BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012109
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 148/319 (46%), Gaps = 47/319 (14%)
Query: 157 QVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 216
++V D L VK+AF L G+ APLWD K FVG+L+ +DFI IL + S L
Sbjct: 46 KLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY--YKSALV 103
Query: 217 E-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 275
+ ELE H I W+E YL DS +PLV PN +L D ++ N++ +P
Sbjct: 104 QIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLFDAVSSLIRNKIHRLP 153
Query: 276 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 335
+I S + L+I + ILK LKL I P ++ K E
Sbjct: 154 VIDPESGNT-----LYILTHKRILK--------------FLKLFITEFPKPEFMSKSLEE 194
Query: 336 ----NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAY 391
+AM+R ++P+VD+ ++DIY + D+ LA +K Y
Sbjct: 195 LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY 254
Query: 392 AHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA 451
++++S + +ALQ + + C +TL ++ RL V RLV+V+
Sbjct: 255 NNLDVS---VTKALQHRSHYF-------EGVLKCYLHETLEAIINRLVEAEVHRLVVVDE 304
Query: 452 GSKRVEGIVSLSDIFKFLL 470
V+GIVSLSDI + L+
Sbjct: 305 HD-VVKGIVSLSDILQALV 322
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 82.4 bits (202), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P F W GG+ V+LSGSFN WS+L P+ F I +P G HQYKF VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNF 112
HD +P ++S+ G VN ++ + +F
Sbjct: 68 HDPSEPIVTSQLGTVNNIIQVKKTDF 93
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 81.6 bits (200), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P F W GG+ V+LSGSFN WS+L P F I +P G HQYKF VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSKL----PXTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNF 112
HD +P ++S+ G VN ++ + +F
Sbjct: 68 HDPSEPIVTSQLGTVNNIIQVKKTDF 93
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 138/315 (43%), Gaps = 32/315 (10%)
Query: 156 LQVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 215
+++ D+ L VK + +L I APLWD +F G+L+ +DF+ +++ S
Sbjct: 31 FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSF- 89
Query: 216 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 275
I+ + + R+++ A P +Y P +L D + + +P
Sbjct: 90 ------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIP 143
Query: 276 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 335
+I + GS ++ + + ILK + +C + +L++P+ + +GTW
Sbjct: 144 LIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRVPLNQMTIGTW------- 191
Query: 336 NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 395
LA ++PIV+ +LL++Y D+ L +D Y++++
Sbjct: 192 --SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLD 249
Query: 396 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 455
LS + +AL ++ C +D L + + + + V RL +V+ K
Sbjct: 250 LS---VGEALLKRPANFDG-------VHTCRATDRLDGIFDAIKHSRVHRLFVVDENLK- 298
Query: 456 VEGIVSLSDIFKFLL 470
+EGI+SL+DI +++
Sbjct: 299 LEGILSLADILNYII 313
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 138/315 (43%), Gaps = 32/315 (10%)
Query: 156 LQVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 215
+++ D+ L VK + +L I APLWD +F G+L+ +DF+ +++ S
Sbjct: 32 FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSF- 90
Query: 216 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 275
I+ + + R+++ A P +Y P +L D + + +P
Sbjct: 91 ------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIP 144
Query: 276 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 335
+I + GS ++ + + ILK + +C + +L++P+ + +GTW
Sbjct: 145 LIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRVPLNQMTIGTW------- 192
Query: 336 NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 395
LA ++PIV+ +LL++Y D+ L +D Y++++
Sbjct: 193 --SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLD 250
Query: 396 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 455
LS + +AL ++ C +D L + + + + V RL +V+ K
Sbjct: 251 LS---VGEALLKRPANFDG-------VHTCRATDRLDGIFDAIKHSRVHRLFVVDENLK- 299
Query: 456 VEGIVSLSDIFKFLL 470
+EGI+SL+DI +++
Sbjct: 300 LEGILSLADILNYII 314
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 144/318 (45%), Gaps = 43/318 (13%)
Query: 157 QVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 216
+++ LD L VK++ ++L + I APLWD +RF G+L+ +DFI +++ + SN
Sbjct: 41 RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQY---YFSNPD 97
Query: 217 EEEL-ETHTISAWKEGKAYLN-RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATV 274
+ EL + + K+ + L Q+D+ RPL A K+L + +
Sbjct: 98 KFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEA---------CLKMLESRSGRI 148
Query: 275 PIIHSSSQDGSFPQLLHIASLSG--ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKI 332
P+I QD + + ++ L+ ILK V R LK+PI + + I
Sbjct: 149 PLI---DQDEETHREIVVSVLTQYRILKFVALNCRETH----FLKIPIGDLNI------I 195
Query: 333 GEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYA 392
+ N + M P S+PI+D+N L+++Y D+ L K Y
Sbjct: 196 TQDNMKSCQMTTP---VIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 252
Query: 393 HINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 452
++LS + +AL D + + C +D L +M+ + V R +V+
Sbjct: 253 DLSLS---VGEALMRRSDDF-------EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-D 301
Query: 453 SKRVEGIVSLSDIFKFLL 470
R+ G+++LSDI K++L
Sbjct: 302 VGRLVGVLTLSDILKYIL 319
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 144/318 (45%), Gaps = 43/318 (13%)
Query: 157 QVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 216
+++ LD L VK++ ++L + I APLWD +RF G+L+ +DFI +++ + SN
Sbjct: 34 RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQY---YFSNPD 90
Query: 217 EEEL-ETHTISAWKEGKAYLN-RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATV 274
+ EL + + K+ + L Q+D+ RPL A K+L + +
Sbjct: 91 KFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEA---------CLKMLESRSGRI 141
Query: 275 PIIHSSSQDGSFPQLLHIASLSG--ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKI 332
P+I QD + + ++ L+ ILK V R LK+PI + + I
Sbjct: 142 PLI---DQDEETHREIVVSVLTQYRILKFVALNCRETH----FLKIPIGDLNI------I 188
Query: 333 GEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYA 392
+ N + M P S+PI+D+N L+++Y D+ L K Y
Sbjct: 189 TQDNMKSCQMTTP---VIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 245
Query: 393 HINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 452
++LS + +AL D + + C +D L +M+ + V R +V+
Sbjct: 246 DLSLS---VGEALMRRSDDF-------EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-D 294
Query: 453 SKRVEGIVSLSDIFKFLL 470
R+ G+++LSDI K++L
Sbjct: 295 VGRLVGVLTLSDILKYIL 312
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P W GG+ VF+SGSFN WS +P+ F I +P G HQYKF VDG+W
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSH---NDFVAILDLPEGEHQYKFFVDGQWV 67
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNF 112
HD +P ++S+ G +N ++ + +F
Sbjct: 68 HDPSEPVVTSQLGTINNLIHVKKSDF 93
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 11/108 (10%)
Query: 363 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 422
++P+VD+ ++DIY + D+ LA +K Y ++++S + +ALQ + Y L+
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQ-HRSHYFEGVLK---- 105
Query: 423 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470
C +TL ++ RL V RLV+V+ + V+GIVSLSDI + L+
Sbjct: 106 --CYLHETLETIINRLVEAEVHRLVVVDE-NDVVKGIVSLSDILQALV 150
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 11/108 (10%)
Query: 363 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 422
++P+VD+ ++DIY + D+ LA +K Y ++++S + +ALQ + Y L+
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQ-HRSHYFEGVLK---- 105
Query: 423 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470
C +TL ++ RL V +LV+V+ + V+GIVSLSDI + L+
Sbjct: 106 --CYLHETLETIINRLVEAEVHQLVVVDE-NDVVKGIVSLSDILQALV 150
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 23 TVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
++++P+ W GG V+++GSF +W +++ + P F + + PG H+++F VD
Sbjct: 1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 83 GEWRHDEHQPFISSEYG 99
E R + P + + G
Sbjct: 61 NELRVSDFLPTATDQMG 77
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 11/108 (10%)
Query: 363 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 422
++P+VD+ ++DIY + D+ LA +K Y ++++S + +ALQ + Y L+
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQ-HRSHYFEGVLK---- 105
Query: 423 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470
C +TL ++ RL V LV+V+ + V+GIVSLSDI + L+
Sbjct: 106 --CYLHETLETIINRLVEAEVHGLVVVDE-NDVVKGIVSLSDILQALV 150
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 363 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 422
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D + +
Sbjct: 44 SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF-------EGV 93
Query: 423 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470
C +D L +M+ + V R +V+ R+ G+++LSDI K++L
Sbjct: 94 YTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 140
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 363 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 422
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D + +
Sbjct: 44 SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALXRRSDDF-------EGV 93
Query: 423 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470
C +D L + + + V R +V+ R+ G+++LSDI K++L
Sbjct: 94 YTCTKNDKLSTIXDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 140
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 35 GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQII-WSIPPGYHQYKFCVDGEWRHDEHQPF 93
G V +SG W + +P++ +G T F I+ +P G +YK+ +DGEW H+E +PF
Sbjct: 180 GFSRVEISGLDIGWGQRIPLTLGKG--TGFWILKRELPEGQFEYKYIIDGEWTHNEAEPF 237
Query: 94 I--SSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQI 139
I + + N + +P + G + S + ++ E +L+Q
Sbjct: 238 IGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQF 285
>pdb|3HFQ|A Chain A, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118.
pdb|3HFQ|B Chain B, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118
Length = 347
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 4/144 (2%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P V+ G+ FL+G + L G T I+ +IP Y +
Sbjct: 189 PRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGS---NMDVD-NEAFQRLVQISDG 142
HD H ++S+ V T + I Q G + D+D EAF +V +
Sbjct: 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308
Query: 143 SLTEAAERISEADLQVVALDIDLP 166
+ T A ++ L ++ D+ +P
Sbjct: 309 NATLYARDLTSGKLSLLQKDVTVP 332
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 167 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 226
V +A +L E I+ P+ D + VG++S D +L L + GS TE + S
Sbjct: 26 VDEALELLVENRITGFPVID-EDWKLVGLVSDYD-LLALDSI--SGSGRTENSMFPEVDS 81
Query: 227 AWKEGKAYLNRQIDSHGKAF-----PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 281
WK A ++GK P PLV NL+D A+ +L + +P++ S
Sbjct: 82 TWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVE-EKTNLEDAAKILLETKYRRLPVVDS-- 138
Query: 282 QDGSFPQLLHIASLSGILKCVCRYFR 307
DG +L+ I + +++ + R
Sbjct: 139 -DG---KLVGIITRGNVVRAALQIKR 160
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 167 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 226
V A +L E+ ++ P+ D VGV+S D +L L + N + L S
Sbjct: 25 VDDALELLVEKKVTGLPVID-DNWTLVGVVSDYD-LLALDSISGRSQN--DTNLFPDVDS 80
Query: 227 AWKEGKAYLNRQIDSHGKAF-----PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 281
WK ++GK P PLV NL+D AR +L + +P++ +
Sbjct: 81 TWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDST-NLEDAARLLLETKFRRLPVVDA-- 137
Query: 282 QDGSFPQLLHIASLSGILKCVCRYFRHCSS 311
DG +L+ I + +++ + R+ S
Sbjct: 138 -DG---KLIGILTRGNVVRAALQIKRNADS 163
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471
++++ P+ T+ K + + RRL +V AG+ +V GI++ DI F+ G
Sbjct: 10 QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGG 63
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 167 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 226
+K + G P+ S+ R VG+++++DFI +L GS+ ++T +
Sbjct: 167 LKDVARTMVRNGFRRLPV--VSEGRLVGIITSTDFIKLL------GSDWAFNHMQTGNV- 217
Query: 227 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSF 286
+ N +++ + R ++ A D LK +A ++ N++ +P++ + +
Sbjct: 218 -----REITNVRME---EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLR---- 265
Query: 287 PQLLHIASLSGIL--KCVCRYF 306
+ GI+ K V +YF
Sbjct: 266 --------IKGIITEKDVLKYF 279
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 236 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 277
N ID + R ++ A P + LKDVAR ++ N +P++
Sbjct: 147 NEVIDDY---ITRDVIVATPGERLKDVARTMVRNGFRRLPVV 185
>pdb|2AMY|A Chain A, X-Ray Structure Of Human Phosphomannomutase 2 (Pmm2)
pdb|2Q4R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Phosphomannomutase 2 (Pmm2)
Length = 246
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 193 VGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSH-GKAFPRPLV 251
+GV+ SDF + +LGN + + + A+K+GK + I SH G+A + L+
Sbjct: 41 IGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLI 100
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 GSFNRWSELLPMSPVEGC-PTVFQIIWSIPPGYHQYKFCVDGEWR 86
G+ N WS + ++ P ++Q+ ++P G +QYK +D W
Sbjct: 177 GAANNWSPDDDHTLLKKINPNLYQLSGTLPAGTYQYKIALDHSWN 221
>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt
Efflux Protein From Bordetella Parapertussis In Complex
With Amp
pdb|3JTF|B Chain B, The Cbs Domain Pair Structure Of A Magnesium And Cobalt
Efflux Protein From Bordetella Parapertussis In Complex
With Amp
Length = 129
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 161 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFI-------LILRELGNHGS 213
LDI P+ Q + E S P+++ + +G+L A D + L +R L
Sbjct: 20 LDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYXLEPALDIRSLVRPAV 79
Query: 214 NLTEEELETHTISAWKEGKAYLNRQIDSHG 243
+ E + + ++ + +L ID HG
Sbjct: 80 FIPEVKRLNVLLREFRASRNHLAIVIDEHG 109
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 102 NTVLLATEPNFM-HGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAA--ERISEADLQV 158
NT+ E F+ GI G P+ + D +AF+ + +I +L + E++ +A +V
Sbjct: 345 NTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERV 404
Query: 159 VALDIDLPVKQ 169
L + P+ Q
Sbjct: 405 AKLTAEYPLYQ 415
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,023,784
Number of Sequences: 62578
Number of extensions: 577342
Number of successful extensions: 1258
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 27
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)