173 (723)
79 4abn_A Tetratricopeptide repea 99.4 7.1E-12 2.4E-16 118.3 17.7 190 203-396 101-315 (474)
80 3as5_A MAMA; tetratricopeptide 99.4 4.7E-11 1.6E-15 97.2 18.4 164 239-405 8-176 (186)
81 4i17_A Hypothetical protein; T 99.4 5E-11 1.7E-15 100.9 18.7 205 202-417 5-223 (228)
82 1hz4_A MALT regulatory protein 99.4 8.1E-11 2.8E-15 107.8 21.2 155 110-264 17-199 (373)
83 4i17_A Hypothetical protein; T 99.3 4.7E-11 1.6E-15 101.1 16.1 196 236-442 4-214 (228)
84 3mv2_B Coatomer subunit epsilo 99.3 3.6E-10 1.2E-14 97.5 21.4 240 147-409 22-288 (310)
85 3edt_B KLC 2, kinesin light ch 99.3 4.4E-11 1.5E-15 104.7 15.7 208 204-436 43-280 (283)
86 4gyw_A UDP-N-acetylglucosamine 99.2 2.3E-10 7.7E-15 112.5 18.1 158 138-297 9-172 (723)
87 2fo7_A Synthetic consensus TPR 99.2 2.8E-10 9.7E-15 87.0 14.6 129 308-439 4-134 (136)
88 1qqe_A Vesicular transport pro 99.2 3.7E-10 1.3E-14 99.4 17.0 131 272-402 119-269 (292)
89 3edt_B KLC 2, kinesin light ch 99.2 1E-09 3.5E-14 95.9 19.3 211 168-402 42-281 (283)
90 3qky_A Outer membrane assembly 99.2 9E-10 3.1E-14 95.3 18.2 189 236-441 12-228 (261)
91 3mv2_B Coatomer subunit epsilo 99.2 4.6E-09 1.6E-13 90.7 21.7 244 176-442 20-287 (310)
92 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.2E-09 7.4E-14 90.5 19.1 183 239-441 4-217 (225)
93 1qqe_A Vesicular transport pro 99.2 2.2E-10 7.5E-15 100.9 12.9 205 219-439 32-271 (292)
94 3qky_A Outer membrane assembly 99.2 9.6E-10 3.3E-14 95.1 16.4 202 202-426 13-250 (261)
95 2uy1_A Cleavage stimulation fa 99.2 2E-08 6.7E-13 94.7 25.6 357 12-401 17-412 (493)
96 4ga2_A E3 SUMO-protein ligase 99.1 1.4E-10 4.6E-15 90.9 8.8 141 278-423 5-149 (150)
97 2pzi_A Probable serine/threoni 99.1 3E-10 1E-14 112.1 11.7 168 215-387 402-582 (681)
98 2fo7_A Synthetic consensus TPR 99.1 3.4E-09 1.2E-13 80.9 14.9 131 272-405 3-135 (136)
99 2vsy_A XCC0866; transferase, g 99.1 2E-09 6.8E-14 104.4 15.7 160 252-415 2-169 (568)
100 3qou_A Protein YBBN; thioredox 99.1 2.6E-09 9E-14 93.6 14.9 171 260-435 107-282 (287)
101 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.6E-13 85.3 17.9 162 269-440 17-200 (212)
102 3urz_A Uncharacterized protein 99.1 2.1E-09 7.1E-14 89.3 13.0 163 240-405 5-189 (208)
103 4ga2_A E3 SUMO-protein ligase 99.0 2.8E-10 9.5E-15 89.1 6.8 129 311-442 3-134 (150)
104 3urz_A Uncharacterized protein 99.0 2.4E-08 8.2E-13 82.8 19.0 160 144-307 10-192 (208)
105 2pzi_A Probable serine/threoni 99.0 3.1E-09 1.1E-13 104.9 14.8 169 250-423 402-583 (681)
106 2r5s_A Uncharacterized protein 99.0 2.1E-09 7.1E-14 86.7 10.9 64 372-435 107-171 (176)
107 2ifu_A Gamma-SNAP; membrane fu 99.0 5.1E-09 1.7E-13 92.8 13.6 155 272-429 78-253 (307)
108 3qou_A Protein YBBN; thioredox 99.0 3.2E-08 1.1E-12 86.6 18.1 161 203-365 116-279 (287)
109 2r5s_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 82.2 13.9 156 242-401 9-172 (176)
110 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.3E-08 4.5E-13 84.8 14.5 129 271-405 7-153 (213)
111 2uy1_A Cleavage stimulation fa 99.0 7.9E-08 2.7E-12 90.6 21.4 366 22-436 6-412 (493)
112 3gyz_A Chaperone protein IPGC; 99.0 2.9E-09 9.8E-14 82.9 9.6 99 341-440 36-136 (151)
113 2ifu_A Gamma-SNAP; membrane fu 99.0 4.5E-09 1.6E-13 93.1 11.9 176 252-440 29-226 (307)
114 3dra_A Protein farnesyltransfe 99.0 6.9E-07 2.3E-11 77.9 25.2 222 185-413 49-298 (306)
115 3dra_A Protein farnesyltransfe 99.0 2.4E-07 8.2E-12 80.8 22.1 219 217-440 46-291 (306)
116 2vsy_A XCC0866; transferase, g 98.9 1.5E-08 5.3E-13 98.1 16.0 147 217-367 2-154 (568)
117 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.5E-08 8.7E-13 83.9 15.0 182 203-405 3-216 (225)
118 3rjv_A Putative SEL1 repeat pr 98.9 1.4E-07 4.8E-12 78.4 19.0 168 157-333 5-196 (212)
119 3u3w_A Transcriptional activat 98.9 3.3E-07 1.1E-11 80.5 22.4 162 275-436 80-265 (293)
120 2qfc_A PLCR protein; TPR, HTH, 98.9 6.7E-08 2.3E-12 85.0 17.7 165 272-436 77-265 (293)
121 2vgx_A Chaperone SYCD; alterna 98.9 3.1E-09 1.1E-13 82.7 7.9 95 343-438 23-119 (148)
122 4gco_A Protein STI-1; structur 98.9 1.6E-08 5.5E-13 76.2 11.0 106 307-415 15-122 (126)
123 1a17_A Serine/threonine protei 98.9 3.6E-08 1.2E-12 78.3 13.7 128 306-436 14-145 (166)
124 4gco_A Protein STI-1; structur 98.9 2.9E-08 9.8E-13 74.8 12.2 101 341-442 13-115 (126)
125 2e2e_A Formate-dependent nitri 98.9 1.1E-08 3.7E-13 82.6 9.8 121 282-405 22-147 (177)
126 2c2l_A CHIP, carboxy terminus 98.9 1E-08 3.4E-13 89.5 9.9 192 239-437 4-199 (281)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.9 8E-08 2.7E-12 79.9 15.1 131 240-373 7-154 (213)
128 2lni_A Stress-induced-phosphop 98.8 5.8E-08 2E-12 73.8 12.7 116 305-423 16-133 (133)
129 1na0_A Designed protein CTPR3; 98.8 7.4E-08 2.5E-12 72.1 12.8 115 305-422 9-125 (125)
130 2vyi_A SGTA protein; chaperone 98.8 6.6E-08 2.3E-12 73.1 12.3 117 305-424 12-130 (131)
131 2xcb_A PCRH, regulatory protei 98.8 1.7E-08 5.8E-13 78.0 8.3 91 346-437 23-115 (142)
132 3u3w_A Transcriptional activat 98.8 1.3E-06 4.5E-11 76.6 20.3 159 244-402 80-266 (293)
133 1p5q_A FKBP52, FK506-binding p 98.8 9.2E-08 3.2E-12 85.7 13.0 127 306-435 148-292 (336)
134 2qfc_A PLCR protein; TPR, HTH, 98.7 5.1E-07 1.7E-11 79.3 17.1 163 240-402 76-266 (293)
135 4f3v_A ESX-1 secretion system 98.7 2.4E-07 8.2E-12 78.9 13.5 185 216-405 18-240 (282)
136 4f3v_A ESX-1 secretion system 98.7 6.7E-07 2.3E-11 76.2 16.1 121 245-367 108-234 (282)
137 3q7a_A Farnesyltransferase alp 98.7 1.7E-05 5.8E-10 70.0 25.2 172 180-356 65-257 (349)
138 3upv_A Heat shock protein STI1 98.7 1E-07 3.5E-12 71.8 9.8 94 344-438 7-102 (126)
139 1hxi_A PEX5, peroxisome target 98.7 9E-08 3.1E-12 71.5 9.2 97 343-440 19-117 (121)
140 2c2l_A CHIP, carboxy terminus 98.7 1.4E-07 4.9E-12 82.2 11.5 93 139-232 5-100 (281)
141 2vgx_A Chaperone SYCD; alterna 98.7 6.4E-08 2.2E-12 75.2 8.1 103 305-410 21-125 (148)
142 3sz7_A HSC70 cochaperone (SGT) 98.7 1.4E-07 4.9E-12 74.8 10.1 109 304-415 10-120 (164)
143 1elw_A TPR1-domain of HOP; HOP 98.7 2.9E-07 9.8E-12 68.0 11.1 94 344-438 7-102 (118)
144 2lni_A Stress-induced-phosphop 98.7 3E-07 1E-11 69.7 11.5 103 338-441 13-117 (133)
145 2fbn_A 70 kDa peptidylprolyl i 98.6 3E-07 1E-11 75.5 12.1 96 342-438 89-187 (198)
146 3gw4_A Uncharacterized protein 98.6 2.2E-07 7.5E-12 76.5 11.3 132 271-402 27-176 (203)
147 1na0_A Designed protein CTPR3; 98.6 2.6E-07 8.7E-12 69.1 10.7 100 341-441 9-110 (125)
148 3gyz_A Chaperone protein IPGC; 98.6 5.7E-07 2E-11 69.8 12.7 102 302-405 32-136 (151)
149 1elw_A TPR1-domain of HOP; HOP 98.6 6.2E-07 2.1E-11 66.2 12.4 109 306-417 5-115 (118)
150 3gw4_A Uncharacterized protein 98.6 1.7E-06 5.7E-11 71.1 16.1 144 119-262 4-170 (203)
151 3upv_A Heat shock protein STI1 98.6 4.3E-07 1.5E-11 68.3 11.4 110 306-418 5-122 (126)
152 3q49_B STIP1 homology and U bo 98.6 2.5E-07 8.7E-12 70.7 10.3 97 341-438 9-107 (137)
153 4gcn_A Protein STI-1; structur 98.6 1.5E-07 5.1E-12 70.9 8.7 91 345-436 12-111 (127)
154 1a17_A Serine/threonine protei 98.6 9.1E-07 3.1E-11 70.0 13.6 128 271-401 14-145 (166)
155 2dba_A Smooth muscle cell asso 98.6 5.7E-07 1.9E-11 69.6 11.9 107 305-415 28-140 (148)
156 2xcb_A PCRH, regulatory protei 98.6 4.4E-07 1.5E-11 69.9 10.7 104 306-412 19-124 (142)
157 2e2e_A Formate-dependent nitri 98.6 4.5E-07 1.6E-11 72.8 11.1 125 315-442 20-149 (177)
158 2kck_A TPR repeat; tetratricop 98.6 5.3E-07 1.8E-11 65.9 10.4 101 341-441 6-110 (112)
159 2vyi_A SGTA protein; chaperone 98.6 2.1E-06 7.2E-11 64.6 14.1 114 139-254 13-129 (131)
160 3q7a_A Farnesyltransferase alp 98.5 1.3E-05 4.6E-10 70.6 20.2 216 216-435 66-329 (349)
161 3sz7_A HSC70 cochaperone (SGT) 98.5 1.1E-06 3.8E-11 69.5 12.2 96 269-367 10-105 (164)
162 2xev_A YBGF; tetratricopeptide 98.5 4.8E-07 1.6E-11 68.3 9.0 94 310-405 7-108 (129)
163 2dba_A Smooth muscle cell asso 98.5 2.5E-06 8.7E-11 65.9 12.8 99 340-439 27-130 (148)
164 4gcn_A Protein STI-1; structur 98.5 1.1E-06 3.6E-11 66.2 10.0 96 308-405 11-115 (127)
165 3dss_A Geranylgeranyl transfer 98.5 3.4E-05 1.2E-09 67.7 20.5 180 169-354 26-240 (331)
166 1wao_1 Serine/threonine protei 98.5 5.3E-07 1.8E-11 84.8 9.6 118 312-432 13-134 (477)
167 3dss_A Geranylgeranyl transfer 98.4 8E-05 2.8E-09 65.3 22.4 160 149-311 40-233 (331)
168 1elr_A TPR2A-domain of HOP; HO 98.4 7.9E-07 2.7E-11 67.0 8.6 111 305-419 4-123 (131)
169 3k9i_A BH0479 protein; putativ 98.4 1.7E-07 5.7E-12 69.6 4.5 62 375-437 29-90 (117)
170 2kck_A TPR repeat; tetratricop 98.4 2.3E-06 8E-11 62.3 10.6 98 306-405 7-109 (112)
171 1p5q_A FKBP52, FK506-binding p 98.4 3E-06 1E-10 75.9 13.1 130 270-401 147-293 (336)
172 3rkv_A Putative peptidylprolyl 98.4 9.6E-07 3.3E-11 69.7 8.9 113 305-439 11-128 (162)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.9E-06 6.4E-11 80.7 12.1 129 307-436 270-414 (457)
174 2fbn_A 70 kDa peptidylprolyl i 98.4 4.9E-07 1.7E-11 74.2 7.3 151 249-401 14-185 (198)
175 2hr2_A Hypothetical protein; a 98.4 7.3E-07 2.5E-11 68.5 7.6 65 374-439 58-133 (159)
176 3q49_B STIP1 homology and U bo 98.4 2.7E-06 9.4E-11 64.8 11.0 101 303-405 7-109 (137)
177 4b4t_Q 26S proteasome regulato 98.4 1.8E-05 6.2E-10 73.6 18.0 192 176-367 11-242 (434)
178 1elr_A TPR2A-domain of HOP; HO 98.4 1.6E-06 5.5E-11 65.3 8.9 95 272-367 6-105 (131)
179 2xev_A YBGF; tetratricopeptide 98.4 9.9E-06 3.4E-10 60.8 12.9 93 346-439 7-107 (129)
180 3ro3_A PINS homolog, G-protein 98.3 2.2E-06 7.7E-11 67.2 9.5 129 308-436 12-157 (164)
181 2if4_A ATFKBP42; FKBP-like, al 98.3 1E-06 3.5E-11 78.9 7.8 148 272-440 181-331 (338)
182 1hxi_A PEX5, peroxisome target 98.3 3.1E-06 1.1E-10 62.9 8.9 96 308-405 20-117 (121)
183 4b4t_Q 26S proteasome regulato 98.3 1.5E-05 5.2E-10 74.1 15.6 185 144-328 10-239 (434)
184 1ihg_A Cyclophilin 40; ppiase 98.3 6.6E-06 2.3E-10 74.5 11.5 89 340-429 272-362 (370)
185 3rkv_A Putative peptidylprolyl 98.2 4.1E-06 1.4E-10 66.1 8.6 128 270-417 11-141 (162)
186 3ro3_A PINS homolog, G-protein 98.2 6.8E-06 2.3E-10 64.4 9.3 131 273-403 12-159 (164)
187 3k9i_A BH0479 protein; putativ 98.2 1.5E-06 5.1E-11 64.3 5.0 90 318-409 3-96 (117)
188 2if4_A ATFKBP42; FKBP-like, al 98.1 7.4E-06 2.5E-10 73.3 8.9 122 305-444 179-300 (338)
189 1wao_1 Serine/threonine protei 98.1 8.9E-06 3.1E-10 76.5 9.8 117 246-365 13-134 (477)
190 3ma5_A Tetratricopeptide repea 98.1 7.8E-06 2.7E-10 58.4 7.2 67 372-439 6-72 (100)
191 2l6j_A TPR repeat-containing p 98.1 1.4E-06 4.9E-11 63.5 3.3 94 340-434 3-104 (111)
192 3lvg_A Clathrin heavy chain 1; 98.1 1.8E-07 6.3E-12 83.6 -2.1 236 44-291 53-325 (624)
193 1ihg_A Cyclophilin 40; ppiase 98.1 6.2E-05 2.1E-09 68.1 13.9 119 140-260 225-362 (370)
194 3n71_A Histone lysine methyltr 98.0 1.6E-05 5.5E-10 74.3 9.5 124 314-438 318-465 (490)
195 1dce_A Protein (RAB geranylger 98.0 0.00019 6.6E-09 68.7 17.1 167 256-426 46-244 (567)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7E-05 2.4E-09 70.1 13.3 118 140-259 270-405 (457)
197 2hr2_A Hypothetical protein; a 98.0 1.9E-05 6.4E-10 60.7 7.6 107 309-416 15-144 (159)
198 1na3_A Designed protein CTPR2; 98.0 3.9E-05 1.3E-09 53.2 8.7 81 341-422 9-91 (91)
199 2kat_A Uncharacterized protein 98.0 2.1E-05 7.3E-10 57.7 7.6 79 324-404 4-84 (115)
200 1zu2_A Mitochondrial import re 98.0 8.4E-06 2.9E-10 62.5 5.0 51 389-440 62-123 (158)
201 1klx_A Cysteine rich protein B 98.0 0.00012 4E-09 55.7 11.6 111 320-439 10-128 (138)
202 3bee_A Putative YFRE protein; 97.9 8.1E-05 2.8E-09 51.9 9.5 70 370-440 3-75 (93)
203 2l6j_A TPR repeat-containing p 97.9 5.3E-05 1.8E-09 54.9 8.5 70 371-441 2-71 (111)
204 3n71_A Histone lysine methyltr 97.9 0.00012 4.1E-09 68.4 12.5 130 179-333 319-463 (490)
205 1dce_A Protein (RAB geranylger 97.8 0.00027 9.2E-09 67.7 13.7 157 283-444 42-228 (567)
206 1na3_A Designed protein CTPR2; 97.8 8.2E-05 2.8E-09 51.6 7.5 68 372-440 8-75 (91)
207 1klx_A Cysteine rich protein B 97.7 0.00049 1.7E-08 52.2 11.6 112 284-404 9-128 (138)
208 2kat_A Uncharacterized protein 97.7 0.00017 5.8E-09 52.7 8.2 63 373-436 19-81 (115)
209 2kc7_A BFR218_protein; tetratr 97.7 6.7E-05 2.3E-09 53.1 5.6 85 347-440 6-93 (99)
210 2kc7_A BFR218_protein; tetratr 97.5 0.00029 1E-08 49.7 7.2 65 379-444 6-71 (99)
211 1zu2_A Mitochondrial import re 97.5 0.00015 5.2E-09 55.5 5.5 85 319-405 16-123 (158)
212 3mkq_A Coatomer beta'-subunit; 97.5 0.012 4E-07 59.5 20.7 155 83-264 606-761 (814)
213 3ly7_A Transcriptional activat 97.4 0.0015 5.1E-08 57.7 12.0 71 370-442 274-344 (372)
214 3ma5_A Tetratricopeptide repea 97.3 0.0007 2.4E-08 47.9 7.4 64 269-333 6-69 (100)
215 3qww_A SET and MYND domain-con 97.3 0.0004 1.4E-08 63.8 7.2 82 354-436 311-410 (433)
216 3qwp_A SET and MYND domain-con 97.1 0.001 3.5E-08 61.2 7.8 60 375-435 331-398 (429)
217 3qww_A SET and MYND domain-con 97.1 0.0014 4.8E-08 60.2 8.5 86 317-402 310-411 (433)
218 3mkq_A Coatomer beta'-subunit; 97.1 0.03 1E-06 56.5 19.0 43 87-131 663-705 (814)
219 3ly7_A Transcriptional activat 97.1 0.019 6.5E-07 50.7 14.8 135 269-405 193-342 (372)
220 1wy6_A Hypothetical protein ST 97.0 0.052 1.8E-06 39.6 14.8 141 280-440 17-157 (172)
221 3qwp_A SET and MYND domain-con 97.0 0.0047 1.6E-07 56.8 10.9 100 312-412 294-414 (429)
222 1pc2_A Mitochondria fission pr 96.9 0.0029 9.8E-08 47.9 7.2 88 319-409 12-106 (152)
223 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0045 1.5E-07 44.1 7.8 73 340-413 4-85 (104)
224 3lvg_A Clathrin heavy chain 1; 96.9 0.00068 2.3E-08 61.2 4.0 371 10-403 54-510 (624)
225 3mkq_B Coatomer subunit alpha; 96.8 0.13 4.4E-06 40.0 16.4 105 146-267 13-117 (177)
226 1qsa_A Protein (soluble lytic 96.7 0.45 1.5E-05 45.7 29.4 313 57-401 18-347 (618)
227 3u64_A Protein TP_0956; tetrat 96.6 0.0088 3E-07 50.6 8.4 54 387-440 218-272 (301)
228 4ady_A RPN2, 26S proteasome re 96.6 0.52 1.8E-05 47.2 21.9 37 95-134 221-257 (963)
229 1wy6_A Hypothetical protein ST 96.4 0.13 4.5E-06 37.5 12.4 138 87-236 18-157 (172)
230 3bee_A Putative YFRE protein; 96.3 0.015 5.2E-07 40.2 7.1 67 339-405 4-75 (93)
231 3mkq_B Coatomer subunit alpha; 96.3 0.26 9.1E-06 38.2 17.0 44 216-265 17-60 (177)
232 1pc2_A Mitochondria fission pr 96.2 0.031 1.1E-06 42.2 8.8 69 371-439 30-102 (152)
233 4h7y_A Dual specificity protei 96.1 0.057 2E-06 40.3 9.5 100 304-405 12-126 (161)
234 3u64_A Protein TP_0956; tetrat 96.0 0.034 1.2E-06 47.0 9.1 103 321-434 179-295 (301)
235 2v5f_A Prolyl 4-hydroxylase su 96.0 0.077 2.6E-06 37.5 9.6 64 170-233 6-75 (104)
236 4ady_A RPN2, 26S proteasome re 95.8 1.6 5.6E-05 43.8 20.9 20 314-333 569-588 (963)
237 4h7y_A Dual specificity protei 95.6 0.075 2.6E-06 39.7 8.4 53 387-440 74-126 (161)
238 4b4t_P 26S proteasome regulato 95.3 1.7 5.8E-05 40.0 21.8 246 23-268 29-324 (445)
239 1nzn_A CGI-135 protein, fissio 95.3 0.033 1.1E-06 40.5 5.5 94 314-410 10-110 (126)
240 4gns_B Protein CSD3, chitin bi 95.2 0.12 4.3E-06 50.5 10.8 54 381-435 345-398 (754)
241 3ltm_A Alpha-REP4; protein eng 95.0 1.2 4E-05 36.0 19.0 79 106-184 63-141 (211)
242 3ltm_A Alpha-REP4; protein eng 94.9 1.2 4E-05 36.0 18.6 154 43-197 31-184 (211)
243 2wpv_A GET4, UPF0363 protein Y 94.8 1.7 5.9E-05 37.4 19.7 168 140-333 35-216 (312)
244 3ltj_A Alpharep-4; protein eng 94.8 1.2 4.1E-05 35.6 16.9 171 43-217 26-196 (201)
245 3ltj_A Alpharep-4; protein eng 94.8 1.3 4.3E-05 35.5 19.3 182 64-253 16-197 (201)
246 1y8m_A FIS1; mitochondria, unk 94.6 0.51 1.8E-05 34.9 10.2 50 391-440 60-109 (144)
247 1nzn_A CGI-135 protein, fissio 94.5 0.47 1.6E-05 34.5 9.8 69 371-439 33-105 (126)
248 3lpz_A GET4 (YOR164C homolog); 94.4 2.3 7.7E-05 37.0 21.5 167 141-333 38-215 (336)
249 4b4t_P 26S proteasome regulato 94.2 3.4 0.00012 38.0 19.3 163 273-435 140-322 (445)
250 3o48_A Mitochondria fission 1 93.6 0.33 1.1E-05 35.4 7.5 72 370-441 37-111 (134)
251 2ff4_A Probable regulatory pro 93.4 0.21 7.1E-06 45.2 7.7 54 380-434 178-231 (388)
252 3lpz_A GET4 (YOR164C homolog); 92.0 5.7 0.00019 34.5 21.7 168 241-436 37-215 (336)
253 3ffl_A Anaphase-promoting comp 91.8 1.2 4.1E-05 34.0 8.6 58 276-333 26-91 (167)
254 1v54_E Cytochrome C oxidase po 91.4 1.3 4.6E-05 30.3 7.5 63 285-349 25-87 (109)
255 4gns_B Protein CSD3, chitin bi 91.1 1.6 5.4E-05 42.9 11.0 124 142-266 252-398 (754)
256 3ffl_A Anaphase-promoting comp 90.8 1.3 4.6E-05 33.7 8.1 120 300-434 13-148 (167)
257 3txn_A 26S proteasome regulato 90.6 9.1 0.00031 34.3 20.0 154 110-263 22-205 (394)
258 3txn_A 26S proteasome regulato 90.1 10 0.00035 34.0 16.9 163 205-367 20-207 (394)
259 4fhn_B Nucleoporin NUP120; pro 89.9 13 0.00045 38.9 17.5 80 206-285 901-986 (1139)
260 2uwj_G Type III export protein 89.9 3.3 0.00011 28.3 8.2 77 25-105 21-97 (115)
261 2ff4_A Probable regulatory pro 89.8 2.5 8.6E-05 38.0 10.7 70 274-344 175-248 (388)
262 4fhn_B Nucleoporin NUP120; pro 89.8 3.4 0.00012 43.3 13.0 144 274-426 816-989 (1139)
263 2p58_C Putative type III secre 89.8 3.5 0.00012 28.2 9.2 77 25-105 22-98 (116)
264 1qsa_A Protein (soluble lytic 89.6 15 0.00051 35.3 33.4 382 12-437 9-410 (618)
265 1v54_E Cytochrome C oxidase po 89.0 2.8 9.6E-05 28.8 7.5 60 187-247 28-87 (109)
266 2wpv_A GET4, UPF0363 protein Y 88.4 12 0.00039 32.3 20.9 168 241-436 35-216 (312)
267 2y69_E Cytochrome C oxidase su 87.8 3.1 0.00011 30.3 7.5 63 285-349 68-130 (152)
268 2uwj_G Type III export protein 87.7 5 0.00017 27.4 9.9 88 218-310 20-107 (115)
269 2p58_C Putative type III secre 87.3 5.4 0.00018 27.3 10.4 88 218-310 21-108 (116)
270 1zbp_A Hypothetical protein VP 86.3 1.9 6.5E-05 35.9 6.7 56 350-405 6-63 (273)
271 2y69_E Cytochrome C oxidase su 83.0 7.4 0.00025 28.4 7.5 60 187-247 71-130 (152)
272 1zbp_A Hypothetical protein VP 82.3 21 0.00071 29.8 11.6 116 279-405 6-132 (273)
273 4b4t_R RPN7, 26S proteasome re 82.0 8.8 0.0003 35.0 10.1 93 140-232 133-236 (429)
274 3esl_A Checkpoint serine/threo 81.7 18 0.0006 28.7 10.1 52 354-405 92-147 (202)
275 1oyz_A Hypothetical protein YI 81.6 23 0.00077 29.8 21.6 19 268-286 204-222 (280)
276 4b4t_R RPN7, 26S proteasome re 79.6 12 0.0004 34.2 10.0 94 241-334 133-237 (429)
277 3o48_A Mitochondria fission 1 79.6 16 0.00053 26.7 8.7 65 302-367 37-104 (134)
278 1wdy_A 2-5A-dependent ribonucl 76.8 18 0.00062 30.2 10.0 47 217-263 192-240 (285)
279 1y8m_A FIS1; mitochondria, unk 71.6 28 0.00097 25.8 11.1 71 338-409 36-112 (144)
280 1wdy_A 2-5A-dependent ribonucl 70.7 44 0.0015 27.7 12.2 19 52-70 43-61 (285)
281 1k1a_A B-cell lymphoma 3-encod 70.1 41 0.0014 27.1 10.5 86 17-103 13-103 (241)
282 4a1g_A Mitotic checkpoint seri 70.0 32 0.0011 25.8 9.8 51 391-441 83-134 (152)
283 4b4t_S RPN3, 26S proteasome re 68.6 13 0.00044 34.6 7.1 56 46-101 232-295 (523)
284 2nsz_A Programmed cell death p 66.0 28 0.00095 25.3 7.3 65 242-306 10-79 (129)
285 3kea_A K1L; tropism, ANK repea 64.7 40 0.0014 28.3 9.4 18 53-70 36-53 (285)
286 2wvi_A Mitotic checkpoint seri 62.6 49 0.0017 25.2 9.6 68 339-406 61-129 (164)
287 2fu4_A Ferric uptake regulatio 61.2 8.8 0.0003 25.2 3.6 58 2-60 9-67 (83)
288 2ion_A PDCD4, programmed cell 58.5 24 0.00083 26.5 5.9 65 242-306 12-81 (152)
289 3kea_A K1L; tropism, ANK repea 57.7 79 0.0027 26.5 10.0 49 213-265 37-85 (285)
290 2d2s_A Exocyst complex compone 56.5 56 0.0019 26.7 8.2 84 176-262 25-114 (235)
291 2qx5_A Nucleoporin NIC96; mRNA 56.3 1.5E+02 0.0051 28.7 18.3 81 112-195 299-382 (661)
292 4aez_C MAD3, mitotic spindle c 56.2 64 0.0022 26.0 8.2 68 339-406 115-183 (223)
293 2fe3_A Peroxide operon regulat 54.3 58 0.002 24.1 7.5 68 357-425 6-73 (145)
294 1te4_A Conserved protein MTH18 53.7 23 0.00078 25.6 5.1 16 106-121 55-70 (131)
295 3mv2_A Coatomer subunit alpha; 53.7 1.1E+02 0.0037 26.4 11.6 59 364-437 196-256 (325)
296 4gq2_M Nucleoporin NUP120; bet 52.1 94 0.0032 31.8 10.9 105 113-218 816-950 (950)
297 2d2s_A Exocyst complex compone 51.6 48 0.0017 27.1 7.1 29 338-366 88-116 (235)
298 4gq2_M Nucleoporin NUP120; bet 51.5 2.2E+02 0.0074 29.2 13.7 109 143-253 815-950 (950)
299 3b7b_A Euchromatic histone-lys 50.4 71 0.0024 25.6 8.3 142 16-163 14-166 (237)
300 4ets_A Ferric uptake regulatio 48.9 47 0.0016 25.2 6.3 64 360-424 20-85 (162)
301 1oyz_A Hypothetical protein YI 48.5 1.2E+02 0.004 25.2 23.6 22 380-402 242-263 (280)
302 3kae_A CDC27, possible protein 48.0 93 0.0032 23.9 13.7 81 118-201 13-94 (242)
303 3eyy_A Putative iron uptake re 47.4 18 0.00061 27.0 3.7 57 2-60 11-67 (145)
304 2xig_A Ferric uptake regulatio 47.3 81 0.0028 23.5 7.4 66 359-425 13-78 (150)
305 3ygs_P Procaspase 9; apoptosis 47.0 37 0.0013 23.1 4.9 38 152-189 51-88 (97)
306 4g8k_A 2-5A-dependent ribonucl 46.7 1.4E+02 0.0047 25.6 13.1 279 14-304 26-328 (337)
307 2p1h_A APAF-1, apoptotic prote 45.0 47 0.0016 22.3 5.2 37 151-187 49-85 (94)
308 4ets_A Ferric uptake regulatio 43.7 25 0.00084 26.8 4.0 37 35-72 23-59 (162)
309 3ygs_P Procaspase 9; apoptosis 43.4 33 0.0011 23.4 4.2 32 60-91 52-83 (97)
310 3eu9_A Huntingtin-interacting 43.3 1E+02 0.0035 24.5 8.2 13 57-69 18-30 (240)
311 3eiq_C Programmed cell death p 42.0 1.8E+02 0.0062 25.6 13.0 213 14-233 58-321 (358)
312 3mwm_A ZUR, putative metal upt 41.7 43 0.0015 24.6 5.0 47 378-424 18-64 (139)
313 2ion_A PDCD4, programmed cell 41.6 1.1E+02 0.0037 22.9 9.1 63 141-203 12-79 (152)
314 2o03_A Probable zinc uptake re 41.3 47 0.0016 24.1 5.1 47 378-424 15-61 (131)
315 1bd8_A P19INK4D CDK4/6 inhibit 40.2 1.1E+02 0.0036 22.4 8.0 112 16-132 5-123 (156)
316 1ug3_A EIF4GI, eukaryotic prot 39.8 1.6E+02 0.0056 25.5 9.2 140 142-295 15-166 (339)
317 1te4_A Conserved protein MTH18 39.3 1E+02 0.0035 21.9 7.8 58 67-124 47-104 (131)
318 2fe3_A Peroxide operon regulat 39.0 1E+02 0.0035 22.7 6.7 59 296-356 13-71 (145)
319 4b4t_S RPN3, 26S proteasome re 38.6 68 0.0023 29.9 6.6 62 305-367 231-296 (523)
320 3eu9_A Huntingtin-interacting 38.1 1.5E+02 0.0051 23.5 8.9 49 20-72 16-66 (240)
321 2o03_A Probable zinc uptake re 37.8 51 0.0017 23.9 4.8 58 3-61 4-61 (131)
322 1bpo_A Protein (clathrin); cla 37.4 2.4E+02 0.0084 25.8 11.2 33 232-264 354-386 (494)
323 3mwm_A ZUR, putative metal upt 36.9 48 0.0017 24.3 4.6 58 3-61 7-64 (139)
324 2r9g_A AAA ATPase, central reg 36.4 1.6E+02 0.0054 23.3 9.7 63 174-237 16-86 (204)
325 3esl_A Checkpoint serine/threo 35.9 1.6E+02 0.0055 23.3 12.1 55 183-237 93-148 (202)
326 2p1h_A APAF-1, apoptotic prote 35.7 63 0.0022 21.6 4.7 33 59-91 50-82 (94)
327 1n11_A Ankyrin; clathrin, BAND 35.6 2.4E+02 0.0082 25.2 10.6 304 15-329 16-332 (437)
328 2ijq_A Hypothetical protein; s 35.0 1.5E+02 0.005 22.5 6.9 45 355-399 46-101 (161)
329 1wgl_A TOLL-interacting protei 35.0 66 0.0023 19.4 4.1 47 394-442 11-57 (59)
330 1mzb_A Ferric uptake regulatio 34.7 62 0.0021 23.6 4.9 63 362-425 7-70 (136)
331 2nsz_A Programmed cell death p 34.5 1.3E+02 0.0044 21.7 10.5 63 141-203 10-77 (129)
332 3bge_A Predicted ATPase; struc 34.2 1.7E+02 0.0058 23.0 8.6 45 174-218 9-56 (201)
333 3ljn_A Hypothetical protein; a 34.0 1.6E+02 0.0054 25.6 8.4 21 52-72 57-77 (364)
334 2qx5_A Nucleoporin NIC96; mRNA 33.5 3.4E+02 0.012 26.3 21.5 85 350-434 452-564 (661)
335 2xig_A Ferric uptake regulatio 32.5 1.4E+02 0.0049 22.1 6.7 60 295-356 17-76 (150)
336 3ctd_A Putative ATPase, AAA fa 31.5 2E+02 0.0067 22.9 8.8 66 171-236 34-107 (213)
337 2w57_A Ferric uptake regulatio 31.3 72 0.0025 23.8 4.8 43 382-424 25-68 (150)
338 3hra_A Ankyrin repeat family p 30.8 1.8E+02 0.0061 22.2 8.8 16 56-71 13-28 (201)
339 2zu6_B Programmed cell death p 30.8 2E+02 0.0068 24.6 7.9 92 142-233 170-270 (307)
340 3bu8_A Telomeric repeat-bindin 30.6 1.3E+02 0.0044 24.1 6.0 46 357-402 88-143 (235)
341 3eyy_A Putative iron uptake re 30.5 69 0.0024 23.7 4.5 63 360-424 6-68 (145)
342 1mzb_A Ferric uptake regulatio 30.3 66 0.0022 23.4 4.4 59 2-61 10-69 (136)
343 1ya0_A SMG-7 transcript varian 29.2 1.7E+02 0.0058 27.2 7.7 46 388-434 167-212 (497)
344 2w57_A Ferric uptake regulatio 28.8 77 0.0026 23.6 4.5 59 2-61 9-68 (150)
345 2etb_A Transient receptor pote 28.8 1.5E+02 0.0051 24.0 7.0 54 16-70 5-68 (256)
346 3hra_A Ankyrin repeat family p 28.0 2E+02 0.0069 21.9 9.6 16 55-70 46-61 (201)
347 2fu4_A Ferric uptake regulatio 27.6 1.2E+02 0.0042 19.3 7.2 61 194-255 7-68 (83)
348 3bu8_A Telomeric repeat-bindin 26.4 2.5E+02 0.0086 22.5 11.6 54 321-374 88-148 (235)
349 1bpo_A Protein (clathrin); cla 26.0 3.9E+02 0.013 24.5 13.9 111 152-264 343-454 (494)
350 3ph0_C ASCG; type III secretio 25.7 1.1E+02 0.0037 18.3 3.6 40 25-65 21-60 (61)
351 2ijq_A Hypothetical protein; s 24.5 2.3E+02 0.0079 21.4 7.7 53 281-333 43-103 (161)
352 3ljn_A Hypothetical protein; a 24.2 2.1E+02 0.0072 24.8 7.4 79 350-433 179-266 (364)
353 2f6m_A Suppressor protein STP2 23.3 1.4E+02 0.0048 18.5 4.0 48 375-423 4-51 (65)
354 1zl8_A LIN-7; heterodimer, alp 23.0 1.2E+02 0.0041 17.5 3.5 46 23-70 6-51 (53)
355 2rfa_A Transient receptor pote 22.9 2.8E+02 0.0095 21.8 8.5 180 83-264 7-219 (232)
356 1k1a_A B-cell lymphoma 3-encod 21.9 2.9E+02 0.01 21.7 7.8 18 181-198 18-35 (241)
357 3jxi_A Vanilloid receptor-rela 21.3 2.1E+02 0.0073 23.1 6.5 54 17-70 9-71 (260)
358 2r9g_A AAA ATPase, central reg 20.4 3.2E+02 0.011 21.6 9.3 62 275-338 16-85 (204)
359 2b7e_A PRE-mRNA processing pro 20.2 89 0.003 18.9 2.6 33 26-58 2-35 (59)
360 3t5v_B Nuclear mRNA export pro 20.2 3.5E+02 0.012 24.7 7.8 63 375-437 178-249 (455)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-42 Score=336.59 Aligned_cols=426 Identities=10% Similarity=-0.016 Sum_probs=381.3
Q ss_pred CCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccC--CCCcccHHHHHHH
Q 012108 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP--EKDIIAWNSMLDA 85 (471)
Q Consensus 8 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 85 (471)
++...|+.++..+.+.|++++|..+++++.+. .|+..++..++.+|.+.|++++|..+|+.+. .+++.+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 56678999999999999999999999999965 4677889999999999999999999999984 5788999999999
Q ss_pred HHcCCCHHHHHHHHhcCCCCC-------------------hhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHH
Q 012108 86 FASCGQMDHAMKLIDLMPLKD-------------------VTSFNIMISGYARIGKIHSARYIFDKVPA--K-DVVSWNS 143 (471)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ 143 (471)
|.+.|++++|+++|+++...+ ..+|+.++.+|.+.|++++|.+.|+++.. | +...+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 999999999999999654333 78999999999999999999999999943 2 2223222
Q ss_pred H--------------------------------------HHHHHhCCCHHHHHHHHHhccc--cChHHHHHHHHHHHhcC
Q 012108 144 L--------------------------------------ILAYTNAGEMEKAGEMFKKMLV--KNVITWNTMVTGYLRSQ 183 (471)
Q Consensus 144 l--------------------------------------~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 183 (471)
+ +..|.+.|++++|.++|+++.. ++..+|+.++..|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 2 4456678999999999999965 79999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 012108 184 LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFY 263 (471)
Q Consensus 184 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 263 (471)
++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999998765 3477889999999999999999999999999765 6788999999999999999999999999
Q ss_pred cCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 012108 264 KSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK 340 (471)
Q Consensus 264 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 340 (471)
++.. .+..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.+|.+.|++++|.++|+++.+ ..+.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 8653 467899999999999999999999999999864 45778999999999999999999999999998 34567
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-------PFEPT--ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGEL 411 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (471)
+.+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+|. ++.+|
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 553 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVH 553 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 899999999999999999999999988 44677 789999999999999999999999999999998 99999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 412 MMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
..++.+|.+.|++++|.++++++.+.++..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-38 Score=310.76 Aligned_cols=409 Identities=8% Similarity=-0.029 Sum_probs=361.4
Q ss_pred CCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCC----------
Q 012108 5 GVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK---------- 74 (471)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------- 74 (471)
+..|+..++..++.+|...|++++|..+++.+... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 112 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 112 DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 35688889999999999999999999999988654 678899999999999999999999999965433
Q ss_pred ---------CcccHHHHHHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHH-----------------------------
Q 012108 75 ---------DIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIM----------------------------- 113 (471)
Q Consensus 75 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l----------------------------- 113 (471)
+..+|+.++.+|.+.|++++|+++|+++.+. +...+..+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 3678999999999999999999999999644 22333222
Q ss_pred ---------HHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHH
Q 012108 114 ---------ISGYARIGKIHSARYIFDKVPA--KDVVSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGY 179 (471)
Q Consensus 114 ---------~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 179 (471)
+..|.+.|++++|.++|+++.. ++..++..++.+|.+.|++++|.++|+++.. .+..+|+.++.++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence 4456678999999999999976 7899999999999999999999999999942 3678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012108 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259 (471)
Q Consensus 180 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 259 (471)
.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998653 5578889999999999999999999999999875 667889999999999999999999
Q ss_pred HHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-
Q 012108 260 EVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF- 335 (471)
Q Consensus 260 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 335 (471)
++|+++.. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+..
T Consensus 428 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 99987643 477899999999999999999999999998763 4478899999999999999999999999998722
Q ss_pred --CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCch
Q 012108 336 --GVTRK--LEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409 (471)
Q Consensus 336 --~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 409 (471)
+..|+ ..+|..++.+|.+.|++++|.+.|+++ .. +.+..+|..++.+|...|++++|.+.++++.+.+|. ++.
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~ 585 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIM 585 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChH
Confidence 55676 789999999999999999999999987 33 447899999999999999999999999999999999 899
Q ss_pred hHHHHHHHHH
Q 012108 410 ELMMFANLYA 419 (471)
Q Consensus 410 ~~~~l~~~~~ 419 (471)
.+..++.+|.
T Consensus 586 ~~~~l~~~~~ 595 (597)
T 2xpi_A 586 ASDLLKRALE 595 (597)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9998888764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.9e-29 Score=233.82 Aligned_cols=372 Identities=10% Similarity=-0.011 Sum_probs=260.5
Q ss_pred HHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHHcCCCHH
Q 012108 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFASCGQMD 93 (471)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 93 (471)
...+...|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345566777777777777776664 33445556666666677777777776665442 23445555556666666666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccc--c-ChH
Q 012108 94 HAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--K-NVI 170 (471)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~ 170 (471)
+|+..|+++... .+.+...|..+..++.+.|++++|.+.|+++.. | +..
T Consensus 85 ~A~~~~~~al~~----------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (388)
T 1w3b_A 85 EAIEHYRHALRL----------------------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136 (388)
T ss_dssp HHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHc----------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 665555554311 112233455555555555566666555555522 2 334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYA 250 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (471)
.+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 45556666666666666666666666542 2234566666666667777777777777776654 445666677777777
Q ss_pred hcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 012108 251 KCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCEL 327 (471)
Q Consensus 251 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 327 (471)
..|++++|+..|++... .+..++..+...+.+.|++++|+..|+++.+.+ +.+..++..+...+.+.|++++|.+.
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777765432 356677788888888888888888888888763 33567888899999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 328 FSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
|+++.+ ..+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...++++.+..|.
T Consensus 294 ~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 294 YNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999988 35667888999999999999999999999987 4444 5778999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHhcCC
Q 012108 406 LSDGELMMFANLYASCGQ 423 (471)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~ 423 (471)
++..|..++.++...|+
T Consensus 372 -~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 372 -FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -CHHHHHHHHHHHHHTCC
T ss_pred -CHHHHHhHHHHHHHccC
Confidence 89999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1e-28 Score=228.90 Aligned_cols=351 Identities=12% Similarity=0.034 Sum_probs=300.8
Q ss_pred HHHHHcCCCHHHHHHHHhcCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCHHH
Q 012108 83 LDAFASCGQMDHAMKLIDLMPL--K-DVTSFNIMISGYARIGKIHSARYIFDKVP---AKDVVSWNSLILAYTNAGEMEK 156 (471)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 156 (471)
...+.+.|++++|.+.++.+.. | +...+..+...+...|++++|...++... +.+..+|..+..++.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 4556677788888777776642 2 45566677777788888888888887763 3466789999999999999999
Q ss_pred HHHHHHhcc--cc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 012108 157 AGEMFKKML--VK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD-YLTVTSVLSACANLGSLETGARIHVYATD 232 (471)
Q Consensus 157 A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (471)
|.+.|+++. .| +..+|..+..++.+.|++++|.+.|+++.+. .|+ ...+..+...+...|++++|.+.|+.+.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999983 33 5668999999999999999999999999885 344 45566777888899999999999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012108 233 NGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFI 309 (471)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 309 (471)
.. +.+..++..+...+...|++++|+..|+++.. .+...|..+...+...|++++|...+++..... +.+..++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 75 66788999999999999999999999998654 356789999999999999999999999998752 33578889
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcC
Q 012108 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGALLSACVIHQ 387 (471)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g 387 (471)
.+...+...|++++|.+.|+++.+ ..+.++.++..+..++.+.|++++|.+.|+++ ..+++..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 999999999999999999999998 34556888999999999999999999999988 33557889999999999999
Q ss_pred CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
++++|...++++.+..|. +..++..++.+|.+.|++++|.+.++++.+..+.
T Consensus 320 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp CHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999998 8999999999999999999999999999886654
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.1e-29 Score=235.33 Aligned_cols=183 Identities=12% Similarity=0.148 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHcCCCCchh
Q 012108 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS---------LETGARIHVYATDNGLASNPH 240 (471)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 240 (471)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34677788888888888888888888888888888888888888876554 567888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 012108 241 ATTALIDMYAKCGSIEQSLEVFYKSQV----KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACS 316 (471)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 316 (471)
+|++++.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 888888888888888888888877654 6788888888888888888888888888888888888888888888888
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh
Q 012108 317 HAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR 353 (471)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (471)
+.|++++|.+++++|.+ .+..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888 5888888888888888765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.7e-29 Score=235.60 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=177.4
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012108 187 EVVDLFDEMKAGNVKPDY-LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265 (471)
Q Consensus 187 ~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (471)
.+..+.+++.+.++.+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 455666777777765543 457889999999999999999999999999999999999999999887764321
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 012108 266 QVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYG 345 (471)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (471)
.+.+..++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYG 144 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceeh
Confidence 12345688999999999999999999999999999999999999999999998 69999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 012108 346 CMVDLLGRARLLDRAIELIEAM---PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (471)
.+|.+|++.|++++|.++|++| ++.||..||+.|+.+|++.|+.++|.+++++|.+.+..|+..||..+...|...
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999998 789999999999999999999999999999999999999999999999888764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-25 Score=214.76 Aligned_cols=422 Identities=9% Similarity=-0.050 Sum_probs=253.0
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--C-CcccHHHHHHHHH
Q 012108 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--K-DIIAWNSMLDAFA 87 (471)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 87 (471)
..+......+...|++++|...|+++++.. |+..++..+..++.+.|++++|...++++.+ | +..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 356677788899999999999999999886 6888999999999999999999999998764 3 5568889999999
Q ss_pred cCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHH---HHHHHHhCCCHHHH
Q 012108 88 SCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPA----KDVVSWNS---LILAYTNAGEMEKA 157 (471)
Q Consensus 88 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~---l~~~~~~~~~~~~A 157 (471)
+.|++++|...|+++... +.......+..+........+.+.+..+.. ++...... .............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999887543 333344444444433322222222211100 00000000 00000000111111
Q ss_pred HHHHHhcc----------ccChHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCCC--------CHHHHHHHH
Q 012108 158 GEMFKKML----------VKNVITWNTMVTGYLR---SQLYIEVVDLFDEMKA-----GNVKP--------DYLTVTSVL 211 (471)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~g~~p--------~~~~~~~l~ 211 (471)
...+.... ..+...+......+.. .|++++|...|+++.+ ....| +...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11111110 0123333333333333 5666666666666655 21111 223455555
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHH
Q 012108 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYA 288 (471)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 288 (471)
..+...|++++|...++.+.+.... ...+..+...+...|++++|+..++++.. .+..++..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 6666666666666666666665422 56666666666666666666666665433 245566666666666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 012108 289 ALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM- 367 (471)
Q Consensus 289 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 367 (471)
|...++++.... +.+...+..+...+...|++++|...++++.+ ..+.+...+..+...+.+.|++++|...++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777776666542 22345566666666677777777777776665 23334556666666677777777777766665
Q ss_pred C---CCCC----HhHHHHHHHHHhh---cCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 368 P---FEPT----ESILGALLSACVI---HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 368 ~---~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
. ..++ ...+..+...+.. .|++++|...++++.+..|. ++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 1 1111 2266666666666 67777777777777776666 6666667777777777777777777766665
Q ss_pred CCc
Q 012108 438 GIV 440 (471)
Q Consensus 438 ~~~ 440 (471)
++.
T Consensus 479 ~~~ 481 (514)
T 2gw1_A 479 ART 481 (514)
T ss_dssp CSS
T ss_pred ccc
Confidence 554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9e-26 Score=217.13 Aligned_cols=391 Identities=11% Similarity=-0.007 Sum_probs=275.3
Q ss_pred hHHHHHHHHHhccCCHhHHHHHhcccCC--CCcccHHHHHHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhc
Q 012108 46 YVQTALLKMYGSLRCIDDAFKVFEKMPE--KDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARI 120 (471)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 120 (471)
..+......+.+.|++++|+..|+++.+ |+..+|..+..++.+.|++++|+..++++... +..++..++.++.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4556667777888888888888888764 77777888888888888888888888776532 556777788888888
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHhcc----ccChHHHHHHHHHHHhcCCHHHHHHHHH
Q 012108 121 GKIHSARYIFDKVPA---KDVVSWNSLILAYTNAGEMEKAGEMFKKML----VKNVITWNTMVTGYLRSQLYIEVVDLFD 193 (471)
Q Consensus 121 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 193 (471)
|++++|...|+++.. ++......++..+........+.+.+..+. .++...++.-...............+..
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 888888888877732 233333334433333322222222221110 0000000000000001111111111111
Q ss_pred HHHhCCCC--------CC-HHHHHHHHHHHHc---cCChHHHHHHHHHHHH-----cCC--------CCchhHHHHHHHH
Q 012108 194 EMKAGNVK--------PD-YLTVTSVLSACAN---LGSLETGARIHVYATD-----NGL--------ASNPHATTALIDM 248 (471)
Q Consensus 194 ~m~~~g~~--------p~-~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~ 248 (471)
.+...... |+ ...+......+.. .|++++|...++.+.+ ..- +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 11111111 22 3344444444443 8999999999999988 311 2346678889999
Q ss_pred HHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 012108 249 YAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326 (471)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 326 (471)
+...|++++|...|+++.. |+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|..
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999987653 347788889999999999999999999998863 4466788889999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
.++++.+ ..+.+...+..+...+...|++++|...++++ . .+.+..++..+...+...|++++|...++++.+..|
T Consensus 326 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 326 DFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 9999998 44557888999999999999999999999987 2 234567888999999999999999999999999888
Q ss_pred CCCch------hHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCc
Q 012108 405 YLSDG------ELMMFANLYAS---CGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 405 ~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~ 440 (471)
. ++. .+..++.+|.. .|++++|.+.++++.+..+.
T Consensus 404 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 404 K-LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp T-SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred c-cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 7 544 89999999999 99999999999999887654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=3.2e-25 Score=214.58 Aligned_cols=422 Identities=11% Similarity=-0.016 Sum_probs=290.1
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC---CCcccHHHHHHHHH
Q 012108 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE---KDIIAWNSMLDAFA 87 (471)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 87 (471)
..|..+...+...|++++|.+.|+++++.. +.+..++..+..+|.+.|++++|+..|+++.+ .+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 456777888899999999999999999886 45778899999999999999999999998764 35678888999999
Q ss_pred cCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhCCCHHHHHHHH
Q 012108 88 SCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAK------DVVSWNSLILAYTNAGEMEKAGEMF 161 (471)
Q Consensus 88 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~ 161 (471)
..|++++|+..|+.+ ..++......+..+...+....|...++.+... ........+..+....+.+.+...+
T Consensus 105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 999999999999744 333333344455666666677888888887442 1122233444555666666666665
Q ss_pred HhccccChH---HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHccCChHH
Q 012108 162 KKMLVKNVI---TWNTMVTGYLR--------SQLYIEVVDLFDEMKAGNVKPD--------YLTVTSVLSACANLGSLET 222 (471)
Q Consensus 162 ~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~--------~~~~~~l~~~~~~~~~~~~ 222 (471)
......+.. ....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...|++++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 555333222 23333333222 246777888888777643 33 2235555666777788888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012108 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDS 299 (471)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (471)
|...++.+.+.. |+...+..+...+...|++++|+..++++.. .+..+|..+...+...|++++|...++++...
T Consensus 262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 888888887764 4467777777888888888888888776543 35667777888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-------CCC
Q 012108 300 CVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-------FEP 371 (471)
Q Consensus 300 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-------~~p 371 (471)
. +.+...+..+...+...|++++|...++++.+ ..+.+...+..+...+...|++++|.+.|+++ . ...
T Consensus 340 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 340 N-PENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 3 22456677777788888888888888888877 23455667777888888888888888888775 1 111
Q ss_pred CHhHHHHHHHHHhhc----------CCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 372 TESILGALLSACVIH----------QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 372 ~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
....+..+...+... |++++|...++++.+..|. ++..+..++.+|.+.|++++|.+.++++.+..+..
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 122234445556666 8888888888888888887 77888888888888888888888888887766543
Q ss_pred c
Q 012108 442 T 442 (471)
Q Consensus 442 ~ 442 (471)
+
T Consensus 496 ~ 496 (537)
T 3fp2_A 496 D 496 (537)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.1e-23 Score=199.16 Aligned_cols=329 Identities=10% Similarity=0.025 Sum_probs=225.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHH
Q 012108 106 DVTSFNIMISGYARIGKIHSARYIFDKVP---AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGY 179 (471)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 179 (471)
+...+..++..+.+.|++++|..+|+++. +.+..++..+..++...|++++|.+.|+++.. .+..++..+..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 34455556666666666666666666552 23455666666666677777777777766632 2455666677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHHH
Q 012108 180 LRSQLYIEVVDLFDEMKAGNVKPDY----LTVTSV------------LSACANLGSLETGARIHVYATDNGLASNPHATT 243 (471)
Q Consensus 180 ~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 243 (471)
.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|...++.+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 7777777777777776654 2332 233333 334677788888888888887765 55677778
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH--------
Q 012108 244 ALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD-DITFIGL-------- 311 (471)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l-------- 311 (471)
.++..|...|++++|++.|+++.. .+..+|..++..|...|++++|+..|+++... .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 888888888888888888877643 46677888888888888888888888888764 333 3333333
Q ss_pred ----HHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 012108 312 ----LSACSHAGLVQEGCELFSRMEKDFGVTRK--LEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSAC 383 (471)
Q Consensus 312 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 383 (471)
...+...|++++|...|+++.+.....+. ...+..+..++.+.|++++|...++++ ...| +..+|..+..+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67788888888888888888873111111 346778888888888999988888886 3334 677888888888
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHH------------HHhcC-----CHHHHHHHHHH-hhhCCCc
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL------------YASCG-----QWEEANRWRNM-MNDTGIV 440 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-m~~~~~~ 440 (471)
...|++++|...++++++..|. ++..+..+..+ |...| +.+++.+.+++ ..+..+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 8889999999999998888888 78888877743 44444 55666777765 4444443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.2e-23 Score=197.03 Aligned_cols=299 Identities=13% Similarity=-0.009 Sum_probs=257.9
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012108 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213 (471)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 213 (471)
+...+..+...+.+.|++++|.++|+++.. .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 567788899999999999999999999843 477889999999999999999999999998864 3457788899999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCch---hHHHHH------------HHHHHhcCChHHHHHHHhcCCC---CChhhHHH
Q 012108 214 CANLGSLETGARIHVYATDNGLASNP---HATTAL------------IDMYAKCGSIEQSLEVFYKSQV---KDVFCWNA 275 (471)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 275 (471)
+.+.|++++|...++.+.+.. +.+. ..+..+ ...+...|++++|+..|+++.. .+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999875 4444 555555 4458999999999999988654 46788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH--------
Q 012108 276 MILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCM-------- 347 (471)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------- 347 (471)
++..|.+.|++++|...|+++.... +.+..++..+...+...|++++|...|+++.+ ..+.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 45678999999999999999999999999987 233445555555
Q ss_pred ----HHHHhhcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 012108 348 ----VDLLGRARLLDRAIELIEAM-PFEPT-----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417 (471)
Q Consensus 348 ----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (471)
...+.+.|++++|.+.|+++ ...|+ ...+..+...+.+.|++++|...++++.+..|. ++..|..++.+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 338 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 78899999999999999988 33444 447888899999999999999999999999998 89999999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 418 YASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
|...|++++|.+.++++.+..+..
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHhcCHHHHHHHHHHHHHhCcch
Confidence 999999999999999998876654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.6e-22 Score=193.09 Aligned_cols=398 Identities=12% Similarity=0.020 Sum_probs=308.1
Q ss_pred CCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHH
Q 012108 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFA 87 (471)
Q Consensus 8 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 87 (471)
.+...|..+...+...|++++|.+.++++++.+ +.+..++..+..++...|++++|...|+.+ ..++......+..+.
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPML 134 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHH
Confidence 355788889999999999999999999999986 447788999999999999999999999744 322333333455666
Q ss_pred cCCCHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhC-------
Q 012108 88 SCGQMDHAMKLIDLMPLK------DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV---SWNSLILAYTNA------- 151 (471)
Q Consensus 88 ~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~------- 151 (471)
..+...+|...++.+... ........+..+....+.+.+...+......+.. ....+...+...
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 667778899999888653 1223345566677788888888887777655443 444444443333
Q ss_pred -CCHHHHHHHHHhcccc--C--------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 012108 152 -GEMEKAGEMFKKMLVK--N--------VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSL 220 (471)
Q Consensus 152 -~~~~~A~~~~~~~~~~--~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 220 (471)
|++++|..+|+++... + ..++..+...+...|++++|...|++..+. .|+...+..+...+...|++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 4889999999998443 2 235777778899999999999999999885 56678888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 012108 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMN 297 (471)
Q Consensus 221 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (471)
++|...++.+.+.. +.+..++..+...+...|++++|+..|+++.. .+...+..+...+...|++++|...++++.
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999886 66788999999999999999999999987654 456789999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHhhc----------CCHHHHHHH
Q 012108 298 DSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR----KLEHYGCMVDLLGRA----------RLLDRAIEL 363 (471)
Q Consensus 298 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~ 363 (471)
... +.+...+..+...+...|++++|...|+++.+.....+ ....+..+..++... |++++|...
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 863 44567888899999999999999999999887321111 122244555677777 999999999
Q ss_pred HHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHH
Q 012108 364 IEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412 (471)
Q Consensus 364 ~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (471)
|+++ . .+.+...+..+...+...|++++|...|+++.+..|. +.....
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~ 500 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART-MDEKLQ 500 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 9988 3 3346788999999999999999999999999999988 554433
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=3.8e-21 Score=175.73 Aligned_cols=295 Identities=11% Similarity=-0.011 Sum_probs=151.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCHHHHHHHHHhccc--c-ChHHHHHHHHHHH
Q 012108 107 VTSFNIMISGYARIGKIHSARYIFDKVP---AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV--K-NVITWNTMVTGYL 180 (471)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 180 (471)
+..+..+...+...|++++|...|+++. +.+...+..+..++...|++++|...|+++.. | +...|..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 3445556666666666666666666652 23445556666666666666666666666522 2 4455666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH
Q 012108 181 RSQLYIEVVDLFDEMKAGNVKP----DYLTVTSV------------LSACANLGSLETGARIHVYATDNGLASNPHATTA 244 (471)
Q Consensus 181 ~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 244 (471)
..|++++|...|++..+. .| +...+..+ ...+...|++++|...++.+.+.. +.+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~----- 154 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDA----- 154 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch-----
Confidence 666666666666666553 23 22222222 233444444444444444444433 3334
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 012108 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324 (471)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 324 (471)
..+..+...+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 155 --------------------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 155 --------------------------ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp --------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred --------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 444444555555555555555555554431 22344445555555555555555
Q ss_pred HHHHHHhHHhcCCCCChhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----hHHHHHHHHHhhc
Q 012108 325 CELFSRMEKDFGVTRKLEHYG------------CMVDLLGRARLLDRAIELIEAM-PFEPT-E----SILGALLSACVIH 386 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~ 386 (471)
...++++.+. .+.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 5555555441 112222221 1234455555566655555554 11222 1 1233344555566
Q ss_pred CCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 387 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
|++++|...++++.+..|. ++..+..++.+|.+.|++++|.+.++++.+..+
T Consensus 286 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 6666666666666666555 555666666666666666666666666655543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.5e-20 Score=171.75 Aligned_cols=322 Identities=12% Similarity=0.047 Sum_probs=240.3
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 012108 75 DIIAWNSMLDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPA---KDVVSWNSLILAY 148 (471)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 148 (471)
++..+..+...+...|++++|+..|+++... ++.++..+..++...|++++|...++++.. .+...+..+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456788889999999999999999988633 677899999999999999999999999843 4667889999999
Q ss_pred HhCCCHHHHHHHHHhccc--c----ChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012108 149 TNAGEMEKAGEMFKKMLV--K----NVITWNTM------------VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210 (471)
Q Consensus 149 ~~~~~~~~A~~~~~~~~~--~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 210 (471)
...|++++|...|++... | +...+..+ ...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 999999999999999944 3 34445444 578899999999999999998764 4567788888
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 012108 211 LSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAAL 290 (471)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 290 (471)
...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++....++ +...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~~ 225 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--------------DHKRCF 225 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------TCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--------------cchHHH
Confidence 899999999999999999998875 66777778888888888888877777765433111 011111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHhhcCCHHHHHHHHHh
Q 012108 291 KLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL----EHYGCMVDLLGRARLLDRAIELIEA 366 (471)
Q Consensus 291 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (471)
..+..+. .......+...+...|++++|...++++.+. .+.+. ..+..+..++...|++++|.+.+++
T Consensus 226 ~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 226 AHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1111111 1112223355667778888888888777762 12222 2344566777788888888888877
Q ss_pred C-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 012108 367 M-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421 (471)
Q Consensus 367 ~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (471)
. ...| +..++..+...+...|++++|...++++.+..|. ++..+..+..++...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHH
Confidence 6 2233 6778888888888889999999999999888888 777777777765543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.1e-19 Score=164.01 Aligned_cols=284 Identities=10% Similarity=-0.009 Sum_probs=173.7
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHhcccc---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012108 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLVK---NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213 (471)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 213 (471)
+...+..+...+...|++++|.++|+++... +...+..++.++...|++++|..+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 4445555556666666666666666665221 33444555556666666666666666665532 2234455555566
Q ss_pred HHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHH
Q 012108 214 CANLG-SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAA 289 (471)
Q Consensus 214 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 289 (471)
+...| ++++|...++.+.+.. +.+...+..+...+...|++++|+..++++.. .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 66666 6666666666666554 34455566666666666666666666655433 2345555566666777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHhhcCCHHHHHH
Q 012108 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFG-------VTRKLEHYGCMVDLLGRARLLDRAIE 362 (471)
Q Consensus 290 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~ 362 (471)
...+++..... +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|...|++++|.+
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777766652 33456666677777777777777777777665211 12335566677777777777777777
Q ss_pred HHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH-HhcCCH
Q 012108 363 LIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY-ASCGQW 424 (471)
Q Consensus 363 ~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 424 (471)
.+++. .. +.+...+..+...+...|++++|...++++.+..|. ++..+..++.++ ...|+.
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCch
Confidence 77665 22 234556666777777777777777777777777776 677777777766 344443
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=4.9e-19 Score=168.77 Aligned_cols=376 Identities=13% Similarity=-0.001 Sum_probs=302.5
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHhc----cCCHhHHHHHhcccCC-CCcccHHHHHHHHHc----CCCHHHHHHHH
Q 012108 29 GLMLHGQTIKTGFCGHVYVQTALLKMYGS----LRCIDDAFKVFEKMPE-KDIIAWNSMLDAFAS----CGQMDHAMKLI 99 (471)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 99 (471)
+.+.+....+. .+..++..+...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|...|
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 34445544443 377778888888887 8999999999998764 467788888899988 89999999999
Q ss_pred hcCCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHh----CCCHHHHHHHHHhccc-cC
Q 012108 100 DLMPLK-DVTSFNIMISGYAR----IGKIHSARYIFDKVPAK-DVVSWNSLILAYTN----AGEMEKAGEMFKKMLV-KN 168 (471)
Q Consensus 100 ~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~ 168 (471)
++.... ++..+..+...|.. .+++++|...|++.... ++..+..|...|.. .+++++|.+.|++... .+
T Consensus 103 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~ 182 (490)
T 2xm6_A 103 KKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN 182 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 987655 77888888899988 88999999999998554 56778888888887 8899999999999844 47
Q ss_pred hHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchh
Q 012108 169 VITWNTMVTGYLR----SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN----LGSLETGARIHVYATDNGLASNPH 240 (471)
Q Consensus 169 ~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 240 (471)
...+..+...|.. .+++++|.++|++..+.| +...+..+...+.. .+++++|..+++...+.| ++.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7788888888888 899999999999998865 45666677777765 789999999999998765 455
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHH
Q 012108 241 ATTALIDMYAK----CGSIEQSLEVFYKSQV-KDVFCWNAMILGLALH-----GYGYAALKLLGEMNDSCVKADDITFIG 310 (471)
Q Consensus 241 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~ 310 (471)
.+..+...|.. .++.++|+..|++... .+...+..+...|... +++++|...|++..+.| +...+..
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 67778888887 8999999999988665 4677888888888887 89999999999998865 4566777
Q ss_pred HHHHHhccC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 012108 311 LLSACSHAG---LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR----ARLLDRAIELIEAMPFEPTESILGALLSAC 383 (471)
Q Consensus 311 l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 383 (471)
+...+...| +.++|.+.|++..+ . .++..+..|...|.. .+++++|.+.|++.-...++..+..|...|
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y 409 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 777777656 88999999999988 2 467788888888988 899999999999883334677888888888
Q ss_pred hh----cCCchHHHHHHHHHHHcCCCC--CchhHHHHHHHHHh
Q 012108 384 VI----HQDLEIGDRVAKMVCAKSNYL--SDGELMMFANLYAS 420 (471)
Q Consensus 384 ~~----~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 420 (471)
.. .+++++|...|+++.+.++.+ ++.....+..++..
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 87 899999999999999998541 45555555555443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=7.8e-20 Score=164.96 Aligned_cols=271 Identities=10% Similarity=-0.036 Sum_probs=235.1
Q ss_pred ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 012108 166 VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245 (471)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 245 (471)
..+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3466777888899999999999999999998764 3445566677888899999999999999999875 6678899999
Q ss_pred HHHHHhcC-ChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 012108 246 IDMYAKCG-SIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321 (471)
Q Consensus 246 ~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 321 (471)
...+...| ++++|+..|++... .+...|..+...+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999988654 356789999999999999999999999998763 33456677789999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C----------CCCCHhHHHHHHHHHhhcCCch
Q 012108 322 QEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P----------FEPTESILGALLSACVIHQDLE 390 (471)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----------~~p~~~~~~~l~~~~~~~g~~~ 390 (471)
++|...++++.+ ..+.+...+..+...+...|++++|...++++ . .+....++..+...+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999997 45667889999999999999999999999876 1 1334578899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 391 IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
+|...++++.+..|. ++..+..++.+|.+.|++++|.+.++++.+..+..+
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 999999999999999 999999999999999999999999999988765433
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2.2e-20 Score=171.47 Aligned_cols=296 Identities=9% Similarity=-0.044 Sum_probs=192.3
Q ss_pred hcCCHHHHHH-HHhhcCC--C-----ChhhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHHhcCCHHH
Q 012108 119 RIGKIHSARY-IFDKVPA--K-----DVVSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYLRSQLYIE 187 (471)
Q Consensus 119 ~~g~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 187 (471)
..|++++|.. .+++... | +...+..+...+.+.|++++|...|+++.. .+..+|..+..++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3456666665 5554422 1 233455555666666666666666666522 244555556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 012108 188 VVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267 (471)
Q Consensus 188 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (471)
|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+... .. ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~--------~~ 179 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG--------GA 179 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh--------hh
Confidence 666666655542 2344555555555666666666666666655543 2222211111000 00 00
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 012108 268 KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGC 346 (471)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 346 (471)
.....+..+. .+...|++++|...++++....... +..++..+...+...|++++|...++++.+ ..+.+...+..
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~ 256 (368)
T 1fch_A 180 GLGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNK 256 (368)
T ss_dssp ------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred cccHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 0000111223 3338899999999999998753211 478888999999999999999999999987 34556788999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCC-----------chhHHH
Q 012108 347 MVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS-----------DGELMM 413 (471)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ 413 (471)
+..++...|++++|.+.|+++ .. +.+..++..+..++...|++++|...++++.+..|. + ..+|..
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~ 335 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK-SRGPRGEGGAMSENIWST 335 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-C------CCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CCCccccccchhhHHHHH
Confidence 999999999999999999987 33 346788999999999999999999999999998877 4 789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh
Q 012108 414 FANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
++.+|.+.|++++|..++++..
T Consensus 336 l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 336 LRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999998877543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=3.6e-18 Score=164.48 Aligned_cols=404 Identities=9% Similarity=0.003 Sum_probs=258.6
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CCcccHHHHHHHH-H
Q 012108 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDIIAWNSMLDAF-A 87 (471)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~-~ 87 (471)
..|..++.. ...|+++.|..+++++++.. |.+...|..++..+.+.|++++|..+|++... |+...|...+... .
T Consensus 14 ~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 14 DAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 456666653 55667777777777776653 34556666777777777777777777776654 5555555555322 2
Q ss_pred cCCCHHHHHH----HHhcCCC------CChhhHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCh---hhHHHH
Q 012108 88 SCGQMDHAMK----LIDLMPL------KDVTSFNIMISGYAR---------IGKIHSARYIFDKVPA-KDV---VSWNSL 144 (471)
Q Consensus 88 ~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~~~l 144 (471)
..|+.+.|.+ +|+.... .+...|...+....+ .|+++.|..+|++.+. |+. ..|...
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 171 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 3455544443 3433211 133344444444333 4455555555555533 111 111111
Q ss_pred HHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHH------HhCC---CCCCH--------HHH
Q 012108 145 ILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEM------KAGN---VKPDY--------LTV 207 (471)
Q Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------~~~g---~~p~~--------~~~ 207 (471)
.......|. .+...++. .+.+++..|..++.++ .+.. ++|+. ..|
T Consensus 172 ~~~e~~~~~----------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 172 NKYEEGINI----------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHHHHHHCH----------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred HHHHHhhch----------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 110000000 00000110 1234566677666653 2221 24431 344
Q ss_pred HHHHHHHHc----cCCh----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCChH-------HHHHHHhcC
Q 012108 208 TSVLSACAN----LGSL----ETGARIHVYATDNGLASNPHATTALIDMYAK-------CGSIE-------QSLEVFYKS 265 (471)
Q Consensus 208 ~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~ 265 (471)
...+..... .++. +.+..+|++++... +.++..|..++..+.+ .|+++ +|..+|++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 444432221 1232 36778899988874 6678899999988876 79987 899999886
Q ss_pred CC---C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 012108 266 QV---K-DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD-D-ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339 (471)
Q Consensus 266 ~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 339 (471)
.. | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|+++.+. .+.
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~ 388 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ART 388 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTC
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCC
Confidence 53 3 5778999999999999999999999999985 554 2 47888888888999999999999999872 223
Q ss_pred ChhHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCch----hHH
Q 012108 340 KLEHYGCMVDL-LGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG----ELM 412 (471)
Q Consensus 340 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~ 412 (471)
+...|...... +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...|. ++. .|.
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~-~~~~~~~lw~ 467 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL-PPEKSGEIWA 467 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS-CGGGCHHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC-CHHHHHHHHH
Confidence 33444333222 34689999999999987 3334 5788999999999999999999999999998765 444 788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 413 MFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
..+......|+.+.+..+.+++.+.-+.
T Consensus 468 ~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 468 RFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 8888888999999999999999876653
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=3.2e-20 Score=166.86 Aligned_cols=284 Identities=14% Similarity=0.115 Sum_probs=107.9
Q ss_pred ccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 012108 57 SLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPA- 135 (471)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 135 (471)
+.|++++|.++++++..| .+|+.|+.++.+.|++++|++.|.+. +|+.+|..++.++...|++++|+..++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 455666666666666333 36666666666666666666666543 3555666666666666666666665555533
Q ss_pred -CChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 136 -KDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214 (471)
Q Consensus 136 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 214 (471)
+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 3345566666667777776666666642 55556777777777777777777777654 2566667777
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 012108 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLG 294 (471)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 294 (471)
.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777666665 256667777777777777777766555543 233334456677777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 012108 295 EMNDSCVKADDITFIGLLSACSH--AGLVQEGCELFSRMEKDFGVTR------KLEHYGCMVDLLGRARLLDRAIELIEA 366 (471)
Q Consensus 295 ~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (471)
...... +.....|+.+..+|++ .++..+.++.|. +..+++| +...|..++-.|...++++.|....-+
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 776543 3345555555555544 334444444333 2223333 456677777788888888877765544
Q ss_pred C
Q 012108 367 M 367 (471)
Q Consensus 367 ~ 367 (471)
-
T Consensus 308 h 308 (449)
T 1b89_A 308 H 308 (449)
T ss_dssp S
T ss_pred C
Confidence 4
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=4.9e-18 Score=161.86 Aligned_cols=352 Identities=10% Similarity=0.046 Sum_probs=298.5
Q ss_pred CCCcccHHHHHHHHHc----CCCHHHHHHHHhcCCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHH
Q 012108 73 EKDIIAWNSMLDAFAS----CGQMDHAMKLIDLMPLK-DVTSFNIMISGYAR----IGKIHSARYIFDKVPAK-DVVSWN 142 (471)
Q Consensus 73 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~ 142 (471)
..++..+..+...|.. .+++++|+..|++..+. ++..+..+...|.. .++.++|.+.|++..+. ++..+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 115 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQ 115 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3577778888888887 89999999999987655 78889999999999 99999999999998554 667788
Q ss_pred HHHHHHHh----CCCHHHHHHHHHhcccc-ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012108 143 SLILAYTN----AGEMEKAGEMFKKMLVK-NVITWNTMVTGYLR----SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA 213 (471)
Q Consensus 143 ~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 213 (471)
.|...|.. .+++++|.+.|++...+ ++..+..+...|.. .+++++|.+.|++..+.| +...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88888888 88999999999998554 67788888888887 789999999999998865 56777778888
Q ss_pred HHc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHHHHHh--
Q 012108 214 CAN----LGSLETGARIHVYATDNGLASNPHATTALIDMYAK----CGSIEQSLEVFYKSQV-KDVFCWNAMILGLAL-- 282 (471)
Q Consensus 214 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~-- 282 (471)
+.. .++.++|..+|+...+.| ++..+..+...|.. .+++++|..+|++... .+...+..+...|..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Confidence 877 899999999999998875 45677788888886 8899999999998655 467788888888888
Q ss_pred --cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcC
Q 012108 283 --HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA-----GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR 355 (471)
Q Consensus 283 --~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (471)
.+++++|+..|++..+.| +...+..+...+... +++++|...|++..+ . .++..+..+...|...|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLG 342 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCC
Confidence 899999999999998764 456777777777776 899999999999988 2 34567778888887766
Q ss_pred ---CHHHHHHHHHhCCCCCCHhHHHHHHHHHhh----cCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCCH
Q 012108 356 ---LLDRAIELIEAMPFEPTESILGALLSACVI----HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS----CGQW 424 (471)
Q Consensus 356 ---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 424 (471)
++++|.+.|++.-...++..+..+...|.. .+++++|...|+++.+.+ ++..+..|+.+|.+ .+++
T Consensus 343 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 889999999988333577888889999888 899999999999999875 58899999999998 8999
Q ss_pred HHHHHHHHHhhhCCCc
Q 012108 425 EEANRWRNMMNDTGIV 440 (471)
Q Consensus 425 ~~A~~~~~~m~~~~~~ 440 (471)
++|.+.|++..+.++.
T Consensus 420 ~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCC
Confidence 9999999999988854
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=2e-17 Score=165.56 Aligned_cols=381 Identities=12% Similarity=0.079 Sum_probs=293.7
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHHhcc--CCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHc
Q 012108 11 YSFPLLLKAAGILSSSCIGLMLHGQTIKTGF--CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFAS 88 (471)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 88 (471)
.--...++++...|.+.+|.++++++.-.+- ..+....+.++....+. +........++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 3446778889999999999999999983321 12446677777766665 4555555555544322 4558888999
Q ss_pred CCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccC
Q 012108 89 CGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKN 168 (471)
Q Consensus 89 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 168 (471)
.|.+++|..+|++.... ....+.+ +...+++++|.++.++. .++.+|..+..++...|++++|.+.|.+. .|
T Consensus 1062 lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred CCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 99999999999997522 2222222 23788999999999987 45778889999999999999999999775 67
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012108 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248 (471)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (471)
...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....+. + .++...+..+...
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 8888999999999999999999999877754 33333345888999999888644442 2 4566677789999
Q ss_pred HHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 012108 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328 (471)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (471)
|...|++++|..+|... ..|..+...|++.|++++|.+.+++.. +..+|..+..+|...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999985 589999999999999999999999863 5688999999999999999998766
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhh--cCCchHHHHHHHHHHHcCC
Q 012108 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVI--HQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~ 404 (471)
..+ ..++..+..++..|.+.|.+++|+.+++.. +..| ....|+-+...+++ .++..++.+.|..-....+
T Consensus 1274 l~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1274 LHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred Hhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 543 245667789999999999999999999776 4444 34566666666664 4566666666665444333
Q ss_pred -----CCCchhHHHHHHHHHhcCCHHHHHHH
Q 012108 405 -----YLSDGELMMFANLYASCGQWEEANRW 430 (471)
Q Consensus 405 -----~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (471)
. +...|..+.-.|.+.|+++.|...
T Consensus 1348 ~~r~~e-~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1348 VLRAAE-QAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HhHHHH-HHHHHHHHHHHHHhcccHHHHHHH
Confidence 3 567899999999999999999843
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=3.7e-18 Score=153.56 Aligned_cols=277 Identities=10% Similarity=0.066 Sum_probs=106.2
Q ss_pred hccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhc
Q 012108 22 ILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDL 101 (471)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 101 (471)
+.|++++|.+.++++. ++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|.+.++.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4566777777777762 2247777777777777777777777553 5556777777777777777777776666
Q ss_pred CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHH
Q 012108 102 MPLK--DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGY 179 (471)
Q Consensus 102 ~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 179 (471)
.++. ++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|..+ ..|..++.++
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L 158 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTL 158 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHH
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHH
Confidence 5543 445667777777777777777766643 56667777777777777777777777765 4677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012108 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259 (471)
Q Consensus 180 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 259 (471)
.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.-...++..|.+.|++++|+
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHH
Confidence 7777777777777776 2567777777777777777777443332 2233344556777777777777777
Q ss_pred HHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHhccCcHHHHHH
Q 012108 260 EVFYKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEMNDS-CVKA------DDITFIGLLSACSHAGLVQEGCE 326 (471)
Q Consensus 260 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~~ 326 (471)
.+++....- ....|+-|.-+|++- ++++.++.++..... +++| +...|..+...|.+.++++.|..
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 777765442 345566666666554 233433333332222 2222 23456677777777777777654
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2e-18 Score=164.05 Aligned_cols=378 Identities=13% Similarity=-0.018 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHhccCCHhHHHHHhcccCC-----------C-CcccHHHHHHHHHcCCCHHHHHHHHhcCCC-------C
Q 012108 45 VYVQTALLKMYGSLRCIDDAFKVFEKMPE-----------K-DIIAWNSMLDAFASCGQMDHAMKLIDLMPL-------K 105 (471)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 105 (471)
...|+.+..++...|++++|++.|++..+ | ...+|+.+..+|...|++++|...+++... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45566666666667777777666665321 1 223455566666666666666655544321 0
Q ss_pred ----ChhhHHHHHHHHHhc--CCHHHHHHHHhhcCC--C-ChhhHHHHHHH---HHhCCCHHHHHHHHHhccc--c-ChH
Q 012108 106 ----DVTSFNIMISGYARI--GKIHSARYIFDKVPA--K-DVVSWNSLILA---YTNAGEMEKAGEMFKKMLV--K-NVI 170 (471)
Q Consensus 106 ----~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~--~-~~~ 170 (471)
.+.++.....++... +++++|++.|++..+ | ++..+..+..+ +...++.++|++.|++..+ | +..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 123333333333332 234555555555421 1 22233322222 2233444444444444311 1 233
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 012108 171 TWNTMVTGYLR----SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALI 246 (471)
Q Consensus 171 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 246 (471)
++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. |.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 33333322222 233444555554444332 2233344444444455555555555555544443 33334444444
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 012108 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326 (471)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 326 (471)
..|...+....+... ..........+..+.|...+++..... +.+...+..+...+...|++++|.+
T Consensus 289 ~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHH
Confidence 333221111000000 000000111233567888888777652 3345567888889999999999999
Q ss_pred HHHHhHHhcCCCCCh--hHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHc
Q 012108 327 LFSRMEKDFGVTRKL--EHYGCMVD-LLGRARLLDRAIELIEAM-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK 402 (471)
Q Consensus 327 ~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (471)
.|+++.+ ....+.. ..+..+.. .+...|++++|+..|++. .+.|+...... ....+.+++++.++.
T Consensus 356 ~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 356 YFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHh
Confidence 9999887 2222221 12233332 234678999999999876 55665443322 234456778888899
Q ss_pred CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCcceEE
Q 012108 403 SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAGSSVI 448 (471)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 448 (471)
+|. ++.+|..|+.+|...|++++|++.|++..+.+...|.+.+|+
T Consensus 426 ~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 426 NGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CC--CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999 999999999999999999999999999999998888887775
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=7.4e-19 Score=161.20 Aligned_cols=242 Identities=14% Similarity=0.103 Sum_probs=138.2
Q ss_pred CCCHHHHHH-HHhcCCCC-------ChhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCHHHH
Q 012108 89 CGQMDHAMK-LIDLMPLK-------DVTSFNIMISGYARIGKIHSARYIFDKVP---AKDVVSWNSLILAYTNAGEMEKA 157 (471)
Q Consensus 89 ~g~~~~A~~-~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 157 (471)
.|++++|++ .+++.... +...+..+...+.+.|++++|...|+++. +.+..++..+..++...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 356666666 66544322 23456667777777777777777777763 23556777778888888888888
Q ss_pred HHHHHhcc---ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHccCC
Q 012108 158 GEMFKKML---VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTS---------------VLSACANLGS 219 (471)
Q Consensus 158 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------l~~~~~~~~~ 219 (471)
.+.|+++. +.+..++..+...+...|++++|.+.++++.+.... +...+.. .+..+...|+
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 88888773 236677888888888888888888888888775321 1111111 1222336666
Q ss_pred hHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 012108 220 LETGARIHVYATDNGLAS--NPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLG 294 (471)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 294 (471)
+++|...++.+.+.. +. +..++..+...|...|++++|+..|+++.. .+..+|..+...+...|++++|...++
T Consensus 197 ~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 197 FLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 667777766666654 22 355555566666666666666555554322 233445555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 295 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
++.... +.+...+..+..++...|++++|...|+++.+
T Consensus 276 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 276 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 554431 22344445555555555555555555555443
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.8e-17 Score=159.60 Aligned_cols=374 Identities=11% Similarity=0.011 Sum_probs=254.8
Q ss_pred CCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHH-hccCCHhHHHH----HhcccC-----C-CCc
Q 012108 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMY-GSLRCIDDAFK----VFEKMP-----E-KDI 76 (471)
Q Consensus 8 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~-----~-~~~ 76 (471)
-+...|..++..+.+.|+++.|..+|+++++.. |+...|..++... ...|+.++|++ +|+... . ++.
T Consensus 44 ~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~ 121 (530)
T 2ooe_A 44 SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121 (530)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccH
Confidence 344578899999999999999999999999875 5777888777543 35677777665 666542 1 345
Q ss_pred ccHHHHHHHHHc---------CCCHHHHHHHHhcCCCC-Ch---hhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH
Q 012108 77 IAWNSMLDAFAS---------CGQMDHAMKLIDLMPLK-DV---TSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143 (471)
Q Consensus 77 ~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 143 (471)
..|...+....+ .|++++|..+|++.... +. ..|..........|. ..+..++.
T Consensus 122 ~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~------------ 188 (530)
T 2ooe_A 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE------------ 188 (530)
T ss_dssp HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH------------
T ss_pred HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH------------
Confidence 678888777655 78999999999987753 11 122222211111111 11111111
Q ss_pred HHHHHHhCCCHHHHHHHHHhc------c-------ccC--------hHHHHHHHHHHHhc----CCH----HHHHHHHHH
Q 012108 144 LILAYTNAGEMEKAGEMFKKM------L-------VKN--------VITWNTMVTGYLRS----QLY----IEVVDLFDE 194 (471)
Q Consensus 144 l~~~~~~~~~~~~A~~~~~~~------~-------~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~ 194 (471)
.+.+++..|..+++.. . .|+ ...|...+...... ++. .++..+|++
T Consensus 189 -----~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 189 -----DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred -----HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 1223455555554431 1 111 23455544333222 222 367778888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHc-------cCChH-------HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 012108 195 MKAGNVKPDYLTVTSVLSACAN-------LGSLE-------TGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260 (471)
Q Consensus 195 m~~~g~~p~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 260 (471)
.+... +-+...|...+..+.+ .|+++ +|..+++...+.-.+.+...+..++..+.+.|++++|..
T Consensus 264 al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 77652 3355667666666654 68876 888888888863235568888889999999999999999
Q ss_pred HHhcCCC--C-Ch-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhc
Q 012108 261 VFYKSQV--K-DV-FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA-CSHAGLVQEGCELFSRMEKDF 335 (471)
Q Consensus 261 ~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~ 335 (471)
+|+++.. | +. ..|..++..+.+.|+.++|..+|++..+.. +.+...+...+.. +...|+.++|..+|++..+.
T Consensus 343 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~- 420 (530)
T 2ooe_A 343 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK- 420 (530)
T ss_dssp HHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-
T ss_pred HHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-
Confidence 9987554 2 33 478888888888999999999999998752 2223333332222 33589999999999999883
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAM----PFEPT--ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 336 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.+.++..|..++..+.+.|+.++|..+|++. +..|+ ...|...+......|+.+.+..+.+++.+..|.
T Consensus 421 -~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 421 -YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp -HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred -CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3456888999999999999999999999987 22332 347888888888899999999999999988763
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.6e-17 Score=146.23 Aligned_cols=271 Identities=11% Similarity=0.007 Sum_probs=214.5
Q ss_pred HHHHhCCCHHHHHHHHHhccccC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 012108 146 LAYTNAGEMEKAGEMFKKMLVKN----VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLE 221 (471)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 221 (471)
+-....|++..|++.+++....+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 44567889999999888764332 23455678899999999999886654 1 3566777888888889999999
Q ss_pred HHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 012108 222 TGARIHVYATDNGL-ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300 (471)
Q Consensus 222 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (471)
+|.+.++.+...+. |.+...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++...
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999988764 44677788888999999999999999998 567888999999999999999999999999886
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhH
Q 012108 301 VKADDITF---IGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESI 375 (471)
Q Consensus 301 ~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 375 (471)
.|+.... ...+..+...|++++|..+|+++.+ ..+.++..++.+..++.+.|++++|.+.|+++ ...| ++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3553211 2233445566999999999999998 36678889999999999999999999999997 3344 6778
Q ss_pred HHHHHHHHhhcCCchH-HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 012108 376 LGALLSACVIHQDLEI-GDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWR 431 (471)
Q Consensus 376 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (471)
+..++..+...|+.++ +.++++++.+.+|. ++.+. +...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999999999976 67899999999998 66544 3455666666665433
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=8.6e-19 Score=160.63 Aligned_cols=270 Identities=8% Similarity=-0.081 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012108 139 VSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215 (471)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 215 (471)
..+..+...+.+.|++++|.+.|+++.. .+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455555556666666666666665522 244555555555555566666666555555432 223444555555555
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 012108 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGE 295 (471)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (471)
..|++++|...++.+.+.. +.+...+..+. .....+..+...+...|++++|...+++
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC----------------------------------------CCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5555555555555555432 11111111110 0122344557788888999999999999
Q ss_pred HHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 012108 296 MNDSCVK-ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-T 372 (471)
Q Consensus 296 ~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 372 (471)
+...... ++..++..+...+...|++++|.+.|+++.+ ..+.+..+|..+..+|...|++++|.+.|+++ ...| +
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 8876321 1578888999999999999999999999988 34557889999999999999999999999987 3344 5
Q ss_pred HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC-----------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL-----------SDGELMMFANLYASCGQWEEANRWRNM 433 (471)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (471)
..++..+..+|...|++++|...++++++..|.. +...|..+..++...|+.+.+..+.++
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7889999999999999999999999999887551 367899999999999999999887765
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.8e-18 Score=155.76 Aligned_cols=276 Identities=7% Similarity=-0.082 Sum_probs=193.5
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214 (471)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 214 (471)
...+..+...+...|++++|..+|+++.. .+...+..+..++...|++++|...++++.+.. +.+...+..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34455666666777777777777766622 245566666666677777777777777666542 23455566666666
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHH-HH-HHHhcCChHHHHHH
Q 012108 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM-IL-GLALHGYGYAALKL 292 (471)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~ 292 (471)
...|++++|...++.+.+.. +.+...+..+.... ++......+ .. .+...|++++|...
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 66666666666666666543 22222222221100 000011112 22 26677888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-C
Q 012108 293 LGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF-E 370 (471)
Q Consensus 293 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~ 370 (471)
++++.... +.+...+..+...+...|++++|...++++.+ ..+.+...+..+...+...|++++|.+.++++ .. +
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99988763 34677888899999999999999999999987 34556788999999999999999999999987 33 3
Q ss_pred CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC-----------CchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 371 PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL-----------SDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 371 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
.+..++..+...+...|++++|...++++.+..|.. ++..+..++.+|.+.|++++|..++++..+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 457788999999999999999999999999988773 477888999999999999999999887654
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.7e-18 Score=151.24 Aligned_cols=251 Identities=13% Similarity=0.058 Sum_probs=207.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 012108 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDY--LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG 253 (471)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (471)
++-....|++..|+..+++.... .|+. .....+.+++...|+++.|...++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34566789999999998876543 4443 3456678899999999999986654 2 3677888999999999999
Q ss_pred ChHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 012108 254 SIEQSLEVFYKSQ-----VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328 (471)
Q Consensus 254 ~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (471)
+.++|++.++++. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998753 23567788888999999999999999987 457788999999999999999999999
Q ss_pred HHhHHhcCCCCChhH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 329 SRMEKDFGVTRKLEH---YGCMVDLLGRARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 329 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.+..++...|++++|+..++++++..
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999983 244321 123344555669999999999998 345678899999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCHHH-HHHHHHHhhhCCCccc
Q 012108 404 NYLSDGELMMFANLYASCGQWEE-ANRWRNMMNDTGIVKT 442 (471)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~~~ 442 (471)
|. ++.++..++.++...|+.++ +.++++++.+.+|..+
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 99 99999999999999999976 5789999988877654
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=5.8e-16 Score=155.26 Aligned_cols=346 Identities=14% Similarity=0.052 Sum_probs=274.9
Q ss_pred HHHHHHHHHhccCCHhHHHHHhcccCC-CC-----cccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 012108 47 VQTALLKMYGSLRCIDDAFKVFEKMPE-KD-----IIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARI 120 (471)
Q Consensus 47 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 120 (471)
--...++.|...|.+.+|+++++++.- |+ ....+.++.+..+. +..+..+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 345667888899999999999998762 32 24566677776666 5566666666665333 44588889999
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012108 121 GKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200 (471)
Q Consensus 121 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 200 (471)
|.+++|..+|++... .....+.+ +-..+++++|.++.+++. ++.+|..+..++.+.|++++|.+.|.+.
T Consensus 1063 glyEEAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 999999999999742 11112222 237889999999999873 4678889999999999999999999663
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHH
Q 012108 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGL 280 (471)
Q Consensus 201 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 280 (471)
-|...|..++.++.+.|++++|.+++...++.. +++...+.++.+|.+.+++++...+. ..++...|..+...|
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 467788889999999999999999999988764 44444556999999999999655543 345667788899999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 012108 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRA 360 (471)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 360 (471)
...|++++|..+|... ..|..+...+.+.|+++.|.+.+++.. +..+|..+..+|...|++..|
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999985 379999999999999999999998873 357899999999999999999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc--CCHHHHHHHHH
Q 012108 361 IELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC--GQWEEANRWRN 432 (471)
Q Consensus 361 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 432 (471)
......+ ..++..+..++..|.+.|.+++|+++++..+..++. ....|..|+.+|.+. ++..++.++|.
T Consensus 1270 ~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1270 QMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9887754 345566678999999999999999999999999877 888888888888764 45555666555
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=5.6e-18 Score=155.21 Aligned_cols=256 Identities=12% Similarity=0.075 Sum_probs=169.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHH
Q 012108 107 VTSFNIMISGYARIGKIHSARYIFDKVP---AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYL 180 (471)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 180 (471)
...+......+.+.|++++|...|+++. +.+..++..+..++...|++++|.+.|+++.. .+..+|..+..++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3446666677777777777777777663 34566777777888888888888888877732 35677888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--chhHHHHHHH
Q 012108 181 RSQLYIEVVDLFDEMKAGNVKPDY-----------LTVTSVLSACANLGSLETGARIHVYATDNGLAS--NPHATTALID 247 (471)
Q Consensus 181 ~~~~~~~a~~~~~~m~~~g~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 247 (471)
..|++++|...|+++.+. .|+. ..+..+...+...|++++|...++++.+.. +. +..++..+..
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 888888888888887764 2322 122334667777888888888888887765 33 5677777777
Q ss_pred HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 012108 248 MYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEG 324 (471)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 324 (471)
.|...|++++|++.|+++.. .+..+|..+...|...|++++|+..|+++.... +.+..++..+..+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 77777888877777776443 356677777777777777777777777777642 33466777777777777888888
Q ss_pred HHHHHHhHHhcCCC----------CChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 012108 325 CELFSRMEKDFGVT----------RKLEHYGCMVDLLGRARLLDRAIELIEA 366 (471)
Q Consensus 325 ~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (471)
...|+++.+...-. .+...|..+..++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 87777776521110 0245566666666666666666665544
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=3.9e-17 Score=155.12 Aligned_cols=376 Identities=8% Similarity=-0.095 Sum_probs=232.4
Q ss_pred CcccHHHHHHHHhhccchhHHHHHHHHHHHh-----c--cCC-chhHHHHHHHHHhccCCHhHHHHHhcccCC-------
Q 012108 9 DNYSFPLLLKAAGILSSSCIGLMLHGQTIKT-----G--FCG-HVYVQTALLKMYGSLRCIDDAFKVFEKMPE------- 73 (471)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 73 (471)
....|+.|...+...|++++|++.+++.++. + ..| ...+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888999999999999999999987653 1 122 346789999999999999999999887542
Q ss_pred C----CcccHHHHHHHHHc--CCCHHHHHHHHhcCCC--C-ChhhHHHHHHH---HHhcCCHHHHHHHHhhcCC---CCh
Q 012108 74 K----DIIAWNSMLDAFAS--CGQMDHAMKLIDLMPL--K-DVTSFNIMISG---YARIGKIHSARYIFDKVPA---KDV 138 (471)
Q Consensus 74 ~----~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~---~~~ 138 (471)
+ ...++..+..++.. .+++++|++.|++... | ++..+..+..+ +...++.++|++.+++..+ .+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 23456655555554 4579999999998763 3 55566655555 3456777888888888733 345
Q ss_pred hhHHHHHHHHHh----CCCHHHHHHHHHhcc---ccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012108 139 VSWNSLILAYTN----AGEMEKAGEMFKKML---VKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVL 211 (471)
Q Consensus 139 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 211 (471)
.++..+...+.. .+++++|.+.+++.. ..+..++..+...+...|++++|...+++..+.. +-+...+..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 566555554444 467889999999873 3467789999999999999999999999998753 23445555555
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHH
Q 012108 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYA 288 (471)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 288 (471)
.++...+... .... . ..........+..+.|...+++... .+..++..+...+...|++++
T Consensus 289 ~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 289 CCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 5543211110 0000 0 0011111112235667777665433 456788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 012108 289 ALKLLGEMNDSCVKADDI--TFIGLLS-ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365 (471)
Q Consensus 289 a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 365 (471)
|+..|++.......|... .+..+.. .....|+.++|+..|++..+ +.|+.......+ ..+.++++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~ 420 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHH
Confidence 999999998764333221 2233332 23567999999999999887 344433222222 23333443
Q ss_pred hC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHH
Q 012108 366 AM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414 (471)
Q Consensus 366 ~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 414 (471)
+. . .+.++.+|..+...+...|++++|++.|+++++.++. +|....-+
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~-~p~a~~~~ 470 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL-IPSASSWN 470 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcHhhcC
Confidence 33 2 2446789999999999999999999999999999887 55554433
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=5.4e-17 Score=146.06 Aligned_cols=254 Identities=11% Similarity=0.024 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHHh
Q 012108 108 TSFNIMISGYARIGKIHSARYIFDKVP---AKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYLR 181 (471)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 181 (471)
..+......+...|++++|..+|+++. +.+...+..+..++...|++++|.+.|+++.. .+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 345555666666666666666666652 23556666777777778888888887777632 356677778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHH--------------HH-HHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 012108 182 SQLYIEVVDLFDEMKAGNVKPDY-LTVTSV--------------LS-ACANLGSLETGARIHVYATDNGLASNPHATTAL 245 (471)
Q Consensus 182 ~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 245 (471)
.|++++|.+.++++.+.. |+. ..+..+ .. .+...|++++|...++.+.+.. +.+...+..+
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 888888888888877653 222 222222 22 3667788888888888887765 5567777778
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 012108 246 IDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322 (471)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 322 (471)
...|...|++++|++.++++.. .+..++..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 8888888888888877776543 345667777777777777777777777776642 334566777777777777777
Q ss_pred HHHHHHHHhHHhcCCCC------------ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 323 EGCELFSRMEKDFGVTR------------KLEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 323 ~a~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
+|.+.++++.+.. +. +...+..+..++.+.|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777776621 11 3556666666777777777777666544
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.6e-16 Score=134.24 Aligned_cols=229 Identities=7% Similarity=-0.078 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CchhHHHHHH
Q 012108 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA--SNPHATTALI 246 (471)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 246 (471)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++.+.+.... ++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3455566666666666666666666666554 45555666666666666666666666665543210 0000
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 012108 247 DMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCE 326 (471)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 326 (471)
....++..+...+...|++++|...+++.... .|+. ..+...|++++|..
T Consensus 77 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 ---------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence 00244555556666666666666666666653 3332 23445567777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC
Q 012108 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (471)
.++++.. ..+.+...+..+...+...|++++|...++++ . .+.+..++..+...+...|++++|...++++++..|
T Consensus 127 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 127 KAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 7777766 33345666777777777777777777777776 2 233566777777888888888888888888888887
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 405 YLSDGELMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
. ++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 205 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 N-FVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 7 77888888888888888888888888876655
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.6e-16 Score=135.50 Aligned_cols=223 Identities=10% Similarity=-0.001 Sum_probs=155.4
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhccc--cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 012108 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLV--KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV--KPD----YLTVTS 209 (471)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~ 209 (471)
...+..+...+...|++++|.+.|++... .+...|..+..++...|++++|...+++..+... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45778889999999999999999999832 6788999999999999999999999999876421 122 467778
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 012108 210 VLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289 (471)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 289 (471)
+...+...|++++|...++.+.+.. |+. ..+. ..|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~-------------------------------~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILT-------------------------------KLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHH-------------------------------HHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHH-------------------------------HHhHHHHH
Confidence 8888889999999999999888764 332 2233 33444555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 012108 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P 368 (471)
Q Consensus 290 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 368 (471)
...++++.... +.+...+..+...+...|++++|...++++.+ ..+.+...+..+..+|...|++++|.+.+++. .
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555431 12334455566666666666666666666665 23344566666666666667777766666665 2
Q ss_pred C-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 369 F-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 369 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
. +.+...+..+..++...|++++|...++++.+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 2 2345667777777777777777877777777776
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=3.3e-16 Score=147.03 Aligned_cols=378 Identities=11% Similarity=0.013 Sum_probs=190.4
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCH---hHHHHHhcccCCCCcccHHHHHHHHHcCC
Q 012108 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI---DDAFKVFEKMPEKDIIAWNSMLDAFASCG 90 (471)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (471)
..+...+.+.|++++|.+.|++..+.| +..++..+...|...|+. ++|...|++..+.++..+..+...+...|
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 345666778889999999999888776 334455566666667777 88888888877667777777777555554
Q ss_pred -----CHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHH---HHHHhhcC-CCChhhHHHHHHHHHhCCC----HHH
Q 012108 91 -----QMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKIHSA---RYIFDKVP-AKDVVSWNSLILAYTNAGE----MEK 156 (471)
Q Consensus 91 -----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~-~~~~~~~~~l~~~~~~~~~----~~~ 156 (471)
++++|+..|++...+ ++..+..+...|...+..+++ .+.+.... ..++.....|...|...+. .++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 677888888776655 555666666666665543332 22222221 1233344444444444442 222
Q ss_pred HHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 012108 157 AGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236 (471)
Q Consensus 157 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (471)
+..+++.....++..+..+...|...|.. .+.++|...|+...+.| +
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~--------------------------------~~~~~A~~~~~~aa~~g-~ 210 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQP--------------------------------EQQAELLKQMEAGVSRG-T 210 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCH--------------------------------HHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCc--------------------------------ccHHHHHHHHHHHHHCC-C
Confidence 22333333333333444444444444400 04455555555555544 3
Q ss_pred CchhHHHHHHHHHHhc----CChHHHHHHHhcCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012108 237 SNPHATTALIDMYAKC----GSIEQSLEVFYKSQVKDVFCWNAMILG-L--ALHGYGYAALKLLGEMNDSCVKADDITFI 309 (471)
Q Consensus 237 ~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 309 (471)
++...+..|...|... +++++|+..|++....++..+..+... + ...+++++|...|++..+.| +...+.
T Consensus 211 ~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~ 287 (452)
T 3e4b_A 211 VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAEL 287 (452)
T ss_dssp SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3343334444444333 455555555555442244455555554 2 34566777777777766655 445555
Q ss_pred HHHHHHhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 012108 310 GLLSACSHAG-----LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR----ARLLDRAIELIEAMPFEPTESILGALL 380 (471)
Q Consensus 310 ~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~ 380 (471)
.+...|. .| ++++|...|++.. +-++.....|..+|.. ..++++|...|++.-...+......|.
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg 361 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIA 361 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHH
Confidence 5555555 34 7777777777665 2345556666666655 337777777777663233444555555
Q ss_pred HHHhh----cCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 381 SACVI----HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 381 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
..|.. ..+.++|..+++++.+.|.. +.......+......++..+|.++.++..+.
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 55553 34777888888888777654 2222222222222234566676666665543
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=1.8e-15 Score=142.00 Aligned_cols=308 Identities=10% Similarity=-0.033 Sum_probs=199.7
Q ss_pred ccHHHHHHHHhhccch---hHHHHHHHHHHHhccCCchhHHHHHHHHHhccC-----CHhHHHHHhcccCCC-CcccHHH
Q 012108 11 YSFPLLLKAAGILSSS---CIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLR-----CIDDAFKVFEKMPEK-DIIAWNS 81 (471)
Q Consensus 11 ~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~-~~~~~~~ 81 (471)
..+..|-..+...|+. ++|.+.|++..+. +...+..+...+...+ ++++|...|++..++ +...+..
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~ 111 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIP 111 (452)
T ss_dssp TGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444455556667777 8999999988854 4455666666455444 788999999987653 5568888
Q ss_pred HHHHHHcCCCHHHH---HHHHhcCCCC-ChhhHHHHHHHHHhcCC----HHHHHHHHhhcCCCChhhHHHHHHHHHhCC-
Q 012108 82 MLDAFASCGQMDHA---MKLIDLMPLK-DVTSFNIMISGYARIGK----IHSARYIFDKVPAKDVVSWNSLILAYTNAG- 152 (471)
Q Consensus 82 li~~~~~~g~~~~A---~~~~~~~~~~-~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~- 152 (471)
|...|...+..+++ .+.+...... ++.....+...|...+. .+.+..+++.....++..+..|...|...|
T Consensus 112 Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~ 191 (452)
T 3e4b_A 112 LAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQ 191 (452)
T ss_dssp HHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 88888877664443 4444433322 67788888999988884 455556666667777779999999999999
Q ss_pred --CHHHHHHHHHhcccc---ChHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HccCCh
Q 012108 153 --EMEKAGEMFKKMLVK---NVITWNTMVTGYLRS----QLYIEVVDLFDEMKAGNVKPDYLTVTSVLSA-C--ANLGSL 220 (471)
Q Consensus 153 --~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~--~~~~~~ 220 (471)
+.++|.+.|++.... +...+..+...|... +++++|..+|++.. .| +...+..+... + ...++.
T Consensus 192 ~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 192 PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCH
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCH
Confidence 999999999998433 444446677777655 79999999999987 33 44455555555 3 468999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-----ChHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHH
Q 012108 221 ETGARIHVYATDNGLASNPHATTALIDMYAKCG-----SIEQSLEVFYKSQVKDVFCWNAMILGLAL----HGYGYAALK 291 (471)
Q Consensus 221 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 291 (471)
++|..+|++..+.| ++..+..|...|. .| ++++|++.|++....++..+..|...|.. ..++++|..
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 99999999998876 5667777887777 45 88999999888774456677777766665 337777888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHH
Q 012108 292 LLGEMNDSCVKADDITFIGLLSACSH----AGLVQEGCELFSRMEK 333 (471)
Q Consensus 292 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 333 (471)
.|++..+.|. ......|...|.. ..+.++|...|+...+
T Consensus 344 ~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 344 HLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8877777653 2334445555442 3467777777777766
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=4.8e-16 Score=130.73 Aligned_cols=196 Identities=14% Similarity=0.001 Sum_probs=143.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012108 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLL 312 (471)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 312 (471)
|+++..+..+...+.+.|++++|+..|++... .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45566666777777777777777777766443 355677777777777888888888888777652 33456777777
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 012108 313 SACSHA-----------GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESILGALL 380 (471)
Q Consensus 313 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 380 (471)
..+... |++++|...++++.+ ..+.+...+..+..+|...|++++|...|++. ....++..+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 777777 999999999999987 34456788888999999999999999999887 2127788889999
Q ss_pred HHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
.++...|++++|+..++++++..|. ++..+..++.++.+.|++++|++.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999 99999999999999999999999988763
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=160.81 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=121.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhc-------cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012108 138 VVSWNSLILAYTNAGEMEKAGEMFKKM-------LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSV 210 (471)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 210 (471)
..+|++||++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 458999999999999999999999776 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcC
Q 012108 211 LSACANLGSL-ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK-----DVFCWNAMILGLALHG 284 (471)
Q Consensus 211 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 284 (471)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++......+ ...+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999988777664444444443333321 1233444555555444
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=1.9e-15 Score=132.35 Aligned_cols=241 Identities=10% Similarity=-0.045 Sum_probs=171.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 012108 181 RSQLYIEVVDLFDEMKAGNVK---PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257 (471)
Q Consensus 181 ~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (471)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777664211 123456666667777777777777777777664 4566677777777777777777
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 012108 258 SLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKD 334 (471)
Q Consensus 258 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (471)
|++.|+++.. .+..++..+...+...|++++|...++++... .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~- 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE- 172 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 7777776543 35677788888888888888888888888875 44444444455555677999999999988877
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCc
Q 012108 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT-----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD 408 (471)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 408 (471)
..+++...+. ++..+...++.++|.+.+++. ...|. ..++..+...+...|++++|...++++.+.+|. +.
T Consensus 173 -~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 249 (275)
T 1xnf_A 173 -KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF 249 (275)
T ss_dssp -HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC
T ss_pred -cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH
Confidence 2344444444 677777888889999988876 33332 578888999999999999999999999998876 43
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHH
Q 012108 409 GELMMFANLYASCGQWEEANRWR 431 (471)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~ 431 (471)
.....++...|++++|++.+
T Consensus 250 ---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 ---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHhhHHHH
Confidence 34466788889999988766
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=160.35 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 012108 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKA---GNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTAL 245 (471)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 245 (471)
..+||++|.+|++.|+.++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 478999999999999999999999999999999999999988888777
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 012108 246 IDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGC 325 (471)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 325 (471)
+.++++.|+. .++|.++|++|...|+.||..+|+.++..+.+. ..+
T Consensus 207 I~glcK~G~~------------------------------~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL 252 (1134)
T 3spa_A 207 LQCMGRQDQD------------------------------AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVL 252 (1134)
T ss_dssp HHHHHHHTCC------------------------------HHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHH
T ss_pred HHHHHhCCCc------------------------------HHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHH
Confidence 7666554432 256778889999999999999999888654443 444
Q ss_pred HHHHHhHHhcCCCCC------hhHHHHHHHHHhhcC
Q 012108 326 ELFSRMEKDFGVTRK------LEHYGCMVDLLGRAR 355 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 355 (471)
+..+++.. ++.|+ ..+...|.+.|.+.+
T Consensus 253 ~~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 253 KAVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 55555533 44443 444556667777655
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=3.2e-15 Score=130.73 Aligned_cols=253 Identities=8% Similarity=-0.074 Sum_probs=127.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 012108 140 SWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPD--YLTVTSVLSAC 214 (471)
Q Consensus 140 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~ 214 (471)
.+......+...|++++|.+.|++..+ .+...+..+..++...|++++|+..+++..+.+..|+ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455666666666666666666622 2344566666666666666666666666665321111 12355556666
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHH
Q 012108 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALK 291 (471)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 291 (471)
...|++++|...++.+.+.. +.+..++..+...|...|++++|+..|++... .+...|..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554 34445555556666666666666655555443 123334334312222234444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 012108 292 LLGEMNDSCVKADDITFIGLLSACSHAGL---VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMP 368 (471)
Q Consensus 292 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 368 (471)
.|+++.+.. +.+...+..+...+...|+ +++|...++++.+.....|+.. -
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~------------------------ 217 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K------------------------ 217 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H------------------------
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h------------------------
Confidence 444444421 1123333333333333333 3334444433333111111110 0
Q ss_pred CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 012108 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421 (471)
Q Consensus 369 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (471)
.....+|..+...|...|++++|...++++++.+|. ++..+..+.......
T Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 218 -DELIEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGLKMKLEHH 268 (272)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC------
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhhhhccc
Confidence 001235566667777778888888888888888777 776666665554443
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=6.1e-15 Score=123.96 Aligned_cols=193 Identities=13% Similarity=0.006 Sum_probs=95.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 012108 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247 (471)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (471)
+...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|...++++.+.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44455555556666666666666666655542 2334455555555666666666666666665554 444555555555
Q ss_pred HHHhc-----------CChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012108 248 MYAKC-----------GSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313 (471)
Q Consensus 248 ~~~~~-----------~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 313 (471)
++... |++++|+..|++... .+...|..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 555555555544322 233444455555555555555555555555443 34455555555
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 012108 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEA 366 (471)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (471)
++...|++++|...|+++.+ ..+.+...+..+..++.+.|++++|.+.+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555554 2233444555555555555555555555544
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=1.1e-14 Score=127.15 Aligned_cols=228 Identities=7% Similarity=-0.114 Sum_probs=144.2
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC----hhhHHHHHHHHHhcCC
Q 012108 212 SACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KD----VFCWNAMILGLALHGY 285 (471)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~ 285 (471)
..+...|++++|...++.+.+.. +.+...+..+...|...|++++|+..+++... ++ ..+|..+...+...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 33444444444444444444432 22333444444444455555555444443322 11 1235566666666677
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 012108 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIE 365 (471)
Q Consensus 286 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 365 (471)
+++|+..+++..+.. +.+...+..+...+...|++++|...++++.+ ..+.+...+..+...+...+++++|.+.|+
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666542 22445677777777778888888888877776 234456666666623333458888888877
Q ss_pred hC-CCCC-CHhHHHHHHHHHhhcCC---chHHHHHHHHHHHcC---CCCC----chhHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 366 AM-PFEP-TESILGALLSACVIHQD---LEIGDRVAKMVCAKS---NYLS----DGELMMFANLYASCGQWEEANRWRNM 433 (471)
Q Consensus 366 ~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (471)
++ ...| +...+..+...+...|+ +++|...++++.+.. |.++ ..+|..++..|.+.|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76 2333 45677777777877787 888999999988775 3311 25788899999999999999999999
Q ss_pred hhhCCCcccC
Q 012108 434 MNDTGIVKTA 443 (471)
Q Consensus 434 m~~~~~~~~~ 443 (471)
+.+.++..+.
T Consensus 247 al~~~p~~~~ 256 (272)
T 3u4t_A 247 ILALDPTNKK 256 (272)
T ss_dssp HHHHCTTCHH
T ss_pred HHhcCccHHH
Confidence 9988766443
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=5.4e-14 Score=122.94 Aligned_cols=224 Identities=8% Similarity=-0.068 Sum_probs=125.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHH
Q 012108 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACAN----LGSLETGARIHVYATDNGLASNPHATT 243 (471)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 243 (471)
++.++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566777777777778888888888777763 234556666666776 777777777777777664 455666
Q ss_pred HHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012108 244 ALIDMYAK----CGSIEQSLEVFYKSQV-KDVFCWNAMILGLAL----HGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314 (471)
Q Consensus 244 ~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 314 (471)
.+...|.. .+++++|+..|++... .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6666666666655433 244455555555555 555555555555555543 33444444444
Q ss_pred Hhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhh-
Q 012108 315 CSH----AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR----ARLLDRAIELIEAMPFEPTESILGALLSACVI- 385 (471)
Q Consensus 315 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 385 (471)
+.. .+++++|...|++..+ . .++..+..+..+|.. .+++++|.+.|++.-...+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 444 5555555555555554 1 123344444444444 45555555544443111113334444444444
Q ss_pred ---cCCchHHHHHHHHHHHcCC
Q 012108 386 ---HQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 386 ---~g~~~~a~~~~~~~~~~~~ 404 (471)
.+++++|.+.++++.+.+|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 4444455555544444443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=5e-14 Score=121.53 Aligned_cols=195 Identities=13% Similarity=-0.036 Sum_probs=87.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcC
Q 012108 208 TSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHG 284 (471)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 284 (471)
..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.++++.. .+...+..+...+...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 333334444444444444444444332 22333344444444444444444444433221 12334444444444555
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 012108 285 YGYAALKLLGEMNDSCVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363 (471)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 363 (471)
++++|...++++...+..| +...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554422222 2334444555555555555555555555541 222344444444455555555555555
Q ss_pred HHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 364 IEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 364 ~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
++++ .. +.+...+..+...+...|++++|.+.++++.+..|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 4444 11 123334444444444555555555555555555444
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=2.1e-14 Score=130.65 Aligned_cols=245 Identities=9% Similarity=0.005 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012108 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS-LETGARIHVYATDNGLASNPHATTALIDM 248 (471)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (471)
..|+.+...+.+.|++++|++.+++.++.. +-+...|..+..++...|+ +++|...++++++.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 445555556666666666666666665532 2234455555556666664 666666666666654 4455666666666
Q ss_pred HHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCcHHHH
Q 012108 249 YAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH-AGLVQEG 324 (471)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a 324 (471)
+...|++++|+..|+++.. .+..+|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 6666666666666665443 355666666777777777777777777777653 2245667777777666 4444555
Q ss_pred -----HHHHHHhHHhcCCCCChhHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHhHHHHHHHHHhhcC---------
Q 012108 325 -----CELFSRMEKDFGVTRKLEHYGCMVDLLGRAR--LLDRAIELIEAMPFEP-TESILGALLSACVIHQ--------- 387 (471)
Q Consensus 325 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g--------- 387 (471)
++.++++.+ -.+.+...|..+..++...| ++++|.+.+.++...| +...+..++..|.+.|
T Consensus 255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 466777766 23345667777777777776 5777777777664334 4566777777777653
Q ss_pred CchHHHHHHHHH-HHcCCCCCchhHHHHHHHHHh
Q 012108 388 DLEIGDRVAKMV-CAKSNYLSDGELMMFANLYAS 420 (471)
Q Consensus 388 ~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 420 (471)
..++|+++++++ .+.+|. ....|..++..+..
T Consensus 333 ~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTI-RKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHH
Confidence 257888888888 788887 77777777766554
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=2e-13 Score=119.33 Aligned_cols=225 Identities=9% Similarity=-0.045 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHH
Q 012108 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAK----CGSIEQSLEVFYKSQV-KDVFCWNAMI 277 (471)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~ 277 (471)
+...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++... .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455666677777778888888888887773 345667777777887 8888888888876544 3667777777
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012108 278 LGLAL----HGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH----AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349 (471)
Q Consensus 278 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (471)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+ .+ +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHH
Confidence 77877 888888888888877764 56677777777777 7888888888888777 23 4556667777
Q ss_pred HHhh----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhh----cCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHh-
Q 012108 350 LLGR----ARLLDRAIELIEAMPFEPTESILGALLSACVI----HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS- 420 (471)
Q Consensus 350 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 420 (471)
.|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+.++ +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcC
Confidence 7776 78888888888776222345666777777777 7888888888888877653 5677778888887
Q ss_pred ---cCCHHHHHHHHHHhhhCCCc
Q 012108 421 ---CGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 421 ---~g~~~~A~~~~~~m~~~~~~ 440 (471)
.|++++|.+.+++..+.++.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 78888888888888777654
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=5.3e-15 Score=126.84 Aligned_cols=136 Identities=9% Similarity=-0.097 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 012108 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352 (471)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 352 (471)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+ ..+.+...+..+...+.
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHH
Confidence 3333444444444444444444444321 22333444444444445555555555554444 12223333444444444
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHH
Q 012108 353 RARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM 412 (471)
Q Consensus 353 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (471)
+.|++++|.+.++++ . .+.+..++..+...+...|++++|...++++.+..|. ++..+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 231 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALH 231 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHH
Confidence 444444444444433 1 1122334444444444444444444444444444444 333333
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=6.2e-15 Score=126.45 Aligned_cols=202 Identities=11% Similarity=-0.003 Sum_probs=154.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012108 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA 314 (471)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 314 (471)
....+..+...+...|++++|...|+++.. .+...+..+...+...|++++|+..++++.... +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566666667777777766665433 345677777788888888888888888887753 3467788889999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHH
Q 012108 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIG 392 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a 392 (471)
+...|++++|.+.++++.+ ..+.+...+..+...+.+.|++++|.+.++++ . .+.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998 34557788999999999999999999999987 2 334678889999999999999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccC
Q 012108 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTA 443 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 443 (471)
...++++.+..|. ++.++..++.+|.+.|++++|.+.++++.+..+..+.
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 9999999999998 8999999999999999999999999999887765443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.7e-14 Score=123.19 Aligned_cols=200 Identities=9% Similarity=-0.057 Sum_probs=175.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 315 (471)
...+..+...+...|++++|++.|+++.. .+...+..+...+...|++++|.+.++++.... +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788889999999999999999987654 467789999999999999999999999998763 34677888899999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHH
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIG 392 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a 392 (471)
...|++++|.++++++.+ .+..| +...+..+..++...|++++|.+.++++ .. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999987 33444 5778888999999999999999999987 22 34578889999999999999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 393 DRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
...++++.+..|. +...+..++.++.+.|++++|.++++++.+..+..
T Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 9999999999998 88999999999999999999999999998876543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=3.7e-14 Score=119.89 Aligned_cols=197 Identities=9% Similarity=-0.063 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 012108 241 ATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSH 317 (471)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 317 (471)
.+..+...+...|++++|++.|+++.. .+...+..+...+...|++++|...++++.... +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 334444444444444444444443221 233444555555555555555555555555432 2244555666666666
Q ss_pred c-CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHH
Q 012108 318 A-GLVQEGCELFSRMEKDFGVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 318 ~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~ 393 (471)
. |++++|...++++.+ .+..| +...+..+..++...|++++|.+.++++ .. +.+...+..+...+...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 6 666666666666665 22222 2455666666666666666666666665 22 224566666777777777777777
Q ss_pred HHHHHHHHcCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 394 RVAKMVCAKSN-YLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 394 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
..++++.+..| . ++..+..++..+...|+.+.|..+++.+.+..+.
T Consensus 168 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 168 YYFKKYQSRVEVL-QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 77777777777 5 6667777777777777777777777777655443
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=2.9e-14 Score=129.66 Aligned_cols=230 Identities=10% Similarity=0.007 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcCCC---CChhhHHHHHHHH
Q 012108 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS-IEQSLEVFYKSQV---KDVFCWNAMILGL 280 (471)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~~ 280 (471)
..|..+...+.+.|++++|...++.+++.. +.+..+|..+..++...|+ +++|+..|+++.. .+..+|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777778889999999999999999986 6778899999999999997 9999999998665 4678999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh-cCCHHH
Q 012108 281 ALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR-ARLLDR 359 (471)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 359 (471)
...|++++|+..|++++... +-+...|..+..++...|++++|+..++++.+ -.+.+...|+.+..++.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999863 34678899999999999999999999999998 345578899999999998 666577
Q ss_pred H-----HHHHHhC-CCCC-CHhHHHHHHHHHhhcC--CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC--------
Q 012108 360 A-----IELIEAM-PFEP-TESILGALLSACVIHQ--DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG-------- 422 (471)
Q Consensus 360 A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 422 (471)
| ++.+++. ...| +...|..+...+...| ++++|...++++ +.+|. ++..+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhcccccchH
Confidence 7 4777766 3445 5678888888888887 699999999998 77887 8899999999999875
Q ss_pred -CHHHHHHHHHHh-hhCCCc
Q 012108 423 -QWEEANRWRNMM-NDTGIV 440 (471)
Q Consensus 423 -~~~~A~~~~~~m-~~~~~~ 440 (471)
.+++|.++++++ .+.++.
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHhCch
Confidence 358999999998 666554
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=6.2e-15 Score=137.19 Aligned_cols=264 Identities=10% Similarity=-0.034 Sum_probs=148.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHhccc--c-Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 012108 143 SLILAYTNAGEMEKAGEMFKKMLV--K-NV----ITWNTMVTGYLRSQLYIEVVDLFDEMKAG----NV-KPDYLTVTSV 210 (471)
Q Consensus 143 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~l 210 (471)
.+...+...|++++|.+.|++... | +. ..|..+...+...|++++|...+++..+. +- +.....+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344455555666666665555522 1 11 24555555555555555555555554331 10 1112234444
Q ss_pred HHHHHccCChHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 012108 211 LSACANLGSLETGARIHVYATDNG-----LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGY 285 (471)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (471)
...+...|++++|...++++.+.. .+... .++..+...|...|+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------------------------~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG-------------------------------RALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH-------------------------------HHHHHHHHHHHHcCc
Confidence 444555555555555555443320 01112 244444555555555
Q ss_pred -----------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---
Q 012108 286 -----------------GYAALKLLGEMNDS----CVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK--- 340 (471)
Q Consensus 286 -----------------~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 340 (471)
+++|+..+++.... +..+ ...++..+...+...|++++|...+++..+.....++
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 55555555544321 1111 2235666677777778888887777777652111111
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHhC-C----CC---CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC-----
Q 012108 341 -LEHYGCMVDLLGRARLLDRAIELIEAM-P----FE---PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL----- 406 (471)
Q Consensus 341 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----- 406 (471)
...+..+..+|...|++++|.+.+++. . .. ....++..+...+...|++++|...++++++..+..
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 236667777777888888887777765 1 11 114567777788888888888888888887764331
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 407 SDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
...++..++.+|.+.|++++|.+.+++..+.
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1347777888888888888888888887654
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1.2e-13 Score=116.75 Aligned_cols=207 Identities=10% Similarity=-0.065 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012108 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDM 248 (471)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (471)
...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PD----------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC-----------
Confidence 3445555555555555555555555555432 2234444445555555555555555555554432 22
Q ss_pred HHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 012108 249 YAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH-GYGYAALKLLGEMNDSCVKAD-DITFIGLLSACSHAGLVQEGCE 326 (471)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 326 (471)
+..++..+...+... |++++|...++++...+..|+ ...+..+...+...|++++|..
T Consensus 75 --------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 75 --------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 334455555556666 666666666666665222232 4556666667777777777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-C-CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 327 LFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF-E-PTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
.++++.+ ..+.+...+..+..++...|++++|.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.+..
T Consensus 135 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 7777766 23334666677777777777777777777765 22 2 345556666666777788888888888877777
Q ss_pred CCCCchhH
Q 012108 404 NYLSDGEL 411 (471)
Q Consensus 404 ~~~~~~~~ 411 (471)
|. ++...
T Consensus 213 p~-~~~~~ 219 (225)
T 2vq2_A 213 PY-SEELQ 219 (225)
T ss_dssp TT-CHHHH
T ss_pred CC-CHHHH
Confidence 76 55444
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=2e-14 Score=125.76 Aligned_cols=238 Identities=9% Similarity=-0.133 Sum_probs=151.1
Q ss_pred hCCCHHHHHHHHHhcccc-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 012108 150 NAGEMEKAGEMFKKMLVK-------NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222 (471)
Q Consensus 150 ~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 222 (471)
..|++++|.+.|+++... +..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345667777777666331 34566667777777777777777777776643 2345666667777777777777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 012108 223 GARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300 (471)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (471)
|...++.+.+.. +.+...+..+...|...|++++|...|+++.. |+.......+..+...|++++|...+.+.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777777777664 44566777777777777777777777766543 332233333444456678888888887766542
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh
Q 012108 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR-----KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTES 374 (471)
Q Consensus 301 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 374 (471)
+++...+ .++..+...++.++|...++++.+. .| +...+..+..+|.+.|++++|...|+++ ...|+..
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 3333333 3666667777778888877776641 12 1467777888888888888888888877 4455332
Q ss_pred HHHHHHHHHhhcCCchHHHHHH
Q 012108 375 ILGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~ 396 (471)
.....++...|++++|++.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 22244566777777776665
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.9e-14 Score=133.59 Aligned_cols=269 Identities=9% Similarity=0.001 Sum_probs=160.6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHhccc--c-C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-H
Q 012108 137 DVVSWNSLILAYTNAGEMEKAGEMFKKMLV--K-N----VITWNTMVTGYLRSQLYIEVVDLFDEMKAG----NVKPD-Y 204 (471)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~ 204 (471)
....+......+...|++++|...|++... | + ...+..+...+...|++++|...+++..+. +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344556667778888888888888888732 2 2 246777788888888888888888876442 21121 3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC----C-CchhHHHHHHHHHHhcCC--------------------hHHHH
Q 012108 205 LTVTSVLSACANLGSLETGARIHVYATDNGL----A-SNPHATTALIDMYAKCGS--------------------IEQSL 259 (471)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~--------------------~~~a~ 259 (471)
..+..+...+...|++++|...++.+.+... + ....++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4566667777788888888888877765320 0 113466667777777777 67766
Q ss_pred HHHhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHH
Q 012108 260 EVFYKSQV-----K----DVFCWNAMILGLALHGYGYAALKLLGEMNDSCV-KAD----DITFIGLLSACSHAGLVQEGC 325 (471)
Q Consensus 260 ~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~ 325 (471)
..+++... . ...++..+...+...|++++|...+++...... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 66654322 1 123556666666666777777766666543200 111 124555666666666777776
Q ss_pred HHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHHHhhcCCchHHH
Q 012108 326 ELFSRMEKDFGVTRK----LEHYGCMVDLLGRARLLDRAIELIEAM-------PFEP-TESILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~ 393 (471)
..+++..+.....++ ..++..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666541111111 345556666666666666666666554 1011 1335555666666666666666
Q ss_pred HHHHHHHHcCCC
Q 012108 394 RVAKMVCAKSNY 405 (471)
Q Consensus 394 ~~~~~~~~~~~~ 405 (471)
..++++.+..+.
T Consensus 328 ~~~~~al~~~~~ 339 (406)
T 3sf4_A 328 HFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.61 E-value=1.7e-14 Score=130.04 Aligned_cols=153 Identities=14% Similarity=-0.012 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCC
Q 012108 286 GYAALKLLGEMNDS----CVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----LEHYGCMVDLLGRARL 356 (471)
Q Consensus 286 ~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 356 (471)
+++|...+++.... +..+ ....+..+...+...|++++|.+.++++.+.....++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 56666666554321 1111 1345667777788888888888888877652111111 3367778888888899
Q ss_pred HHHHHHHHHhC-C---CCCC----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC-----CchhHHHHHHHHHhcCC
Q 012108 357 LDRAIELIEAM-P---FEPT----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL-----SDGELMMFANLYASCGQ 423 (471)
Q Consensus 357 ~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~ 423 (471)
+++|.+.+++. . ..++ ..++..+...+...|++++|...++++.+..+.. ...++..++.+|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 98888888776 1 1111 4577788888999999999999999988764431 14477789999999999
Q ss_pred HHHHHHHHHHhhhCC
Q 012108 424 WEEANRWRNMMNDTG 438 (471)
Q Consensus 424 ~~~A~~~~~~m~~~~ 438 (471)
+++|.+.+++..+..
T Consensus 319 ~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 319 HDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999987654
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=8.8e-12 Score=121.00 Aligned_cols=392 Identities=9% Similarity=0.009 Sum_probs=248.6
Q ss_pred CCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCC---HhHHHHHhcccCC-----CCcccH
Q 012108 8 ADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC---IDDAFKVFEKMPE-----KDIIAW 79 (471)
Q Consensus 8 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-----~~~~~~ 79 (471)
-|..+|..+++.+...+.++.+..+|+++++. ++.+...|...+..-.+.|+ ++.+..+|++... |++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 45567888888888888888889999988877 46677788888888888888 8889999888653 666677
Q ss_pred HHHHHHHHcCCCH--------HHHHHHHhcCC------CC-ChhhHHHHHHHHH---------hcCCHHHHHHHHhhcCC
Q 012108 80 NSMLDAFASCGQM--------DHAMKLIDLMP------LK-DVTSFNIMISGYA---------RIGKIHSARYIFDKVPA 135 (471)
Q Consensus 80 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~ 135 (471)
...+....+.++. +...++|+... .+ +...|...+.... ..++++.+..+|+.++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777655554432 22335555422 12 3455666555433 23456778888888754
Q ss_pred CC----hhhHH---HHHHHH----------HhCCCHHHHHHHHHhc------cc---------------c--------Ch
Q 012108 136 KD----VVSWN---SLILAY----------TNAGEMEKAGEMFKKM------LV---------------K--------NV 169 (471)
Q Consensus 136 ~~----~~~~~---~l~~~~----------~~~~~~~~A~~~~~~~------~~---------------~--------~~ 169 (471)
.. ..+|. .+.... -...+++.|...+.++ +. | ..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 21 12222 111110 0012234444444442 00 0 01
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH-HHHHHHHHcCCCCchhH
Q 012108 170 ITWNTMVTGYLRSQ-------LYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGA-RIHVYATDNGLASNPHA 241 (471)
Q Consensus 170 ~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 241 (471)
..|...+..--..+ ..+.+..+|++.+.. .+-....|...+..+...|+.+.|. .+++...... |.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 34444444333222 123456677777664 2345566666666677778888886 8888887653 566667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC-------------C------------ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 012108 242 TTALIDMYAKCGSIEQSLEVFYKSQV-------------K------------DVFCWNAMILGLALHGYGYAALKLLGEM 296 (471)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (471)
+..++....+.|++++|.++|+++.. | ...+|...+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77788888888888888888876543 2 1235777777777788888888888888
Q ss_pred HhC-CCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--
Q 012108 297 NDS-CVKADDITFIGLLSACSHA-GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-- 371 (471)
Q Consensus 297 ~~~-~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-- 371 (471)
.+. + .+....|...+..-.+. ++.+.|..+|+...+. ++.++..+...++.....|+.+.|..+|++. ...|
T Consensus 461 ~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 461 RRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 765 2 11223333322222233 4588888888888873 4456666777788777888888888888876 2223
Q ss_pred --CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 372 --TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 372 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
....|...+..-.+.|+.+.+.++.+++.+..|+
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 2457777777777888888888888888888877
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=1.2e-13 Score=112.91 Aligned_cols=168 Identities=10% Similarity=-0.067 Sum_probs=143.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012108 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 348 (471)
+...|..+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...+..+.. ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 45678888888888888899999898888753 33567788888899999999999999999887 3445677778888
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 012108 349 DLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426 (471)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 426 (471)
..+...++++.|.+.+.+. . .+.+...+..+...+...|++++|++.|+++++.+|. ++.++..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 8888999999999998887 2 2345778888999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhhhCCCc
Q 012108 427 ANRWRNMMNDTGIV 440 (471)
Q Consensus 427 A~~~~~~m~~~~~~ 440 (471)
|++.|++..+.++.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999887654
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.2e-14 Score=133.09 Aligned_cols=286 Identities=10% Similarity=-0.055 Sum_probs=204.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhhHHHHHHHHHhCCCHHHHHHHHHhccc---------cCh
Q 012108 106 DVTSFNIMISGYARIGKIHSARYIFDKVPA--K-D----VVSWNSLILAYTNAGEMEKAGEMFKKMLV---------KNV 169 (471)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~ 169 (471)
....+......+...|++++|...|+++.. | + ...+..+...+...|++++|...|++... ...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344566778888999999999999988833 2 2 24677888889999999999999888621 134
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------hHHHH
Q 012108 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPD----YLTVTSVLSACANLGS--------------------LETGA 224 (471)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a~ 224 (471)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678888899999999999999988765311 112 2366777788888898 89998
Q ss_pred HHHHHHHHc----CC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHH
Q 012108 225 RIHVYATDN----GL-ASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-----KD----VFCWNAMILGLALHGYGYAAL 290 (471)
Q Consensus 225 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~ 290 (471)
..++...+. +. +....++..+...|...|++++|+..+++... ++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888876543 11 12245677888899999999999998877553 11 237888888999999999999
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHH
Q 012108 291 KLLGEMNDS----CVKAD-DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----LEHYGCMVDLLGRARLLDRAI 361 (471)
Q Consensus 291 ~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 361 (471)
..+++.... +..+. ..++..+...+...|++++|...++++.+.....++ ..++..+..+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887643 11111 456777888889999999999999888762211122 557778888899999999999
Q ss_pred HHHHhC-------CCCC-CHhHHHHHHHHHhhcCCchH
Q 012108 362 ELIEAM-------PFEP-TESILGALLSACVIHQDLEI 391 (471)
Q Consensus 362 ~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~ 391 (471)
+.+++. +..+ ...++..+...+...|+...
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 888765 1111 12344445555555555443
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=4.3e-14 Score=133.46 Aligned_cols=209 Identities=6% Similarity=-0.098 Sum_probs=167.6
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 012108 220 LETGARIHVYATDNGLASNPHATTALIDMYAKCGSI-EQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGE 295 (471)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (471)
++++...++...... +.+...+..+...|...|++ ++|++.|++... .+..+|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344445555444332 44566667777777777777 777777766443 3466788888888888888899999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc--------CCHH
Q 012108 296 MNDSCVKADDITFIGLLSACSHA---------GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA--------RLLD 358 (471)
Q Consensus 296 ~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 358 (471)
..+. .|+...+..+...+... |++++|.+.++++.+ -.+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8875 57778888888899998 999999999999988 3455688899999999888 9999
Q ss_pred HHHHHHHhC-CCCC----CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 012108 359 RAIELIEAM-PFEP----TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNM 433 (471)
Q Consensus 359 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (471)
+|.+.|++. ...| +...|..+..+|...|++++|...|+++.+..|. ++..+..+..++...|++++|.+.+++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999987 3345 6788999999999999999999999999999999 899999999999999999999875544
Q ss_pred h
Q 012108 434 M 434 (471)
Q Consensus 434 m 434 (471)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=8.3e-13 Score=121.54 Aligned_cols=159 Identities=9% Similarity=-0.019 Sum_probs=84.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC------CCchhHHH
Q 012108 175 MVTGYLRSQLYIEVVDLFDEMKAGNV-KPD----YLTVTSVLSACANLGSLETGARIHVYATDNGL------ASNPHATT 243 (471)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 243 (471)
....+...|++++|...|++..+.-. .++ ..++..+...+...|+++.|...+++..+... +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556677777777777777655310 122 24556666667777777777777766654310 11123455
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHH
Q 012108 244 ALIDMYAKCGSIEQSLEVFYKSQV-----KD----VFCWNAMILGLALHGYGYAALKLLGEMNDS----CV-KADDITFI 309 (471)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~ 309 (471)
.+...|...|++++|++.|++... ++ ..++..+...|...|++++|+..+++.... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 556666666666666665544322 01 124445555555555555555555554431 11 22233455
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHH
Q 012108 310 GLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
.+...+...|++++|...+++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555555543
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=2.4e-13 Score=125.14 Aligned_cols=286 Identities=9% Similarity=-0.047 Sum_probs=199.8
Q ss_pred HHhCCCHHHHHHHHHhcc--------ccChHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCCCCHHH
Q 012108 148 YTNAGEMEKAGEMFKKML--------VKNVITWNTMVTG--YLRSQLYIEVV-----------DLFDEMKAGNVKPDYLT 206 (471)
Q Consensus 148 ~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~m~~~g~~p~~~~ 206 (471)
+.+.+++++|..+++++. .++...|..++.. ....++.+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 456788888888877761 1233333333322 11223333333 5555554321 11111
Q ss_pred ------HHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----C--
Q 012108 207 ------VTSVLSACANLGSLETGARIHVYATDN----GLAS-NPHATTALIDMYAKCGSIEQSLEVFYKSQV-----K-- 268 (471)
Q Consensus 207 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~-- 268 (471)
+......+...|++++|...++.+.+. +-++ ...++..+...|...|++++|+..+++... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122455677899999999999999764 2112 356788999999999999999988876543 1
Q ss_pred ---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCC
Q 012108 269 ---DVFCWNAMILGLALHGYGYAALKLLGEMNDS----CVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKD---FGV 337 (471)
Q Consensus 269 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 337 (471)
...+++.+...|...|++++|+..+++.... +-.+ ...++..+...|...|++++|...+++..+- .+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2357888899999999999999999987643 1111 1246888899999999999999999988761 133
Q ss_pred -CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHhhcCC---chHHHHHHHHHHHcCCCC
Q 012108 338 -TRKLEHYGCMVDLLGRARLLDRAIELIEAM-------PFEPTESILGALLSACVIHQD---LEIGDRVAKMVCAKSNYL 406 (471)
Q Consensus 338 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~ 406 (471)
+....++..+..+|.+.|++++|.+.+++. +.+.....+..+...+...|+ +++|..++++.. ..+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~- 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYAD- 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHH-
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHH-
Confidence 334677889999999999999999999886 111223345677788888998 777777777651 1122
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 407 SDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
....+..++..|.+.|++++|.+.+++..+.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3557778999999999999999999998763
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.7e-13 Score=127.43 Aligned_cols=268 Identities=13% Similarity=-0.013 Sum_probs=176.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch----hhHHHHHHHHHhCCCHHHHHHHHHhccc---------cChH
Q 012108 107 VTSFNIMISGYARIGKIHSARYIFDKVPA--K-DV----VSWNSLILAYTNAGEMEKAGEMFKKMLV---------KNVI 170 (471)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~ 170 (471)
...+..+...+...|++++|...|+++.. | +. ..+..+...|...|++++|.+.|++... ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34566778889999999999999999843 3 22 4678888999999999999999998732 1446
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCC-----------------hHHHHHHHH
Q 012108 171 TWNTMVTGYLRSQLYIEVVDLFDEMKAG----NV-KPDYLTVTSVLSACANLGS-----------------LETGARIHV 228 (471)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 228 (471)
++..+...+...|++++|...+++..+. +- .....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888999999999999999999998653 11 1223467777788888888 777777776
Q ss_pred HHHHc----CC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 012108 229 YATDN----GL-ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS---- 299 (471)
Q Consensus 229 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 299 (471)
+..+. +. +....++..+...|.. .|++++|...+++....
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~-------------------------------~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYL-------------------------------LGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHH-------------------------------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------------------------cCChHHHHHHHHHHHHHHHhc
Confidence 65432 10 0112234444444444 44555554444444321
Q ss_pred CC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------
Q 012108 300 CV-KADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR----KLEHYGCMVDLLGRARLLDRAIELIEAM------- 367 (471)
Q Consensus 300 ~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 367 (471)
+. ......+..+...+...|++++|...++++.+...... ...++..+..+|...|++++|.+.+++.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 00 00112556666667777777777777766655211111 1455666777777777777777777665
Q ss_pred CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 368 PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 368 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
+..+ ...++..+...+...|++++|...++++.+....
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 1111 1346777788888888888888888888877654
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=2.2e-11 Score=118.22 Aligned_cols=413 Identities=10% Similarity=0.037 Sum_probs=283.2
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--C-CcccHHHHHHHHHcCCC---HHHHHHHHh
Q 012108 27 CIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--K-DIIAWNSMLDAFASCGQ---MDHAMKLID 100 (471)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~ 100 (471)
.+....+++.++.+ +.|...|..++..+.+.++++.+..+|+++.. | ....|...+..-.+.|+ ++.+..+|+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34455667777766 46999999999999999999999999999875 3 55678888888888898 999999999
Q ss_pred cCCC-----CChhhHHHHHHHHHhcCCH--------HHHHHHHhhcC------CC-ChhhHHHHHHHHH---------hC
Q 012108 101 LMPL-----KDVTSFNIMISGYARIGKI--------HSARYIFDKVP------AK-DVVSWNSLILAYT---------NA 151 (471)
Q Consensus 101 ~~~~-----~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~---------~~ 151 (471)
+... +++..|..-+.-..+.++. +...++|+.+. .+ +...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9864 4566666666655554443 33446777642 23 3457777776543 23
Q ss_pred CCHHHHHHHHHhccc-c--Ch-HHH---HHHHHHH----------HhcCCHHHHHHHHHHHHh--CCCC-----------
Q 012108 152 GEMEKAGEMFKKMLV-K--NV-ITW---NTMVTGY----------LRSQLYIEVVDLFDEMKA--GNVK----------- 201 (471)
Q Consensus 152 ~~~~~A~~~~~~~~~-~--~~-~~~---~~l~~~~----------~~~~~~~~a~~~~~~m~~--~g~~----------- 201 (471)
++++.+..+|++.+. | +. .+| ..+.... -...+++.|...+.++.. .++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 457889999999843 2 11 223 2222211 011234445555555322 1111
Q ss_pred ----C-----CH---HHHHHHHHHHHccC-------ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HH
Q 012108 202 ----P-----DY---LTVTSVLSACANLG-------SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL-EV 261 (471)
Q Consensus 202 ----p-----~~---~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~ 261 (471)
| +. ..|...+..--..+ ..+.+..+|++++... +.....|...+..+...|+.++|. ++
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 01 22333333222211 1234567788888764 678889999999999999999996 99
Q ss_pred HhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHhc
Q 012108 262 FYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV---------KAD------------DITFIGLLSACSH 317 (471)
Q Consensus 262 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~~~ 317 (471)
|++... .+...|...+....+.|++++|..+|+++..... .|+ ...|...+....+
T Consensus 367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 987654 3556677888888999999999999999876310 132 2357777777788
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHH
Q 012108 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA-RLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDR 394 (471)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~ 394 (471)
.|+.+.|..+|.++.+.. ..+....|...+..-.+. ++.+.|.++|+.. ..+.+...|...+......|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 899999999999998831 112334444433333344 4589999999987 333456677788888888999999999
Q ss_pred HHHHHHHcCCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 395 VAKMVCAKSNYL--SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 395 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
+|++++...+.+ ....|..++..-.+.|+.+.+..+.+++.+.-+..+
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999987732 456788888888899999999999999988776544
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=2.4e-13 Score=122.39 Aligned_cols=135 Identities=11% Similarity=-0.076 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----h
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDS----CVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----L 341 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 341 (471)
.++..+...+...|++++|...+++.... +..+ ...++..+...+...|++++|...+++..+.....++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 35566666777777777777777766532 1011 1235667777788888888888888877652111111 5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 342 EHYGCMVDLLGRARLLDRAIELIEAM-------PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.++..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...++++.+..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 56777788888888888888888776 1111 1346777888899999999999999998887654
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.2e-13 Score=123.06 Aligned_cols=243 Identities=12% Similarity=0.006 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------C-
Q 012108 169 VITWNTMVTGYLRSQLYIEVVDLFDEMKAG-------NVKPDYLTVTSVLSACANLGSLETGARIHVYATDN------G- 234 (471)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 234 (471)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345556666666666666666666666542 11223345556666667777777777777766543 1
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 012108 235 LASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-----------KDVFCWNAMILGLALHGYGYAALKLLGEMNDS---- 299 (471)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 299 (471)
.+....++..+...|...|++++|+..+++... ....++..+...+...|++++|+..++++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 122345566677777777777777776654321 01223444444445555555555555444332
Q ss_pred --CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 012108 300 --CVKAD-DITFIGLLSACSHAGLVQEGCELFSRMEKDF------GVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370 (471)
Q Consensus 300 --~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 370 (471)
+..|. ..++..+...+...|++++|...++++.+.. ...+......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------------------------- 241 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW------------------------- 241 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH-------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH-------------------------
Confidence 11111 1233444444444455555554444444310 0000000000
Q ss_pred CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 371 PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 371 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
.....+..+...+...+.+.++...++......|. ...++..++.+|.+.|++++|.+++++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 01112222233344556677777777777776666 7778888888888888888888888887654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=6.2e-12 Score=111.81 Aligned_cols=233 Identities=12% Similarity=-0.012 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHHH
Q 012108 169 VITWNTMVTGYLRS----QLY----IEVVDLFDEMKAGNVKPDYLTVTSVLSACA-------NLGSL-------ETGARI 226 (471)
Q Consensus 169 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~ 226 (471)
...|...+....+. ++. ++|...|++.++.. +-+...|..++..+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34566666554443 233 56667777776642 334455555555544 23665 677777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Chh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 012108 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--K-DVF-CWNAMILGLALHGYGYAALKLLGEMNDSCVK 302 (471)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 302 (471)
|++.++.-.+.+...|..++..+.+.|++++|.++|+++.. | +.. .|..++..+.+.|++++|..+|++..+.+ +
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 77776631144555667777777777777777777766443 2 233 66666666667777777777777766642 2
Q ss_pred CCHHHHHHHHHHH-hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHhH
Q 012108 303 ADDITFIGLLSAC-SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P---FEP--TESI 375 (471)
Q Consensus 303 p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~ 375 (471)
++...|....... ...|+.++|..+|+++.+. .+.++..|..++..+.+.|++++|..+|++. . ++| ....
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 2333333322221 1256777777777776652 2335566666666666667777777776665 1 233 2445
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
|..++......|+.+.|..+++++.+..|+
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 666666666667777777777777666665
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.5e-11 Score=109.38 Aligned_cols=215 Identities=7% Similarity=-0.030 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCh-------HHHHHHHhcCCC---C-ChhhHHHHHHHHHh
Q 012108 221 ETGARIHVYATDNGLASNPHATTALIDMYAK-------CGSI-------EQSLEVFYKSQV---K-DVFCWNAMILGLAL 282 (471)
Q Consensus 221 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 282 (471)
++|..+|+++++.. +.++..|..++..+.. .|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666653 5556666666665542 4664 667766665433 2 34566666667777
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh-hcCCHHH
Q 012108 283 HGYGYAALKLLGEMNDSCVKAD-DI-TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG-RARLLDR 359 (471)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 359 (471)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+ ..+++...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 77777777777776663 333 22 566666666667777777777777665 22333444443333322 2567777
Q ss_pred HHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCC-CC--CchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 360 AIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSN-YL--SDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 360 A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
|.++|++. . .+.+...|..++..+.+.|++++|..+|+++++..+ .| ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777665 1 123455666666666667777777777777766521 11 3456666666666677777777777776
Q ss_pred hhCCCc
Q 012108 435 NDTGIV 440 (471)
Q Consensus 435 ~~~~~~ 440 (471)
.+..+.
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 665554
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=1.8e-12 Score=105.77 Aligned_cols=164 Identities=17% Similarity=0.030 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 012108 273 WNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLG 352 (471)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 352 (471)
+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+ ..+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Confidence 3444445555555555555555554431 22445555566666666666666666666665 23334556666666666
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 012108 353 RARLLDRAIELIEAM--PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRW 430 (471)
Q Consensus 353 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (471)
..|++++|.+.++++ ..+.+...+..+...+...|++++|...++++.+..|. ++..+..++.+|...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 667777766666665 12345667777778888888888888888888888887 788888888888889999999988
Q ss_pred HHHhhhCCCc
Q 012108 431 RNMMNDTGIV 440 (471)
Q Consensus 431 ~~~m~~~~~~ 440 (471)
++++.+..+.
T Consensus 167 ~~~~~~~~~~ 176 (186)
T 3as5_A 167 FKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHcCCC
Confidence 8888766544
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=3.4e-12 Score=104.13 Aligned_cols=164 Identities=14% Similarity=-0.023 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 315 (471)
+.+|..+...|...|++++|++.|++..+ .+..++..+...+.+.|++++|...+....... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 44455555555555555555555554332 244555556666666666666666666665542 23445566666667
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHH
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 393 (471)
...++++.+...+.++.+ ..+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+..++.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 777777777777777766 33445666777777777777777777777766 2233 5667777788888888888888
Q ss_pred HHHHHHHHcCCC
Q 012108 394 RVAKMVCAKSNY 405 (471)
Q Consensus 394 ~~~~~~~~~~~~ 405 (471)
+.|+++++.+|+
T Consensus 162 ~~~~~al~~~p~ 173 (184)
T 3vtx_A 162 KYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHTTHH
T ss_pred HHHHHHHhCCcc
Confidence 888888877665
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=7.9e-11 Score=107.82 Aligned_cols=119 Identities=9% Similarity=-0.006 Sum_probs=52.7
Q ss_pred HHHHhCCCHHHHHHHHHhccc--c--Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHH
Q 012108 146 LAYTNAGEMEKAGEMFKKMLV--K--NV----ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV-KPDY----LTVTSVLS 212 (471)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~l~~ 212 (471)
..+...|++++|...+++... | +. .+++.+...+...|++++|...+++..+... .++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344555666666666555411 1 11 1334444555555666666655555443100 0111 11233444
Q ss_pred HHHccCChHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCChHHHHHHHhc
Q 012108 213 ACANLGSLETGARIHVYATDN----GLA--S-NPHATTALIDMYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (471)
.+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455555555555555554432 111 1 122333444445555555555544443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=1.2e-10 Score=106.83 Aligned_cols=225 Identities=9% Similarity=0.001 Sum_probs=115.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----C-CchhHHH
Q 012108 175 MVTGYLRSQLYIEVVDLFDEMKAGNV-KPD----YLTVTSVLSACANLGSLETGARIHVYATDNGL-----A-SNPHATT 243 (471)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 243 (471)
....+...|++++|+..|++..+... .++ ...+..+...+...|+++.|...+++..+... . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456677777777777777655311 122 23455666677777777777777776654210 0 1134555
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 012108 244 ALIDMYAKCGSIEQSLEVFYKSQV-----K----DVFCWNAMILGLALHGYGYAALKLLGEMND-----SCVKADDITFI 309 (471)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~ 309 (471)
.+...|...|++++|++.|++... + ...++..+...|...|++++|+..+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 666666666666666666654322 1 123445555555566666666666655544 21 22244555
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCC---CCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-hHHHHHHHH
Q 012108 310 GLLSACSHAGLVQEGCELFSRMEKDFGV---TRKLEHYGCMVDLLGRARL---LDRAIELIEAMPFEPTE-SILGALLSA 382 (471)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~ 382 (471)
.+...+.+.|++++|...+++..+.... +.....+..+...|...++ +.+|...+++.+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 5556666666666666666665552111 1112233344444444454 55555555554322221 233344444
Q ss_pred HhhcCCchHHHHHHHHHH
Q 012108 383 CVIHQDLEIGDRVAKMVC 400 (471)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~ 400 (471)
|...|++++|...++++.
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 445555555555544443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=9.4e-11 Score=107.51 Aligned_cols=191 Identities=7% Similarity=-0.021 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhccc-----c-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 012108 140 SWNSLILAYTNAGEMEKAGEMFKKMLV-----K-----NVITWNTMVTGYLRSQLYIEVVDLFDEMKAG----NVKP-DY 204 (471)
Q Consensus 140 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~ 204 (471)
++..+..+|...|++++|...+++... + ...+++.+..+|...|++++|.+.|++..+. +-.+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344444555555555555555444411 0 1234555555566666666666555554431 1111 12
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC---hhh
Q 012108 205 LTVTSVLSACANLGSLETGARIHVYATDN----GLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-----KD---VFC 272 (471)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~---~~~ 272 (471)
.++..+..++...|++++|...+++..+. +.+....++..+...|.+.|++++|...+++... .+ ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445555556666666666666655541 1123345555566666666666666666554321 01 122
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 273 WNAMILGLALHGY---GYAALKLLGEMNDSCVKAD-DITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 273 ~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
+..+...+...++ ..+|+..+++ .+..|+ ...+..+...|...|++++|...|+++.+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444445555 5555555554 222222 23455566667777777777777776654
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=2.3e-12 Score=114.75 Aligned_cols=246 Identities=13% Similarity=0.065 Sum_probs=154.7
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhccc--------c---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC
Q 012108 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLV--------K---NVITWNTMVTGYLRSQLYIEVVDLFDEMKAG------NV 200 (471)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~ 200 (471)
..++..+...+...|++++|..+|+++.. . ...++..+...+...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34566777777788888888887777633 1 3356777888888888888888888887653 21
Q ss_pred CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----
Q 012108 201 KP-DYLTVTSVLSACANLGSLETGARIHVYATDN------GL-ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVK---- 268 (471)
Q Consensus 201 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 268 (471)
.| ....+..+...+...|++++|...++.+.+. +. +.....+..+...+...|++++|++++++....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3456777888888999999999998888764 22 234567888999999999999999998765331
Q ss_pred -------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 012108 269 -------DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL 341 (471)
Q Consensus 269 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 341 (471)
...++..+...+...|++++|...++++.... |+. .+..+- ........ ..
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~~----------------~~ 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIWM----------------HA 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHHH----------------HH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHHH----------------HH
Confidence 24578889999999999999999999988641 110 000000 00000000 01
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 342 EHYGCMVDLLGRARLLDRAIELIEAMP-FEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
..+..+...+...+.+.++...++... ..| ...++..+..+|...|++++|...++++++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 112222223333444455555555552 223 3456777888888888888888888888776543
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=5.9e-12 Score=123.67 Aligned_cols=163 Identities=11% Similarity=0.023 Sum_probs=119.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012108 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349 (471)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (471)
..+|+.|...+.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|++.|+++.+ -.+.+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4566667777777777777777777776642 22456677777777777777777777777776 23345667777777
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 012108 350 LLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA 427 (471)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 427 (471)
+|...|++++|++.|++. .+.| +...|..+..++...|++++|+..|+++++.+|+ ++..+..++.+|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 777778888877777776 3344 4667788888888888888888888888888888 788888888888888888888
Q ss_pred HHHHHHhhh
Q 012108 428 NRWRNMMND 436 (471)
Q Consensus 428 ~~~~~~m~~ 436 (471)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=7.1e-12 Score=118.31 Aligned_cols=190 Identities=11% Similarity=-0.039 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHH
Q 012108 203 DYLTVTSVLSACANLGSL-ETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILG 279 (471)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~ 279 (471)
+...+..+...+...|++ ++|...|+++.+.. +.+...+..+...|...|++++|++.|++... |+...+..+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 334444444444555555 55555555554443 33344455555555555555555555544332 333444444455
Q ss_pred HHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCC---C
Q 012108 280 LALH---------GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA--------GLVQEGCELFSRMEKDFGVT---R 339 (471)
Q Consensus 280 ~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~---~ 339 (471)
+... |++++|+..+++..+.. +-+...+..+..++... |++++|.+.|+++.+. .+ .
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 256 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASS 256 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGG
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCccc
Confidence 5555 55556666665555532 22344555555555555 5566666666666551 22 3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHH
Q 012108 340 KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (471)
+...|..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|...+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666666666666666555 2222 3445555555555555555555433
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=4.7e-11 Score=97.16 Aligned_cols=164 Identities=11% Similarity=-0.098 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 315 (471)
...+..+...+...|++++|+..++++.. .+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566778888888999999999988765 356778888888999999999999999988752 44677888888899
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHH
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~ 393 (471)
...|++++|.+.++++.+ ..+.+...+..+..++...|++++|.+.++++ . .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999987 34557788888999999999999999999887 2 2346778888999999999999999
Q ss_pred HHHHHHHHcCCC
Q 012108 394 RVAKMVCAKSNY 405 (471)
Q Consensus 394 ~~~~~~~~~~~~ 405 (471)
..++++.+..|.
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999999988776
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=5e-11 Score=100.91 Aligned_cols=205 Identities=7% Similarity=-0.069 Sum_probs=147.5
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 012108 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMIL 278 (471)
Q Consensus 202 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 278 (471)
.|...+......+...|++++|...|+.+.+...+++...+..+..++...|++++|++.|++... .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 455777788888889999999999999998887437777777788899999999999988887554 35567888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHH
Q 012108 279 GLALHGYGYAALKLLGEMNDSCVKADD-------ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR--KLEHYGCMVD 349 (471)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 349 (471)
.+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.|+++.+ ..+. +...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 8888999999999998888752 2234 3466777778888889999998888886 2233 3566777777
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 012108 350 LLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417 (471)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (471)
+|...|+. .++++ . ...+...+.... ....+.+++|...++++.+..|. ++.+...+...
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 77655543 22222 0 122333443333 33456788899999999999888 77766666554
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=8.1e-11 Score=107.78 Aligned_cols=155 Identities=8% Similarity=-0.044 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC----CCh----hhHHHHHHHHHhCCCHHHHHHHHHhccc-----cCh----HHH
Q 012108 110 FNIMISGYARIGKIHSARYIFDKVPA----KDV----VSWNSLILAYTNAGEMEKAGEMFKKMLV-----KNV----ITW 172 (471)
Q Consensus 110 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~ 172 (471)
.......+...|++++|...+++... .+. ..+..+...+...|++++|.+.+++... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455567788999999888877622 122 1455666778888999999998888732 122 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC----chhH
Q 012108 173 NTMVTGYLRSQLYIEVVDLFDEMKAG----NVK--PD-YLTVTSVLSACANLGSLETGARIHVYATDNGLAS----NPHA 241 (471)
Q Consensus 173 ~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~--p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 241 (471)
+.+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++..+..... ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66778888899999999998887652 221 22 3345567778888899999999998887653221 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHhc
Q 012108 242 TTALIDMYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~ 264 (471)
+..+...+...|++++|...+++
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNR 199 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555666666666666666554
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=4.7e-11 Score=101.06 Aligned_cols=196 Identities=11% Similarity=-0.045 Sum_probs=149.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012108 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQV----KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGL 311 (471)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 311 (471)
+.++..+......+...|++++|+..|++... ++...+..+..++...|++++|+..+++..... +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 34667888889999999999999999987543 566677778889999999999999999998763 2245678888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HhHHHHHH
Q 012108 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKL-------EHYGCMVDLLGRARLLDRAIELIEAM-PFEPT---ESILGALL 380 (471)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 380 (471)
...+...|++++|...++++.+. .+.+. ..|..+...+...|++++|.+.|++. ...|+ ...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 88999999999999999999872 33344 55777888888999999999999887 55665 45677777
Q ss_pred HHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
.++... +..+++++....+. +...|.... ....|.+++|...+++..+..+..+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 777544 44556777776665 555544333 4456778999999999998776543
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=3.6e-10 Score=97.54 Aligned_cols=240 Identities=9% Similarity=-0.001 Sum_probs=122.1
Q ss_pred HHHhCCCHHHHHHHHHhccccCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 012108 147 AYTNAGEMEKAGEMFKKMLVKNV-ITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225 (471)
Q Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 225 (471)
-..-.|++..++.-..++...+. ..-..+.+++...|++... ..-.|....+..+...+ ..+ +..
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~ 87 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIE 87 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHH
Confidence 34456666666665544422221 2222344566666665531 01123322333222222 211 455
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 012108 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-----KDVFCWNAMILGLALHGYGYAALKLLGEMNDSC 300 (471)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (471)
.+++..+.+ +++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~- 165 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA- 165 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 555555444 34444445666666666777777766665522 13345555666666677777777777666653
Q ss_pred CCC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-
Q 012108 301 VKA-----DDITFIGLLSAC--SHAG--LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF- 369 (471)
Q Consensus 301 ~~p-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~- 369 (471)
.| +..+...++.++ ...| +...|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+ ..
T Consensus 166 -~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 -IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred -CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44 244444555442 2223 666666666666542 233222223333566666666666666543 11
Q ss_pred ----------CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCch
Q 012108 370 ----------EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409 (471)
Q Consensus 370 ----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 409 (471)
+.++.++..++......|+ +|.++++++.+..|. ++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~-hp~ 288 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE-HAF 288 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC-CHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC-ChH
Confidence 2244455455544444554 666666666666666 443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=4.4e-11 Score=104.66 Aligned_cols=208 Identities=11% Similarity=0.029 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHH
Q 012108 204 YLTVTSVLSACANLGSLETGARIHVYATDN------GL-ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAM 276 (471)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 276 (471)
..++..+...+...|++++|...++.+.+. +- +....++..+...|...|++++|++.+++..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------- 112 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL---------- 112 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH----------
Confidence 445666666777777777777777776543 11 2234566667777777777777777665432
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----C-CCCChhHHHHHHHH
Q 012108 277 ILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDF-----G-VTRKLEHYGCMVDL 350 (471)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~ 350 (471)
.++.+......+....++..+...+...|++++|...++++.+.. + .+....++..+..+
T Consensus 113 --------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 113 --------------EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp --------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 111111111001122334444444555555555555555444310 0 11123344445555
Q ss_pred HhhcCCHHHHHHHHHhCC----------CCCC-HhHHHHHHHHHhhcCCch------HHHHHHHHHHHcCCCCCchhHHH
Q 012108 351 LGRARLLDRAIELIEAMP----------FEPT-ESILGALLSACVIHQDLE------IGDRVAKMVCAKSNYLSDGELMM 413 (471)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~ 413 (471)
|...|++++|.+.+++.. ..+. ...+..+...+...+... .+...++......|. ...++..
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 257 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT-VNTTLRS 257 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-HHHHHHH
Confidence 555555555555554430 1121 122222222222222222 222222211111222 3456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 012108 414 FANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
++.+|.+.|++++|..++++..+
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777778888888877777654
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=2.3e-10 Score=112.50 Aligned_cols=158 Identities=10% Similarity=0.043 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhccc--c-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 138 VVSWNSLILAYTNAGEMEKAGEMFKKMLV--K-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214 (471)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 214 (471)
...++.|..+|.+.|++++|++.|++.++ | +..+|+.+..+|.+.|++++|++.|++.++.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455555555555555555555555521 2 34455555555555555555555555555432 12244555555555
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHH
Q 012108 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALK 291 (471)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 291 (471)
...|++++|.+.|+++++.. +.+...+..+..+|...|++++|++.|++..+ .+...+..+...+...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 55566666666655555543 34455555555566666666666655554332 244555555666666666666655
Q ss_pred HHHHHH
Q 012108 292 LLGEMN 297 (471)
Q Consensus 292 ~~~~~~ 297 (471)
.+++..
T Consensus 167 ~~~kal 172 (723)
T 4gyw_A 167 RMKKLV 172 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=2.8e-10 Score=87.02 Aligned_cols=129 Identities=16% Similarity=0.076 Sum_probs=84.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhh
Q 012108 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVI 385 (471)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 385 (471)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555556666666666555541 2234445555555566666666666666555 1 22345566667777778
Q ss_pred cCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 386 HQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
.|++++|...++++.+..|. ++..+..++.++.+.|++++|.+.++++.+.++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 88888888888888887777 677788888888888888888888888766543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=3.7e-10 Score=99.37 Aligned_cols=131 Identities=13% Similarity=-0.076 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----
Q 012108 272 CWNAMILGLALH-GYGYAALKLLGEMNDS----CVKAD-DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL---- 341 (471)
Q Consensus 272 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 341 (471)
+++.+...|... |++++|+..|++.... +..+. ..++..+...+...|++++|...|+++.+...-.+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344555555554 6666666666555432 00000 2345556666666666666666666666521111111
Q ss_pred -hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh------HHHHHHHHHh--hcCCchHHHHHHHHHHHc
Q 012108 342 -EHYGCMVDLLGRARLLDRAIELIEAM-PFEPTES------ILGALLSACV--IHQDLEIGDRVAKMVCAK 402 (471)
Q Consensus 342 -~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 402 (471)
..+..+..++...|++++|...|++. .+.|+.. .+..++.++. ..+++++|+..|+++...
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 13455555666666666666666665 3333211 2233344442 234455555555544443
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1e-09 Score=95.87 Aligned_cols=211 Identities=13% Similarity=0.060 Sum_probs=125.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC------
Q 012108 168 NVITWNTMVTGYLRSQLYIEVVDLFDEMKAG------NVKP-DYLTVTSVLSACANLGSLETGARIHVYATDNG------ 234 (471)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 234 (471)
...++..+...+...|++++|...+++..+. +-.| ...++..+...+...|++++|...++++.+..
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3456788888888899999998888887653 2122 34567788888999999999999988876541
Q ss_pred -CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012108 235 -LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLS 313 (471)
Q Consensus 235 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 313 (471)
.+....++..+...|...|++++|+..+++ +++++........+....++..+..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRR------------------------ALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH------------------------HHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHH------------------------HHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 122344555556666666666666555532 1222211111111112346667777
Q ss_pred HHhccCcHHHHHHHHHHhHHhc------CCCC-ChhHHHHHHHHHhhc------CCHHHHHHHHHhCC-CCC-CHhHHHH
Q 012108 314 ACSHAGLVQEGCELFSRMEKDF------GVTR-KLEHYGCMVDLLGRA------RLLDRAIELIEAMP-FEP-TESILGA 378 (471)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~ 378 (471)
.+...|++++|...++++.+.. ...+ ....+..+...+... ..+..+...++... ..| ...++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 7778888888888887776520 1122 233333333333322 23445555555553 223 3457788
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHc
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAK 402 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~ 402 (471)
+...|...|++++|...++++++.
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999999988764
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=9e-10 Score=95.25 Aligned_cols=189 Identities=8% Similarity=-0.087 Sum_probs=116.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC-CHHH
Q 012108 236 ASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--K-D---VFCWNAMILGLALHGYGYAALKLLGEMNDSCV-KA-DDIT 307 (471)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~ 307 (471)
+.++..+..+...+.+.|++++|+..|+++.. | + ...+..+..++.+.|++++|+..|++...... .| ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34556666677777777777777777776554 2 2 44566677777777777777777777766421 11 1344
Q ss_pred HHHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 012108 308 FIGLLSACSH--------AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379 (471)
Q Consensus 308 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 379 (471)
+..+..++.. .|++++|...|+++.+. .+.+......+.......+.. ...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 5556666666 77777777777777762 222222222221111000000 0113456
Q ss_pred HHHHhhcCCchHHHHHHHHHHHcCCCC--CchhHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCcc
Q 012108 380 LSACVIHQDLEIGDRVAKMVCAKSNYL--SDGELMMFANLYASC----------GQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~ 441 (471)
...+...|++++|+..|+++++..|.. .+..+..++.+|... |++++|...++++.+..+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 677778888888888888888877762 234677777778766 77888888888887766543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=4.6e-09 Score=90.67 Aligned_cols=244 Identities=9% Similarity=0.038 Sum_probs=153.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012108 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255 (471)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 255 (471)
++-..-.|++..++.-..++ ....+......+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 34455678888877733222 1122223333455677777776542 11233333444444433 322
Q ss_pred HHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 012108 256 EQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCV-KADDITFIGLLSACSHAGLVQEGCELFSRM 331 (471)
Q Consensus 256 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (471)
|+..|++... ++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666665443 3455556777888888888888888888766543 124566777788888888888888888888
Q ss_pred HHhcCCCC-----ChhHHHHHHHHH--hh--cCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 332 EKDFGVTR-----KLEHYGCMVDLL--GR--ARLLDRAIELIEAM-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 332 ~~~~~~~~-----~~~~~~~l~~~~--~~--~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
.+ ..| +..+...|..++ .. .+++++|..+|+++ ...|+..+-..++.++...|++++|++.++.+.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 244 244445555442 22 33788888888888 3345533334444477888888888888887766
Q ss_pred c----------CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 402 K----------SNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 402 ~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
. +|. ++.++..++.+....|+ +|.++++++.+..|..+
T Consensus 240 ~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 5 366 77777777777777776 78888888887776544
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=2.2e-09 Score=90.48 Aligned_cols=183 Identities=8% Similarity=-0.058 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHH
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQV--KD----VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD----ITF 308 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~ 308 (471)
+..+..+...+...|++++|+..|+++.. |+ ...+..+..++.+.|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566777777888888877776553 21 235666777777778888888877777764 2322 133
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 012108 309 IGLLSACSH------------------AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFE 370 (471)
Q Consensus 309 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 370 (471)
..+..++.. .|++++|...|+++.+ ..+.+...+.+......-.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~------------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRL------------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHH-------------
Confidence 444444432 4566666666666665 2222333222211110000000
Q ss_pred CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 371 PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD---GELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 371 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
......+...+.+.|++++|+..|+++++..|. ++ ..+..++.+|.+.|++++|.+.++.+...++..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 001134566788999999999999999999988 54 578899999999999999999999998877654
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=2.2e-10 Score=100.87 Aligned_cols=205 Identities=9% Similarity=-0.043 Sum_probs=145.9
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHhcCChHHH
Q 012108 219 SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV-------K--DVFCWNAMILGLALHGYGYAA 289 (471)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a 289 (471)
++++|...|+.+ +..|...|++++|...|++... + ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 3456677888888877765432 1 145788888888889999999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHH
Q 012108 290 LKLLGEMNDS----CVKA-DDITFIGLLSACSHA-GLVQEGCELFSRMEKDFGVTRK----LEHYGCMVDLLGRARLLDR 359 (471)
Q Consensus 290 ~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 359 (471)
+..+++.... |-.. ...++..+...|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888887643 2111 134678888899996 9999999999998872111111 4568889999999999999
Q ss_pred HHHHHHhC-CCCCCH--------hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCch-----hHHHHHHHHH--hcCC
Q 012108 360 AIELIEAM-PFEPTE--------SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG-----ELMMFANLYA--SCGQ 423 (471)
Q Consensus 360 A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~ 423 (471)
|...|++. ...|+. ..+..+..++...|++++|...+++.++..|. ... .+..++.+|. ..++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN-FADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCCcHHHHHHHHHHHHHHcCCHHH
Confidence 99999987 223321 15677888899999999999999999988876 222 2445666665 4578
Q ss_pred HHHHHHHHHHhhhCCC
Q 012108 424 WEEANRWRNMMNDTGI 439 (471)
Q Consensus 424 ~~~A~~~~~~m~~~~~ 439 (471)
+++|+..|+++...++
T Consensus 256 ~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHTTSSCCCH
T ss_pred HHHHHHHhccCCccHH
Confidence 9999999988866544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=9.6e-10 Score=95.08 Aligned_cols=202 Identities=9% Similarity=-0.028 Sum_probs=140.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCC--C----Chhh
Q 012108 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASN---PHATTALIDMYAKCGSIEQSLEVFYKSQV--K----DVFC 272 (471)
Q Consensus 202 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~ 272 (471)
.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|...|++++|+..|++... | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455667777888899999999999999999875 334 67888899999999999999999988654 2 1346
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 012108 273 WNAMILGLAL--------HGYGYAALKLLGEMNDSCVKADD-ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEH 343 (471)
Q Consensus 273 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 343 (471)
+..+..++.. .|++++|+..|+++... .|+. .....+ ..+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999885 3432 222111 111111110 0112
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHhhc----------CCchHHHHHHHHHHHcCCCCCc
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-PFEPT----ESILGALLSACVIH----------QDLEIGDRVAKMVCAKSNYLSD 408 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~ 408 (471)
+..+..+|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|. ++
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~ 229 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD-SP 229 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT-CT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC-Ch
Confidence 455667777788888888887776 22232 34566667777655 8889999999999999988 54
Q ss_pred h---hHHHHHHHHHhcCCHHH
Q 012108 409 G---ELMMFANLYASCGQWEE 426 (471)
Q Consensus 409 ~---~~~~l~~~~~~~g~~~~ 426 (471)
. ....+..++.+.|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 3 33344555555555443
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.15 E-value=2e-08 Score=94.74 Aligned_cols=357 Identities=8% Similarity=-0.069 Sum_probs=194.8
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCC-HhHHHHHhcccCC------CCcccHHHHHH
Q 012108 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC-IDDAFKVFEKMPE------KDIIAWNSMLD 84 (471)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~------~~~~~~~~li~ 84 (471)
.|...+..+.. |+++.+.++|++.+.. .|++..|...+....+.++ .+....+|+.... .+...|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 44444444443 5666666666666653 3466666666665555442 2334444444321 23345555554
Q ss_pred HHH----cCCCHHHHHHHHhcCCCCChhhHHHHHHHHH---hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHH
Q 012108 85 AFA----SCGQMDHAMKLIDLMPLKDVTSFNIMISGYA---RIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKA 157 (471)
Q Consensus 85 ~~~----~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 157 (471)
.+. .+|+.+.+.++|++...........+-..|. .......+..+... ..+.+..|
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~-----------------~~~~y~~a 156 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD-----------------TLPIFQSS 156 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH-----------------HHHHHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH-----------------HhHHHHHH
Confidence 433 1344555666655554321111111111111 11111111111111 01123334
Q ss_pred HHHHHhccc----cChHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 012108 158 GEMFKKMLV----KNVITWNTMVTGYLRSQ--L-----YIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARI 226 (471)
Q Consensus 158 ~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 226 (471)
..+++.... .+...|...+.--...+ - .+.+..+|++++... +.+...|...+..+.+.|+.+.|..+
T Consensus 157 r~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 157 FQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444443311 13345555554432221 1 345677888877653 44566677777777788889999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHH-HHHHhcCC----------C--CChhhHHHHHHHHHhcCChHHHHHHH
Q 012108 227 HVYATDNGLASNPHATTALIDMYAKCGSIEQS-LEVFYKSQ----------V--KDVFCWNAMILGLALHGYGYAALKLL 293 (471)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~----------~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 293 (471)
++..... |.+...+... ....+.++. ..+.+... . .....|...+....+.++.+.|..+|
T Consensus 236 ~erAi~~--P~~~~l~~~y----~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~ 309 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYY----GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLF 309 (493)
T ss_dssp HHHHHHH--CCSSHHHHHH----HHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhC--CCcHHHHHHH----HhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998887 4444333322 221111111 11121110 0 12245666777777788899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 012108 294 GEMNDSCVKADDITFIGLLSACSH-AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPT 372 (471)
Q Consensus 294 ~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 372 (471)
++. .. ...+...|...+..-.. .++.+.|..+|+...+. ++.++..+...++...+.|+.+.|..+|+++. ..
T Consensus 310 ~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~ 383 (493)
T 2uy1_A 310 IEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE--KT 383 (493)
T ss_dssp HHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CB
T ss_pred HHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HH
Confidence 998 32 12344444432222222 33699999999999884 33345566777887888899999999999983 35
Q ss_pred HhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 373 ESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
...|...+..-...|+.+.+..++++..+
T Consensus 384 ~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788888777788999999998888774
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=1.4e-10 Score=90.86 Aligned_cols=141 Identities=9% Similarity=-0.069 Sum_probs=106.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 012108 278 LGLALHGYGYAALKLLGEMNDSCVKAD-DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356 (471)
Q Consensus 278 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (471)
..+...|++++|+..+...... .|+ ...+..+...|.+.|++++|++.|+++.+ -.+.++..|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 3444566777888777776653 333 34556677888888888888888888887 344567788888888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHH-HHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 357 LDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRV-AKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 357 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
+++|...|++. .+.| +...+..+...+.+.|++++|.+. ++++++..|. ++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 88888888876 3445 567888888889999998776654 5899999999 88998888888888775
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=3e-10 Score=112.12 Aligned_cols=168 Identities=9% Similarity=-0.056 Sum_probs=86.7
Q ss_pred HccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhc
Q 012108 215 ANLGSLETGARIHVYAT--------DNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALH 283 (471)
Q Consensus 215 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 283 (471)
...|++++|.+.++++. +.. +.+...+..+...|...|++++|++.|++... .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555666666665555 222 33445555555555566666666655555443 2445555555555556
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 012108 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIEL 363 (471)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 363 (471)
|++++|+..|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+ -.+.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665555431 1133445555555555566555 555555554 2233445555555555566666666666
Q ss_pred HHhC-CCCCC-HhHHHHHHHHHhhcC
Q 012108 364 IEAM-PFEPT-ESILGALLSACVIHQ 387 (471)
Q Consensus 364 ~~~~-~~~p~-~~~~~~l~~~~~~~g 387 (471)
|+++ ...|+ ...+..+..++...+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 6555 33443 334444555544433
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=3.4e-09 Score=80.88 Aligned_cols=131 Identities=13% Similarity=0.021 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (471)
.|..+...+...|++++|..+++++...+ +.+...+..+...+...|++++|...++++.+ ..+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCchHHHHHHHHHH
Confidence 46667778888888888888888887653 33566777788888888999999999988887 2345667788888888
Q ss_pred hhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 352 GRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 352 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
...|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8999999999988877 2 2345677888888899999999999999999888765
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=2e-09 Score=104.40 Aligned_cols=160 Identities=11% Similarity=-0.027 Sum_probs=122.7
Q ss_pred cCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 012108 252 CGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELF 328 (471)
Q Consensus 252 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (471)
.|++++|++.|++... .+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988765 356788999999999999999999999998863 335778888999999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhc---CCchHHHHHHHHHHHcC
Q 012108 329 SRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIH---QDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 403 (471)
+++.+ ..+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99988 34456788999999999999999999999987 3334 577888899999999 99999999999999999
Q ss_pred CCCCchhHHHHH
Q 012108 404 NYLSDGELMMFA 415 (471)
Q Consensus 404 ~~~~~~~~~~l~ 415 (471)
|. +...+..+.
T Consensus 159 p~-~~~~~~~l~ 169 (568)
T 2vsy_A 159 VG-AVEPFAFLS 169 (568)
T ss_dssp CC-CSCHHHHTT
T ss_pred Cc-ccChHHHhC
Confidence 98 677776665
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=2.6e-09 Score=93.57 Aligned_cols=171 Identities=8% Similarity=-0.079 Sum_probs=122.9
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 012108 260 EVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR 339 (471)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 339 (471)
..+......+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++... .|
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p 182 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQ 182 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GC
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hc
Confidence 33333333445556667777778888888888888877652 335567777888888888888888888887662 34
Q ss_pred ChhHHHHH-HHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCC--chhHHHH
Q 012108 340 KLEHYGCM-VDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS--DGELMMF 414 (471)
Q Consensus 340 ~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 414 (471)
+....... ...+...++.++|...+++. . .+.+...+..+...+...|++++|...++++++.+|. + ...+..+
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-~~~~~a~~~l 261 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-AADGQTRXTF 261 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-GGGGHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-cccchHHHHH
Confidence 43322222 22355666777777777766 2 2345778888888899999999999999999998887 5 7788899
Q ss_pred HHHHHhcCCHHHHHHHHHHhh
Q 012108 415 ANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~ 435 (471)
+.+|...|+.++|...+++..
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999888887754
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=1.1e-08 Score=85.26 Aligned_cols=162 Identities=12% Similarity=-0.070 Sum_probs=115.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhHHhcCCCCChhHH
Q 012108 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG----LVQEGCELFSRMEKDFGVTRKLEHY 344 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (471)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|...|++..+ . .++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHH
Confidence 45556666666666677777777777776654 45566666666666 5 78888888888766 2 355666
Q ss_pred HHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHHhh----cCCchHHHHHHHHHHHcCCCCCchhHH
Q 012108 345 GCMVDLLGR----ARLLDRAIELIEAM-PFEPT---ESILGALLSACVI----HQDLEIGDRVAKMVCAKSNYLSDGELM 412 (471)
Q Consensus 345 ~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (471)
..|...|.. .+++++|.+.|++. ...|+ +..+..|...|.. .+++++|...|+++.+.+ . ++..+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~-~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS-R-TGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS-C-TTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-C-CHHHHH
Confidence 777777766 77888888888877 33342 6777777777777 778888888888888772 2 466778
Q ss_pred HHHHHHHhc-C-----CHHHHHHHHHHhhhCCCc
Q 012108 413 MFANLYASC-G-----QWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 413 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 440 (471)
.|+.+|... | ++++|..++++..+.|..
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 888888754 3 788888888888777653
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=2.1e-09 Score=89.32 Aligned_cols=163 Identities=6% Similarity=-0.068 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHH----------------HHHHHHhcCChHHHHHHHHHHHhCC
Q 012108 240 HATTALIDMYAKCGSIEQSLEVFYKSQVK---DVFCWNA----------------MILGLALHGYGYAALKLLGEMNDSC 300 (471)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (471)
..+......+...|++++|+..|++.... +...|.. +...+.+.|++++|+..|++..+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445566777888888888888876552 3445555 7777778888888888888777652
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC--HHHHHHHHHhCC-CCCCHhHHH
Q 012108 301 VKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL--LDRAIELIEAMP-FEPTESILG 377 (471)
Q Consensus 301 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~-~~p~~~~~~ 377 (471)
+-+...+..+...+...|++++|...|+++.+ -.+.+...+..+..+|...|+ .+.+...++... ..|....+.
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 161 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 33566777777777888888888888888776 234456677777777655543 344555555552 122223344
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 378 ALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
....++...|++++|+..|+++++..|.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4455566677788888888887777765
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=2.8e-10 Score=89.05 Aligned_cols=129 Identities=9% Similarity=-0.071 Sum_probs=107.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCC
Q 012108 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQD 388 (471)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 388 (471)
|...+...|++++|++.++.... ..+.++..+-.+..+|.+.|++++|.+.|++. .+.| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 44556778899999999998876 22334666778899999999999999999988 4445 67899999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH-HHHhhhCCCccc
Q 012108 389 LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRW-RNMMNDTGIVKT 442 (471)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~~~ 442 (471)
+++|+..|+++++.+|. ++..+..++.+|.+.|++++|.+. +++..+..|..+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 99999999999999999 999999999999999999887665 588888776543
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=2.4e-08 Score=82.83 Aligned_cols=160 Identities=12% Similarity=0.014 Sum_probs=97.8
Q ss_pred HHHHHHhCCCHHHHHHHHHhcccc---ChHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 012108 144 LILAYTNAGEMEKAGEMFKKMLVK---NVITWNT----------------MVTGYLRSQLYIEVVDLFDEMKAGNVKPDY 204 (471)
Q Consensus 144 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 204 (471)
....+...|++++|...|++.... +...|.. +..++.+.|++++|+..|++.++.. +-+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 334455566666666666665322 2233333 7777778888888888888777653 2345
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--hHHHHHHHhcCCCCChh--hHHHHHHHH
Q 012108 205 LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS--IEQSLEVFYKSQVKDVF--CWNAMILGL 280 (471)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~--~~~~l~~~~ 280 (471)
..+..+..++...|++++|...|+++.+.. |.+..++..+..+|...|+ .+.+...++....++.. .+.....++
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 667777777778888888888888877765 5566777777777655543 34455566665554432 233344455
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHH
Q 012108 281 ALHGYGYAALKLLGEMNDSCVKADDIT 307 (471)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~p~~~~ 307 (471)
...|++++|+..|++..+. .|+...
T Consensus 168 ~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 5566777777777776653 555443
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=3.1e-09 Score=104.90 Aligned_cols=169 Identities=13% Similarity=-0.068 Sum_probs=93.7
Q ss_pred HhcCChHHHHHHHhcCC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 012108 250 AKCGSIEQSLEVFYKSQ-----------VKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHA 318 (471)
Q Consensus 250 ~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 318 (471)
...|++++|++.+++.. ..+...+..+...+...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666665543 2234455555666666666666666666665532 22444555555666666
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHH
Q 012108 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVA 396 (471)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (471)
|++++|.+.|+++.+ -.+.+...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 223345555566666666666666 6555554 2222 3455556666666666666666666
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 397 KMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
+++.+.+|. +...+..++.++...|+
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 666666665 55566666666555544
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=2.1e-09 Score=86.70 Aligned_cols=64 Identities=8% Similarity=-0.148 Sum_probs=46.2
Q ss_pred CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL-SDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
+...+..+...+...|++++|...|+++++..|.+ ++..+..++.++...|+.++|...|++..
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45666777777777777777777777777777653 35577777777777777777777777654
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=5.1e-09 Score=92.82 Aligned_cols=155 Identities=14% Similarity=0.028 Sum_probs=100.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC---C-Chh
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMNDS----CVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVT---R-KLE 342 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~-~~~ 342 (471)
+|+.+...|...|++++|+..|++.... |-.. ...++..+...|.. |++++|+..|++..+...-. + ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 5566666777777777777777765432 2111 13456677777877 88999888888877621111 1 145
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C------CCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCc----hh
Q 012108 343 HYGCMVDLLGRARLLDRAIELIEAM-P------FEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD----GE 410 (471)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 410 (471)
++..+...|.+.|++++|.+.|++. . ..+. ...+..++.++...|++++|...|++.+ ..|.... ..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 6778888888899999998888876 1 1111 2256666677778899999999999988 7765211 12
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 012108 411 LMMFANLYASCGQWEEANR 429 (471)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~ 429 (471)
...++.++ ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 33455555 5677666655
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=3.2e-08 Score=86.59 Aligned_cols=161 Identities=10% Similarity=-0.025 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhh-HHHHHHH
Q 012108 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV--KDVFC-WNAMILG 279 (471)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~ 279 (471)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..++++.. |+... .......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445556666667777777777777777665 55666777777777777777777777777655 22221 1122223
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 012108 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359 (471)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 359 (471)
+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+...-..+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 455666666777776666542 3345566666677777777777777777776621111124455666666666666555
Q ss_pred HHHHHH
Q 012108 360 AIELIE 365 (471)
Q Consensus 360 A~~~~~ 365 (471)
|...++
T Consensus 274 a~~~~r 279 (287)
T 3qou_A 274 LASXYR 279 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=1.2e-08 Score=82.16 Aligned_cols=156 Identities=9% Similarity=-0.105 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hhc
Q 012108 242 TTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSA-CSH 317 (471)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 317 (471)
+..+...+...|++++|+..|++... .+...+..+...+...|++++|+..+++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44456666777777777777777664 35566777777777777777777777776554 2333322222111 112
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHHhhcCCchHHH
Q 012108 318 AGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT---ESILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~ 393 (471)
.+....|...++++.+ ..+.++..+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222346777777776 23445777778888888888888888888776 44443 447777888888888888888
Q ss_pred HHHHHHHH
Q 012108 394 RVAKMVCA 401 (471)
Q Consensus 394 ~~~~~~~~ 401 (471)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=1.3e-08 Score=84.80 Aligned_cols=129 Identities=9% Similarity=-0.065 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (471)
..+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...++++.+ ..+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHH
Confidence 345667778888999999999998764 56778888889999999999999999999887 235567788888899
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-C----------------HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 351 LGRARLLDRAIELIEAM-PFEP-T----------------ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 351 ~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
|...|++++|.+.|++. ...| + ...+..+..++...|++++|...++++.+..|.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999998877 2122 2 267788888888999999999999999888877
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=7.9e-08 Score=90.62 Aligned_cols=366 Identities=8% Similarity=-0.037 Sum_probs=211.4
Q ss_pred hcc-chhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CCcccHHHHHHHHHcCCC-HHHHHH
Q 012108 22 ILS-SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDIIAWNSMLDAFASCGQ-MDHAMK 97 (471)
Q Consensus 22 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~ 97 (471)
..| +++.|..+|+.+++.- |. |+++.+..+|++... |++..|...+....+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 4788888888887653 22 899999999999775 888889888887776663 233444
Q ss_pred HHhcCCC------CChhhHHHHHHHHH----hcCCHHHHHHHHhhcCCCChhhHHHHHHHH---HhCCCHHHHHHHHHhc
Q 012108 98 LIDLMPL------KDVTSFNIMISGYA----RIGKIHSARYIFDKVPAKDVVSWNSLILAY---TNAGEMEKAGEMFKKM 164 (471)
Q Consensus 98 ~~~~~~~------~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~ 164 (471)
+|+.... .+...|...+..+. ..|+.+.+.++|++++.........+-..| ....+...+.+++.+.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4444321 14455555555433 235567777777777442111111111111 1111122222222221
Q ss_pred cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHcCCCC
Q 012108 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL--GS-----LETGARIHVYATDNGLAS 237 (471)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~ 237 (471)
.+.+..|..+++++...-...+...|...+..-... +- .+.+..+|++++... +.
T Consensus 150 -----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 150 -----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred -----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 122334444444433210001223444444332211 11 345677899988864 66
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC---------CCCC---
Q 012108 238 NPHATTALIDMYAKCGSIEQSLEVFYKSQV-K-DVFCWNAMILGLALHGYGYAALKLLGEMNDS---------CVKA--- 303 (471)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~p--- 303 (471)
++..|...+..+.+.|+.+.|..+|++... | +...|. .|....+.++. ++.+... +..+
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccc
Confidence 788999999999999999999999986443 2 222222 22222222222 2222211 0011
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC--CCCCCHhHHHHHH
Q 012108 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA-RLLDRAIELIEAM--PFEPTESILGALL 380 (471)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~ 380 (471)
....|...+....+.++.+.|..+|+++ +.. ..+...|......-... ++.+.|..+|+.. ..+.++..+...+
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yi 361 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 1244666666666788899999999999 422 23444454333322233 3699999999877 2222344566677
Q ss_pred HHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
......|+.+.|..+|+++ +. ....|...+..-...|+.+.+..+++++.+
T Consensus 362 d~e~~~~~~~~aR~l~er~----~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRL----EK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHS----CC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH----HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7778899999999999987 33 577888888888888999999998988864
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=2.9e-09 Score=82.86 Aligned_cols=99 Identities=5% Similarity=-0.041 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..|+++++.+|. ++..|..++.+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 445555666666667777777776666 2233 5667777777777777777777777777777777 777777777777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCc
Q 012108 419 ASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
.+.|++++|...|++..+..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 7777777777777777766544
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=4.5e-09 Score=93.14 Aligned_cols=176 Identities=7% Similarity=-0.037 Sum_probs=127.2
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 012108 252 CGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDS----CVKA-DDITFIGLLSACSHAGLVQEGCE 326 (471)
Q Consensus 252 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 326 (471)
.++++.|...|.+ ....|...|++++|...|.+.... |-.+ -..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3566666665543 345566677777777777665432 1111 13467788888999999999999
Q ss_pred HHHHhHHhc---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-----CC--CHhHHHHHHHHHhhcCCchHHHH
Q 012108 327 LFSRMEKDF---GVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-PF-----EP--TESILGALLSACVIHQDLEIGDR 394 (471)
Q Consensus 327 ~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p--~~~~~~~l~~~~~~~g~~~~a~~ 394 (471)
.|++..+-. |... ...++..+..+|.. |++++|++.|++. .+ .+ ...++..+...+...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887622 1111 24577888889988 9999999999876 11 11 14578889999999999999999
Q ss_pred HHHHHHHcCCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 395 VAKMVCAKSNYLS-----DGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 395 ~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
.++++++..+... ...+..++.++...|++++|...+++.. ..+.
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 9999998755411 2366677888889999999999999998 5543
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=6.9e-07 Score=77.94 Aligned_cols=222 Identities=6% Similarity=-0.054 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---CC
Q 012108 185 YIEVVDLFDEMKAGNVKPDY-LTVTSVLSACANLG--SLETGARIHVYATDNGLASNPHATTALIDMY----AKC---GS 254 (471)
Q Consensus 185 ~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 254 (471)
.++|+++++.++.. .|+. ..|+.-...+...+ ++++++..++.+.... +-+..+++.-...+ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 34566666665553 2332 33444444444555 6666666666666554 34444444433333 333 45
Q ss_pred hHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc------HHH
Q 012108 255 IEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGY--AALKLLGEMNDSCVKADDITFIGLLSACSHAGL------VQE 323 (471)
Q Consensus 255 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~~ 323 (471)
+++++++++++.. .+..+|+.-...+.+.|.++ ++++.++++.+... -+...++.-...+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 5566665555443 34455555555555566665 67777777766532 245555555444445454 667
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHhHHHHHHHHHhhcCCchHHHHHHH
Q 012108 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR-AIELIEAM-PF----EPTESILGALLSACVIHQDLEIGDRVAK 397 (471)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 397 (471)
+++.++++.. ..+-|...|+.+...+.+.|+... +.++..++ .. ..++..+..++..+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 7777777666 344566666666666666665333 33444444 11 2345566666666666666666666666
Q ss_pred HHHH-cCCCCCchhHHH
Q 012108 398 MVCA-KSNYLSDGELMM 413 (471)
Q Consensus 398 ~~~~-~~~~~~~~~~~~ 413 (471)
.+.+ .+|. ....|..
T Consensus 283 ~l~~~~Dpi-r~~yW~~ 298 (306)
T 3dra_A 283 LLKSKYNPI-RSNFWDY 298 (306)
T ss_dssp HHHHTTCGG-GHHHHHH
T ss_pred HHHhccChH-HHHHHHH
Confidence 6664 4554 4444443
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=2.4e-07 Score=80.83 Aligned_cols=219 Identities=12% Similarity=0.056 Sum_probs=173.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCC---CChhhHHHHHHHH----Hhc---C
Q 012108 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG--SIEQSLEVFYKSQV---KDVFCWNAMILGL----ALH---G 284 (471)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---~ 284 (471)
....++|+..++.++..+ |-+..+++.-..++...| ++++++++++.+.. .+..+|+.-...+ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 344568999999999886 667778888888898888 99999999988665 3556676655555 555 7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC------
Q 012108 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ--EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL------ 356 (471)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 356 (471)
++++++.+++++.... +-+...++.-...+.+.|.++ ++++.++++.+ ..+.|...|+.....+.+.|.
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 8999999999999863 446777777777777788887 99999999998 455677788877777777776
Q ss_pred HHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchH-HHHHHHHHHHcC---CCCCchhHHHHHHHHHhcCCHHHHHHH
Q 012108 357 LDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEI-GDRVAKMVCAKS---NYLSDGELMMFANLYASCGQWEEANRW 430 (471)
Q Consensus 357 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (471)
++++++.++++ . .+-|...|+.+...+.+.|+... +..+.+++.+.+ +. ++..+..++++|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Confidence 88999998877 3 34477888888888888887544 566777777665 66 788999999999999999999999
Q ss_pred HHHhhh-CCCc
Q 012108 431 RNMMND-TGIV 440 (471)
Q Consensus 431 ~~~m~~-~~~~ 440 (471)
++.+.+ .++.
T Consensus 281 ~~~l~~~~Dpi 291 (306)
T 3dra_A 281 YDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHTTCGG
T ss_pred HHHHHhccChH
Confidence 999875 4543
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=1.5e-08 Score=98.11 Aligned_cols=147 Identities=13% Similarity=-0.030 Sum_probs=111.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 012108 217 LGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLL 293 (471)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 293 (471)
.|++++|...++++.+.. +.+...+..+...|...|++++|++.|++... .+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988775 56788899999999999999999999987654 35678899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 012108 294 GEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA---RLLDRAIELIEAM 367 (471)
Q Consensus 294 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 367 (471)
++..+.. +.+...+..+..++...|++++|.+.++++.+ -.+.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998763 33577888899999999999999999999988 3345678888999999999 9999999999887
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=2.5e-08 Score=83.86 Aligned_cols=182 Identities=13% Similarity=0.002 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Ch---hhHH
Q 012108 203 DYLTVTSVLSACANLGSLETGARIHVYATDNGLAS--NPHATTALIDMYAKCGSIEQSLEVFYKSQV--K-DV---FCWN 274 (471)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~---~~~~ 274 (471)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|++... | +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666778889999999999999999864221 235788899999999999999999998654 3 22 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 012108 275 AMILGLAL------------------HGYGYAALKLLGEMNDSCVKADDI-TFIGLLSACSHAGLVQEGCELFSRMEKDF 335 (471)
Q Consensus 275 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 335 (471)
.+..++.. .|++++|+..|+++.+. .|+.. ........ ..+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHHH--
Confidence 55555554 57899999999999986 44432 22211110 011111111
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 336 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|++++|...++.+...+|.
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 1234567788899999999999887 22333 246778888999999999999999999888877
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=1.4e-07 Score=78.42 Aligned_cols=168 Identities=8% Similarity=-0.014 Sum_probs=108.6
Q ss_pred HHHHHHhccc-cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 012108 157 AGEMFKKMLV-KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG----SLETGARIHVYAT 231 (471)
Q Consensus 157 A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 231 (471)
|.+.|++..+ .++..+..+...|...+++++|..+|++..+.| +...+..+...+.. + +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4555555532 366667777777777777777777777777654 34555556666655 5 6777777777776
Q ss_pred HcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCCC-C----hhhHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 012108 232 DNGLASNPHATTALIDMYAK----CGSIEQSLEVFYKSQVK-D----VFCWNAMILGLAL----HGYGYAALKLLGEMND 298 (471)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 298 (471)
+.| ++..+..|...|.. .+++++|+.+|++.... + +.++..|...|.. .+++++|...|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 45556666666665 66777777777765553 2 4666777777776 6677777777777766
Q ss_pred CCCCCCHHHHHHHHHHHhcc------CcHHHHHHHHHHhHH
Q 012108 299 SCVKADDITFIGLLSACSHA------GLVQEGCELFSRMEK 333 (471)
Q Consensus 299 ~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~ 333 (471)
. ..+...+..|...|... .+.++|...|++..+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5 22334555565555432 267777777777776
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=3.3e-07 Score=80.49 Aligned_cols=162 Identities=7% Similarity=-0.138 Sum_probs=120.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 012108 275 AMILGLALHGYGYAALKLLGEMNDSCV-KADDI----TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----LEHYG 345 (471)
Q Consensus 275 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 345 (471)
..+..+...|++++|..++++...... .|+.. .+..+...+...+++++|...++++.+.....++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999998876421 22221 2334666677788999999999999872122222 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--------CCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC-----CchhH
Q 012108 346 CMVDLLGRARLLDRAIELIEAMP--------FEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL-----SDGEL 411 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~ 411 (471)
.+...|...|++++|...|+++- ..+. ..++..+...|...|++++|...++++++..+.. -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88999999999999998888761 1122 3478889999999999999999999998764331 25688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHhhh
Q 012108 412 MMFANLYASCGQ-WEEANRWRNMMND 436 (471)
Q Consensus 412 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 436 (471)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999988865
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.92 E-value=6.7e-08 Score=84.97 Aligned_cols=165 Identities=6% Similarity=-0.131 Sum_probs=111.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hh
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADD-----ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----LE 342 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 342 (471)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++++.+......+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677788888888888777664222111 12333455567778888888888887752111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC--CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC-----Cc
Q 012108 343 HYGCMVDLLGRARLLDRAIELIEAM-------PFEP--TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL-----SD 408 (471)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~ 408 (471)
+++.+...|...|++++|...+++. +..+ ...++..+...|...|++++|...++++++..+.. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777888888888888888888765 1111 12577888888889999999999998887654221 15
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHhhh
Q 012108 409 GELMMFANLYASCGQWEEA-NRWRNMMND 436 (471)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 436 (471)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888899999999998 776776643
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.91 E-value=3.1e-09 Score=82.74 Aligned_cols=95 Identities=7% Similarity=-0.061 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 012108 343 HYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420 (471)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (471)
.+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..|+++++.+|. ++..+..++.+|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3344444444444444444444443 11 223444444455555555555555555555555555 55555555555555
Q ss_pred cCCHHHHHHHHHHhhhCC
Q 012108 421 CGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~ 438 (471)
.|++++|.+.|++..+..
T Consensus 102 ~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 555555555555554433
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=1.6e-08 Score=76.18 Aligned_cols=106 Identities=8% Similarity=-0.064 Sum_probs=51.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHh
Q 012108 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFE-PTESILGALLSACV 384 (471)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 384 (471)
.+......+.+.|++++|++.|+++.+ -.+.++..|..+..+|.+.|++++|++.|++. .+. .+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 344455555555555555555555554 22334444555555555555555555555444 112 23344444455555
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCchhHHHHH
Q 012108 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415 (471)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (471)
..|++++|++.|+++++.+|. ++..+..|.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 555555555555555555554 444444433
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.89 E-value=3.6e-08 Score=78.32 Aligned_cols=128 Identities=9% Similarity=-0.087 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSAC 383 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 383 (471)
..+..+...+...|++++|...|+++.+ ..+.+...+..+..++...|++++|.+.+++. . .+.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455666677777888888888887776 23445677777777888888888888887776 2 233567788888889
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHH--HHhcCCHHHHHHHHHHhhh
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL--YASCGQWEEANRWRNMMND 436 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 436 (471)
...|++++|...++++.+..|. +...+..+..+ +.+.|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988 77777554444 7788999999999887654
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=2.9e-08 Score=74.77 Aligned_cols=101 Identities=5% Similarity=-0.096 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-PFE-PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
...+......|.+.|++++|++.|++. ... .+...|..+..++...|++++|+..++++++.+|. ++..|..++.+|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 456777888899999999999999887 333 46788888999999999999999999999999999 899999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccc
Q 012108 419 ASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
...|++++|.+.|++..+.+|...
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCH
Confidence 999999999999999988776543
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=1.1e-08 Score=82.55 Aligned_cols=121 Identities=10% Similarity=0.015 Sum_probs=56.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HhhcCCH--H
Q 012108 282 LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL-LGRARLL--D 358 (471)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 358 (471)
..|++++|...+++..... +.+...+..+...+...|++++|...|+++.+. .+.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455555555555555432 224445555555555555555555555555541 12234444444444 4444554 5
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 359 RAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 359 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
+|...++++ ...| +...+..+...+...|++++|...++++.+..|.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 555555444 1122 2344444445555555555555555555555444
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=1e-08 Score=89.52 Aligned_cols=192 Identities=8% Similarity=-0.100 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 239 PHATTALIDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315 (471)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 315 (471)
...+..+...+...|++++|+..|++... .+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444455555555555555555554332 244556666666666666666666666666542 23455666677777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHH
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 395 (471)
...|++++|...|+++.+... .+...+...+....+..+...... ......+++......+.. + ..|++++|.+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEE 157 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH--HTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHH
Confidence 777777777777777665211 011011111111111111111111 112223334333333322 2 36888889888
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHhhhC
Q 012108 396 AKMVCAKSNYLSDGELMMFANLYASC-GQWEEANRWRNMMNDT 437 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 437 (471)
++++.+.+|. +......+...+.+. +.+++|.++|+++.+.
T Consensus 158 ~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888877 666677777767666 7788999999888664
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=8e-08 Score=79.95 Aligned_cols=131 Identities=8% Similarity=-0.108 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 012108 240 HATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAG 319 (471)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 319 (471)
..+..+...+...|++++|+..|++...++..+|..+...+...|++++|+..+++..... +.+...+..+..++...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3455677888899999999999999888888899999999999999999999999988763 446678888899999999
Q ss_pred cHHHHHHHHHHhHHhcCCCCCh----------------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 012108 320 LVQEGCELFSRMEKDFGVTRKL----------------EHYGCMVDLLGRARLLDRAIELIEAM-PFEPTE 373 (471)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 373 (471)
++++|.+.|+++.+ ..+.+. ..+..+..+|.+.|++++|.+.|++. ...|+.
T Consensus 86 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALI--QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHH--TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHH--hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999987 223323 77888889999999999999999887 555654
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=5.8e-08 Score=73.75 Aligned_cols=116 Identities=8% Similarity=-0.032 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHH
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSA 382 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 382 (471)
...+..+...+...|++++|...++++.+ ..+.+...+..+..++...|++++|.+.+++. .. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34555555666666666666666666655 23334555666666666666666666666655 21 2345666777777
Q ss_pred HhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
+...|++++|...++++.+..|. +...+..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 77788888888888888887777 67777777777766653
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=7.4e-08 Score=72.12 Aligned_cols=115 Identities=13% Similarity=0.010 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHH
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSA 382 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 382 (471)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++ . .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666666677777777777777777662 2345566667777777777777777777665 2 23356677777778
Q ss_pred HhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 012108 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG 422 (471)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (471)
+...|++++|...++++.+..|. ++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 88888888888888888888877 7777777777766544
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=6.6e-08 Score=73.10 Aligned_cols=117 Identities=4% Similarity=-0.164 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHH
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSA 382 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 382 (471)
...+..+...+...|+++.|...++++.+ ..+.+...+..+..++...|++++|.+.+++. .. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34566666777777777888777777776 23445667777777777788888888777766 22 3346677888888
Q ss_pred HhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 012108 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424 (471)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 424 (471)
+...|++++|...++++.+..|. ++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 88899999999999999998888 788888888888887765
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=1.7e-08 Score=78.00 Aligned_cols=91 Identities=10% Similarity=-0.131 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 346 CMVDLLGRARLLDRAIELIEAM-PFE-PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
.+...+.+.|++++|...|++. ... .+...|..+..++...|++++|+..|+++++.+|. ++..+..++.+|...|+
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 3334444444444444444443 111 23344444444455555555555555555555555 45555555555555555
Q ss_pred HHHHHHHHHHhhhC
Q 012108 424 WEEANRWRNMMNDT 437 (471)
Q Consensus 424 ~~~A~~~~~~m~~~ 437 (471)
+++|.+.|++..+.
T Consensus 102 ~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 102 LDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=1.3e-06 Score=76.63 Aligned_cols=159 Identities=8% Similarity=-0.069 Sum_probs=117.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHH
Q 012108 244 ALIDMYAKCGSIEQSLEVFYKSQVK---DV------FCWNAMILGLALHGYGYAALKLLGEMNDSCVK-AD----DITFI 309 (471)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~ 309 (471)
..+..+...|++++|...+++.... +. ..+..+...+...|++++|+..+++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788889999999988875442 11 12334666677778999999999998874222 22 23688
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhc----CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HhHH
Q 012108 310 GLLSACSHAGLVQEGCELFSRMEKDF----GVTR-KLEHYGCMVDLLGRARLLDRAIELIEAM-------PFEPT-ESIL 376 (471)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 376 (471)
.+...|...|++++|...|+++.+.. +..+ ...++..+..+|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999999999988421 1122 2447788899999999999999998876 12222 5688
Q ss_pred HHHHHHHhhcCC-chHHHHHHHHHHHc
Q 012108 377 GALLSACVIHQD-LEIGDRVAKMVCAK 402 (471)
Q Consensus 377 ~~l~~~~~~~g~-~~~a~~~~~~~~~~ 402 (471)
..+..++.+.|+ +++|...+++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 889999999995 59999999988764
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=9.2e-08 Score=85.71 Aligned_cols=127 Identities=10% Similarity=-0.035 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---------------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK---------------LEHYGCMVDLLGRARLLDRAIELIEAM-PF 369 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 369 (471)
..+..+...+.+.|++++|...|+++.+. .+.+ ...|..+..+|.+.|++++|...+++. ..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555666666666666666666552 1112 467888888888889999998888887 33
Q ss_pred C-CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 012108 370 E-PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEA-NRWRNMMN 435 (471)
Q Consensus 370 ~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 435 (471)
. .+...+..+..++...|++++|+..|+++++..|. +...+..++.++.+.|++++| ..++++|.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 46778889999999999999999999999999999 899999999999999999998 45666664
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=5.1e-07 Score=79.28 Aligned_cols=163 Identities=7% Similarity=-0.078 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---CCh------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--H
Q 012108 240 HATTALIDMYAKCGSIEQSLEVFYKSQV---KDV------FCWNAMILGLALHGYGYAALKLLGEMNDSCV---KAD--D 305 (471)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~ 305 (471)
..+...+..+...|++++|.+.+.+... ... ..+..+...+...|++++|+..+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566777888888888887764322 111 2234455667778899999999988875321 111 3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHH---hcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C------CCC-C
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEK---DFGVTR--KLEHYGCMVDLLGRARLLDRAIELIEAM-P------FEP-T 372 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~ 372 (471)
.+++.+...|...|++++|...++++.+ ..+..+ ...++..+..+|.+.|++++|.+.+++. . ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788888899999999999999998873 111111 1257888889999999999999998876 1 111 1
Q ss_pred HhHHHHHHHHHhhcCCchHH-HHHHHHHHHc
Q 012108 373 ESILGALLSACVIHQDLEIG-DRVAKMVCAK 402 (471)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 402 (471)
..+|..+..++...|++++| ...++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788889999999999999 7778877654
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2.4e-07 Score=78.93 Aligned_cols=185 Identities=9% Similarity=-0.127 Sum_probs=82.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHH-------HHHHHhcCChHHHHHHHhcCCC--C-------C----------
Q 012108 216 NLGSLETGARIHVYATDNGLASNPHATTAL-------IDMYAKCGSIEQSLEVFYKSQV--K-------D---------- 269 (471)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~--~-------~---------- 269 (471)
..++.+.|.+.|.++.+.. +.....|..+ ...+.+.++..+++..+.+... | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777665 4455556555 3444444444444443333222 0 0
Q ss_pred -----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hh
Q 012108 270 -----VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK--LE 342 (471)
Q Consensus 270 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 342 (471)
...+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHH
Confidence 011223344445555555555555554443 23322333333344455555555555543332 00 110 12
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCC---CC--HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 343 HYGCMVDLLGRARLLDRAIELIEAMPFE---PT--ESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.+..+..++.+.|++++|+..|++.... |. .........++.+.|+.++|..+|+++...+|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3334444444555555555555444101 21 123333344444445555555555555444443
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=6.7e-07 Score=76.19 Aligned_cols=121 Identities=8% Similarity=-0.056 Sum_probs=51.7
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCc
Q 012108 245 LIDMYAKCGSIEQSLEVFYKSQV--KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD--DITFIGLLSACSHAGL 320 (471)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~ 320 (471)
+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...|+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 34444455555555555554433 111133333334445555555555554332210 010 1234444444555555
Q ss_pred HHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 321 VQEGCELFSRMEKDFGVTR--KLEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
+++|+..|++... ....| ..........++.+.|+.++|...|+++
T Consensus 187 ~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 187 FTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555543 11112 1223334444445555555555555544
No 137
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=1.7e-05 Score=69.95 Aligned_cols=172 Identities=10% Similarity=0.014 Sum_probs=105.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-ChH
Q 012108 180 LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG-SLETGARIHVYATDNGLASNPHATTALIDMYAKC-G-SIE 256 (471)
Q Consensus 180 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 256 (471)
.+.+..++|++++++++..+ +-+...|+.--..+...| .+++++.+++.+.... +.+..+|+.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 33444556777777766642 223334454444555555 4677777777777665 55566666665555555 5 667
Q ss_pred HHHHHHhcCCCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-----
Q 012108 257 QSLEVFYKSQVK---DVFCWNAMILGLALHGYGY--------AALKLLGEMNDSCVKADDITFIGLLSACSHAGL----- 320 (471)
Q Consensus 257 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----- 320 (471)
+++++++++... |..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 777777766553 4455555544555545555 7888888887764 3366677776666666665
Q ss_pred --HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 012108 321 --VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356 (471)
Q Consensus 321 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (471)
++++++.++++.. ..+-|...|+.+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 6778888887776 345567777776666666554
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1e-07 Score=71.78 Aligned_cols=94 Identities=6% Similarity=-0.160 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (471)
+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..++++++.+|. ++..+..++.+|...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 344444455555555555555544 11 223455555555555566666666666666666555 555566666666666
Q ss_pred CCHHHHHHHHHHhhhCC
Q 012108 422 GQWEEANRWRNMMNDTG 438 (471)
Q Consensus 422 g~~~~A~~~~~~m~~~~ 438 (471)
|++++|.+.+++..+.+
T Consensus 86 ~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 86 KEYASALETLDAARTKD 102 (126)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhC
Confidence 66666666665555444
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=9e-08 Score=71.46 Aligned_cols=97 Identities=10% Similarity=-0.193 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 012108 343 HYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYAS 420 (471)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (471)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|. ++..+..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3455667788888999998888887 3334 6778888889999999999999999999999999 89999999999999
Q ss_pred cCCHHHHHHHHHHhhhCCCc
Q 012108 421 CGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~ 440 (471)
.|++++|...+++..+.++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999876654
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=1.4e-07 Score=82.15 Aligned_cols=93 Identities=6% Similarity=-0.071 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHhcc--cc-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012108 139 VSWNSLILAYTNAGEMEKAGEMFKKML--VK-NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215 (471)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 215 (471)
..+..+...+.+.|++++|...|++.. .| +...|..+..++.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344455555556666666666665552 12 44555556666666666666666666655532 223444555555555
Q ss_pred ccCChHHHHHHHHHHHH
Q 012108 216 NLGSLETGARIHVYATD 232 (471)
Q Consensus 216 ~~~~~~~a~~~~~~~~~ 232 (471)
..|++++|...++.+.+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666655544
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=6.4e-08 Score=75.22 Aligned_cols=103 Identities=7% Similarity=-0.114 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSA 382 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 382 (471)
...+..+...+...|++++|...|+++.. ..+.++..|..+..+|...|++++|...|++. ...| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34566677778888888888888888887 34556778888888888888888888888887 3333 56778888888
Q ss_pred HhhcCCchHHHHHHHHHHHcCCCCCchh
Q 012108 383 CVIHQDLEIGDRVAKMVCAKSNYLSDGE 410 (471)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 410 (471)
+...|++++|...|+++++..|. ++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~-~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIAN-XPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTT-CGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcC-CCcc
Confidence 99999999999999999988887 5544
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=1.4e-07 Score=74.77 Aligned_cols=109 Identities=9% Similarity=-0.046 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 012108 304 DDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLS 381 (471)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 381 (471)
+...+..+...+...|++++|+..|+++.+ -.+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456788888899999999999999999998 34457888999999999999999999999987 3334 5778899999
Q ss_pred HHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHH
Q 012108 382 ACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415 (471)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (471)
++...|++++|...|+++++..|. +...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN-GGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS-SCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 999999999999999999999998 777554433
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=2.9e-07 Score=68.04 Aligned_cols=94 Identities=10% Similarity=-0.113 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC 421 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (471)
+..+...+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|. ++..+..++.+|...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHH
Confidence 333344444444444444444443 1 1123344444444455555555555555555555554 455555555555555
Q ss_pred CCHHHHHHHHHHhhhCC
Q 012108 422 GQWEEANRWRNMMNDTG 438 (471)
Q Consensus 422 g~~~~A~~~~~~m~~~~ 438 (471)
|++++|.+.+++..+.+
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 55555555555554443
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=3e-07 Score=69.70 Aligned_cols=103 Identities=5% Similarity=-0.139 Sum_probs=91.8
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHH
Q 012108 338 TRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415 (471)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (471)
+.+...+..+...+...|++++|.+.|++. ...| +...+..+...+...|++++|...++++.+..|. +...+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 345777888999999999999999999987 4444 6788899999999999999999999999999998 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 416 NLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
.+|.+.|++++|.+.+++..+..+..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999998876543
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.65 E-value=3e-07 Score=75.52 Aligned_cols=96 Identities=10% Similarity=-0.061 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 012108 342 EHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419 (471)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (471)
..+..+..+|.+.|++++|...+++. .. +.+...+..+..++...|++++|...|+++++..|. +...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 56667777777888888888877776 22 335678888888899999999999999999999998 8889999999998
Q ss_pred hcCCHHHHH-HHHHHhhhCC
Q 012108 420 SCGQWEEAN-RWRNMMNDTG 438 (471)
Q Consensus 420 ~~g~~~~A~-~~~~~m~~~~ 438 (471)
..|+.+++. ..+..|...+
T Consensus 168 ~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 888888776 5566665443
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=2.2e-07 Score=76.50 Aligned_cols=132 Identities=8% Similarity=-0.151 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC--C
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMND----SCVKA-DDITFIGLLSACSHAGLVQEGCELFSRMEKDF---GVTR--K 340 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~ 340 (471)
.++..+...+...|++++|...+++... .+..| ....+..+...+...|++++|...+++..+.. +..+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3344444444444555555444444432 11111 12344455555556666666666665554421 1011 1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCC------CCCC--HhHHHHHHHHHhhcCCchHHHHHHHHHHHc
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAMP------FEPT--ESILGALLSACVIHQDLEIGDRVAKMVCAK 402 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (471)
...+..+...+...|++++|...+++.- ..+. ..++..+...+...|++++|...++++.+.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2234444445555555555555544430 0111 123344555555566666666555555443
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=2.6e-07 Score=69.10 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
...+..+...+...|++++|.+.++++ . .+.+..++..+...+...|++++|...++++.+..|. ++..+..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 567888899999999999999999987 2 3346778889999999999999999999999999988 899999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCcc
Q 012108 419 ASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
...|++++|...++++.+..+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999998876543
No 148
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=5.7e-07 Score=69.77 Aligned_cols=102 Identities=9% Similarity=-0.037 Sum_probs=87.0
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHH
Q 012108 302 KAD-DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGA 378 (471)
Q Consensus 302 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 378 (471)
.|+ ...+..+...+.+.|++++|...|+++.+ -.+.++..|..+..+|...|++++|.+.|++. .+.| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 443 34677788889999999999999999998 34557888999999999999999999999988 3444 5678889
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
+..++...|++++|...|+++++..|+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999887
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=6.2e-07 Score=66.19 Aligned_cols=109 Identities=9% Similarity=-0.070 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFE-PTESILGALLSAC 383 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 383 (471)
..+..+...+...|++++|...++++.. ..+.+...+..+..++...|++++|...+++. ... .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4455566666667777777777777765 23345666666777777777777777777665 222 3466777777778
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (471)
...|++++|...++++.+.+|. ++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHh
Confidence 8888888888888888888777 66666665554
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=1.7e-06 Score=71.13 Aligned_cols=144 Identities=11% Similarity=0.002 Sum_probs=67.7
Q ss_pred hcCCHHHHHH---HHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccc---------cChHHHHHHHHHHHhcCCHH
Q 012108 119 RIGKIHSARY---IFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV---------KNVITWNTMVTGYLRSQLYI 186 (471)
Q Consensus 119 ~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~ 186 (471)
..|++++|.+ .+..-......++..+...+...|++++|.+.+++... ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 33222222334455555555556666666555555422 12344555666666666666
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCc--hhHHHHHHHHHHhcCCh
Q 012108 187 EVVDLFDEMKAG----NVKP--DYLTVTSVLSACANLGSLETGARIHVYATDNGL---ASN--PHATTALIDMYAKCGSI 255 (471)
Q Consensus 187 ~a~~~~~~m~~~----g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~ 255 (471)
+|...+++..+. +-.| ....+..+...+...|++++|...+++..+... .+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666655432 1011 122344455555666666666666665543210 111 12234444445555555
Q ss_pred HHHHHHH
Q 012108 256 EQSLEVF 262 (471)
Q Consensus 256 ~~a~~~~ 262 (471)
++|.+.+
T Consensus 164 ~~A~~~~ 170 (203)
T 3gw4_A 164 LEAQQHW 170 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=4.3e-07 Score=68.29 Aligned_cols=110 Identities=8% Similarity=-0.059 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSAC 383 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 383 (471)
..+......+...|++++|...|++..+ -.+.+...|..+..+|.+.|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4555666677777777777777777776 23445677777777777788888887777776 2233 466777888888
Q ss_pred hhcCCchHHHHHHHHHHHcC------CCCCchhHHHHHHHH
Q 012108 384 VIHQDLEIGDRVAKMVCAKS------NYLSDGELMMFANLY 418 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~ 418 (471)
...|++++|...++++++.. |. +......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSS-AREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHHH
Confidence 88888888888888888887 65 555555555543
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.62 E-value=2.5e-07 Score=70.67 Aligned_cols=97 Identities=8% Similarity=-0.122 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
...+..+...+...|++++|...|++. .. +.+...+..+..++...|++++|...++++++.+|. ++..+..++.+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 344444444444444444444444443 11 123444555555555555555555555555555555 555555555555
Q ss_pred HhcCCHHHHHHHHHHhhhCC
Q 012108 419 ASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~ 438 (471)
...|++++|...+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 55555555555555554433
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=1.5e-07 Score=70.93 Aligned_cols=91 Identities=5% Similarity=0.034 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCc-------hhHHHHH
Q 012108 345 GCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD-------GELMMFA 415 (471)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~ 415 (471)
..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++.+|. +. .+|..++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHHH
Confidence 33444444444444444444443 1122 3344444555555555555555555555544433 11 2344445
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 012108 416 NLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (471)
.+|...|++++|++.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555555544
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=9.1e-07 Score=70.01 Aligned_cols=128 Identities=9% Similarity=-0.116 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012108 271 FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDL 350 (471)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (471)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+ ..+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 345566667777778888888777776642 33566777777778888888888888888777 234456777777788
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHhHH--HHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 351 LGRARLLDRAIELIEAM-PFEP-TESIL--GALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 351 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
+...|++++|.+.+++. ...| +...+ ...+..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888776 2223 33344 3333346677888888888776654
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=5.7e-07 Score=69.64 Aligned_cols=107 Identities=6% Similarity=-0.204 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHH
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----LEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGA 378 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 378 (471)
...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 44455555555556666666666665554 1222 344444555555555555555555444 1122 3344444
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHH
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFA 415 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (471)
+..++...|++++|...++++.+..|. +...+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 555555555555555555555555544 444443333
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=4.4e-07 Score=69.91 Aligned_cols=104 Identities=9% Similarity=-0.084 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSAC 383 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 383 (471)
..+..+...+...|++++|...|+++.. ..+.+...|..+..+|.+.|++++|...|++. ...| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455566667777888888888877776 33446667777777777888888888877776 2223 456677778888
Q ss_pred hhcCCchHHHHHHHHHHHcCCCCCchhHH
Q 012108 384 VIHQDLEIGDRVAKMVCAKSNYLSDGELM 412 (471)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (471)
...|++++|...|+++++..|. ++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 124 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAA-QPAHEA 124 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHT-CGGGHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CcchHH
Confidence 8888888888888888888776 554443
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=4.5e-07 Score=72.84 Aligned_cols=125 Identities=7% Similarity=-0.001 Sum_probs=97.1
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHH-HhhcCCc--
Q 012108 315 CSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSA-CVIHQDL-- 389 (471)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~-~~~~g~~-- 389 (471)
+...|++++|...+++..+ ..+.+...+..+..+|...|++++|...|++. .. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456788888888888877 33456778888888899999999999988887 22 2356677777777 7788888
Q ss_pred hHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 390 EIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
++|...++++++.+|. ++..+..++.+|...|++++|...++++.+..+..+
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 9999999999998888 888888899999999999999999998888776543
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=5.3e-07 Score=65.86 Aligned_cols=101 Identities=14% Similarity=-0.111 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC-CCchhHHHHHHH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-P-FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY-LSDGELMMFANL 417 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 417 (471)
...+..+...+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|. .+...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 444555556666666666666666655 1 2234556666666777777777777777777766553 135566677777
Q ss_pred HHhc-CCHHHHHHHHHHhhhCCCcc
Q 012108 418 YASC-GQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 418 ~~~~-g~~~~A~~~~~~m~~~~~~~ 441 (471)
|.+. |++++|.+.+++..+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 7777 77777777777776665543
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=2.1e-06 Score=64.55 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHhccc---cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012108 139 VSWNSLILAYTNAGEMEKAGEMFKKMLV---KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACA 215 (471)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 215 (471)
..+..+...+...|++++|.+.|++... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3455555566666666666666666521 244556666666666666666666666665542 223445555566666
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 012108 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGS 254 (471)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (471)
..|++++|...++...+.. +.+...+..+..++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666554 3445555555555555544
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=1.3e-05 Score=70.60 Aligned_cols=216 Identities=12% Similarity=-0.002 Sum_probs=156.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCCC---CChhhHHHHHHHHHhc-C-ChHHH
Q 012108 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCG-SIEQSLEVFYKSQV---KDVFCWNAMILGLALH-G-YGYAA 289 (471)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~a 289 (471)
+.+..++|+++++.++..+ +-+..+++.-...+...| .+++++++++.+.. .+..+|+.-...+.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3455678999999999886 667778888888888888 59999999988665 3567777777777776 7 89999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--------HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC-----
Q 012108 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ--------EGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL----- 356 (471)
Q Consensus 290 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 356 (471)
+++++++.... +-+...++.-...+.+.|.++ ++++.++++.+ ..+.|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccch
Confidence 99999999864 336666666555555555555 89999999988 355678888888888888876
Q ss_pred --HHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCc--------------------hHHHHHHHHHHHcC-----CCCC
Q 012108 357 --LDRAIELIEAM-PF-EPTESILGALLSACVIHQDL--------------------EIGDRVAKMVCAKS-----NYLS 407 (471)
Q Consensus 357 --~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~ 407 (471)
++++++.++++ .. +-|...|+.+-..+.+.|.. .........+.... ..++
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68888888776 33 34677777766666666554 22333333332222 0136
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 408 DGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
+..+..|++.|...|+.++|.++++.+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7788899999999999999999999985
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=1.1e-06 Score=69.53 Aligned_cols=96 Identities=11% Similarity=-0.118 Sum_probs=64.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012108 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMV 348 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 348 (471)
+...+..+...+.+.|++++|+..|++..... +-+...+..+..++...|++++|+..|+++.+ -.+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 34556666677777777777777777776642 22556666677777777777777777777776 2334566677777
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 012108 349 DLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~ 367 (471)
.+|...|++++|.+.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 7777777777777777665
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=4.8e-07 Score=68.26 Aligned_cols=94 Identities=11% Similarity=-0.026 Sum_probs=50.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHH
Q 012108 310 GLLSACSHAGLVQEGCELFSRMEKDFGVTRKL---EHYGCMVDLLGRARLLDRAIELIEAM-PFEPT----ESILGALLS 381 (471)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 381 (471)
.+...+...|++++|...|+++.+. .+.+. ..+..+..++.+.|++++|...|++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445555666666666666666652 12222 34555555556666666666655554 11222 334455555
Q ss_pred HHhhcCCchHHHHHHHHHHHcCCC
Q 012108 382 ACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
++...|++++|...|+++.+..|.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC
Confidence 555666666666666666655554
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.5e-06 Score=65.86 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=60.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHH
Q 012108 340 KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPT----ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414 (471)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 414 (471)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|...++++.+..|. ++..+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 4455555666666666666666666655 34444 455555666666666666666666666666665 56666666
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 415 ANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
+.+|...|++++|...+++..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6666666666666666666655443
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=1.1e-06 Score=66.20 Aligned_cols=96 Identities=7% Similarity=-0.001 Sum_probs=55.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----C----HhHHHH
Q 012108 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP----T----ESILGA 378 (471)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~~ 378 (471)
+..+...+.+.|++++|++.|+++.+ -.+.+...|..+..+|.+.|++++|++.+++. .+.| + ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44455555555555555555555554 12334455555555555555555555555544 1111 1 235666
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
+..++...|++++|++.|++.++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 777788888888888888888877664
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.46 E-value=3.4e-05 Score=67.70 Aligned_cols=180 Identities=9% Similarity=0.031 Sum_probs=111.3
Q ss_pred hHHHHHHHH---HHHhcCCHH-HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCC----------hHHHHHHHHHHHHc
Q 012108 169 VITWNTMVT---GYLRSQLYI-EVVDLFDEMKAGNVKPDYL-TVTSVLSACANLGS----------LETGARIHVYATDN 233 (471)
Q Consensus 169 ~~~~~~l~~---~~~~~~~~~-~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~ 233 (471)
+..|..+.. ...+.|.++ +|+++++.++.. .|+.. .|+.--..+...+. ++++..+++.+...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 344444433 334556655 789999999875 45443 34443333333322 56777788888776
Q ss_pred CCCCchhHHHHHHHHHHhcCC--hHHHHHHHhcCCC---CChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHH
Q 012108 234 GLASNPHATTALIDMYAKCGS--IEQSLEVFYKSQV---KDVFCWNAMILGLALHGY-GYAALKLLGEMNDSCVKADDIT 307 (471)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~ 307 (471)
. +-+..+|+.-..++...++ +++++.+++++.. .|..+|+.-...+...|. ++++++.++++.... +-|...
T Consensus 104 ~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 104 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp C-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred C-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 5 6677777777777777773 7788888777654 456677777777777777 478888888887764 335555
Q ss_pred HHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc
Q 012108 308 FIGLLSACSHA--------------GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRA 354 (471)
Q Consensus 308 ~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (471)
|+.....+... +.++++++.+..+.. -.+-|...|+.+-..+.+.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 65554444333 346677777777766 3344566665554444443
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.46 E-value=5.3e-07 Score=84.81 Aligned_cols=118 Identities=9% Similarity=-0.051 Sum_probs=87.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCc
Q 012108 312 LSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDL 389 (471)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 389 (471)
...+.+.|++++|.+.++++.+ ..+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3445667888888888888877 23445777778888888888888888888776 3334 567788888888888999
Q ss_pred hHHHHHHHHHHHcCCCCCchhHHHHHHH--HHhcCCHHHHHHHHH
Q 012108 390 EIGDRVAKMVCAKSNYLSDGELMMFANL--YASCGQWEEANRWRN 432 (471)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 432 (471)
++|++.++++++..|. +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988888888 77777777777 778888888888887
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=8e-05 Score=65.35 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=94.6
Q ss_pred HhCCCHH-HHHHHHHhccccC---hHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 149 TNAGEME-KAGEMFKKMLVKN---VITWNTMVTGYLRSQL----------YIEVVDLFDEMKAGNVKPDYLTVTSVLSAC 214 (471)
Q Consensus 149 ~~~~~~~-~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 214 (471)
.+.|.+. +|+++++.+..-| ..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455544 6777777774433 3345443333333222 567777777776643 33555666655555
Q ss_pred HccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcCCC---CChhhHHHHHHHHHhc-----
Q 012108 215 ANLG--SLETGARIHVYATDNGLASNPHATTALIDMYAKCGS-IEQSLEVFYKSQV---KDVFCWNAMILGLALH----- 283 (471)
Q Consensus 215 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~----- 283 (471)
...+ .++++..++..+.+.. +.|..+|+.-..++...|. ++++++.++++.. .|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 5555 3677777888777765 5666777766666667776 4777777766544 3566676666655544
Q ss_pred ---------CChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012108 284 ---------GYGYAALKLLGEMNDSCVKADDITFIGL 311 (471)
Q Consensus 284 ---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l 311 (471)
+.++++++.+....... +-|...++-+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34566777777766542 2244444433
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=7.9e-07 Score=67.04 Aligned_cols=111 Identities=5% Similarity=-0.069 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HhH
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF----EPT----ESI 375 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~ 375 (471)
...+..+...+...|++++|...++++.+ ..+.+...+..+..++...|++++|...+++. .. .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34566677777788888888888888876 23445667777777777788888888777766 11 122 556
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 012108 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA 419 (471)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (471)
+..+..++...|++++|...++++.+..|. +.....+..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~ 123 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 677777777778888888888777776653 555555554433
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.43 E-value=1.7e-07 Score=69.57 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
.+..+..++...|++++|+..++++++..|. ++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444444455555555555555555544 4444455555555555555555555444443
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=2.3e-06 Score=62.31 Aligned_cols=98 Identities=9% Similarity=-0.060 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHhHHHHHHH
Q 012108 306 ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP---TESILGALLS 381 (471)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 381 (471)
..+..+...+...|++++|...++++.+ ..+.+...+..+..++...|++++|.+.+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455555666666666777666666665 22334556666666666777777777766665 2223 4566777777
Q ss_pred HHhhc-CCchHHHHHHHHHHHcCCC
Q 012108 382 ACVIH-QDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 382 ~~~~~-g~~~~a~~~~~~~~~~~~~ 405 (471)
++... |++++|.+.++++....|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 77777 8888888888887777765
No 171
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=3e-06 Score=75.87 Aligned_cols=130 Identities=6% Similarity=-0.141 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 012108 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD--------------DITFIGLLSACSHAGLVQEGCELFSRMEKDF 335 (471)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 335 (471)
...+..+...+.+.|++++|+..|++......... ...+..+..++.+.|++++|+..++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-- 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 34555666666666777777777766665421111 36677777788888888888888888877
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHH-HHHHHHHHH
Q 012108 336 GVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIG-DRVAKMVCA 401 (471)
Q Consensus 336 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 401 (471)
-.+.+...+..+..+|...|++++|...|+++ .+.| +...+..+..++...|+.++| ...++.|..
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23446777777888888888888888888776 3334 456777777777778887777 345555543
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=9.6e-07 Score=69.75 Aligned_cols=113 Identities=7% Similarity=-0.022 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-----CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFG-----VTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGAL 379 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 379 (471)
...+......+.+.|++++|...|.+...... ..|+...+ ..+ .+.+...|..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~nl 69 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-DRKNIPLYANM 69 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-HHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-HHHHHHHHHHH
Confidence 34566677777888888888888887776200 00110000 000 01122344445
Q ss_pred HHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
..++.+.|++++|+..++++++.+|. ++..|..++.+|...|++++|...|++..+..+
T Consensus 70 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 70 SQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 55555555555555555555555555 555555555555555555555555555554443
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.41 E-value=1.9e-06 Score=80.75 Aligned_cols=129 Identities=10% Similarity=0.014 Sum_probs=88.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-------------ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CC
Q 012108 307 TFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR-------------KLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EP 371 (471)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p 371 (471)
.+..+...+.+.|++++|...|+++.+.....+ ....|..+..+|.+.|++++|+..+++. .. +.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344444445555555555555555544111110 1467778888888888888888888877 22 33
Q ss_pred CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH-HHHHhhh
Q 012108 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANR-WRNMMND 436 (471)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 436 (471)
+...|..+..+|...|++++|+..|+++++..|. +...+..+..++.+.|+++++.+ .+++|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888899999999999999999999999998 88999999999999999888764 4555543
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=4.9e-07 Score=74.21 Aligned_cols=151 Identities=9% Similarity=-0.079 Sum_probs=91.1
Q ss_pred HHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C---C-----------HHHHHH
Q 012108 249 YAKCGSIEQSLEVFYKSQVK---DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVK-A---D-----------DITFIG 310 (471)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p---~-----------~~~~~~ 310 (471)
....|+++++.+.++..... ....+..+...+...|++++|+..|++....... | . ...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 33445555555555432221 3345666677777888888888888887764211 1 0 256777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCC
Q 012108 311 LLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQD 388 (471)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 388 (471)
+..++...|++++|...++++.+ ..+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...++
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 77888888888888888888887 24456777888888888888888888888876 3334 45666667767666666
Q ss_pred chHHH-HHHHHHHH
Q 012108 389 LEIGD-RVAKMVCA 401 (471)
Q Consensus 389 ~~~a~-~~~~~~~~ 401 (471)
.+++. ..+..+..
T Consensus 172 ~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 172 ARKKDKLTFGGMFD 185 (198)
T ss_dssp HHC-----------
T ss_pred HHHHHHHHHHHHhc
Confidence 66655 34444443
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.41 E-value=7.3e-07 Score=68.52 Aligned_cols=65 Identities=11% Similarity=-0.152 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHc-------CCCCCchhH----HHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 374 SILGALLSACVIHQDLEIGDRVAKMVCAK-------SNYLSDGEL----MMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
..|..+..++.+.|++++|+..++++++. +|+ +...| ...+.++...|++++|+..|++..+..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 37788888888888888888888888888 888 88888 8888888888888888888888876543
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=2.7e-06 Score=64.77 Aligned_cols=101 Identities=5% Similarity=-0.149 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHH
Q 012108 303 ADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALL 380 (471)
Q Consensus 303 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~ 380 (471)
.+...+..+...+...|++++|...|+++.+ ..+.+...+..+..++...|++++|...+++. .. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3456666777777777777777777777776 23445667777777777777777777777766 22 23466777777
Q ss_pred HHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 381 SACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.++...|++++|...++++.+..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7888888888888888888777654
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.8e-05 Score=73.58 Aligned_cols=192 Identities=8% Similarity=-0.069 Sum_probs=109.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCc
Q 012108 176 VTGYLRSQLYIEVVDLFDEMKAGNVKPDY----------------LTVTSVLSACANLGSLETGARIHVYATDNGL-ASN 238 (471)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 238 (471)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677888999999999888775322111 1355677777778888888877777654211 111
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC
Q 012108 239 P----HATTALIDMYAKCGSIEQSLEVFYKSQV-----K----DVFCWNAMILGLALHGYGYAALKLLGEMNDS----CV 301 (471)
Q Consensus 239 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 301 (471)
. .+.+.+...+...|+.+.|..+++.... . -..++..+...+...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333444455667777766654322 0 1235566666777777777777776665432 11
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 302 KAD-DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK-----LEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 302 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
.+. ...+..++..|...|++++|..++++........++ ...+..+...+...|++++|...|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 234555666677777777777777665542111111 234445555566667777766666544
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=1.6e-06 Score=65.27 Aligned_cols=95 Identities=9% Similarity=-0.081 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CCC----hhHHHH
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGV-TRK----LEHYGC 346 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~ 346 (471)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+.... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44555555556666666666666655542 224445555555555666666666666655542110 111 445555
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 012108 347 MVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~ 367 (471)
+..++...|++++|.+.|++.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 555566666666666666554
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=9.9e-06 Score=60.84 Aligned_cols=93 Identities=12% Similarity=0.034 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H---hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCC---chhHHHHHHH
Q 012108 346 CMVDLLGRARLLDRAIELIEAM-PFEPT-E---SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS---DGELMMFANL 417 (471)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 417 (471)
.+...+...|++++|.+.|+++ ...|+ . ..+..+..++...|++++|...++++.+..|. + +..+..++.+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3445556666666666666655 11222 2 35555666666666666666666666666665 4 4556666666
Q ss_pred HHhcCCHHHHHHHHHHhhhCCC
Q 012108 418 YASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
|.+.|++++|...++++.+..+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCC
Confidence 6666666666666666665543
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.35 E-value=2.2e-06 Score=67.24 Aligned_cols=129 Identities=12% Similarity=-0.035 Sum_probs=73.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHhH
Q 012108 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----LEHYGCMVDLLGRARLLDRAIELIEAM-------PFEP-TESI 375 (471)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~ 375 (471)
+..+...+...|++++|...+++..+.....++ ..++..+...+...|++++|.+.+++. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444455555555555444431100011 124444555555555555555555443 1111 1345
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHcCCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 376 LGALLSACVIHQDLEIGDRVAKMVCAKSNY-----LSDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
+..+...+...|++++|...++++.+..+. .....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777777888888888888877765321 0234667788888899999999988888765
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.32 E-value=1e-06 Score=78.93 Aligned_cols=148 Identities=9% Similarity=-0.126 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 012108 272 CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351 (471)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (471)
.+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 3445555555666666666666665543 333221 12222332222111 0 12566666677
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHH-hcCCHHHHH
Q 012108 352 GRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYA-SCGQWEEAN 428 (471)
Q Consensus 352 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 428 (471)
.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++++..|. +...+..+..+.. ..+..+.+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665 2223 4566666777777777777777777777777766 6666666666533 345566666
Q ss_pred HHHHHhhhCCCc
Q 012108 429 RWRNMMNDTGIV 440 (471)
Q Consensus 429 ~~~~~m~~~~~~ 440 (471)
.+|++|....+.
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 677776655544
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=3.1e-06 Score=62.92 Aligned_cols=96 Identities=8% Similarity=-0.039 Sum_probs=58.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhh
Q 012108 308 FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVI 385 (471)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 385 (471)
+..+...+.+.|++++|...|+++.+ ..+.+...|..+..++...|++++|+..|++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444555666666666666666665 23345666666666666667777776666665 2333 45566667777777
Q ss_pred cCCchHHHHHHHHHHHcCCC
Q 012108 386 HQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~ 405 (471)
.|++++|+..++++++.+|.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 77777777777777766665
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.5e-05 Score=74.10 Aligned_cols=185 Identities=8% Similarity=-0.121 Sum_probs=132.8
Q ss_pred HHHHHHhCCCHHHHHHHHHhccccC--------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC
Q 012108 144 LILAYTNAGEMEKAGEMFKKMLVKN--------------------VITWNTMVTGYLRSQLYIEVVDLFDEMKAG-NVKP 202 (471)
Q Consensus 144 l~~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p 202 (471)
-...+.+.|++++|.+.|..+.+.+ ..++..+...|...|++++|.+.+..+... +..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3456788999999999999983321 124778899999999999999999987653 1122
Q ss_pred CHH----HHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC------
Q 012108 203 DYL----TVTSVLSACANLGSLETGARIHVYATDN----GLAS-NPHATTALIDMYAKCGSIEQSLEVFYKSQV------ 267 (471)
Q Consensus 203 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------ 267 (471)
+.. ..+.+...+...|+.+.+..+++..... +..+ -..++..+...|...|++++|..+++++..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 222 2223333445678999999999887642 2222 356788899999999999999999876432
Q ss_pred --C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCcHHHHHHHH
Q 012108 268 --K-DVFCWNAMILGLALHGYGYAALKLLGEMNDS----CVKAD--DITFIGLLSACSHAGLVQEGCELF 328 (471)
Q Consensus 268 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~ 328 (471)
+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1 2457888999999999999999999987642 21212 234556667778889998886654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.25 E-value=6.6e-06 Score=74.49 Aligned_cols=89 Identities=6% Similarity=-0.101 Sum_probs=77.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 012108 340 KLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANL 417 (471)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (471)
+...|..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|++++|+..|+++++..|. +...+..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4667888888999999999999999887 4445 5678888999999999999999999999999998 89999999999
Q ss_pred HHhcCCHHHHHH
Q 012108 418 YASCGQWEEANR 429 (471)
Q Consensus 418 ~~~~g~~~~A~~ 429 (471)
+.+.++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887765
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=4.1e-06 Score=66.07 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012108 270 VFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349 (471)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (471)
...+......+.+.|++++|+..|.+.... .+... .-....+.+ +..+. +.+...|..+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~~~~-------~~~~~~~~~-----~~~~~-----~~~~~~~~nla~ 71 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--LDTLI-------LREKPGEPE-----WVELD-----RKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH-------HTSCTTSHH-----HHHHH-----HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhc-------ccCCCCHHH-----HHHHH-----HHHHHHHHHHHH
Confidence 456778888999999999999999998763 00000 000000000 01111 123445666666
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCc-hhHHHHHHH
Q 012108 350 LLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSD-GELMMFANL 417 (471)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 417 (471)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...|+++++..|. ++ .....+..+
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~ 141 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMKIV 141 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 666677777777666665 2223 4567777777788888888888888888888777 55 333344333
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=6.8e-06 Score=64.40 Aligned_cols=131 Identities=11% Similarity=-0.057 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhH
Q 012108 273 WNAMILGLALHGYGYAALKLLGEMNDSCV-KAD----DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----LEH 343 (471)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 343 (471)
+..+...+...|++++|+..+++...... .++ ..++..+...+...|++++|...+++..+.....++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444445555555555555554433200 001 124555566666667777776666665542111111 344
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 344 YGCMVDLLGRARLLDRAIELIEAM-------PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++..+..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 556666666777777777666654 1111 13456677778888888888888888877654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=1.5e-06 Score=64.27 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=51.2
Q ss_pred cCcHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHH
Q 012108 318 AGLVQEGCELFSRMEKDFG--VTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGD 393 (471)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 393 (471)
.|++++|+..|+++.+ .+ .+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555556666665554 11 1223455555666666666666666666655 2222 4556666677777777777777
Q ss_pred HHHHHHHHcCCCCCch
Q 012108 394 RVAKMVCAKSNYLSDG 409 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~ 409 (471)
..++++++..|. ++.
T Consensus 82 ~~~~~al~~~p~-~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSD-DET 96 (117)
T ss_dssp HHHHHHHHHHCC-CHH
T ss_pred HHHHHHHHhCCC-cHH
Confidence 777777777666 443
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=7.4e-06 Score=73.32 Aligned_cols=122 Identities=7% Similarity=-0.119 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACV 384 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 384 (471)
...+..+...+.+.|++++|...|+++... .|+.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 455667777888889999999999888762 23322 1233445555544332 237788899999
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCc
Q 012108 385 IHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444 (471)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 444 (471)
+.|++++|+..++++++.+|. +...|..++.+|...|++++|...|++..+..+.....
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999 99999999999999999999999999998877654433
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=8.9e-06 Score=76.47 Aligned_cols=117 Identities=11% Similarity=0.019 Sum_probs=65.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 012108 246 IDMYAKCGSIEQSLEVFYKSQV---KDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQ 322 (471)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 322 (471)
...+.+.|++++|++.|++... .+..+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445566666777666665433 245566666666666666666666666666642 224455666666666666666
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHH--HhhcCCHHHHHHHHH
Q 012108 323 EGCELFSRMEKDFGVTRKLEHYGCMVDL--LGRARLLDRAIELIE 365 (471)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 365 (471)
+|.+.|+++.+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666652 22233344444444 555666666666665
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.11 E-value=7.8e-06 Score=58.36 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=54.4
Q ss_pred CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
+...+..+..++...|++++|+..|+++++.+|. ++..|..++.+|...|++++|.+.+++..+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5667777888888888888888888888888888 788888888888888888888888888766543
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.4e-06 Score=63.54 Aligned_cols=94 Identities=6% Similarity=-0.070 Sum_probs=63.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCC------chhH
Q 012108 340 KLEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLS------DGEL 411 (471)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~ 411 (471)
+...+..+...+.+.|++++|.+.|++. .. +.+...+..+..++...|++++|+..++++++..|. + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 3445566666677777777777777665 22 235667777777888888888888888888887777 5 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 012108 412 MMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
..++.++...|+++.|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 66777777777666665544443
No 192
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.10 E-value=1.8e-07 Score=83.62 Aligned_cols=236 Identities=11% Similarity=0.072 Sum_probs=177.9
Q ss_pred chhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcC
Q 012108 44 HVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNIMISGYARIG 121 (471)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g 121 (471)
.+.+|+.+..+....++..+|+..|- ...|+..|..+|.+..+.|.+++-++.+...++. ++..=+.++-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 45678889999998898888887763 3467778999999999999999999998887765 6666778999999999
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhcc------------------------ccChHHHHHHHH
Q 012108 122 KIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKML------------------------VKNVITWNTMVT 177 (471)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~l~~ 177 (471)
+..+-++.+ ..|+..-...+.+-|...|.++.|.-+|..+. ..++.+|..+..
T Consensus 131 rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ 207 (624)
T 3lvg_A 131 RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 207 (624)
T ss_dssp SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTH
T ss_pred cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 877654433 33677677788888889999998888887761 237789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 012108 178 GYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQ 257 (471)
Q Consensus 178 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (471)
+|...+++..|.-.--.+.- .||. ...++..|-..|.+++.+.+++.-.... .....+|+.|.-.|++- ++++
T Consensus 208 ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 208 ACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHH
Confidence 99999998887765544442 2221 2235666788999999999988876432 46788899998888875 6666
Q ss_pred HHHHHhcCCC----C-------ChhhHHHHHHHHHhcCChHHHHH
Q 012108 258 SLEVFYKSQV----K-------DVFCWNAMILGLALHGYGYAALK 291 (471)
Q Consensus 258 a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~ 291 (471)
..+.++-... | ....|.-++-.|.+-.+++.|..
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 6666654332 2 45678888888998888887754
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=6.2e-05 Score=68.09 Aligned_cols=119 Identities=10% Similarity=0.017 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhccc-------------------cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012108 140 SWNSLILAYTNAGEMEKAGEMFKKMLV-------------------KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV 200 (471)
Q Consensus 140 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 200 (471)
.+..+...+.+.|++++|.+.|++.+. .+...|..+..++.+.|++++|+..+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 355666677777777777777777643 134567777778888888888888888877653
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 012108 201 KPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLE 260 (471)
Q Consensus 201 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 260 (471)
+.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345666777777778888888888888877764 4456666666666666666665543
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=1.6e-05 Score=74.29 Aligned_cols=124 Identities=10% Similarity=-0.001 Sum_probs=93.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhc--CCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhHHH
Q 012108 314 ACSHAGLVQEGCELFSRMEKDF--GVTR----KLEHYGCMVDLLGRARLLDRAIELIEAM---------PFEPT-ESILG 377 (471)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 377 (471)
.+..+|++++|+.++++..+.. -+.| ...+++.|...|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557788888888888776522 1222 2567888888888999999988888765 24454 35788
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHc-----CCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 012108 378 ALLSACVIHQDLEIGDRVAKMVCAK-----SNYLSDGE---LMMFANLYASCGQWEEANRWRNMMNDTG 438 (471)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 438 (471)
.|...|...|++++|+.+++++++. |++ .+.+ ...+..++...|.+++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988763 666 4443 3467778888999999999999997743
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00019 Score=68.75 Aligned_cols=167 Identities=11% Similarity=-0.063 Sum_probs=122.3
Q ss_pred HHHHHHHhcCCC---CChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--c
Q 012108 256 EQSLEVFYKSQV---KDVFCWNAMILGLALHGY----------GYAALKLLGEMNDSCVKADDITFIGLLSACSHAG--L 320 (471)
Q Consensus 256 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~ 320 (471)
++|++.++++.. .+..+|+.-...+...|+ ++++++.++++.... +-+..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 445555554433 233455554445555454 788888888888763 335667777777777778 6
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhc-----------
Q 012108 321 VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR-LLDRAIELIEAM-PFEP-TESILGALLSACVIH----------- 386 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------- 386 (471)
++++++.++++.+ -.+.+..+|+.-...+.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 125 ~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 7899999999988 34567778887777778888 888888888887 4444 567777777666553
Q ss_pred ---CCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 012108 387 ---QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEE 426 (471)
Q Consensus 387 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 426 (471)
+.++++.+.+++++..+|. +...|..+...+.+.|+.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999999999999 99999999999999888555
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=7e-05 Score=70.05 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhccc--c-C---------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012108 140 SWNSLILAYTNAGEMEKAGEMFKKMLV--K-N---------------VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVK 201 (471)
Q Consensus 140 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 201 (471)
.+..+...+.+.|++++|...|++.+. | + ...|..+..++.+.|++++|+..+++.++.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 444555555566666666666655521 1 1 2445555555555555555555555555432 2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012108 202 PDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSL 259 (471)
Q Consensus 202 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 259 (471)
.+...|..+..++...|++++|...|+.+++.. +.+...+..+..++.+.++.+++.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 234444455555555555555555555555443 333444444555555444444443
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=1.9e-05 Score=60.71 Aligned_cols=107 Identities=12% Similarity=-0.071 Sum_probs=70.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----C-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-------C
Q 012108 309 IGLLSACSHAGLVQEGCELFSRMEKDFGVTR-----K-----LEHYGCMVDLLGRARLLDRAIELIEAM-PF-------E 370 (471)
Q Consensus 309 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~ 370 (471)
......+.+.|++++|+..|+++.+-....| + ...|..+..++.+.|++++|+..+++. .+ .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 3344445555666666666665554111100 1 226666777777777777777666655 33 6
Q ss_pred CC-HhHH----HHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHH
Q 012108 371 PT-ESIL----GALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFAN 416 (471)
Q Consensus 371 p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 416 (471)
|+ ...| .....++...|++++|+..|+++++..|. |...+..+..
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~-d~~~~~~~~~ 144 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE-RKGETPGKER 144 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-CCSCCTTHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 65 4577 88899999999999999999999999887 6666554443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.99 E-value=3.9e-05 Score=53.25 Aligned_cols=81 Identities=12% Similarity=-0.005 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 012108 341 LEHYGCMVDLLGRARLLDRAIELIEAM-PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLY 418 (471)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (471)
...+..+...+...|++++|...+++. .. +.+...+..+..++...|++++|...++++.+..|. ++..+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 344455555555566666666665554 11 224455666666677777777777777777777776 666666666666
Q ss_pred HhcC
Q 012108 419 ASCG 422 (471)
Q Consensus 419 ~~~g 422 (471)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.98 E-value=2.1e-05 Score=57.67 Aligned_cols=79 Identities=13% Similarity=-0.048 Sum_probs=38.5
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 324 GCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFE-PTESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
+...|+++.+ ..+.+...+..+...|...|++++|...|++. ... .+...|..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555444 22334445555555555555555555555544 112 2344455555555555555555555555554
Q ss_pred cCC
Q 012108 402 KSN 404 (471)
Q Consensus 402 ~~~ 404 (471)
..|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 443
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.96 E-value=8.4e-06 Score=62.47 Aligned_cols=51 Identities=12% Similarity=0.058 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC-----------CHHHHHHHHHHhhhCCCc
Q 012108 389 LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCG-----------QWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~~ 440 (471)
+++|+..|+++++.+|+ +...|..++.+|...| ++++|++.|++..+.++.
T Consensus 62 ~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 45888888888888888 7888888888887764 788888888888777664
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.96 E-value=0.00012 Score=55.69 Aligned_cols=111 Identities=5% Similarity=-0.043 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhh----cCCchHHHHH
Q 012108 320 LVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVI----HQDLEIGDRV 395 (471)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 395 (471)
++++|.+.|++..+ .+ .|. .. |...|...+..++|.+.|++.-...++..+..|...|.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45556666666555 23 122 12 555555555555666666655223455555556666655 5677777777
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCC
Q 012108 396 AKMVCAKSNYLSDGELMMFANLYAS----CGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 439 (471)
|+++.+.+ ++..+..|+..|.. .+++++|.+++++..+.|.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777664 56677777777777 6777777777777766654
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.95 E-value=8.1e-05 Score=51.87 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=61.3
Q ss_pred CCCHhHHHHHHHHHhhcCC---chHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 370 EPTESILGALLSACVIHQD---LEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 370 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
++++..+..+..++...++ .++|..+++++++.+|. ++.....++..+.+.|++++|+..|+++.+.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567777888887765444 79999999999999999 9999999999999999999999999999988776
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=5.3e-05 Score=54.90 Aligned_cols=70 Identities=4% Similarity=-0.197 Sum_probs=64.2
Q ss_pred CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 371 PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 371 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
++...+..+...+...|++++|+..++++++..|. ++..+..++.+|.+.|++++|++.+++..+..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35667888899999999999999999999999999 89999999999999999999999999999877654
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=0.00012 Score=68.44 Aligned_cols=130 Identities=14% Similarity=0.022 Sum_probs=68.5
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C--CCCchhHHHH
Q 012108 179 YLRSQLYIEVVDLFDEMKAG---NVKPD----YLTVTSVLSACANLGSLETGARIHVYATDN-----G--LASNPHATTA 244 (471)
Q Consensus 179 ~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 244 (471)
+..+|++++|+.++++.++. -+.|+ ..+++.+...|...|++++|..++++.++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566677766666665432 11111 234555666666666666666666555431 1 0112234445
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHH
Q 012108 245 LIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADD-ITFIGLLSACSHAGLVQE 323 (471)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 323 (471)
|...|...|++++|+.+++ +|+++++...... .|+. .+...+..++...+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~------------------------~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMIC------------------------KAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555442 3333333332221 2322 345556667777888888
Q ss_pred HHHHHHHhHH
Q 012108 324 GCELFSRMEK 333 (471)
Q Consensus 324 a~~~~~~~~~ 333 (471)
|+.+|.++.+
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=0.00027 Score=67.74 Aligned_cols=157 Identities=8% Similarity=-0.078 Sum_probs=125.7
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 012108 283 HGYGYAALKLLGEMNDSCVKA-DDITFIGLLSACSHAGL----------VQEGCELFSRMEKDFGVTRKLEHYGCMVDLL 351 (471)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (471)
....++|++.++++... .| +...|+.--.++...|+ ++++++.++++.+ ..+.+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 33456889999999986 44 44556655555555555 8999999999998 4566788888888888
Q ss_pred hhcC--CHHHHHHHHHhC-C-CCCCHhHHHHHHHHHhhcC-CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-----
Q 012108 352 GRAR--LLDRAIELIEAM-P-FEPTESILGALLSACVIHQ-DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC----- 421 (471)
Q Consensus 352 ~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 421 (471)
.+.| +++++++.++++ . .+-+...|+.-..++...| .++++.+.++++++.+|. +...|.....++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccc
Confidence 8999 779999999998 3 3447788888888888888 899999999999999999 999999998888774
Q ss_pred ---------CCHHHHHHHHHHhhhCCCcccCc
Q 012108 422 ---------GQWEEANRWRNMMNDTGIVKTAG 444 (471)
Q Consensus 422 ---------g~~~~A~~~~~~m~~~~~~~~~~ 444 (471)
+.++++.+.+++....++.....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~sa 228 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSA 228 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccH
Confidence 56799999999998877654443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=8.2e-05 Score=51.56 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=62.0
Q ss_pred CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 372 TESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
+...+..+...+...|++++|+..++++++..|. ++..+..++.+|.+.|++++|...+++..+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3567788888999999999999999999999998 8999999999999999999999999999887654
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.00049 Score=52.23 Aligned_cols=112 Identities=8% Similarity=-0.096 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh----cCCHHH
Q 012108 284 GYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGR----ARLLDR 359 (471)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 359 (471)
+++++|+..|++..+.| .|+.. +...|...+..++|.+.|++..+ . -++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999988887 33433 66777777888889999999988 2 466778888888887 789999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHhh----cCCchHHHHHHHHHHHcCC
Q 012108 360 AIELIEAMPFEPTESILGALLSACVI----HQDLEIGDRVAKMVCAKSN 404 (471)
Q Consensus 360 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 404 (471)
|.+.|++.-...++..+..|...|.. .+++++|...|+++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988434577788888888887 8899999999999998874
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=0.00017 Score=52.70 Aligned_cols=63 Identities=6% Similarity=-0.116 Sum_probs=32.1
Q ss_pred HhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 373 ESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
...+..+...+...|++++|+..++++++.+|. +...|..++.+|...|++++|...|++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555555555554 444555555555555555555555554443
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.66 E-value=6.7e-05 Score=53.13 Aligned_cols=85 Identities=11% Similarity=-0.051 Sum_probs=58.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHh-HHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 347 MVDLLGRARLLDRAIELIEAM-PFEP-TES-ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
....+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|...|+++++.+|. +...+.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------HH
Confidence 344566777777777777766 2233 455 7777788888888888888888888888887 6655522 55
Q ss_pred HHHHHHHHHHhhhCCCc
Q 012108 424 WEEANRWRNMMNDTGIV 440 (471)
Q Consensus 424 ~~~A~~~~~~m~~~~~~ 440 (471)
+.++...+++....++.
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 66666666666554443
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.52 E-value=0.00029 Score=49.70 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=58.3
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHcCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcccCc
Q 012108 379 LLSACVIHQDLEIGDRVAKMVCAKSNYLSDG-ELMMFANLYASCGQWEEANRWRNMMNDTGIVKTAG 444 (471)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 444 (471)
....+...|++++|...++++++..|. ++. .+..++.+|...|++++|.+.|++..+.++.....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 456678899999999999999999999 888 99999999999999999999999999887765543
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.49 E-value=0.00015 Score=55.54 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC----------HHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhc
Q 012108 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL----------LDRAIELIEAM-PFEP-TESILGALLSACVIH 386 (471)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 386 (471)
+.+++|.+.++...+ -.+.+...|..+..++...++ +++|+..|++. .+.| +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344445555555444 123344444444444444433 23555555554 3334 345566666666554
Q ss_pred -----------CCchHHHHHHHHHHHcCCC
Q 012108 387 -----------QDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 387 -----------g~~~~a~~~~~~~~~~~~~ 405 (471)
|++++|+..|+++++.+|.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 5899999999999999987
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.45 E-value=0.012 Score=59.50 Aligned_cols=155 Identities=12% Similarity=0.178 Sum_probs=102.1
Q ss_pred HHHHHcCCCHHHHHH-HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 012108 83 LDAFASCGQMDHAMK-LIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMF 161 (471)
Q Consensus 83 i~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 161 (471)
.......+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. . ..-.......|++++|.++.
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHH
Confidence 344456788888887 664443 133346777778888888888876632 1 11234456788999998887
Q ss_pred HhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH
Q 012108 162 KKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHA 241 (471)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (471)
+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+.+...| -
T Consensus 676 ~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~ 738 (814)
T 3mkq_A 676 TDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------K 738 (814)
T ss_dssp TTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------C
T ss_pred Hhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------c
Confidence 765 3567888999999999999999999887753 3344445555677776666665555544 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhc
Q 012108 242 TTALIDMYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~ 264 (471)
++.-..+|.+.|++++|++++.+
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHH
Confidence 23344456667777777766543
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.45 E-value=0.0015 Score=57.66 Aligned_cols=71 Identities=8% Similarity=-0.064 Sum_probs=56.8
Q ss_pred CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 370 EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 370 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
+.++.++..+...+...|++++|...+++++..+| +...|..++.++.-.|++++|.+.+++....++.++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM--SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 45677777777777777889999999988888874 577777888888888999999888888888777654
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.35 E-value=0.0007 Score=47.93 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=34.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 269 DVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555555555555432 12334555555555666666666666655554
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.32 E-value=0.0004 Score=63.81 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=54.4
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHhhcCCchHHHHHHHHHHHc-----CCCCCc---hhHHHHH
Q 012108 354 ARLLDRAIELIEAM---------PFEPT-ESILGALLSACVIHQDLEIGDRVAKMVCAK-----SNYLSD---GELMMFA 415 (471)
Q Consensus 354 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~---~~~~~l~ 415 (471)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++. |+. .+ .+++.|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHH
Confidence 45666666665543 12333 346777778888888888888888777653 433 33 3566777
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 012108 416 NLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (471)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 788888888888888877754
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.13 E-value=0.001 Score=61.22 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHc-----CCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAK-----SNYLSD---GELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
+++.++.+|...|++++|+.+++++++. |+. .+ .+++.|+.+|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554432 222 22 234445555555555555555555543
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0014 Score=60.19 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=65.0
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-hHHHHHH
Q 012108 317 HAGLVQEGCELFSRMEKDF--GVTRK----LEHYGCMVDLLGRARLLDRAIELIEAM---------PFEPTE-SILGALL 380 (471)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 380 (471)
..|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888888776521 12222 467788888888899999888888775 244543 5788999
Q ss_pred HHHhhcCCchHHHHHHHHHHHc
Q 012108 381 SACVIHQDLEIGDRVAKMVCAK 402 (471)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~ 402 (471)
..|...|++++|+.+++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.09 E-value=0.03 Score=56.48 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=19.9
Q ss_pred HcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 012108 87 ASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFD 131 (471)
Q Consensus 87 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 131 (471)
...|++++|+++.+.+. +...|..+...+.+.|+++.|++.|.
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~ 705 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFT 705 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555444432 33444444444444444444444443
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.019 Score=50.70 Aligned_cols=135 Identities=10% Similarity=-0.139 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHH--hcC---ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhc---cC-----cHHHHHHHHHHhHHh
Q 012108 269 DVFCWNAMILGLA--LHG---YGYAALKLLGEMNDSCVKADD-ITFIGLLSACSH---AG-----LVQEGCELFSRMEKD 334 (471)
Q Consensus 269 ~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~~ 334 (471)
+..+|...+++.. ..+ ...+|..+|++..+. .|+. ..+..+..++.. .+ ........++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 5555555554432 222 246777778777764 4542 333333333221 00 111111122222111
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 335 FGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM-PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
...+.++.+|.++...+...|++++|...++++ ...|+...|..+...+.-.|++++|...++++...+|.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 133557788888877777789999999999988 45588878878888888999999999999999999887
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.04 E-value=0.052 Score=39.57 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=97.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 012108 280 LALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR 359 (471)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 359 (471)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+- +.. ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki--FDi------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY--FDL------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG--SCG------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh--cCc------------HhhhcHHH
Confidence 34567888888888887763 24555666665555556666666666666552 111 23566666
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 360 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
....+-.++ .+.......+......|.-+.-.+++.......+ |++.....++.+|.+.|+..+|.+++.+.-+.|+
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~-~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNE-VSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCC-CChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 666665554 3445566677778888888888888888655333 3788899999999999999999999999888887
Q ss_pred c
Q 012108 440 V 440 (471)
Q Consensus 440 ~ 440 (471)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.00 E-value=0.0047 Score=56.79 Aligned_cols=100 Identities=7% Similarity=-0.071 Sum_probs=72.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhH
Q 012108 312 LSACSHAGLVQEGCELFSRMEKDF--GVTRK----LEHYGCMVDLLGRARLLDRAIELIEAM---------PFEPT-ESI 375 (471)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 375 (471)
+..+...|++++|+.++++..+.. -+.|+ ..+++.|...|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444566788888888888887521 12232 456788888888889999888888765 24454 357
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHc-----CCCCCchhHH
Q 012108 376 LGALLSACVIHQDLEIGDRVAKMVCAK-----SNYLSDGELM 412 (471)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 412 (471)
++.|...|...|++++|+.+++++++. |++ .+.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE-HSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHH
Confidence 888999999999999999999988764 666 444433
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0029 Score=47.92 Aligned_cols=88 Identities=10% Similarity=-0.024 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHhHHHHHHHHHhhcCCchH
Q 012108 319 GLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRAR---LLDRAIELIEAM-PFE-P--TESILGALLSACVIHQDLEI 391 (471)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 391 (471)
+....+.+-|.+..+ .-+++..+.-.+..++++.+ +.+++..++++. ... | ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345566666666655 23367777777777888877 556788888776 222 4 23455566667788888888
Q ss_pred HHHHHHHHHHcCCCCCch
Q 012108 392 GDRVAKMVCAKSNYLSDG 409 (471)
Q Consensus 392 a~~~~~~~~~~~~~~~~~ 409 (471)
|.+.++.+++..|. +..
T Consensus 90 A~~y~~~lL~ieP~-n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQ-NNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHhcCCC-CHH
Confidence 88888888888886 443
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.89 E-value=0.0045 Score=44.05 Aligned_cols=73 Identities=12% Similarity=-0.106 Sum_probs=47.0
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchh
Q 012108 340 KLEHYGCMVDLLGRARLLDRAIELIEAM-----P----FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGE 410 (471)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 410 (471)
+....-.|...+.+.|+++.|...|+.. . -.+...++..+..++.+.|+++.|...++++.+..|. ++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHH
Confidence 3444556677777777777777777664 0 1123456677777777777777777777777777776 5554
Q ss_pred HHH
Q 012108 411 LMM 413 (471)
Q Consensus 411 ~~~ 413 (471)
...
T Consensus 83 ~~n 85 (104)
T 2v5f_A 83 NGN 85 (104)
T ss_dssp HHH
T ss_pred Hhh
Confidence 433
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.88 E-value=0.00068 Score=61.22 Aligned_cols=371 Identities=10% Similarity=0.077 Sum_probs=199.4
Q ss_pred cccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC--CCcccHHHHHHHHH
Q 012108 10 NYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE--KDIIAWNSMLDAFA 87 (471)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 87 (471)
+..|+.|..+....|.+.+|.+-|- +. .|+..|..++....+.|.+++-.+.+....+ +++..=+.|+-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467777777777776666655332 21 2555667777777777777777777766554 45566677777777
Q ss_pred cCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhc------------------------CCCChhhHHH
Q 012108 88 SCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV------------------------PAKDVVSWNS 143 (471)
Q Consensus 88 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------------------------~~~~~~~~~~ 143 (471)
+.++..+-.+++. .+|..-...+.+-|...|.++.|+-+|..+ ...++.+|-.
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 7777555433322 234444556666777777777776666665 1246678888
Q ss_pred HHHHHHhCCCHHHHHHHHHhc-cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 012108 144 LILAYTNAGEMEKAGEMFKKM-LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLET 222 (471)
Q Consensus 144 l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 222 (471)
+-.+|...+++.-|.-.--.+ +.++. ...++..|-..|.+++-+.+++.-... -....-.|+.|.-.|++- ++++
T Consensus 205 V~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHH
Confidence 888888888877765443333 22221 123455567777777777777766522 123445566666555543 3333
Q ss_pred HHHHHHHHH-HcCCC------CchhHHHHHHHHHHhcCChHHHHHHH-------------hcCCC--CChhhHH------
Q 012108 223 GARIHVYAT-DNGLA------SNPHATTALIDMYAKCGSIEQSLEVF-------------YKSQV--KDVFCWN------ 274 (471)
Q Consensus 223 a~~~~~~~~-~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~--~~~~~~~------ 274 (471)
..+.++..- +.+++ -....|..++-.|++-.+++.|.... .++.. .|...|-
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FY 360 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 360 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHH
Confidence 333332211 11111 12456777777777777777665332 11111 2333333
Q ss_pred ---------HHHHHHHhcCChHHHHHHHHHHHhC--------CC--CCCHHHHHHHHHHHhccCcHHHHH----------
Q 012108 275 ---------AMILGLALHGYGYAALKLLGEMNDS--------CV--KADDITFIGLLSACSHAGLVQEGC---------- 325 (471)
Q Consensus 275 ---------~l~~~~~~~~~~~~a~~~~~~~~~~--------~~--~p~~~~~~~l~~~~~~~~~~~~a~---------- 325 (471)
-|+..+...=+..++.++|.+.-.. .+ .-+...-..+-..|....+++.-.
T Consensus 361 L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD 440 (624)
T 3lvg_A 361 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFD 440 (624)
T ss_dssp TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSC
T ss_pred HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc
Confidence 3444443334445555554432110 00 112222233334445554443322
Q ss_pred --HHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 326 --ELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 326 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
.+-+++.+ .+-...-..-...|.+.++++++.++.++=+.- .-.|......|+.+-++++++-..+.+
T Consensus 441 ~i~LA~rLEk----HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDkly------kDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 441 NISLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLY------KDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp TTHHHHHHHT----CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCT------TGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhh----CchHHHHHHHHHHHHhcccHHHHHHHHHhcccH------HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 22222222 122333344445677888888888776544322 222334456677777777777776665
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.13 Score=40.01 Aligned_cols=105 Identities=11% Similarity=0.109 Sum_probs=70.6
Q ss_pred HHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 012108 146 LAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGAR 225 (471)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 225 (471)
+.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456788888888887765 4667888888888888888888888877543 3344445556777777666
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 012108 226 IHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQV 267 (471)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (471)
+-+.....| -++.-...+.-.|+++++.++|.+...
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 666555554 133344445566777777777655443
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.73 E-value=0.45 Score=45.71 Aligned_cols=313 Identities=8% Similarity=-0.018 Sum_probs=150.1
Q ss_pred ccCCHhHHHHHhcccCCCCccc---HHHHHHHHHcCCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHh
Q 012108 57 SLRCIDDAFKVFEKMPEKDIIA---WNSMLDAFASCGQMDHAMKLIDLMPLK--DVTSFNIMISGYARIGKIHSARYIFD 131 (471)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 131 (471)
+.|++..+..+...+..-.... |..+...+ ......+...++++-... ....-...+..+.+.+++......+.
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~ 96 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP 96 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC
T ss_pred HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc
Confidence 4577777777766654311122 22222111 122455666666655432 12233444555666666766666555
Q ss_pred hcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhc---cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012108 132 KVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKM---LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT 208 (471)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 208 (471)
. .+.+...-.....+....|+..+|......+ ....+..++.++..+.+.| ...+...+.
T Consensus 97 ~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g----------------~lt~~~~~~ 159 (618)
T 1qsa_A 97 E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG----------------KQDPLAYLE 159 (618)
T ss_dssp S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT----------------CSCHHHHHH
T ss_pred C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCC----------------CCCHHHHHH
Confidence 4 3334444444555566666655555544443 1112233333333333322 211111121
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCChHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCC
Q 012108 209 SVLSACANLGSLETGARIHVYATDNGLASNPH-ATTALIDMYAKCGSIEQSLEVFYKSQVKD--VFCWNAMILGLALHGY 285 (471)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 285 (471)
-+......|+...|..+... ++++.. ....++..+. +...+..........+ ...+..-+.-+.+ .+
T Consensus 160 -R~~~al~~~~~~~a~~l~~~-----l~~~~~~~a~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d 229 (618)
T 1qsa_A 160 -RIRLAMKAGNTGLVTVLAGQ-----MPADYQTIASAIISLAN---NPNTVLTFARTTGATDFTRQMAAVAFASVAR-QD 229 (618)
T ss_dssp -HHHHHHHTTCHHHHHHHHHT-----CCGGGHHHHHHHHHHHH---CGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HC
T ss_pred -HHHHHHHCCCHHHHHHHHHh-----CCHHHHHHHHHHHHHHh---ChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cC
Confidence 12233344555555444332 223322 2233333322 2233333333222111 1112222333333 37
Q ss_pred hHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 012108 286 GYAALKLLGEMNDSCVKADDIT----FIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAI 361 (471)
Q Consensus 286 ~~~a~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (471)
.+.|...+......+ ..+... ...+.......+...++...+..... . ..+.....-.+....+.|+++.|.
T Consensus 230 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--R-SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--T-CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--c-CCChHHHHHHHHHHHHCCCHHHHH
Confidence 788999998876543 223322 22233334445535566666666544 1 233333334444455779999999
Q ss_pred HHHHhCCCCC--CHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 012108 362 ELIEAMPFEP--TESILGALLSACVIHQDLEIGDRVAKMVCA 401 (471)
Q Consensus 362 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (471)
..|+.|+..+ ...-.-=+..++...|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999995433 233333456677788999999999988864
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.58 E-value=0.0088 Score=50.58 Aligned_cols=54 Identities=4% Similarity=-0.081 Sum_probs=26.5
Q ss_pred CCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCc
Q 012108 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASC-GQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 387 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 440 (471)
|+.++|.+.|+++++.+|.-+..++..+++.+++. |+.++|.+.+++.....+.
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45555555555555555531244555555554442 5555555555555544444
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.57 E-value=0.52 Score=47.20 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=22.9
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 012108 95 AMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVP 134 (471)
Q Consensus 95 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 134 (471)
+.++|.++.. .-|..+++++.+.++.+.+.++|..+.
T Consensus 221 l~~Iy~k~~~---~dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 221 SFDFLMNMPN---CDYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHSSS---CCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCc---hhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555432 235666777777777777777777753
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.43 E-value=0.13 Score=37.52 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=82.2
Q ss_pred HcCCCHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhCCCHHHHHHHHHhc
Q 012108 87 ASCGQMDHAMKLIDLMPLK-DVTSFNIMISGYARIGKIHSARYIFDKVPA-KDVVSWNSLILAYTNAGEMEKAGEMFKKM 164 (471)
Q Consensus 87 ~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 164 (471)
.-.|..++..++..+...+ +..-+|.++--....-+-+...++++.+-+ -|. ..+|++......+-.+
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGVIN 87 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHHHh
Confidence 4456666666666665544 445566666555555555555555544411 011 1233344333333332
Q ss_pred cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 012108 165 LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLA 236 (471)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (471)
-. +....+..+.....+|.-++-.+++..+.. +.+|+......+..+|.+.|+..++.+++.++.+.|++
T Consensus 88 n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 88 NT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp TC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred cc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 22 334455666777778888888888887644 24667777777788888888888888888888887753
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.31 E-value=0.015 Score=40.15 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 339 RKLEHYGCMVDLLGRARL---LDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.++..+..+..++...++ .++|..++++. ...| ++.....+...+.+.|++++|+..|+++++..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445555555555543333 46666666665 2233 4556666666677777777777777777776665
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.26 Score=38.24 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=22.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012108 216 NLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265 (471)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (471)
..|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 445555555554433 23445555555555555555555555444
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.22 E-value=0.031 Score=42.25 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=34.7
Q ss_pred CCHhHHHHHHHHHhhcC---CchHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 371 PTESILGALLSACVIHQ---DLEIGDRVAKMVCAKS-NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 371 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
++..+...+..++++.+ +.++++.+|+...+.+ |.-....+..|+-+|.+.|++++|.++++++.+..|
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34444444555555544 3445555555555554 310344555555555555555555555555555444
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.13 E-value=0.057 Score=40.29 Aligned_cols=100 Identities=5% Similarity=0.037 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHhHHhcCCCCCh-hHHHHHHHHH------hhcCCHHHHHHHHHhC-C-
Q 012108 304 DDITFIGLLSACSHAGLV------QEGCELFSRMEKDFGVTRKL-EHYGCMVDLL------GRARLLDRAIELIEAM-P- 368 (471)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~------~~~g~~~~A~~~~~~~-~- 368 (471)
|..++-..+...-+.|+. ++..++|+++.. .++|+. ..|...+..+ ...++.++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 556666666666666776 677777777776 455542 1122222111 2234555555555544 0
Q ss_pred CCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 369 FEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 369 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.+--...|.....--.+.|+...|.+++.+++..+|.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 0111444444444444555555555555555555555
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.04 E-value=0.034 Score=47.05 Aligned_cols=103 Identities=11% Similarity=0.052 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHhhc-----CCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHhh-cCC
Q 012108 321 VQEGCELFSRMEKDFGVTRK---LEHYGCMVDLLGRA-----RLLDRAIELIEAM-PFEPT--ESILGALLSACVI-HQD 388 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g~ 388 (471)
...|...++++.+ +.|+ ...|..+...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4566666666666 3444 55777788888774 8888888888887 45563 5666667777777 488
Q ss_pred chHHHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 389 LEIGDRVAKMVCAKSNY--LSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 389 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
.+++.+.+++++...|. |+....+.+ .-.+|..+++++
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~ 295 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHh
Confidence 99999999999988887 554433333 234555555544
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.96 E-value=0.077 Score=37.46 Aligned_cols=64 Identities=6% Similarity=-0.097 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 012108 170 ITWNTMVTGYLRSQLYIEVVDLFDEMKAGN------VKPDYLTVTSVLSACANLGSLETGARIHVYATDN 233 (471)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (471)
..+..|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334455556666666666666666554320 1123344555666666666666666666666654
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.77 E-value=1.6 Score=43.75 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=9.4
Q ss_pred HHhccCcHHHHHHHHHHhHH
Q 012108 314 ACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~ 333 (471)
+|+..|+.....+++..+.+
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34445554444445544444
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.65 E-value=0.075 Score=39.67 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=27.8
Q ss_pred CCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 387 QDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 387 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
+|.++|.++|+.+++..... ...|...+..-.++|+...|..++.+....++.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555555544332 444445555555555555555555555554443
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.34 E-value=1.7 Score=40.00 Aligned_cols=246 Identities=12% Similarity=0.085 Sum_probs=140.5
Q ss_pred ccchhHHHHHHHHHHHhc-----cCCchhHHHHHHHHHhccCCHhHHHHHhcccCCC---CcccHHHHHHH----HHcCC
Q 012108 23 LSSSCIGLMLHGQTIKTG-----FCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK---DIIAWNSMLDA----FASCG 90 (471)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~----~~~~g 90 (471)
.|+++.|.+.+-.+.+.. ...+..+...++..|...|+++.....+.-+.+. .......+++. .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 377888888776665432 2335567888899999999999886666554331 11222233332 22222
Q ss_pred --CHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CC-----hhhHHHHHHHHH
Q 012108 91 --QMDHAMKLIDLMPLK----------DVTSFNIMISGYARIGKIHSARYIFDKVPA----KD-----VVSWNSLILAYT 149 (471)
Q Consensus 91 --~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~ 149 (471)
+.+.-+.+.+..... .......+...+...|++.+|..++..+.. .+ ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 233334444444322 112345678888899999999988888721 11 345666778888
Q ss_pred hCCCHHHHHHHHHhccc------cC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH----HHHHH
Q 012108 150 NAGEMEKAGEMFKKMLV------KN----VITWNTMVTGYLRSQLYIEVVDLFDEMKAG-NVKPDYLTVTS----VLSAC 214 (471)
Q Consensus 150 ~~~~~~~A~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~----l~~~~ 214 (471)
..+++.+|..+++++.. ++ ...+...+..+...++|.+|.+.|.+.... .+..|...+.. ++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 89999999888887611 11 234666777788888998888888777542 11112222211 11111
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CChHHHHHHHhcCCCC
Q 012108 215 ANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKC--GSIEQSLEVFYKSQVK 268 (471)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~ 268 (471)
.-.+....-..+.........-++...+..++.+|... .+++...+.|.....+
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 11111122222223322222235566777788887654 4567777777665443
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.30 E-value=0.033 Score=40.46 Aligned_cols=94 Identities=13% Similarity=-0.009 Sum_probs=53.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHhHHHHHHHHHhhc
Q 012108 314 ACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDR---AIELIEAM-PFE-P--TESILGALLSACVIH 386 (471)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~ 386 (471)
.-........+.+-|..... .+. ++..+--.+..++.+..+... ++.+++++ ... | .....-.|.-++.+.
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 33334445555565655554 232 555665566667776665554 66666665 222 3 122333455566777
Q ss_pred CCchHHHHHHHHHHHcCCCCCchh
Q 012108 387 QDLEIGDRVAKMVCAKSNYLSDGE 410 (471)
Q Consensus 387 g~~~~a~~~~~~~~~~~~~~~~~~ 410 (471)
|++++|.+.++.+++..|. +...
T Consensus 88 g~Y~~A~~~~~~lL~~eP~-n~QA 110 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQ-NNQA 110 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CHHH
Confidence 7777777777777777776 4443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.12 Score=50.48 Aligned_cols=54 Identities=17% Similarity=-0.022 Sum_probs=49.8
Q ss_pred HHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012108 381 SACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMN 435 (471)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (471)
.-|...|+++.|+.+.+++....|. +-.+|..|+.+|.+.|+|+.|+-.++.+-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4466789999999999999999999 99999999999999999999999999883
No 241
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.97 E-value=1.2 Score=36.04 Aligned_cols=79 Identities=10% Similarity=0.033 Sum_probs=29.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCC
Q 012108 106 DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQL 184 (471)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (471)
+...-...+.++...++.+....+.+.+..++..+....+.++.+.++.+....+.+.+..++...-...+.++.+.|+
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 3333333444444444333322333333334444444444444444443322222222233343333333444444333
No 242
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.94 E-value=1.2 Score=35.99 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=104.6
Q ss_pred CchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 012108 43 GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122 (471)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 122 (471)
++..+-...+..+.+.|+.+....+.+.+..++...-...+.++.+.|+.+..-.+.+.+..+++..-...+.++.+.|+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 56666667777777777766566666666667777777778888888876555555566666688888888999999988
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012108 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKA 197 (471)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 197 (471)
.+....+.+.+..++..+....+.++.+.++.+....+...+..++...-...+.++.+.+. ..+...+..+.+
T Consensus 111 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 111 ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 76666666666667888888888888888775544444444455666665566666666665 344555555544
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.84 E-value=1.7 Score=37.43 Aligned_cols=168 Identities=10% Similarity=0.064 Sum_probs=101.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHH
Q 012108 140 SWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVD----LFDEMKAGNVKPDYLTVTSVLSACA 215 (471)
Q Consensus 140 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~l~~~~~ 215 (471)
.|.++..-|.+++++++|.+++.. -...+.+.|++..|-+ +++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566777888888888887755 2334566677665554 4555666788888888888877765
Q ss_pred ccCCh-----HHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhc---CC
Q 012108 216 NLGSL-----ETGARIHVYATDNGL--ASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALH---GY 285 (471)
Q Consensus 216 ~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 285 (471)
..... +-..+......+.|- .-++..+..+...|.+.|++.+|...|--....+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 53221 222233333334432 247888999999999999999999987643333444444444333332 22
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 286 GYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 286 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
..++ +...-..++ -|.-.++...|..+++...+
T Consensus 184 ~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 1111 111112222 34457889888888887765
No 244
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.83 E-value=1.2 Score=35.58 Aligned_cols=171 Identities=11% Similarity=0.067 Sum_probs=102.4
Q ss_pred CchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 012108 43 GHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGK 122 (471)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 122 (471)
++..+-...+..+.+.|+.+....+.+.+..++...-...+.++.+.|..+..-.+.+.+..+++..-...+.++.+.++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444444555555555544444455555556665556666666666665555455555555677777778888888887
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 012108 123 IHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKP 202 (471)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 202 (471)
.+....+.+.+..++..+....+.++.+.++.+....+...+..++...-...+.++.+.|.. ++...+..+.+. +
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d---~ 181 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE-RVRAAMEKLAET---G 181 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---C
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---C
Confidence 665555555556677777777777777777655444444444556666666666777776653 455556665542 4
Q ss_pred CHHHHHHHHHHHHcc
Q 012108 203 DYLTVTSVLSACANL 217 (471)
Q Consensus 203 ~~~~~~~l~~~~~~~ 217 (471)
+...-...+.++.+.
T Consensus 182 ~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 182 TGFARKVAVNYLETH 196 (201)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHH
Confidence 444444445555443
No 245
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.77 E-value=1.3 Score=35.49 Aligned_cols=182 Identities=10% Similarity=0.036 Sum_probs=116.4
Q ss_pred HHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH
Q 012108 64 AFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWNS 143 (471)
Q Consensus 64 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 143 (471)
-..+++.+..++...-...+..+.+.|..+..-.+.+.+..++...-...+.++...|..+....+.+.+..++..+...
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~ 95 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQS 95 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHH
Confidence 33444445556666666666777777765555555555656677777778888888887766666666666778888888
Q ss_pred HHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 012108 144 LILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETG 223 (471)
Q Consensus 144 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 223 (471)
.+.++.+.++.+....+.+.+..++...-...+.++.+.++. .+...+..+.. .++...-...+.++...|.. .+
T Consensus 96 a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~ 170 (201)
T 3ltj_A 96 AAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE-RV 170 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HH
T ss_pred HHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hH
Confidence 888888888766555555555666776666667777777764 34455555554 35666666677777777764 45
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 012108 224 ARIHVYATDNGLASNPHATTALIDMYAKCG 253 (471)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (471)
...+..+.+. ++..+-...+.++.+.+
T Consensus 171 ~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 171 RAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 5555555543 34555555555555443
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.60 E-value=0.51 Score=34.93 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 012108 391 IGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIV 440 (471)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (471)
+++.+++.....+|.-.......|+-++.+.|++++|.++.+.+++..|.
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44555555555444323444445555555555555555555555544443
No 247
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.53 E-value=0.47 Score=34.45 Aligned_cols=69 Identities=12% Similarity=-0.051 Sum_probs=31.4
Q ss_pred CCHhHHHHHHHHHhhcCCchH---HHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 012108 371 PTESILGALLSACVIHQDLEI---GDRVAKMVCAKS-NYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGI 439 (471)
Q Consensus 371 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 439 (471)
|+..+--.+..++.+..+... ++.+++.....+ |.-.......|+-++.+.|++++|.++++.+++..|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 344444444444444443333 445555544443 211334444455555555555555555555544444
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.44 E-value=2.3 Score=36.99 Aligned_cols=167 Identities=14% Similarity=0.075 Sum_probs=98.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHc
Q 012108 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDL----FDEMKAGNVKPDYLTVTSVLSACAN 216 (471)
Q Consensus 141 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~l~~~~~~ 216 (471)
|.++..-|.+.+++++|.+++.. -...+.+.|+...+-++ ++-+.+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45566778888888888887754 23345556665554443 3555666788888877777777665
Q ss_pred cCChH-HHHHHHHH----HHHcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 012108 217 LGSLE-TGARIHVY----ATDNG--LASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289 (471)
Q Consensus 217 ~~~~~-~a~~~~~~----~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 289 (471)
...-+ .=..+.+. -.+.| ..-++.....+...|.+.+++.+|...|--...+.+..+..++.-+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 44321 11222322 33333 33477888899999999999999999885333233355544444333332211
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 290 LKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 290 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
.++...-..++ -|...++...|..+++...+
T Consensus 185 ------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11222222233 34556788888887766654
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.19 E-value=3.4 Score=38.01 Aligned_cols=163 Identities=10% Similarity=0.044 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCC--CC--hh
Q 012108 273 WNAMILGLALHGYGYAALKLLGEMNDS--CVKAD---DITFIGLLSACSHAGLVQEGCELFSRMEKDF-GVT--RK--LE 342 (471)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~--~~ 342 (471)
...|...+...|++.+|..++..+... |.... ...+...++.|...+++..|..++.++.... ... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345667777778888888877776532 22211 1345555677777888888887777764211 111 21 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHhHHH----HHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHH
Q 012108 343 HYGCMVDLLGRARLLDRAIELIEAMP----FEPTESILG----ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMF 414 (471)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 414 (471)
.+...+..+...+++.+|.+.|.++- ...+...+. .++.+..-.+....-..++........-++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 45566666677778877777766651 111222111 1111111112112222222222222222245667777
Q ss_pred HHHHHhc--CCHHHHHHHHHHhh
Q 012108 415 ANLYASC--GQWEEANRWRNMMN 435 (471)
Q Consensus 415 ~~~~~~~--g~~~~A~~~~~~m~ 435 (471)
..+|... .+|+.+.+.|+...
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHhchHhhhHHHHHHHHHHh
Confidence 7777654 45666666555443
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.64 E-value=0.33 Score=35.42 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=41.9
Q ss_pred CCCHhHHHHHHHHHhhcC---CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 370 EPTESILGALLSACVIHQ---DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 370 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
.|+..+--.+..++.+.. +..+++.+++...+.+|.-....+..|+-++.+.|++++|.++.+.+.+..|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 344444444444555443 334566666666666653245566666677777777777777777666655543
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.42 E-value=0.21 Score=45.18 Aligned_cols=54 Identities=7% Similarity=-0.072 Sum_probs=26.2
Q ss_pred HHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 380 LSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
+..+...|++.++...++.+....|- +...+..++.+|.+.|+..+|.+.|+++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444555555444444444444 4444555555555555555554444443
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.02 E-value=5.7 Score=34.52 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHh
Q 012108 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLL----GEMNDSCVKADDITFIGLLSACS 316 (471)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~~ 316 (471)
+|.++..-|.+.+++++|++++.. -...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455667778899999999988643 234455667766655544 55556678888888888887776
Q ss_pred ccCcHH-HHHHHHHHhHH---hcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCch
Q 012108 317 HAGLVQ-EGCELFSRMEK---DFGV--TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLE 390 (471)
Q Consensus 317 ~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 390 (471)
....-+ .=..+.+++.+ ..|- .-++.....+...|.+.+++.+|...|= .+-.+++..+..++..+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 544311 11223333332 1232 2367888889999999999999998883 343444567766655444433322
Q ss_pred HHHHHHHHHHHcCCCCCchhHH-HHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 391 IGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
....|. ..+--|...|+...|..+++...+
T Consensus 185 ----------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ----------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ----------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 233333 234456778899999887776654
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.76 E-value=1.2 Score=34.04 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=32.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 012108 276 MILGLALHGYGYAALKLLGEMNDS-CVKAD-------DITFIGLLSACSHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (471)
-+..+...|.++.|+-+.+.+... +..|+ ..++..+..++...+++.+|...|+++.+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344555556666666555554321 01222 12445566677777777777777777644
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.43 E-value=1.3 Score=30.32 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012108 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349 (471)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (471)
+.-+..+-++.+....+.|++......+++|.+.+++..|..+|+-++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4556777888888888999999999999999999999999999999987443 33556777765
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.11 E-value=1.6 Score=42.91 Aligned_cols=124 Identities=14% Similarity=0.053 Sum_probs=80.1
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHhccccChH--H--HHHHHHHHHhcC-CHHHHHHHHHHHHhC------CCCCCH-----
Q 012108 142 NSLILAYTNAGE-MEKAGEMFKKMLVKNVI--T--WNTMVTGYLRSQ-LYIEVVDLFDEMKAG------NVKPDY----- 204 (471)
Q Consensus 142 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~--~--~~~l~~~~~~~~-~~~~a~~~~~~m~~~------g~~p~~----- 204 (471)
..++..+...++ ++.|.++|+++...++. . ...++..+.+.+ +--+|.+++.+.++. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455666666766 58899999998544332 2 222333333332 233456666554421 112111
Q ss_pred ------HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012108 205 ------LTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQ 266 (471)
Q Consensus 205 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (471)
.....-...|...|+++.|.++-++..... |.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222345667899999999999998874 6678899999999999999999999887764
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.83 E-value=1.3 Score=33.74 Aligned_cols=120 Identities=12% Similarity=-0.067 Sum_probs=66.8
Q ss_pred CCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 012108 300 CVKADD--ITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKL-------EHYGCMVDLLGRARLLDRAIELIEAM--- 367 (471)
Q Consensus 300 ~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 367 (471)
|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444433 345555677788899999988888766533333442 35566778888889998888888774
Q ss_pred ----CCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 368 ----PFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 368 ----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
.-.++. ...+. ....... ......+.+.-..+..+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~--~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKV--RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC-----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCc--ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 11110 0000000 0001113456667888899999999999888876
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.64 E-value=9.1 Score=34.30 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhhHHHHHHHHHhC-CCHHHHHHHHHhccc---cChHHH-----
Q 012108 110 FNIMISGYARIGKIHSARYIFDKVPA--------KDVVSWNSLILAYTNA-GEMEKAGEMFKKMLV---KNVITW----- 172 (471)
Q Consensus 110 ~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~---~~~~~~----- 172 (471)
...+...|.+.|+.++..+++....+ ........+++.+... +..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555422 1223344455555443 223333333333311 111222
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCchhHHHH
Q 012108 173 -NTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY-----LTVTSVLSACANLGSLETGARIHVYATDN--GLASNPHATTA 244 (471)
Q Consensus 173 -~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 244 (471)
..++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...+++.++...+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 25677888888888888888887653112221 23445566777888888888888777542 22233333221
Q ss_pred ----HHHHHH-hcCChHHHHHHHh
Q 012108 245 ----LIDMYA-KCGSIEQSLEVFY 263 (471)
Q Consensus 245 ----l~~~~~-~~~~~~~a~~~~~ 263 (471)
-+..+. ..+++..|...|-
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHH
Confidence 123344 5677777766654
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.13 E-value=10 Score=34.02 Aligned_cols=163 Identities=10% Similarity=-0.018 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCC---chhHHHHHHHHHHhcCC-hHHHHHHHhcCCC---CChhhH---
Q 012108 205 LTVTSVLSACANLGSLETGARIHVYATDNG-LAS---NPHATTALIDMYAKCGS-IEQSLEVFYKSQV---KDVFCW--- 273 (471)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~--- 273 (471)
.....+...|.+.|+.++..+++......= ..+ .......+++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888898888888877654321 111 23445667777666433 3333333332221 111223
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCChhHH
Q 012108 274 ---NAMILGLALHGYGYAALKLLGEMNDSCVKADD-----ITFIGLLSACSHAGLVQEGCELFSRMEKDFG-VTRKLEHY 344 (471)
Q Consensus 274 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 344 (471)
..++..|...|++.+|.+++.++...=-..|. ..+..-++.|...+++.++...+.......+ +.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25678888899999998888887753111121 2344456677788888888888887765321 21333222
Q ss_pred HH----HHHHHh-hcCCHHHHHHHHHhC
Q 012108 345 GC----MVDLLG-RARLLDRAIELIEAM 367 (471)
Q Consensus 345 ~~----l~~~~~-~~g~~~~A~~~~~~~ 367 (471)
.. -...+. ..+++..|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 122344 678888888887665
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.94 E-value=13 Score=38.94 Aligned_cols=80 Identities=8% Similarity=0.048 Sum_probs=41.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcCChHHHHHHHhcCCCC--ChhhHHHHHHH
Q 012108 206 TVTSVLSACANLGSLETGARIHVYATDNGLASNP----HATTALIDMYAKCGSIEQSLEVFYKSQVK--DVFCWNAMILG 279 (471)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~ 279 (471)
-|..++..+.+.+.++.+.++-..+++...+.+. ..|..+.+.+...|++++|...+-.+... -......|+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3455555666666666666665555543211111 24555666666666666666665443321 22344455555
Q ss_pred HHhcCC
Q 012108 280 LALHGY 285 (471)
Q Consensus 280 ~~~~~~ 285 (471)
+|..|+
T Consensus 981 lce~~~ 986 (1139)
T 4fhn_B 981 LTKQGK 986 (1139)
T ss_dssp HHHHCC
T ss_pred HHhCCC
Confidence 555444
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.85 E-value=3.3 Score=28.26 Aligned_cols=77 Identities=8% Similarity=-0.012 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 012108 25 SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104 (471)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 104 (471)
.-++|.-|-+.+...+- ...+-..-+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++...+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56888888888887653 44444455667788999999999999988899988887765 567887888777755554
Q ss_pred C
Q 012108 105 K 105 (471)
Q Consensus 105 ~ 105 (471)
.
T Consensus 97 s 97 (115)
T 2uwj_G 97 S 97 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.85 E-value=2.5 Score=38.04 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 012108 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEK----DFGVTRKLEHY 344 (471)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 344 (471)
..++..+...|+++++...+..+... -+.+...+..+|.++.+.|+..+|++.|+.+.+ +.|+.|.+.+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556667778888888777777665 244677788888888888888888888777554 45777776553
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.78 E-value=3.4 Score=43.31 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--------------
Q 012108 274 NAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTR-------------- 339 (471)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 339 (471)
..++..+...+.++-+.++..-. +-++..-..+..++...|++++|.+.|+++.. ++..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhcccccc
Confidence 34555666677776666544332 22444444566777888888888888877653 2211
Q ss_pred ---------ChhHHHHHHHHHhhcCCHHHHHHHHHhC----C-CCCCH--hHHHHHHHHHhhcCCchHHHHHHHHHHHcC
Q 012108 340 ---------KLEHYGCMVDLLGRARLLDRAIELIEAM----P-FEPTE--SILGALLSACVIHQDLEIGDRVAKMVCAKS 403 (471)
Q Consensus 340 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (471)
-...|.-++..+.+.|.++.+.++-+.. . ..++. ..|..++..+...|++++|-..+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 1234666777777888887777665543 2 12221 257788888889999999988887776555
Q ss_pred CCCCchhHHHHHHHHHhcCCHHH
Q 012108 404 NYLSDGELMMFANLYASCGQWEE 426 (471)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~ 426 (471)
.+ ...+..|+...+..|..+.
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhh
Confidence 44 6677777777776665444
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.77 E-value=3.5 Score=28.18 Aligned_cols=77 Identities=12% Similarity=-0.014 Sum_probs=58.5
Q ss_pred chhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 012108 25 SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPL 104 (471)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 104 (471)
.-++|.-|-+.+...+- ...+-..-+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++...+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56888888888887653 44444455667788999999999999998899998887765 467777888777756655
Q ss_pred C
Q 012108 105 K 105 (471)
Q Consensus 105 ~ 105 (471)
.
T Consensus 98 s 98 (116)
T 2p58_C 98 S 98 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.63 E-value=15 Score=35.30 Aligned_cols=382 Identities=9% Similarity=-0.048 Sum_probs=210.9
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCC-CCc-ccHHHHHHHHHcC
Q 012108 12 SFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPE-KDI-IAWNSMLDAFASC 89 (471)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~ 89 (471)
.|.....++ +.|++..+.++...+....+. .-..|..+...+ ......+...++++... |-. ..-+.-+..+.+.
T Consensus 9 ~~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~ 85 (618)
T 1qsa_A 9 RYAQIKQAW-DNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARR 85 (618)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhC
Confidence 344444444 468888777776665432221 112344433322 23467788888777654 322 2334556777889
Q ss_pred CCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhCCCHHHHHHHHHhccc
Q 012108 90 GQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIHSARYIFDKV---PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV 166 (471)
Q Consensus 90 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 166 (471)
+++...+..+.. ...+...-.....+....|+..+|......+ ....+..+..++..+.+.|.+....
T Consensus 86 ~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~-------- 156 (618)
T 1qsa_A 86 EDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLA-------- 156 (618)
T ss_dssp TCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHH--------
T ss_pred CCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHH--------
Confidence 999999997776 4346777777888899999987777666555 2345666777777777666543321
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCchh---HH
Q 012108 167 KNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV-TSVLSACANLGSLETGARIHVYATDNGLASNPH---AT 242 (471)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 242 (471)
.|. -+......|+...|..+...+ .++.... ..++....+ ...+..... . ..++.. .+
T Consensus 157 ----~~~-R~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~---~--~~~~~~~~~~~ 218 (618)
T 1qsa_A 157 ----YLE-RIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMA 218 (618)
T ss_dssp ----HHH-HHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHH
T ss_pred ----HHH-HHHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHh---c--cCCChhhHHHH
Confidence 222 234566678888777765432 3343222 233333322 223322221 1 123322 22
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC---CChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012108 243 TALIDMYAKCGSIEQSLEVFYKSQV---KDVF----CWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSAC 315 (471)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 315 (471)
..-+.-+.+ .+.+.|...+..... -+.. .+..++..+...+...++...+...... .++.....-.+...
T Consensus 219 ~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~A 295 (618)
T 1qsa_A 219 AVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHH
Confidence 222333333 378999999876532 1222 2333333344455466777777776554 34444455555556
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHH
Q 012108 316 SHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRV 395 (471)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 395 (471)
.+.|+++.|...|+.+... ........-=+..++...|+.++|..+|+.+.- + .+|..++.+ .+.|..-.. ..
T Consensus 296 lr~~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~-~--~~fYg~lAa-~~Lg~~~~~-~~ 368 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-Q--RGFYPMVAA-QRIGEEYEL-KI 368 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-S--CSHHHHHHH-HHTTCCCCC-CC
T ss_pred HHCCCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc-C--CChHHHHHH-HHcCCCCCC-CC
Confidence 6789999999999988762 112233233355677889999999999999842 2 234333322 233321100 00
Q ss_pred HHHHHHcCCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 396 AKMVCAKSNYLSD----GELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 396 ~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
....+.... ..-...+..+...|....|...+..+.+.
T Consensus 369 ----~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 369 ----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp ----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 000010000 01123455677889999998888777543
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.02 E-value=2.8 Score=28.76 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 012108 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247 (471)
Q Consensus 187 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (471)
++.+-++.+....+.|+.......+++|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455566666666677777777777777777777777777777766543 233445555543
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.37 E-value=12 Score=32.33 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHh
Q 012108 241 ATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKL----LGEMNDSCVKADDITFIGLLSACS 316 (471)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~~ 316 (471)
+|.++..-|.+.+++++|++++.. -...+.+.|+...|-++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677778889999999988643 23445667776666554 555566788899888888887765
Q ss_pred ccCcHH-HHHHHHHHhHH---hcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHhhc---C
Q 012108 317 HAGLVQ-EGCELFSRMEK---DFGV--TRKLEHYGCMVDLLGRARLLDRAIELIEAMPFEPTESILGALLSACVIH---Q 387 (471)
Q Consensus 317 ~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g 387 (471)
.....+ .=.++++++.+ +.|- .-++.....+...|.+.|++.+|...|- .+-..|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 11233333332 1122 2367888899999999999999998775 32122455555555444333 3
Q ss_pred CchHHHHHHHHHHHcCCCCCchhHH-HHHHHHHhcCCHHHHHHHHHHhhh
Q 012108 388 DLEIGDRVAKMVCAKSNYLSDGELM-MFANLYASCGQWEEANRWRNMMND 436 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 436 (471)
...+ ...|. ..+--|...|+...|..+++...+
T Consensus 183 ~~~e----------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDST----------------VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHH----------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred Ccch----------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222 22221 223346677899999888887653
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.77 E-value=3.1 Score=30.28 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012108 285 YGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVD 349 (471)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (471)
+.-+..+-++.+....+.|++......+++|.+.+++..|..+|+-++.+. .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 444677777888888899999999999999999999999999999998843 444666777765
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.75 E-value=5 Score=27.40 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 012108 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297 (471)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (471)
..-++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346677777777766552 33333334556778999999999999999899998877654 47788888888888888
Q ss_pred hCCCCCCHHHHHH
Q 012108 298 DSCVKADDITFIG 310 (471)
Q Consensus 298 ~~~~~p~~~~~~~ 310 (471)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 455555543
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.28 E-value=5.4 Score=27.28 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=62.1
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 012108 218 GSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMN 297 (471)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (471)
..-++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777766552 33333334456778999999999999999899998877754 36788888888887887
Q ss_pred hCCCCCCHHHHHH
Q 012108 298 DSCVKADDITFIG 310 (471)
Q Consensus 298 ~~~~~p~~~~~~~ 310 (471)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 455555543
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.32 E-value=1.9 Score=35.94 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 350 LLGRARLLDRAIELIEAM-PFEP-TESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.+.+.|++++|++....- +-.| |...-..++..+|-.|++++|.+-++...+.+|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 455677777777766544 3334 5556666777777788888888877777777766
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.97 E-value=7.4 Score=28.41 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 012108 187 EVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALID 247 (471)
Q Consensus 187 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (471)
+..+-++.+....+.|+.......+++|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 355556666666777777777777788888888888888777776543 333445655543
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.26 E-value=21 Score=29.83 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhc
Q 012108 279 GLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRK----LEHYGCMVDLLGRA 354 (471)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 354 (471)
.+.+.|++++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+ ..|+ ...|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 3456677777777776666652 44555566677777777777777777776665 2233 2233333321
Q ss_pred CCHHHHH-HHHHhC--C--CCCCHhHHHHHHHHHh--hcCCchHHHHHHHHHHHcCCC
Q 012108 355 RLLDRAI-ELIEAM--P--FEPTESILGALLSACV--IHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 355 g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~ 405 (471)
+... ++|.-- + +.....-...++.+.. ..|+.++|..+-.++.+.-|.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 1111 122111 0 1112223344444433 457777777777777766655
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.03 E-value=8.8 Score=35.03 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhccc------cChHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHH--H
Q 012108 140 SWNSLILAYTNAGEMEKAGEMFKKMLV------KNVITWNTMVTGYLRSQLYIEVVDLFDEMKA---GNVKPDYLTV--T 208 (471)
Q Consensus 140 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~--~ 208 (471)
+...+...|.+.|++++|.+.|.++.. .-...+-.+++.+...+++..+...+.+... .+-.|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677888888888888888887732 2345666777888888888888888877643 2222222110 1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH
Q 012108 209 SVLSACANLGSLETGARIHVYATD 232 (471)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~ 232 (471)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223456777777776665543
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.66 E-value=18 Score=28.70 Aligned_cols=52 Identities=4% Similarity=-0.096 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHhC---CC-CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q 012108 354 ARLLDRAIELIEAM---PF-EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNY 405 (471)
Q Consensus 354 ~g~~~~A~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (471)
.+...++.++|..| ++ .--...|......+...|++++|..+|+..++.+-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34344555555554 22 223455666666666677777777777777766655
No 275
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=81.59 E-value=23 Score=29.78 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=8.9
Q ss_pred CChhhHHHHHHHHHhcCCh
Q 012108 268 KDVFCWNAMILGLALHGYG 286 (471)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~ 286 (471)
++...-...+.++.+.|+.
T Consensus 204 ~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHHHHhCCH
Confidence 4444444444555555543
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.64 E-value=12 Score=34.23 Aligned_cols=94 Identities=13% Similarity=-0.023 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHH--
Q 012108 241 ATTALIDMYAKCGSIEQSLEVFYKSQV------KDVFCWNAMILGLALHGYGYAALKLLGEMND---SCVKADDITFI-- 309 (471)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~-- 309 (471)
+...+...|.+.|++++|.+.|.++.. .-...+-..++.+...+++..+...+.+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677777777777777777766543 1234566666777777777777777766543 22223222111
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHh
Q 012108 310 GLLSACSHAGLVQEGCELFSRMEKD 334 (471)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (471)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122334566777777777776663
No 277
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.61 E-value=16 Score=26.72 Aligned_cols=65 Identities=9% Similarity=0.006 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 302 KADDITFIGLLSACSHAGL---VQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 302 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
.|+..+-..+..++.+..+ ..+++.+++.+.+. +..-....+-.|.-++.+.|++++|.+..+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444444444444444433 33455555555542 21011223333333444444444444444443
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.83 E-value=18 Score=30.18 Aligned_cols=47 Identities=9% Similarity=-0.028 Sum_probs=22.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCChHHHHHHHh
Q 012108 217 LGSLETGARIHVYATDNGLASNPH--ATTALIDMYAKCGSIEQSLEVFY 263 (471)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 263 (471)
.++......+.+.+.+.|..++.. .-.+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344444445555555555443321 11123344455666666666665
No 279
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.55 E-value=28 Score=25.75 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=41.2
Q ss_pred CCChhHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCC-CH-hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCch
Q 012108 338 TRKLEHYGCMVDLLGRARLL---DRAIELIEAM-PFEP-TE-SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG 409 (471)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 409 (471)
.|+..+--.+..++.+..+. .+++.+++++ ...| +. ...-.|.-++.+.|++++|.+..+.+++..|. +..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC-CHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHH
Confidence 34444444445555554433 2444555544 1122 22 23344556788888999999999888888887 444
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.69 E-value=44 Score=27.66 Aligned_cols=19 Identities=11% Similarity=-0.092 Sum_probs=9.9
Q ss_pred HHHHhccCCHhHHHHHhcc
Q 012108 52 LKMYGSLRCIDDAFKVFEK 70 (471)
Q Consensus 52 ~~~~~~~g~~~~A~~~~~~ 70 (471)
+...+..|+.+-+..+++.
T Consensus 43 L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 4444455666555555554
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=70.11 E-value=41 Score=27.06 Aligned_cols=86 Identities=9% Similarity=-0.114 Sum_probs=48.9
Q ss_pred HHHHhhccchhHHHHHHHHHHHhccCCchh--HHHHHHHHHhccCCHhHHHHHhcccCCCC---cccHHHHHHHHHcCCC
Q 012108 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVY--VQTALLKMYGSLRCIDDAFKVFEKMPEKD---IIAWNSMLDAFASCGQ 91 (471)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~ 91 (471)
+...+..|+.+....+++.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-..++ ..-++ .+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCC
Confidence 444556688888888888777666544321 11234455556788877777776544332 22222 2333455677
Q ss_pred HHHHHHHHhcCC
Q 012108 92 MDHAMKLIDLMP 103 (471)
Q Consensus 92 ~~~A~~~~~~~~ 103 (471)
.+-+..+++...
T Consensus 92 ~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 92 PTCLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHcCC
Confidence 766666666543
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.97 E-value=32 Score=25.79 Aligned_cols=51 Identities=8% Similarity=-0.070 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 012108 391 IGDRVAKMVCAKSNYL-SDGELMMFANLYASCGQWEEANRWRNMMNDTGIVK 441 (471)
Q Consensus 391 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 441 (471)
++..+|..|...++-- -...|...+..+...|++.+|.++|+.-.+.+..|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3666666666554331 34455566666666777777777776666655544
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.56 E-value=13 Score=34.58 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhccCCHhHHHHHhcccCCCCc-cc------HH-HHHHHHHcCCCHHHHHHHHhc
Q 012108 46 YVQTALLKMYGSLRCIDDAFKVFEKMPEKDI-IA------WN-SMLDAFASCGQMDHAMKLIDL 101 (471)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~------~~-~li~~~~~~g~~~~A~~~~~~ 101 (471)
..+|.+++.|...+.++.|..+..+..-|.. .+ |. .+...+.-.+++.+|.+.|..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3455555555555666666665555443311 11 11 123444445555555555544
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.97 E-value=28 Score=25.29 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHH
Q 012108 242 TTALIDMYAKCGSIEQSLEVFYKSQVKD---VFCWNAMILGLALHGY--GYAALKLLGEMNDSCVKADDI 306 (471)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~ 306 (471)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3456677777788888888887776552 2333444444544432 345666777777666554433
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.66 E-value=40 Score=28.35 Aligned_cols=18 Identities=0% Similarity=-0.199 Sum_probs=9.2
Q ss_pred HHHhccCCHhHHHHHhcc
Q 012108 53 KMYGSLRCIDDAFKVFEK 70 (471)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~ 70 (471)
...+..|+.+-+..+++.
T Consensus 36 ~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 333445555555555554
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.60 E-value=49 Score=25.21 Aligned_cols=68 Identities=3% Similarity=-0.100 Sum_probs=32.9
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC
Q 012108 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFE-PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406 (471)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 406 (471)
.|+.....-+..--.++++.+....+..-++. --+..|......+-..|++.+|.++|+..++.+-.|
T Consensus 61 nD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp TCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 34443333333323334444443333333222 234455555555566666666666666666665553
No 287
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.19 E-value=8.8 Score=25.15 Aligned_cols=58 Identities=10% Similarity=-0.020 Sum_probs=36.1
Q ss_pred cccCCCCCcccHHHHHHHHhhcc-chhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCC
Q 012108 2 QELGVHADNYSFPLLLKAAGILS-SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60 (471)
Q Consensus 2 ~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 60 (471)
++.|++++..- ..++..+...+ ..-.+.++++.+.+.++..+..+-...+..+...|-
T Consensus 9 ~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 9 KKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566665443 45566666554 556677888887776655566666666666666653
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.53 E-value=24 Score=26.52 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHH
Q 012108 242 TTALIDMYAKCGSIEQSLEVFYKSQVKD---VFCWNAMILGLALHGY--GYAALKLLGEMNDSCVKADDI 306 (471)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~ 306 (471)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4456677777788888888887776552 2334444444444322 345666777777666544433
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.68 E-value=79 Score=26.48 Aligned_cols=49 Identities=6% Similarity=-0.012 Sum_probs=23.0
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012108 213 ACANLGSLETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKS 265 (471)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (471)
..+..|+.+.+..++ +.|..++..--.+.+...+..|+.+-+.-+++..
T Consensus 37 ~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 37 YAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 344556655444443 3343332221123344445566666666666543
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.46 E-value=56 Score=26.71 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=38.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 012108 176 VTGYLRSQLYIEVVDLFDEMKAG--NVKP----DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNPHATTALIDMY 249 (471)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (471)
+..+....++++|..++++..+. ++++ ........+..-.....-.-+..+.+.+ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 45566667777777666655431 1221 1111112222222222222233333333 22 33444455555666
Q ss_pred HhcCChHHHHHHH
Q 012108 250 AKCGSIEQSLEVF 262 (471)
Q Consensus 250 ~~~~~~~~a~~~~ 262 (471)
.+.|+.++|.++|
T Consensus 102 ~rLg~~~~A~~lf 114 (235)
T 2d2s_A 102 IKLGLPEQALDLF 114 (235)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCChhHHHHHH
Confidence 6666666666665
No 291
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.31 E-value=1.5e+02 Score=28.75 Aligned_cols=81 Identities=10% Similarity=-0.045 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHh---cCCHHHH
Q 012108 112 IMISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLR---SQLYIEV 188 (471)
Q Consensus 112 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a 188 (471)
....++.-.|+++.|.+.+-.....+.+.+... +...|-+.....++..-...-...+..||..|.+ ..++..|
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIa---L~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~A 375 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIG---LASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVA 375 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHH---HHHTTC-----------------CHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCchhHHHHHHH---HHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHH
Confidence 456677888999999998877632233333222 2223333321111111011112235667776654 5778888
Q ss_pred HHHHHHH
Q 012108 189 VDLFDEM 195 (471)
Q Consensus 189 ~~~~~~m 195 (471)
+++|--+
T Consensus 376 l~Y~~li 382 (661)
T 2qx5_A 376 VEYLVLI 382 (661)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 8877665
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.21 E-value=64 Score=26.04 Aligned_cols=68 Identities=3% Similarity=-0.109 Sum_probs=36.9
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC
Q 012108 339 RKLEHYGCMVDLLGRARLLDRAIELIEAMPFE-PTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYL 406 (471)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 406 (471)
.|+.....-+..--.+.++.+....+..-++. --...|......+-..|++++|..+|+..++.+-.|
T Consensus 115 nD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 115 DDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp TCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34444444443333344444444444333332 234556666666667777777777777777766553
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=54.27 E-value=58 Score=24.08 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 012108 357 LDRAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425 (471)
Q Consensus 357 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 425 (471)
.+.+.+.+++.+.+++..=. .++..+...+..-.|.++++.+.+.+|..+..|.+.-++.+...|-..
T Consensus 6 ~~~~~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34555666666655554322 234444456677789999999988888878888877777777777643
No 294
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=53.71 E-value=23 Score=25.57 Aligned_cols=16 Identities=6% Similarity=-0.261 Sum_probs=6.4
Q ss_pred ChhhHHHHHHHHHhcC
Q 012108 106 DVTSFNIMISGYARIG 121 (471)
Q Consensus 106 ~~~~~~~l~~~~~~~g 121 (471)
++..-...+.++.+.|
T Consensus 55 ~~~vR~~A~~aL~~~~ 70 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQ 70 (131)
T ss_dssp CHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 3333334444444444
No 295
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=53.70 E-value=1.1e+02 Score=26.38 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=41.6
Q ss_pred HHhCCCCCCH--hHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 364 IEAMPFEPTE--SILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 364 ~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
|...+++|.- .++..-+....+.+++..|..+.+++++.+|.+. ..++|.+++....+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHHhcC
Confidence 3344566643 3666777788899999999999999999988522 335567776666543
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.12 E-value=94 Score=31.79 Aligned_cols=105 Identities=13% Similarity=0.141 Sum_probs=66.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHhccc----c---------------------
Q 012108 113 MISGYARIGKIHSARYIFDKVPAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLV----K--------------------- 167 (471)
Q Consensus 113 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~--------------------- 167 (471)
++..|...|..+-+.++...+.. ++..--.+..+|...|++++|.+.|++.-. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~ 894 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 894 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCS
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccc
Confidence 55666667777766665544443 333333456677777777777777776510 0
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccC
Q 012108 168 -NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDY----LTVTSVLSACANLG 218 (471)
Q Consensus 168 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~ 218 (471)
...-|..++..+-+.+.++.+.++-+..++.--.-|. ..|..++++.+..|
T Consensus 895 ~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 895 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1125778889999999999999888887764222232 25666777666544
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.63 E-value=48 Score=27.09 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=19.2
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 012108 338 TRKLEHYGCMVDLLGRARLLDRAIELIEA 366 (471)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (471)
.+++......+..+.+.|+.++|.++|=+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34455556666777777888887777644
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.51 E-value=2.2e+02 Score=29.19 Aligned_cols=109 Identities=9% Similarity=0.010 Sum_probs=78.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------------CC
Q 012108 143 SLILAYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNV--------------------KP 202 (471)
Q Consensus 143 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--------------------~p 202 (471)
.++..+...|.++-|.++...+.. ++..--.+..+|...|++++|...|++.-. |+ ++
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~ 892 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 892 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTT
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCcccc
Confidence 367778889999988776655543 555445688899999999999999986531 21 11
Q ss_pred ---CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcC
Q 012108 203 ---DYLTVTSVLSACANLGSLETGARIHVYATDNGLASNP----HATTALIDMYAKCG 253 (471)
Q Consensus 203 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 253 (471)
...-|..++..+.+.+.++.+.++-+.+++.--+.|. ..+..+.++.+..|
T Consensus 893 ~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 893 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1246788999999999999999999988875323333 36677777776654
No 299
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=50.36 E-value=71 Score=25.56 Aligned_cols=142 Identities=11% Similarity=0.004 Sum_probs=68.1
Q ss_pred HHHHHhhccchhHHHHHHHHHHHhccCCchh--HHHHHHHHHhccCCHhHHHHHhcccCCC---CcccHHHHHHHHHcCC
Q 012108 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHVY--VQTALLKMYGSLRCIDDAFKVFEKMPEK---DIIAWNSMLDAFASCG 90 (471)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 90 (471)
.+...+..|+.+ +++.+++.|..++.. .-...+...+..|+.+-+..+++.-..+ +....+ .+...+..|
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST-CLHLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCC-HHHHHHHTT
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcC
Confidence 344555667765 444555556544321 1123445555678888877777664332 222222 333445667
Q ss_pred CHHHHHHHHhcCCC-C---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--hHHHHHHHHHhCCCHHHHHHHHHh
Q 012108 91 QMDHAMKLIDLMPL-K---DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV--SWNSLILAYTNAGEMEKAGEMFKK 163 (471)
Q Consensus 91 ~~~~A~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~ 163 (471)
+.+-+..+++.-.. . +..-. +.+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+-+.-+++.
T Consensus 89 ~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 166 (237)
T 3b7b_A 89 HYEVVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166 (237)
T ss_dssp CHHHHHHHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT
T ss_pred CHHHHHHHHhCCCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 77766666655421 1 11111 2233445566766666666654332211 011123333445555544444443
No 300
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.89 E-value=47 Score=25.23 Aligned_cols=64 Identities=8% Similarity=-0.049 Sum_probs=34.4
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHc--CCCCCchhHHHHHHHHHhcCCH
Q 012108 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAK--SNYLSDGELMMFANLYASCGQW 424 (471)
Q Consensus 360 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 424 (471)
+.+.+++.+.+++..= ..++..+...++.-.|.++++.+.+. +|..+..|...-++.+...|-.
T Consensus 20 ~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 20 FKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3334444444443321 22344444555666677777777666 6665666666666666666543
No 301
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=48.51 E-value=1.2e+02 Score=25.22 Aligned_cols=22 Identities=18% Similarity=-0.055 Sum_probs=9.8
Q ss_pred HHHHhhcCCchHHHHHHHHHHHc
Q 012108 380 LSACVIHQDLEIGDRVAKMVCAK 402 (471)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~ 402 (471)
+.++.+.|+ ..+...+..+.+.
T Consensus 242 ~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 242 IEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp HHHHHHHCC-GGGHHHHHHHHTT
T ss_pred HHHHHhcCc-hhhhHHHHHHHhc
Confidence 334444444 2444455554443
No 302
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=47.96 E-value=93 Score=23.94 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=45.0
Q ss_pred HhcCCHHHHHHHHhhcCCCChhhHHHHHH-HHHhCCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012108 118 ARIGKIHSARYIFDKVPAKDVVSWNSLIL-AYTNAGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVVDLFDEMK 196 (471)
Q Consensus 118 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 196 (471)
.+-.+++.+.-+-.-+.+..+ -|..|+. .+.-.|.+.+++-++.....-...-|..| +|-+.+++..|+..++.++
T Consensus 13 ~kY~dYdt~~fLsa~L~~~~~-eY~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 13 IRYRDYETAIFLAACLLPCKP-EYRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp HHTTCHHHHHHHHHHHC-----CTHHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHccCCh-HHHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 344455555443333332222 3333332 34567788888777766544444444443 4667888888888888887
Q ss_pred hCCCC
Q 012108 197 AGNVK 201 (471)
Q Consensus 197 ~~g~~ 201 (471)
+..+.
T Consensus 90 ~~kvd 94 (242)
T 3kae_A 90 EGKVE 94 (242)
T ss_dssp TTCSB
T ss_pred hcccc
Confidence 65443
No 303
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.37 E-value=18 Score=26.95 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=38.4
Q ss_pred cccCCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCC
Q 012108 2 QELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRC 60 (471)
Q Consensus 2 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 60 (471)
++.|++++..- ..+++.+...+ .-.|.++++.+.+.++..+..|--.-+..+...|-
T Consensus 11 ~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 11 RQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 45677766543 34555666666 67888999988888766666665556677776664
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.28 E-value=81 Score=23.46 Aligned_cols=66 Identities=9% Similarity=-0.008 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 012108 359 RAIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425 (471)
Q Consensus 359 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 425 (471)
.+.+.+++.+.+++..= ..++..+...+..-.|.++++.+.+.+|..+..|.+.-+..+...|-..
T Consensus 13 ~~~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 13 RLRMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 44555666555544332 2344455556677889999999988888877777777777777766543
No 305
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=47.02 E-value=37 Score=23.11 Aligned_cols=38 Identities=3% Similarity=0.024 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHHHH
Q 012108 152 GEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIEVV 189 (471)
Q Consensus 152 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 189 (471)
...++|.++++.++.+++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677777777777777777777777776656655443
No 306
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=46.72 E-value=1.4e+02 Score=25.59 Aligned_cols=279 Identities=10% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHH---HHHHHHhccCCHhHHHHHhcccCCCCccc--HHHHHHHHHc
Q 012108 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQT---ALLKMYGSLRCIDDAFKVFEKMPEKDIIA--WNSMLDAFAS 88 (471)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~ 88 (471)
++.|-..++.|+++ +.+.+++.|..++...-. +-+...+..|+.+-+.-+++.-..++... ....+.....
T Consensus 26 ~t~L~~Av~~g~~~----~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 26 NHLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHTTCHH----HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ChHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Q ss_pred CCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHH------------HHHHHHHhCCCH
Q 012108 89 CGQMDHAMKLIDLMPLK--DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN------------SLILAYTNAGEM 154 (471)
Q Consensus 89 ~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~ 154 (471)
.+.......+....... ....-.+.+...+..|..+-+..+++.-..++..... +.+...+..|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Q ss_pred HHHHHHHHhc---cccChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHH
Q 012108 155 EKAGEMFKKM---LVKNVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVT--SVLSACANLGSLETGARIHVY 229 (471)
Q Consensus 155 ~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~ 229 (471)
+-+..++++. +..-...-...+......+.......+.+-+.+.|..++..... +.+...+..|+.+.+..+++.
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 012108 230 ATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAALKLLGEMNDSCVKAD 304 (471)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 304 (471)
-...--..|..-.+.|..+ ++.|+.+-+.-+++....++... .+...++.|+.+ +.+-+++.|-.||
T Consensus 262 ~~~~vn~~d~~G~TpL~~A-~~~g~~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 262 EHIEINDTDSDGKTALLLA-VELKLKKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp TTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred cCCcccCcCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
No 307
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=44.96 E-value=47 Score=22.26 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhccccChHHHHHHHHHHHhcCCHHH
Q 012108 151 AGEMEKAGEMFKKMLVKNVITWNTMVTGYLRSQLYIE 187 (471)
Q Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (471)
....++|.++++.+...+..+|..++.++...+...-
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 4556667777777766677777777777666665433
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=43.69 E-value=25 Score=26.82 Aligned_cols=37 Identities=11% Similarity=-0.019 Sum_probs=20.2
Q ss_pred HHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccC
Q 012108 35 QTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMP 72 (471)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 72 (471)
.+.+.|+..+. --..++..+...++.-.|.++++.+.
T Consensus 23 ~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~ 59 (162)
T 4ets_A 23 ILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIK 59 (162)
T ss_dssp HHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHH
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 34455655543 23445555555556666666666553
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=43.42 E-value=33 Score=23.36 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=14.7
Q ss_pred CHhHHHHHhcccCCCCcccHHHHHHHHHcCCC
Q 012108 60 CIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91 (471)
Q Consensus 60 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 91 (471)
+.+.|.++++.+....+.+|..++.++...|+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 34444444444444444444444444443343
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.30 E-value=1e+02 Score=24.47 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=5.8
Q ss_pred ccCCHhHHHHHhc
Q 012108 57 SLRCIDDAFKVFE 69 (471)
Q Consensus 57 ~~g~~~~A~~~~~ 69 (471)
+.|+.+....+++
T Consensus 18 ~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 18 QYGIYERCRELVE 30 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 3444444444444
No 311
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.96 E-value=1.8e+02 Score=25.55 Aligned_cols=213 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHHHHHHHHHcCCCHH
Q 012108 14 PLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQMD 93 (471)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 93 (471)
..+|.-|...|+.++|.+.++++......+.......-...=.+...-+.+-.++..+. .+..+-..+..+ +.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~g------f~ 130 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKS------FD 130 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHH------HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHH------HH
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhc-----------------CCHHHHHHHHhhc-----------------------
Q 012108 94 HAMKLIDLMPLKDVTSFNIMISGYARI-----------------GKIHSARYIFDKV----------------------- 133 (471)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~l~~~~~~~-----------------g~~~~a~~~~~~~----------------------- 133 (471)
..++.++.+.-.-+.++..+....++. -.-..+.++++..
T Consensus 131 ~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~ 210 (358)
T 3eiq_C 131 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 210 (358)
T ss_dssp HHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSS
T ss_pred HHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCC
Q ss_pred --CCCChhhHHHHHHHHHhCCCHHHHHHHHHhcccc---ChHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHH
Q 012108 134 --PAKDVVSWNSLILAYTNAGEMEKAGEMFKKMLVK---NVITWNTMVTGYLRSQ--LYIEVVDLFDEMKAGNVKPDYLT 206 (471)
Q Consensus 134 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~ 206 (471)
.+.=......++.=|...|+.++|.+.++++..| .......+..++-+.+ ..+...+++..+...|+-+....
T Consensus 211 ~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 211 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_pred HHHHHHHHHccCChHH----HHHHHHHHHHc
Q 012108 207 VTSVLSACANLGSLET----GARIHVYATDN 233 (471)
Q Consensus 207 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 233 (471)
...+.+.+....+..- |..++..+...
T Consensus 291 ~~Gf~~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 291 KRGYERIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHhhcccccHHHHHHHHHHH
No 312
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.70 E-value=43 Score=24.60 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 012108 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424 (471)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 424 (471)
.++..+...++.-.|.++++.+.+.+|..+..|...-+..+...|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45556666667788999999998888887777777777777777654
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.63 E-value=1.1e+02 Score=22.92 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhccccC---hHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 012108 141 WNSLILAYTNAGEMEKAGEMFKKMLVKN---VITWNTMVTGYLRSQL--YIEVVDLFDEMKAGNVKPD 203 (471)
Q Consensus 141 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 203 (471)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3456677777788888888888875542 2233334444444322 3456677777766665433
No 314
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.31 E-value=47 Score=24.05 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 012108 378 ALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424 (471)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 424 (471)
.++..+...+..-.|.++++.+.+.+|..+..|....++.+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555556667788999999998888887777777777777776654
No 315
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=40.16 E-value=1.1e+02 Score=22.37 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=53.1
Q ss_pred HHHHHhhccchhHHHHHHHHHHHhcc-CCchhHHHHHHHHHhccCCHhHHHHHhcccCCC---CcccHHHHHHHHHcCCC
Q 012108 16 LLKAAGILSSSCIGLMLHGQTIKTGF-CGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEK---DIIAWNSMLDAFASCGQ 91 (471)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 91 (471)
.+...+..|+.+.+..+++. ....+ ..+..- .+.+.. +..|+.+-+..+++.-..+ +..-++.+ ...+..|+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g-~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~ 80 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFG-KTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPV-HDAARTGF 80 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTS-CCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCC-CcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCc
Confidence 34445566777777777665 21111 112222 223344 6667777777777654332 22223333 33345566
Q ss_pred HHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhh
Q 012108 92 MDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDK 132 (471)
Q Consensus 92 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 132 (471)
.+-+.-+++.-... |.... +.+...+..|+.+-+..+++.
T Consensus 81 ~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 81 LDTLKVLVEHGADVNVPDGTGA-LPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCcCCCCC-cHHHHHHHhChHHHHHHHHhc
Confidence 66555555543222 22111 223333455666666555555
No 316
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.78 E-value=1.6e+02 Score=25.54 Aligned_cols=140 Identities=9% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcccc---ChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 012108 142 NSLILAYTNAGEMEKAGEMFKKMLVK---NVITWNTMVTGYLR-SQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217 (471)
Q Consensus 142 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 217 (471)
..++.=|...|+.++|.+.++++..| ...+...+..++-+ ....+.+..++..+.+.|+-+.......+-+.+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred CC--------hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 012108 218 GS--------LETGARIHVYATDNGLASNPHATTALIDMYAKCGSIEQSLEVFYKSQVKDVFCWNAMILGLALHGYGYAA 289 (471)
Q Consensus 218 ~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 289 (471)
.+ +.....+...+...|..|-...+..+...+...|........ .+..+.+....+.+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~--------------vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLE--------------ILGLLCKSMGPKKV 160 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHH--------------HHHHHHHHHCHHHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHH--------------HHHHHHHHcCHHHH
Q ss_pred HHHHHH
Q 012108 290 LKLLGE 295 (471)
Q Consensus 290 ~~~~~~ 295 (471)
.++|.+
T Consensus 161 ~~~~~~ 166 (339)
T 1ug3_A 161 GTLWRE 166 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 317
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=39.29 E-value=1e+02 Score=21.93 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=30.1
Q ss_pred HhcccCCCCcccHHHHHHHHHcCCCHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 012108 67 VFEKMPEKDIIAWNSMLDAFASCGQMDHAMKLIDLMPLKDVTSFNIMISGYARIGKIH 124 (471)
Q Consensus 67 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 124 (471)
+.+.+.+++...-...+.++.+.|+.+..-.+.+.+..++..+-...+.++.+.|+.+
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~ 104 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGER 104 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH
Confidence 3333344555555556666666665433333333333445556666666666666543
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.98 E-value=1e+02 Score=22.73 Aligned_cols=59 Identities=7% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 012108 296 MNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356 (471)
Q Consensus 296 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (471)
+.+.|++++..-. .++..+...+..-.|.++++.+.+ .+...+..|.-.-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCC
Confidence 4455655554322 233333334444556666666655 2333444444444455555544
No 319
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.58 E-value=68 Score=29.85 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCCh--hH-HHHHHHHHhhcCCHHHHHHHHHhC
Q 012108 305 DITFIGLLSACSHAGLVQEGCELFSRMEKDF-GVTRKL--EH-YGCMVDLLGRARLLDRAIELIEAM 367 (471)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~ 367 (471)
...++.+++.|...+.++.|..+..+..- . ...++. .. +-.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45678888999999999999999888753 1 001121 11 223455667788999998888765
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.09 E-value=1.5e+02 Score=23.46 Aligned_cols=49 Identities=16% Similarity=-0.047 Sum_probs=25.2
Q ss_pred HhhccchhHHHHHHHHHHHhccCCchh--HHHHHHHHHhccCCHhHHHHHhcccC
Q 012108 20 AGILSSSCIGLMLHGQTIKTGFCGHVY--VQTALLKMYGSLRCIDDAFKVFEKMP 72 (471)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 72 (471)
.+..|+++....+ ++.|..++.. .-...+...+..|+.+-+..+++.-.
T Consensus 16 A~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 16 ATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 4456666544444 4455433221 12234555566677777776666544
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.82 E-value=51 Score=23.87 Aligned_cols=58 Identities=14% Similarity=0.016 Sum_probs=40.6
Q ss_pred ccCCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCH
Q 012108 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61 (471)
Q Consensus 3 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 61 (471)
+.|++++.. =..++..+...+..-.|.++++.+.+.++..+..|-...+..+...|-+
T Consensus 4 ~~g~r~T~q-R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 4 AAGVRSTRQ-RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp TTHHHHHHH-HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred hccCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 344443332 2346667766777889999999999887777777777777888877743
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.42 E-value=2.4e+02 Score=25.79 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=17.4
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 012108 232 DNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (471)
+.|++--...|..-.+.+...|++++|.++--.
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344444444455555555666666666655443
No 323
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.87 E-value=48 Score=24.33 Aligned_cols=58 Identities=10% Similarity=-0.081 Sum_probs=40.5
Q ss_pred ccCCCCCcccHHHHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCH
Q 012108 3 ELGVHADNYSFPLLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61 (471)
Q Consensus 3 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 61 (471)
+.|++++.. =..+++.+...+..-.|.++++.+.+.++..+..|--.-+..+...|-+
T Consensus 7 ~~g~r~T~q-R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 7 PVKGRATRQ-RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp ---CHHHHH-HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCCccCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445554433 3456777777777888999999999888777777766677888877744
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.39 E-value=1.6e+02 Score=23.27 Aligned_cols=63 Identities=8% Similarity=0.151 Sum_probs=39.2
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCCC
Q 012108 174 TMVTGY---LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS-----LETGARIHVYATDNGLAS 237 (471)
Q Consensus 174 ~l~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 237 (471)
.+|+++ .+..+++.|+-++-+|++.| .|....--.++.+....|. ...|...++.....|.+-
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 345554 44688999999999999998 6665555555555554443 223445555556666433
No 325
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.94 E-value=1.6e+02 Score=23.27 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 012108 183 QLYIEVVDLFDEMKAGNVKPD-YLTVTSVLSACANLGSLETGARIHVYATDNGLAS 237 (471)
Q Consensus 183 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (471)
++..++..+|..|...||--. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666555433 2334455555566666666666666666665555
No 326
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.70 E-value=63 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=16.2
Q ss_pred CCHhHHHHHhcccCCCCcccHHHHHHHHHcCCC
Q 012108 59 RCIDDAFKVFEKMPEKDIIAWNSMLDAFASCGQ 91 (471)
Q Consensus 59 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 91 (471)
...+.|..+++.+...+..+|..++.++.+.+.
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 444455555555544444455555555444443
No 327
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.56 E-value=2.4e+02 Score=25.16 Aligned_cols=304 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcccCCCCcccHH--HHHHHHHcCCCH
Q 012108 15 LLLKAAGILSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEKMPEKDIIAWN--SMLDAFASCGQM 92 (471)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~g~~ 92 (471)
+.|...+..|+.+-+..+++. ...+..........+...+..|+.+-+..+++.-...+..... ..+...++.|+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred CHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_pred HHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHH--HHHHHHHhCCCHHHHHHHHHhcccc-
Q 012108 93 DHAMKLIDLMPLK--DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVVSWN--SLILAYTNAGEMEKAGEMFKKMLVK- 167 (471)
Q Consensus 93 ~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~- 167 (471)
+-+.-+++.-..+ ....-.+.+...+..|+.+-+..+++.-...+..... +.+...+..|+.+-+.-+++.-..+
T Consensus 94 ~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 173 (437)
T 1n11_A 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173 (437)
T ss_dssp HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Q ss_pred --ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHH
Q 012108 168 --NVITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTV--TSVLSACANLGSLETGARIHVYATDNGLASNPHATT 243 (471)
Q Consensus 168 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 243 (471)
+..-.+.+..+..... .++++.+.+.|..++...+ ...+...+..|+.+-+..+++. ...+......-.
T Consensus 174 ~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~ 246 (437)
T 1n11_A 174 AAGKNGLTPLHVAVHHNN-----LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY--GGSANAESVQGV 246 (437)
T ss_dssp CCCSSCCCHHHHHHHTTC-----HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCC
T ss_pred CCCCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCC
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 012108 244 ALIDMYAKCGSIEQSLEVFYKSQVKDV--FCWNAMILGLALHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGLV 321 (471)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 321 (471)
+.+...+..|+.+-+.-+++.....+. ..-...+...++.|..+-+..+++. ...+......-.+.+...+..|+.
T Consensus 247 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~ 324 (437)
T 1n11_A 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGNI 324 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CccCCCCCCCCCCHHHHHHHcCcH
Q ss_pred HHHHHHHH
Q 012108 322 QEGCELFS 329 (471)
Q Consensus 322 ~~a~~~~~ 329 (471)
+-+.-+++
T Consensus 325 ~~v~~Ll~ 332 (437)
T 1n11_A 325 KLVKFLLQ 332 (437)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
No 328
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.04 E-value=1.5e+02 Score=22.51 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHhC--C-CCC--CHhHHHHHHH-H-----HhhcCCchHHHHHHHHH
Q 012108 355 RLLDRAIELIEAM--P-FEP--TESILGALLS-A-----CVIHQDLEIGDRVAKMV 399 (471)
Q Consensus 355 g~~~~A~~~~~~~--~-~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~ 399 (471)
|++-+|-+++++. . -.| ....|..||. . ..+.|+...|.+++++.
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6666666666555 1 122 2334444544 1 12345555555555443
No 329
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.01 E-value=66 Score=19.45 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccc
Q 012108 394 RVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMMNDTGIVKT 442 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 442 (471)
+-++.+.+.-|..+..+....+. ...|+.+.|+..+-.|...+..|+
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHH--HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 33444444566655544444333 356788888888888876655554
No 330
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.72 E-value=62 Score=23.58 Aligned_cols=63 Identities=8% Similarity=0.016 Sum_probs=39.5
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHhhcC-CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 012108 362 ELIEAMPFEPTESILGALLSACVIHQ-DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWE 425 (471)
Q Consensus 362 ~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 425 (471)
+.+++.+.+++..=. .++..+...+ ..-.|.++++.+.+.+|..+..|...-++.+...|-..
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345555544443322 2344444555 67788888988888888777777777777777766543
No 331
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.50 E-value=1.3e+02 Score=21.70 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhccccCh---HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 012108 141 WNSLILAYTNAGEMEKAGEMFKKMLVKNV---ITWNTMVTGYLRSQL--YIEVVDLFDEMKAGNVKPD 203 (471)
Q Consensus 141 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 203 (471)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+.+++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34567777778888888888888755521 233334444444332 3556677777776665443
No 332
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.17 E-value=1.7e+02 Score=23.02 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 012108 174 TMVTGY---LRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLG 218 (471)
Q Consensus 174 ~l~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 218 (471)
.+|+++ .+..+++.|+-++-+|++.|-.|....--.++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345554 446889999999999999887666555555555554433
No 333
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.99 E-value=1.6e+02 Score=25.56 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=10.6
Q ss_pred HHHHhccCCHhHHHHHhcccC
Q 012108 52 LKMYGSLRCIDDAFKVFEKMP 72 (471)
Q Consensus 52 ~~~~~~~g~~~~A~~~~~~~~ 72 (471)
+...+..|+.+-+..+++.-.
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~ 77 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGE 77 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHCCC
Confidence 333444566655555555433
No 334
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=33.54 E-value=3.4e+02 Score=26.29 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC-HhHHHHHHHHHhhcC---------------C-chHHHHHHHHHHHc-----CCC-C
Q 012108 350 LLGRARLLDRAIELIEAMPFEPT-ESILGALLSACVIHQ---------------D-LEIGDRVAKMVCAK-----SNY-L 406 (471)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g---------------~-~~~a~~~~~~~~~~-----~~~-~ 406 (471)
-+...|++++|..+|+-.+.... ..+.+.++.-....- + ...|.++.+..... ... .
T Consensus 452 ~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 531 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVK 531 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHH
T ss_pred HHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHH
Confidence 45678999999999998872222 234444444332211 1 12344443332211 111 0
Q ss_pred CchhHHHHHH---H--HHhcCCHHHHHHHHHHh
Q 012108 407 SDGELMMFAN---L--YASCGQWEEANRWRNMM 434 (471)
Q Consensus 407 ~~~~~~~l~~---~--~~~~g~~~~A~~~~~~m 434 (471)
+..++..|.+ . +...|+|+.|.+.++++
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 2344554443 3 36889999999888876
No 335
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.52 E-value=1.4e+02 Score=22.06 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=28.2
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 012108 295 EMNDSCVKADDITFIGLLSACSHAGLVQEGCELFSRMEKDFGVTRKLEHYGCMVDLLGRARL 356 (471)
Q Consensus 295 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (471)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 34555655544322 2333344444455566666666652 333444444444555555554
No 336
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.54 E-value=2e+02 Score=22.94 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=41.4
Q ss_pred HHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCC
Q 012108 171 TWNTMVTGYL---RSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGS-----LETGARIHVYATDNGLA 236 (471)
Q Consensus 171 ~~~~l~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 236 (471)
.+..+|+++. +..+++.|+-++-+|++.|-.|....--.++.+....|. ...|...++.....|.+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3344555554 468899999999999999877766555555555544443 23344555555556643
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.26 E-value=72 Score=23.76 Aligned_cols=43 Identities=7% Similarity=0.008 Sum_probs=25.0
Q ss_pred HHhhcC-CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 012108 382 ACVIHQ-DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424 (471)
Q Consensus 382 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 424 (471)
.+...+ ..-.|.++++.+.+.+|..+..|.+.-+..+...|-.
T Consensus 25 ~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 25 VLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 333444 5556777777776666665666655555555555543
No 338
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.79 E-value=1.8e+02 Score=22.23 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=8.6
Q ss_pred hccCCHhHHHHHhccc
Q 012108 56 GSLRCIDDAFKVFEKM 71 (471)
Q Consensus 56 ~~~g~~~~A~~~~~~~ 71 (471)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 3455666655555543
No 339
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.76 E-value=2e+02 Score=24.60 Aligned_cols=92 Identities=9% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcccc---ChHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 012108 142 NSLILAYTNAGEMEKAGEMFKKMLVK---NVITWNTMVTGYLRSQLY--IEVVDLFDEMKAGNVKPDYLTVTSVLSACAN 216 (471)
Q Consensus 142 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 216 (471)
..++.-|...|+.++|.+.++++..| .......+..++-+.++. +.+.+++..+.+.|+-+.......+.+.+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~~ 249 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNE 249 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh
Q ss_pred cC----ChHHHHHHHHHHHHc
Q 012108 217 LG----SLETGARIHVYATDN 233 (471)
Q Consensus 217 ~~----~~~~a~~~~~~~~~~ 233 (471)
.. +...|..++..+...
T Consensus 250 l~Dl~lDiP~A~~~la~~v~~ 270 (307)
T 2zu6_B 250 IPDINLDVPHSYSVLERFVEE 270 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHH
T ss_pred ccHhhcccccHHHHHHHHHHH
No 340
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.59 E-value=1.3e+02 Score=24.08 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCC----CCCCH-hHHH-----HHHHHHhhcCCchHHHHHHHHHHHc
Q 012108 357 LDRAIELIEAMP----FEPTE-SILG-----ALLSACVIHQDLEIGDRVAKMVCAK 402 (471)
Q Consensus 357 ~~~A~~~~~~~~----~~p~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (471)
++.|+.+|+.++ +.... .... ..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 677888887762 11111 1111 2234577788888888888877664
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.54 E-value=69 Score=23.69 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 012108 360 AIELIEAMPFEPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQW 424 (471)
Q Consensus 360 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 424 (471)
..+.+++.+.+++..=. .++..+...+ .-.|.++++.+.+.+|..+..|...-++.+...|-.
T Consensus 6 ~~~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34556666655554321 2333344445 678888888888888877777777777777777654
No 342
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.33 E-value=66 Score=23.45 Aligned_cols=59 Identities=7% Similarity=-0.014 Sum_probs=38.4
Q ss_pred cccCCCCCcccHHHHHHHHhhcc-chhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCH
Q 012108 2 QELGVHADNYSFPLLLKAAGILS-SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61 (471)
Q Consensus 2 ~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 61 (471)
++.|++++..- ..++..+...+ ..-.|.++++.+.+.++..+..|-..-+..+...|-+
T Consensus 10 ~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 10 RKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45666665543 34556666555 6777888998888887666666666666777766643
No 343
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=29.18 E-value=1.7e+02 Score=27.18 Aligned_cols=46 Identities=9% Similarity=-0.073 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHh
Q 012108 388 DLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQWEEANRWRNMM 434 (471)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (471)
.++.|...+.++....|. +...|+.|+-.....|+.-+|.-.|-+.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp CHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 345566666666666666 5566666665555555555554444433
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.78 E-value=77 Score=23.61 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=40.1
Q ss_pred cccCCCCCcccHHHHHHHHhhcc-chhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCH
Q 012108 2 QELGVHADNYSFPLLLKAAGILS-SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCI 61 (471)
Q Consensus 2 ~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 61 (471)
++.|++++..- ..++..+...+ ..-.|.++++.+.+.++..+..|-..-+..+...|-+
T Consensus 9 ~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 9 KDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45666666543 34566666665 6778899999988887666776666667777777744
No 345
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.77 E-value=1.5e+02 Score=23.99 Aligned_cols=54 Identities=7% Similarity=-0.346 Sum_probs=34.5
Q ss_pred HHHHHhhccchhHHHHHHHHHHHhccCCch-------hHHHHHHHHHhcc---CCHhHHHHHhcc
Q 012108 16 LLKAAGILSSSCIGLMLHGQTIKTGFCGHV-------YVQTALLKMYGSL---RCIDDAFKVFEK 70 (471)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---g~~~~A~~~~~~ 70 (471)
.|...+..|+.+....+++.+.+.|..++. .-.+ .+...+.. |+.+-+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhc
Confidence 345566779999888888888888765443 2223 33334444 777777766664
No 346
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.97 E-value=2e+02 Score=21.91 Aligned_cols=16 Identities=13% Similarity=-0.035 Sum_probs=7.7
Q ss_pred HhccCCHhHHHHHhcc
Q 012108 55 YGSLRCIDDAFKVFEK 70 (471)
Q Consensus 55 ~~~~g~~~~A~~~~~~ 70 (471)
.+..|+.+-+..+++.
T Consensus 46 A~~~~~~~~v~~Ll~~ 61 (201)
T 3hra_A 46 AVHNNDIEIAKALIDR 61 (201)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3344555555555444
No 347
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.58 E-value=1.2e+02 Score=19.33 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=39.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012108 194 EMKAGNVKPDYLTVTSVLSACANLG-SLETGARIHVYATDNGLASNPHATTALIDMYAKCGSI 255 (471)
Q Consensus 194 ~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 255 (471)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 45667777665543 3445555543 4566778888887776666777777677777766643
No 348
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.38 E-value=2.5e+02 Score=22.48 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhHHhcCCCCCh-hHH-----HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh
Q 012108 321 VQEGCELFSRMEKDFGVTRKL-EHY-----GCMVDLLGRARLLDRAIELIEAM-PFEPTES 374 (471)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 374 (471)
.+.|+.+|+.+.++..++.+. ... -..+..|.+.|.+++|.+++++. +..|+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCch
Confidence 677888888888754332221 111 12344577889999999998887 4333443
No 349
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.03 E-value=3.9e+02 Score=24.54 Aligned_cols=111 Identities=12% Similarity=-0.004 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHhccccC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 012108 152 GEMEKAGEMFKKMLVKN-VITWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANLGSLETGARIHVYA 230 (471)
Q Consensus 152 ~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (471)
.+.+-|.++-.+.--|. ...|..-...+...|++++|.++-....+ |+--+..|.+.+-..-...|+..-...+|..+
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~L 421 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGIL 421 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 55555666555553332 22344445566667777777766544332 34445555554444444455555666666666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 012108 231 TDNGLASNPHATTALIDMYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (471)
.+.| ..+..---.+++.-...|+.+-..+.+.+
T Consensus 422 l~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 422 LDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 6665 44443334455555555555555555543
No 350
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=25.73 E-value=1.1e+02 Score=18.30 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHH
Q 012108 25 SSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAF 65 (471)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 65 (471)
.-++|..|-+.+...+ .....+-...+..+.++|++++|.
T Consensus 21 cH~EA~tIA~~L~~~~-~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 21 CHQEAASIADWLAQEE-CMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp CHHHHHHHHHHHHTSS-TTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHccchHhHhh
Confidence 4566777777666554 222333334445556677777664
No 351
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.49 E-value=2.3e+02 Score=21.43 Aligned_cols=53 Identities=9% Similarity=-0.071 Sum_probs=36.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH-HH-----hccCcHHHHHHHHHHhHH
Q 012108 281 ALHGYGYAALKLLGEMNDSCVKA--DDITFIGLLS-AC-----SHAGLVQEGCELFSRMEK 333 (471)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~~-----~~~~~~~~a~~~~~~~~~ 333 (471)
...|++-+|-++|+..-.....+ ....+..||+ .. .+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888888888887654444 4455666666 22 356888888888888766
No 352
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.23 E-value=2.1e+02 Score=24.75 Aligned_cols=79 Identities=8% Similarity=-0.125 Sum_probs=36.3
Q ss_pred HHhhcCCHHHHHHHHHhCCC-------CCCHhHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHH--HHHHHHHh
Q 012108 350 LLGRARLLDRAIELIEAMPF-------EPTESILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELM--MFANLYAS 420 (471)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 420 (471)
..+..|+.+-+..+++.-.. ..+..-.+.|. ..+..|+.+ +.+.+++.|.+++..... +-+..-.+
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 253 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSVR 253 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 34566777777777764311 11111122222 233555544 344444555543322111 22233345
Q ss_pred cCCHHHHHHHHHH
Q 012108 421 CGQWEEANRWRNM 433 (471)
Q Consensus 421 ~g~~~~A~~~~~~ 433 (471)
.|+.+-+.-+++.
T Consensus 254 ~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 254 AAMVLLTKELLQK 266 (364)
T ss_dssp TCCHHHHHHHHHH
T ss_pred hChHHHHHHHHHc
Confidence 5777766666654
No 353
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.29 E-value=1.4e+02 Score=18.49 Aligned_cols=48 Identities=8% Similarity=-0.099 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDGELMMFANLYASCGQ 423 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (471)
.++.++..++...-.++++-.+.++.+.|.- +...|..-.+.+++..-
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaReQF 51 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELARQQF 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence 4566777777777788899999999998877 78888877777666533
No 354
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.96 E-value=1.2e+02 Score=17.54 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=26.5
Q ss_pred ccchhHHHHHHHHHHHhccCCchhHHHHHHHHHhccCCHhHHHHHhcc
Q 012108 23 LSSSCIGLMLHGQTIKTGFCGHVYVQTALLKMYGSLRCIDDAFKVFEK 70 (471)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 70 (471)
..|+..|.++++.+.+.|--|+... .+| .--.+..-....+++|+.
T Consensus 6 ~RDv~RaiELle~lq~sgevp~~KL-~aL-q~VLqSdF~~aVREVYEh 51 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKTGEVNNAKL-ASL-QQVLQSEFFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHHHHHGGGSSSTHHHH-HHH-HHHHSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHH-HHH-HHHHHHHHHHHHHHHHHH
Confidence 3577889999999998886555432 222 222233334444555543
No 355
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.93 E-value=2.8e+02 Score=21.78 Aligned_cols=180 Identities=8% Similarity=-0.060 Sum_probs=0.0
Q ss_pred HHHHHcCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-------hHHHHHHHHHhCC
Q 012108 83 LDAFASCGQMDHAMKLIDLMPLK---DVTSFNIMISGYARIGKIHSARYIFDKVPAKDVV-------SWNSLILAYTNAG 152 (471)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~ 152 (471)
+...++.|+.+....+++.-... ....-.+.+...+..|+.+-+..+++.-...... .-.+.+...+..|
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 86 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC
Q ss_pred CHHHHHHHHHhccccChH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 012108 153 EMEKAGEMFKKMLVKNVI---------------TWNTMVTGYLRSQLYIEVVDLFDEMKAGNVKPDYLTVTSVLSACANL 217 (471)
Q Consensus 153 ~~~~A~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 217 (471)
+.+-+.-+++.-..++.. .-.+.+...+..|+.+-+.-+++. ...+......-.+.+...+..
T Consensus 87 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~ 164 (232)
T 2rfa_A 87 NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH--GADIRAQDSLGNTVLHILILQ 164 (232)
T ss_dssp CHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHTC
T ss_pred CHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHc
Q ss_pred CChHHHHHHHHHHHHcCCCCc--------hhHHHHHHHHHHhcCChHHHHHHHhc
Q 012108 218 GSLETGARIHVYATDNGLASN--------PHATTALIDMYAKCGSIEQSLEVFYK 264 (471)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (471)
|+.+.+..+++.+.+.|..++ ...-.+-+...++.|+.+-+.-+++.
T Consensus 165 ~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 165 PNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp SCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
No 356
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.86 E-value=2.9e+02 Score=21.69 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=7.3
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 012108 181 RSQLYIEVVDLFDEMKAG 198 (471)
Q Consensus 181 ~~~~~~~a~~~~~~m~~~ 198 (471)
..|+.+.+..+++.+.+.
T Consensus 18 ~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 344444444444433333
No 357
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.30 E-value=2.1e+02 Score=23.06 Aligned_cols=54 Identities=15% Similarity=-0.237 Sum_probs=33.9
Q ss_pred HHHHhhccchhHHHHHHHHHHHhccCCchhH-------HHHHHHHHh--ccCCHhHHHHHhcc
Q 012108 17 LKAAGILSSSCIGLMLHGQTIKTGFCGHVYV-------QTALLKMYG--SLRCIDDAFKVFEK 70 (471)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~ 70 (471)
+...+..|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3445567999998889998888776655332 233322221 56777777766664
No 358
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.36 E-value=3.2e+02 Score=21.56 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHhHHhcCCC
Q 012108 275 AMILGLA---LHGYGYAALKLLGEMNDSCVKADDITFIGLLSACSHAGL-----VQEGCELFSRMEKDFGVT 338 (471)
Q Consensus 275 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 338 (471)
-+|+++. +..+++.|+-.+.+|.+.| .|....-..++.+.-.-|. ...|...++.... .|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~-iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEK-LGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-hCCC
Confidence 3455554 4678899999999999988 6665555556666555554 2334444555544 4554
No 359
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.16 E-value=89 Score=18.93 Aligned_cols=33 Identities=3% Similarity=-0.106 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHHHH-hcc
Q 012108 26 SCIGLMLHGQTIKTGFCGHVYVQTALLKMY-GSL 58 (471)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 58 (471)
.++|...|-+|++..--++..+|...++.. ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 357777787777654444556777777777 444
No 360
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.15 E-value=3.5e+02 Score=24.74 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCch--------h-HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 012108 375 ILGALLSACVIHQDLEIGDRVAKMVCAKSNYLSDG--------E-LMMFANLYASCGQWEEANRWRNMMNDT 437 (471)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~-~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (471)
..+.+...|.+.++...+..+++.+...++-|+.. + ...+++.+...+++.+|.+.+....+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 34566677777777777777777766655422222 2 225677777788888887777666543
Done!