Query 012109
Match_columns 471
No_of_seqs 535 out of 4217
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 23:08:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 1.1E-26 2.4E-31 229.9 23.8 281 157-470 77-359 (381)
2 cd02859 AMPKbeta_GBD_like AMP- 99.9 2E-25 4.4E-30 171.4 10.2 79 25-106 1-79 (79)
3 cd02861 E_set_proteins_like E 99.8 1.1E-18 2.5E-23 135.5 9.8 77 26-105 2-81 (82)
4 COG2524 Predicted transcriptio 99.8 9.3E-18 2E-22 150.7 13.3 120 331-471 173-292 (294)
5 KOG1616 Protein involved in Sn 99.7 4.5E-17 9.7E-22 155.3 10.0 90 22-111 76-165 (289)
6 COG2524 Predicted transcriptio 99.7 6.7E-16 1.5E-20 138.9 11.8 121 239-387 171-291 (294)
7 COG3448 CBS-domain-containing 99.7 4.5E-16 9.8E-21 142.3 10.6 127 331-470 246-372 (382)
8 COG3448 CBS-domain-containing 99.6 6.2E-15 1.3E-19 134.9 14.1 173 192-388 200-373 (382)
9 cd04641 CBS_pair_28 The CBS do 99.6 2E-14 4.4E-19 120.4 15.1 119 339-468 2-120 (120)
10 COG3620 Predicted transcriptio 99.6 1.3E-14 2.8E-19 121.1 12.9 117 334-471 69-185 (187)
11 cd04603 CBS_pair_KefB_assoc Th 99.6 3.1E-14 6.6E-19 117.6 12.8 110 339-468 2-111 (111)
12 cd04618 CBS_pair_5 The CBS dom 99.6 2.9E-14 6.4E-19 115.0 11.5 95 339-468 2-98 (98)
13 cd04619 CBS_pair_6 The CBS dom 99.6 1.1E-13 2.5E-18 114.7 14.5 112 339-467 2-113 (114)
14 cd04617 CBS_pair_4 The CBS dom 99.5 1.8E-13 3.9E-18 114.3 14.7 113 339-467 2-117 (118)
15 PRK10892 D-arabinose 5-phospha 99.5 1.4E-13 3E-18 136.1 14.2 119 331-468 203-323 (326)
16 cd04593 CBS_pair_EriC_assoc_ba 99.5 3.8E-13 8.3E-18 111.6 14.6 112 339-468 2-115 (115)
17 cd04608 CBS_pair_PALP_assoc Th 99.5 1.2E-13 2.6E-18 116.5 11.7 113 339-469 3-124 (124)
18 cd04630 CBS_pair_17 The CBS do 99.5 4.9E-13 1.1E-17 110.8 15.0 112 339-468 2-114 (114)
19 cd04600 CBS_pair_HPP_assoc Thi 99.5 3.9E-13 8.5E-18 113.0 14.0 117 338-468 2-124 (124)
20 cd04801 CBS_pair_M50_like This 99.5 3.2E-13 7E-18 111.8 12.6 111 339-467 2-113 (114)
21 KOG1764 5'-AMP-activated prote 99.5 1.1E-12 2.3E-17 130.5 17.8 196 158-388 164-360 (381)
22 cd04605 CBS_pair_MET2_assoc Th 99.5 1.3E-12 2.8E-17 107.4 15.0 108 338-467 2-109 (110)
23 PRK14869 putative manganese-de 99.5 1E-13 2.2E-18 146.4 10.6 282 146-467 65-390 (546)
24 cd04614 CBS_pair_1 The CBS dom 99.5 6.2E-13 1.4E-17 106.8 12.7 95 339-468 2-96 (96)
25 cd04623 CBS_pair_10 The CBS do 99.5 1.3E-12 2.8E-17 107.7 15.0 112 339-468 2-113 (113)
26 TIGR00400 mgtE Mg2+ transporte 99.5 3.9E-13 8.5E-18 137.9 14.3 213 192-467 86-303 (449)
27 COG3620 Predicted transcriptio 99.5 2.5E-13 5.5E-18 113.4 9.9 119 242-388 67-185 (187)
28 cd04615 CBS_pair_2 The CBS dom 99.5 1.3E-12 2.8E-17 107.9 14.2 111 339-467 2-112 (113)
29 cd04642 CBS_pair_29 The CBS do 99.5 8.2E-13 1.8E-17 111.6 13.3 124 339-467 2-125 (126)
30 cd04639 CBS_pair_26 The CBS do 99.5 1.1E-12 2.3E-17 108.0 13.6 109 339-467 2-110 (111)
31 cd04607 CBS_pair_NTP_transfera 99.5 1.5E-12 3.3E-17 107.6 14.6 110 339-467 3-112 (113)
32 cd04803 CBS_pair_15 The CBS do 99.5 1.5E-12 3.2E-17 109.1 14.2 116 339-468 2-122 (122)
33 PRK15094 magnesium/cobalt effl 99.5 7.5E-13 1.6E-17 127.8 14.0 117 334-471 71-190 (292)
34 PRK11543 gutQ D-arabinose 5-ph 99.5 6.4E-13 1.4E-17 131.1 13.9 119 331-468 198-318 (321)
35 cd04631 CBS_pair_18 The CBS do 99.5 1.2E-12 2.6E-17 110.2 13.6 116 339-468 2-125 (125)
36 cd04621 CBS_pair_8 The CBS dom 99.5 1.6E-12 3.5E-17 111.4 14.5 115 339-468 2-135 (135)
37 cd04627 CBS_pair_14 The CBS do 99.5 1.1E-12 2.4E-17 110.3 13.2 119 339-466 2-121 (123)
38 cd04618 CBS_pair_5 The CBS dom 99.5 3.7E-13 8E-18 108.6 9.8 96 157-300 2-97 (98)
39 cd04596 CBS_pair_DRTGG_assoc T 99.5 1.2E-12 2.6E-17 107.3 12.9 105 339-467 3-107 (108)
40 cd04613 CBS_pair_SpoIVFB_EriC_ 99.5 1.8E-12 3.9E-17 107.0 13.9 111 339-467 2-113 (114)
41 cd04641 CBS_pair_28 The CBS do 99.5 1.4E-12 3.1E-17 109.1 13.3 119 248-384 1-119 (120)
42 cd04643 CBS_pair_30 The CBS do 99.5 2E-12 4.3E-17 107.2 14.1 114 339-468 2-116 (116)
43 cd04588 CBS_pair_CAP-ED_DUF294 99.5 2.7E-12 5.9E-17 105.4 14.7 108 339-467 2-109 (110)
44 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 2.5E-12 5.5E-17 105.2 14.4 106 339-467 3-108 (109)
45 cd04624 CBS_pair_11 The CBS do 99.5 2.7E-12 5.8E-17 105.8 14.6 110 339-467 2-111 (112)
46 cd04636 CBS_pair_23 The CBS do 99.4 1.9E-12 4.1E-17 110.3 14.0 115 339-468 2-132 (132)
47 cd04629 CBS_pair_16 The CBS do 99.4 1.6E-12 3.5E-17 107.5 13.1 113 339-468 2-114 (114)
48 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 2E-12 4.4E-17 105.4 13.5 104 339-467 2-105 (106)
49 cd04626 CBS_pair_13 The CBS do 99.4 2.7E-12 5.9E-17 105.6 14.4 109 339-467 2-110 (111)
50 cd04632 CBS_pair_19 The CBS do 99.4 2.4E-12 5.2E-17 109.0 14.3 117 339-468 2-128 (128)
51 cd04595 CBS_pair_DHH_polyA_Pol 99.4 3.4E-12 7.4E-17 104.9 14.9 107 339-467 3-109 (110)
52 cd04635 CBS_pair_22 The CBS do 99.4 1.7E-12 3.7E-17 108.7 13.2 116 339-468 2-122 (122)
53 PRK14869 putative manganese-de 99.4 3.3E-12 7.1E-17 135.0 18.2 195 243-468 71-302 (546)
54 cd04589 CBS_pair_CAP-ED_DUF294 99.4 3.9E-12 8.5E-17 104.7 14.9 110 339-468 2-111 (111)
55 cd04590 CBS_pair_CorC_HlyC_ass 99.4 3.8E-12 8.2E-17 104.7 14.6 108 339-467 2-110 (111)
56 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 3.1E-12 6.7E-17 105.6 13.9 111 339-467 3-113 (114)
57 COG2905 Predicted signal-trans 99.4 7.1E-13 1.5E-17 132.1 11.6 119 331-469 150-269 (610)
58 cd04620 CBS_pair_7 The CBS dom 99.4 3.2E-12 7E-17 105.9 13.8 111 339-468 2-115 (115)
59 cd04586 CBS_pair_BON_assoc Thi 99.4 1.8E-12 4E-17 110.9 12.5 115 339-468 3-135 (135)
60 cd04800 CBS_pair_CAP-ED_DUF294 99.4 5.8E-12 1.3E-16 103.6 14.8 109 339-467 2-110 (111)
61 PRK07807 inosine 5-monophospha 99.4 2.2E-12 4.7E-17 132.0 14.4 112 334-469 93-204 (479)
62 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 5E-12 1.1E-16 103.9 14.0 109 339-467 2-110 (111)
63 PRK05567 inosine 5'-monophosph 99.4 8.3E-12 1.8E-16 129.2 18.7 174 244-468 91-265 (486)
64 cd04640 CBS_pair_27 The CBS do 99.4 2.5E-12 5.4E-17 108.7 12.2 112 339-467 2-125 (126)
65 cd04587 CBS_pair_CAP-ED_DUF294 99.4 4.2E-12 9.2E-17 104.7 13.2 111 339-467 2-112 (113)
66 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 7.1E-12 1.5E-16 102.9 14.3 109 339-467 2-110 (111)
67 TIGR03520 GldE gliding motilit 99.4 3.2E-12 6.9E-17 129.3 14.6 117 332-471 193-312 (408)
68 cd04603 CBS_pair_KefB_assoc Th 99.4 3.9E-12 8.5E-17 104.9 12.6 108 250-384 3-110 (111)
69 cd04619 CBS_pair_6 The CBS dom 99.4 5E-12 1.1E-16 104.8 13.1 111 250-384 3-113 (114)
70 cd04633 CBS_pair_20 The CBS do 99.4 4.6E-12 1E-16 105.9 13.0 114 339-468 2-121 (121)
71 cd04625 CBS_pair_12 The CBS do 99.4 1.1E-11 2.3E-16 102.2 14.9 111 339-468 2-112 (112)
72 cd04622 CBS_pair_9 The CBS dom 99.4 8.6E-12 1.9E-16 102.9 14.0 111 339-468 2-113 (113)
73 cd04585 CBS_pair_ACT_assoc2 Th 99.4 7.4E-12 1.6E-16 104.6 13.5 114 339-467 2-121 (122)
74 cd04602 CBS_pair_IMPDH_2 This 99.4 7.4E-12 1.6E-16 103.7 13.1 106 339-467 3-113 (114)
75 cd04606 CBS_pair_Mg_transporte 99.4 5.7E-12 1.2E-16 103.4 11.6 103 343-469 2-109 (109)
76 cd04627 CBS_pair_14 The CBS do 99.4 1E-11 2.2E-16 104.3 13.4 120 249-383 2-121 (123)
77 PRK01862 putative voltage-gate 99.4 5E-12 1.1E-16 134.2 14.0 123 331-470 448-571 (574)
78 cd04609 CBS_pair_PALP_assoc2 T 99.4 1.5E-11 3.2E-16 100.8 13.8 109 339-468 2-110 (110)
79 cd04601 CBS_pair_IMPDH This cd 99.4 7.2E-12 1.6E-16 102.7 11.7 106 339-467 3-109 (110)
80 cd04802 CBS_pair_3 The CBS dom 99.4 2.5E-11 5.5E-16 99.9 14.8 110 339-467 2-111 (112)
81 cd04617 CBS_pair_4 The CBS dom 99.4 9.4E-12 2E-16 103.8 12.2 111 249-384 2-117 (118)
82 cd04630 CBS_pair_17 The CBS do 99.4 1.2E-11 2.6E-16 102.4 12.7 112 249-384 2-113 (114)
83 cd04599 CBS_pair_GGDEF_assoc2 99.4 1.6E-11 3.5E-16 99.8 13.3 103 339-467 2-104 (105)
84 PRK07807 inosine 5-monophospha 99.4 3.6E-11 7.8E-16 123.1 18.7 159 244-455 93-251 (479)
85 cd04637 CBS_pair_24 The CBS do 99.4 1.5E-11 3.3E-16 103.0 13.4 115 339-468 2-122 (122)
86 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.3E-11 2.8E-16 103.7 12.7 122 248-384 2-123 (124)
87 cd04584 CBS_pair_ACT_assoc Thi 99.3 2.5E-11 5.3E-16 101.4 14.2 115 339-468 2-121 (121)
88 cd04610 CBS_pair_ParBc_assoc T 99.3 1.8E-11 3.8E-16 99.9 12.5 104 339-467 3-106 (107)
89 cd02205 CBS_pair The CBS domai 99.3 3.8E-11 8.3E-16 98.1 14.5 111 339-467 2-112 (113)
90 cd04605 CBS_pair_MET2_assoc Th 99.3 3.5E-11 7.6E-16 98.7 13.9 108 248-384 2-109 (110)
91 cd04594 CBS_pair_EriC_assoc_ar 99.3 2.6E-11 5.6E-16 98.7 12.8 100 341-467 4-103 (104)
92 cd04607 CBS_pair_NTP_transfera 99.3 3E-11 6.5E-16 99.8 13.4 109 250-384 4-112 (113)
93 cd04614 CBS_pair_1 The CBS dom 99.3 2.5E-11 5.5E-16 97.4 12.5 94 249-384 2-95 (96)
94 TIGR01302 IMP_dehydrog inosine 99.3 1.7E-11 3.8E-16 125.6 14.5 112 335-469 85-200 (450)
95 PLN02274 inosine-5'-monophosph 99.3 2.1E-11 4.5E-16 125.7 15.0 113 336-469 106-221 (505)
96 PRK07107 inosine 5-monophospha 99.3 1.2E-11 2.7E-16 127.1 13.0 109 340-468 107-218 (502)
97 cd02858 Esterase_N_term Estera 99.3 1.1E-11 2.3E-16 96.8 9.6 74 27-103 7-82 (85)
98 cd04624 CBS_pair_11 The CBS do 99.3 4.1E-11 8.8E-16 98.7 13.5 110 249-384 2-111 (112)
99 cd04623 CBS_pair_10 The CBS do 99.3 3.6E-11 7.8E-16 99.0 13.2 111 249-384 2-112 (113)
100 COG0517 FOG: CBS domain [Gener 99.3 6.6E-11 1.4E-15 98.1 14.7 111 336-466 5-117 (117)
101 cd04639 CBS_pair_26 The CBS do 99.3 3.2E-11 6.9E-16 99.2 12.3 109 249-384 2-110 (111)
102 PRK05567 inosine 5'-monophosph 99.3 2.5E-11 5.4E-16 125.7 14.3 114 333-469 90-204 (486)
103 cd04591 CBS_pair_EriC_assoc_eu 99.3 3.9E-11 8.5E-16 98.0 12.5 100 339-468 3-105 (105)
104 PRK11543 gutQ D-arabinose 5-ph 99.3 1.9E-11 4.2E-16 120.6 12.5 117 243-385 200-318 (321)
105 cd04593 CBS_pair_EriC_assoc_ba 99.3 5.1E-11 1.1E-15 98.7 13.0 111 249-384 2-114 (115)
106 cd04634 CBS_pair_21 The CBS do 99.3 6.5E-11 1.4E-15 102.4 14.1 126 339-467 2-142 (143)
107 COG4109 Predicted transcriptio 99.3 1.6E-11 3.5E-16 115.5 10.6 116 331-470 189-306 (432)
108 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 6.9E-11 1.5E-15 96.2 13.2 104 249-384 2-105 (106)
109 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 3.2E-11 6.9E-16 123.3 13.7 110 335-469 93-202 (475)
110 cd04643 CBS_pair_30 The CBS do 99.3 3.8E-11 8.3E-16 99.5 11.9 114 249-384 2-115 (116)
111 PRK15094 magnesium/cobalt effl 99.3 1.4E-10 3.1E-15 111.9 17.4 125 238-389 65-191 (292)
112 cd04642 CBS_pair_29 The CBS do 99.3 6E-11 1.3E-15 100.1 13.0 124 249-384 2-125 (126)
113 cd04608 CBS_pair_PALP_assoc Th 99.3 1.7E-11 3.7E-16 103.3 9.6 113 248-385 2-123 (124)
114 cd04598 CBS_pair_GGDEF_assoc T 99.3 6.6E-11 1.4E-15 98.6 13.0 113 339-467 2-118 (119)
115 cd04801 CBS_pair_M50_like This 99.3 4.3E-11 9.4E-16 99.0 11.8 109 249-384 2-113 (114)
116 cd04631 CBS_pair_18 The CBS do 99.3 5E-11 1.1E-15 100.2 12.2 119 249-384 2-124 (125)
117 PRK10892 D-arabinose 5-phospha 99.3 3.3E-11 7.1E-16 119.2 12.5 117 243-385 205-323 (326)
118 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 2.1E-10 4.6E-15 117.3 18.7 112 245-388 93-204 (475)
119 cd04803 CBS_pair_15 The CBS do 99.3 6.5E-11 1.4E-15 99.1 12.5 120 249-384 2-121 (122)
120 TIGR00393 kpsF KpsF/GutQ famil 99.3 3.7E-11 8.1E-16 115.4 12.3 112 331-461 156-268 (268)
121 cd04626 CBS_pair_13 The CBS do 99.3 7.1E-11 1.5E-15 97.1 12.2 109 249-384 2-110 (111)
122 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 1.1E-10 2.4E-15 95.4 13.3 106 249-384 3-108 (109)
123 TIGR00400 mgtE Mg2+ transporte 99.3 4E-11 8.6E-16 123.2 13.0 115 332-470 133-252 (449)
124 cd04588 CBS_pair_CAP-ED_DUF294 99.3 1.2E-10 2.5E-15 95.6 13.4 108 249-384 2-109 (110)
125 cd04629 CBS_pair_16 The CBS do 99.3 5.2E-11 1.1E-15 98.3 11.3 112 249-384 2-113 (114)
126 cd04638 CBS_pair_25 The CBS do 99.3 1.5E-10 3.1E-15 94.4 13.7 104 339-467 2-105 (106)
127 cd04615 CBS_pair_2 The CBS dom 99.3 1E-10 2.2E-15 96.4 12.9 110 250-384 3-112 (113)
128 TIGR03520 GldE gliding motilit 99.3 2.1E-10 4.6E-15 116.1 17.7 160 238-440 189-350 (408)
129 PTZ00314 inosine-5'-monophosph 99.3 5.9E-11 1.3E-15 122.4 13.6 113 336-469 102-217 (495)
130 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1.3E-10 2.8E-15 95.4 13.0 108 248-384 2-109 (110)
131 cd04596 CBS_pair_DRTGG_assoc T 99.3 9E-11 2E-15 96.1 12.0 105 249-384 3-107 (108)
132 cd04620 CBS_pair_7 The CBS dom 99.3 1.3E-10 2.7E-15 96.2 13.0 110 249-384 2-114 (115)
133 cd04590 CBS_pair_CorC_HlyC_ass 99.3 1.2E-10 2.6E-15 95.6 12.8 108 249-384 2-110 (111)
134 cd04587 CBS_pair_CAP-ED_DUF294 99.2 1.4E-10 3E-15 95.6 12.9 111 249-384 2-112 (113)
135 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 1.2E-10 2.7E-15 96.0 12.6 111 249-384 3-113 (114)
136 cd04586 CBS_pair_BON_assoc Thi 99.2 5.8E-11 1.3E-15 101.5 10.9 129 248-384 2-134 (135)
137 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 1.6E-10 3.6E-15 94.7 13.2 109 249-384 2-110 (111)
138 cd04585 CBS_pair_ACT_assoc2 Th 99.2 1.4E-10 3.1E-15 96.7 13.1 120 249-384 2-121 (122)
139 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 1.2E-10 2.7E-15 95.9 12.4 111 249-384 2-113 (114)
140 cd04636 CBS_pair_23 The CBS do 99.2 9.4E-11 2E-15 99.8 12.0 127 249-384 2-131 (132)
141 cd04621 CBS_pair_8 The CBS dom 99.2 1.4E-10 3.1E-15 99.3 12.8 129 249-384 2-134 (135)
142 COG2239 MgtE Mg/Co/Ni transpor 99.2 1.1E-10 2.4E-15 117.5 13.5 160 195-388 90-254 (451)
143 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 2.2E-10 4.7E-15 94.0 13.1 109 249-384 2-110 (111)
144 cd04800 CBS_pair_CAP-ED_DUF294 99.2 1.7E-10 3.6E-15 94.8 12.3 109 249-384 2-110 (111)
145 TIGR01137 cysta_beta cystathio 99.2 1.5E-10 3.2E-15 119.8 14.7 117 332-469 337-453 (454)
146 cd04632 CBS_pair_19 The CBS do 99.2 1.7E-10 3.7E-15 97.5 12.3 118 249-384 2-127 (128)
147 COG2905 Predicted signal-trans 99.2 7.6E-11 1.6E-15 117.8 11.5 119 244-388 153-271 (610)
148 cd04625 CBS_pair_12 The CBS do 99.2 2.3E-10 5E-15 94.1 12.6 110 249-384 2-111 (112)
149 cd04602 CBS_pair_IMPDH_2 This 99.2 2.6E-10 5.7E-15 94.3 12.9 109 249-384 3-113 (114)
150 cd04622 CBS_pair_9 The CBS dom 99.2 2.8E-10 6.2E-15 93.7 13.0 110 249-384 2-112 (113)
151 cd04635 CBS_pair_22 The CBS do 99.2 1.6E-10 3.4E-15 96.7 11.4 118 249-384 2-121 (122)
152 COG0517 FOG: CBS domain [Gener 99.2 3.3E-10 7.2E-15 93.9 13.2 112 245-383 4-117 (117)
153 cd04637 CBS_pair_24 The CBS do 99.2 2.1E-10 4.6E-15 96.0 12.1 120 249-384 2-121 (122)
154 cd04589 CBS_pair_CAP-ED_DUF294 99.2 3.2E-10 6.9E-15 93.2 12.9 109 249-384 2-110 (111)
155 cd04640 CBS_pair_27 The CBS do 99.2 2.2E-10 4.8E-15 96.7 11.7 116 249-384 2-125 (126)
156 cd04633 CBS_pair_20 The CBS do 99.2 2.2E-10 4.7E-15 95.7 11.5 119 249-384 2-120 (121)
157 cd04802 CBS_pair_3 The CBS dom 99.2 5.3E-10 1.1E-14 92.0 13.2 110 249-384 2-111 (112)
158 PRK11573 hypothetical protein; 99.2 5.2E-10 1.1E-14 113.3 15.6 121 332-471 189-312 (413)
159 PRK07107 inosine 5-monophospha 99.2 5.2E-10 1.1E-14 115.3 15.7 111 250-386 107-219 (502)
160 cd04592 CBS_pair_EriC_assoc_eu 99.2 4.4E-10 9.6E-15 95.9 12.0 109 339-451 2-117 (133)
161 cd04601 CBS_pair_IMPDH This cd 99.1 4.3E-10 9.3E-15 92.1 11.3 107 248-384 2-109 (110)
162 PLN02274 inosine-5'-monophosph 99.1 5.1E-10 1.1E-14 115.5 14.3 116 246-388 106-223 (505)
163 cd04609 CBS_pair_PALP_assoc2 T 99.1 4.9E-10 1.1E-14 91.6 11.5 108 249-384 2-109 (110)
164 TIGR01302 IMP_dehydrog inosine 99.1 9.5E-10 2.1E-14 112.8 15.9 115 245-386 85-200 (450)
165 cd04610 CBS_pair_ParBc_assoc T 99.1 9.6E-10 2.1E-14 89.5 12.8 105 248-384 2-106 (107)
166 cd04606 CBS_pair_Mg_transporte 99.1 7.3E-10 1.6E-14 90.8 12.0 102 253-385 2-108 (109)
167 cd04599 CBS_pair_GGDEF_assoc2 99.1 7.2E-10 1.6E-14 90.0 11.6 102 249-383 2-103 (105)
168 cd02205 CBS_pair The CBS domai 99.1 1.4E-09 3.1E-14 88.6 13.5 111 249-384 2-112 (113)
169 cd04594 CBS_pair_EriC_assoc_ar 99.1 9.2E-10 2E-14 89.5 11.5 100 251-384 4-103 (104)
170 cd04584 CBS_pair_ACT_assoc Thi 99.1 1.2E-09 2.6E-14 91.1 12.2 117 249-384 2-120 (121)
171 PRK01862 putative voltage-gate 99.1 6.1E-10 1.3E-14 118.4 12.9 120 243-387 450-571 (574)
172 TIGR00393 kpsF KpsF/GutQ famil 99.1 5.6E-10 1.2E-14 107.3 11.5 110 243-378 158-268 (268)
173 cd04591 CBS_pair_EriC_assoc_eu 99.1 1.4E-09 3E-14 88.7 11.7 100 249-384 3-104 (105)
174 PTZ00314 inosine-5'-monophosph 99.1 1.2E-09 2.6E-14 112.8 13.4 115 245-386 101-217 (495)
175 cd04634 CBS_pair_21 The CBS do 99.1 1.9E-09 4.1E-14 93.2 12.3 126 249-384 2-142 (143)
176 cd04598 CBS_pair_GGDEF_assoc T 99.0 2.6E-09 5.6E-14 88.8 11.4 113 249-384 2-118 (119)
177 COG4109 Predicted transcriptio 99.0 1.6E-09 3.4E-14 102.3 10.9 113 245-388 193-307 (432)
178 COG1253 TlyC Hemolysins and re 99.0 5.5E-09 1.2E-13 106.8 14.1 113 338-471 216-329 (429)
179 COG2239 MgtE Mg/Co/Ni transpor 99.0 4.3E-09 9.4E-14 106.1 11.2 115 331-469 133-252 (451)
180 cd04638 CBS_pair_25 The CBS do 98.9 1.4E-08 3E-13 82.6 12.0 104 249-384 2-105 (106)
181 TIGR01137 cysta_beta cystathio 98.9 9.5E-09 2.1E-13 106.4 12.8 116 243-386 338-453 (454)
182 PF00571 CBS: CBS domain CBS d 98.9 3.1E-09 6.7E-14 76.2 5.8 54 417-471 4-57 (57)
183 cd04592 CBS_pair_EriC_assoc_eu 98.9 1.8E-08 3.8E-13 86.0 10.9 113 249-370 2-118 (133)
184 PF00571 CBS: CBS domain CBS d 98.9 5.5E-09 1.2E-13 74.9 5.9 54 334-387 3-56 (57)
185 TIGR01186 proV glycine betaine 98.8 1.5E-07 3.3E-12 93.6 17.8 108 339-470 251-358 (363)
186 PRK11573 hypothetical protein; 98.8 1.5E-07 3.2E-12 95.5 17.5 126 239-389 186-313 (413)
187 cd02688 E_set E or "early" set 98.8 2.1E-08 4.6E-13 77.7 8.2 71 27-99 5-77 (83)
188 COG4535 CorC Putative Mg2+ and 98.8 2.1E-08 4.5E-13 89.8 8.5 112 339-471 78-190 (293)
189 cd02854 Glycogen_branching_enz 98.7 5E-08 1.1E-12 78.1 8.7 65 27-93 6-84 (99)
190 PRK10070 glycine betaine trans 98.7 3.2E-07 6.8E-12 92.5 13.8 104 343-470 290-393 (400)
191 COG4536 CorB Putative Mg2+ and 98.7 1.6E-07 3.5E-12 89.9 10.8 121 332-471 202-325 (423)
192 COG1253 TlyC Hemolysins and re 98.6 1.4E-06 2.9E-11 89.3 15.8 125 238-389 204-330 (429)
193 PF02922 CBM_48: Carbohydrate- 98.5 7.7E-08 1.7E-12 75.2 4.0 57 27-84 12-73 (85)
194 KOG2550 IMP dehydrogenase/GMP 98.5 8.2E-07 1.8E-11 85.7 11.6 167 176-385 57-226 (503)
195 COG4535 CorC Putative Mg2+ and 98.4 4.9E-06 1.1E-10 74.8 12.5 116 247-389 76-191 (293)
196 KOG0474 Cl- channel CLC-7 and 98.4 4.6E-07 9.9E-12 91.8 6.5 137 331-468 583-745 (762)
197 KOG2550 IMP dehydrogenase/GMP 98.4 7.2E-07 1.6E-11 86.1 7.3 107 339-468 117-226 (503)
198 TIGR01186 proV glycine betaine 98.4 7.5E-06 1.6E-10 81.6 14.1 110 249-389 251-360 (363)
199 PRK10070 glycine betaine trans 98.2 1.9E-05 4.1E-10 79.7 13.2 106 253-389 290-395 (400)
200 COG4536 CorB Putative Mg2+ and 98.1 7E-05 1.5E-09 72.1 13.7 125 150-307 201-328 (423)
201 KOG0474 Cl- channel CLC-7 and 98.1 1E-05 2.2E-10 82.3 8.4 145 241-386 583-746 (762)
202 cd04597 CBS_pair_DRTGG_assoc2 97.9 2.7E-05 5.8E-10 64.2 5.9 53 332-384 60-112 (113)
203 cd02860 Pullulanase_N_term Pul 97.9 4.8E-05 1E-09 61.3 7.0 64 28-95 10-85 (100)
204 PF00686 CBM_20: Starch bindin 97.9 5.2E-05 1.1E-09 60.5 7.1 56 26-81 2-68 (96)
205 smart00116 CBS Domain in cysta 97.8 5.8E-05 1.3E-09 50.8 5.9 47 422-469 2-48 (49)
206 cd02855 Glycogen_branching_enz 97.8 0.00017 3.8E-09 58.5 9.7 67 28-95 23-96 (106)
207 cd04597 CBS_pair_DRTGG_assoc2 97.8 5.1E-05 1.1E-09 62.5 6.3 50 417-467 63-112 (113)
208 COG0296 GlgB 1,4-alpha-glucan 97.7 6.2E-05 1.3E-09 78.8 7.1 67 26-94 36-110 (628)
209 cd05808 CBM20_alpha_amylase Al 97.7 0.00016 3.5E-09 57.6 7.4 45 35-81 13-63 (95)
210 cd05814 CBM20_Prei4 Prei4, N-t 97.7 0.00027 5.9E-09 58.9 8.9 57 26-82 3-67 (120)
211 smart00116 CBS Domain in cysta 97.6 0.00018 3.9E-09 48.3 6.2 47 340-386 2-48 (49)
212 PRK12568 glycogen branching en 97.5 0.00024 5.2E-09 76.2 8.0 64 27-93 139-210 (730)
213 cd02856 Glycogen_debranching_e 97.5 0.00039 8.4E-09 56.3 7.3 53 28-84 11-67 (103)
214 KOG0475 Cl- channel CLC-3 and 97.5 0.00088 1.9E-08 68.7 11.3 128 340-469 558-694 (696)
215 PLN02447 1,4-alpha-glucan-bran 97.5 0.00027 5.9E-09 76.0 8.1 63 27-92 115-191 (758)
216 cd05809 CBM20_beta_amylase Bet 97.5 0.0006 1.3E-08 54.7 8.0 57 25-81 2-68 (99)
217 COG4175 ProV ABC-type proline/ 97.5 0.00066 1.4E-08 64.6 9.3 168 247-471 215-384 (386)
218 PRK12313 glycogen branching en 97.4 0.00049 1.1E-08 74.2 8.6 66 27-94 39-111 (633)
219 cd05820 CBM20_novamyl Novamyl 97.4 0.0019 4E-08 52.2 9.9 55 25-81 2-70 (103)
220 cd05818 CBM20_water_dikinase P 97.4 0.0012 2.6E-08 52.2 8.2 53 26-81 2-61 (92)
221 PRK14705 glycogen branching en 97.3 0.00043 9.3E-09 78.2 7.5 64 27-92 639-710 (1224)
222 PRK14706 glycogen branching en 97.3 0.0006 1.3E-08 72.9 7.4 64 27-93 39-110 (639)
223 TIGR03415 ABC_choXWV_ATP choli 97.1 0.0064 1.4E-07 61.1 12.3 84 359-471 298-381 (382)
224 cd05811 CBM20_glucoamylase Glu 97.1 0.0021 4.6E-08 52.2 7.2 59 23-81 4-73 (106)
225 cd05813 CBM20_genethonin_1 Gen 97.0 0.0032 6.9E-08 50.1 7.4 53 27-81 4-62 (95)
226 PRK05402 glycogen branching en 97.0 0.002 4.4E-08 70.4 8.2 66 27-93 132-204 (726)
227 cd02853 MTHase_N_term Maltooli 97.0 0.0028 6.1E-08 49.2 6.6 61 28-94 10-72 (85)
228 cd02852 Isoamylase_N_term Isoa 96.9 0.003 6.4E-08 52.6 6.8 57 28-86 9-73 (119)
229 cd05807 CBM20_CGTase CGTase, C 96.9 0.0057 1.2E-07 49.2 8.2 57 25-81 2-70 (101)
230 cd05810 CBM20_alpha_MTH Glucan 96.8 0.0043 9.4E-08 49.5 6.9 54 26-81 1-64 (97)
231 cd05817 CBM20_DSP Dual-specifi 96.8 0.0057 1.2E-07 49.1 7.6 46 34-81 11-62 (100)
232 KOG0475 Cl- channel CLC-3 and 96.7 0.0073 1.6E-07 62.2 9.1 136 157-302 557-694 (696)
233 cd05467 CBM20 The family 20 ca 96.7 0.0086 1.9E-07 47.5 7.6 53 28-81 4-65 (96)
234 TIGR02402 trehalose_TreZ malto 96.6 0.0056 1.2E-07 64.6 8.0 61 28-95 1-64 (542)
235 TIGR01515 branching_enzym alph 96.6 0.01 2.3E-07 63.7 9.7 65 27-93 29-101 (613)
236 cd05816 CBM20_DPE2_repeat2 Dis 96.6 0.027 5.8E-07 45.1 9.9 46 34-81 12-64 (99)
237 PRK05402 glycogen branching en 96.6 0.0054 1.2E-07 67.1 7.6 62 27-91 29-95 (726)
238 PF03423 CBM_25: Carbohydrate 95.8 0.032 6.9E-07 43.4 6.4 51 35-85 17-74 (87)
239 cd05806 CBM20_laforin Laforin 95.6 0.16 3.5E-06 41.4 10.1 51 31-81 10-74 (112)
240 cd05815 CBM20_DPE2_repeat1 Dis 95.6 0.04 8.6E-07 44.3 6.5 54 28-81 4-65 (101)
241 TIGR02104 pulA_typeI pullulana 95.5 0.038 8.1E-07 59.4 7.6 62 28-93 21-93 (605)
242 KOG0476 Cl- channel CLC-2 and 95.4 0.054 1.2E-06 57.2 7.9 58 244-305 592-649 (931)
243 KOG0476 Cl- channel CLC-2 and 95.3 0.25 5.4E-06 52.4 12.3 57 151-207 590-648 (931)
244 COG1125 OpuBA ABC-type proline 95.1 0.16 3.5E-06 47.3 9.2 113 338-468 187-308 (309)
245 PLN02960 alpha-amylase 94.9 0.026 5.6E-07 61.5 4.1 56 27-82 129-198 (897)
246 COG4175 ProV ABC-type proline/ 94.6 0.074 1.6E-06 51.0 5.8 93 256-388 292-384 (386)
247 PF11806 DUF3327: Domain of un 94.3 0.43 9.2E-06 39.7 9.2 84 26-110 2-115 (122)
248 PLN02316 synthase/transferase 94.3 0.21 4.5E-06 56.2 9.4 59 26-84 329-399 (1036)
249 PLN02316 synthase/transferase 94.2 0.13 2.8E-06 57.8 7.5 63 27-89 155-227 (1036)
250 COG1125 OpuBA ABC-type proline 93.9 0.22 4.7E-06 46.5 7.3 113 258-385 195-308 (309)
251 TIGR03415 ABC_choXWV_ATP choli 93.8 0.23 4.9E-06 50.1 8.0 47 339-387 334-380 (382)
252 TIGR02100 glgX_debranch glycog 93.5 0.18 3.9E-06 54.8 7.2 55 27-85 15-75 (688)
253 PLN02950 4-alpha-glucanotransf 93.4 0.59 1.3E-05 52.3 11.0 60 22-81 5-74 (909)
254 TIGR02102 pullulan_Gpos pullul 92.8 0.28 6.1E-06 55.7 7.4 65 28-94 329-408 (1111)
255 PLN02950 4-alpha-glucanotransf 92.5 0.85 1.9E-05 51.0 10.7 69 22-92 149-233 (909)
256 PRK03705 glycogen debranching 92.0 0.35 7.5E-06 52.3 6.7 53 28-84 21-77 (658)
257 TIGR02103 pullul_strch alpha-1 91.3 0.96 2.1E-05 50.4 9.3 66 27-94 136-215 (898)
258 PRK10439 enterobactin/ferric e 89.0 2.1 4.5E-05 43.7 8.9 89 22-111 35-165 (411)
259 PLN03244 alpha-amylase; Provis 88.2 0.46 1E-05 51.4 3.7 56 27-82 132-201 (872)
260 cd02857 CD_pullulan_degrading_ 87.4 3.4 7.4E-05 33.6 7.8 58 24-81 16-79 (116)
261 PRK14510 putative bifunctional 86.9 2.4 5.1E-05 49.4 8.7 55 27-85 24-84 (1221)
262 KOG0470 1,4-alpha-glucan branc 86.2 0.64 1.4E-05 49.5 3.3 41 28-69 115-157 (757)
263 PLN02877 alpha-amylase/limit d 82.2 3.6 7.7E-05 46.2 7.1 63 27-93 223-301 (970)
264 PF02903 Alpha-amylase_N: Alph 78.7 4.8 0.0001 33.2 5.3 68 22-89 19-98 (120)
265 PF01357 Pollen_allerg_1: Poll 77.2 9.8 0.00021 29.1 6.2 61 23-88 11-77 (82)
266 COG3794 PetE Plastocyanin [Ene 69.0 16 0.00036 30.5 6.0 49 26-78 62-111 (128)
267 KOG1263 Multicopper oxidases [ 63.3 6.1 0.00013 41.8 3.0 61 48-112 85-150 (563)
268 KOG2118 Predicted membrane pro 62.8 15 0.00033 38.4 5.8 108 339-465 215-324 (498)
269 PRK11388 DNA-binding transcrip 52.7 48 0.001 36.0 7.8 97 349-462 61-163 (638)
270 TIGR02375 pseudoazurin pseudoa 49.1 63 0.0014 26.5 6.1 49 26-78 23-71 (116)
271 PRK10785 maltodextrin glucosid 45.9 78 0.0017 34.1 8.0 63 22-84 17-87 (598)
272 PF13473 Cupredoxin_1: Cupredo 45.2 27 0.00059 27.8 3.5 18 61-78 73-91 (104)
273 TIGR03503 conserved hypothetic 42.1 51 0.0011 33.0 5.4 42 40-84 152-195 (374)
274 PF11896 DUF3416: Domain of un 40.9 35 0.00075 30.7 3.7 40 46-88 55-99 (187)
275 PF14347 DUF4399: Domain of un 40.2 55 0.0012 25.3 4.2 32 60-92 49-80 (87)
276 PF05198 IF3_N: Translation in 39.6 62 0.0013 24.3 4.3 29 361-389 12-40 (76)
277 PF03370 CBM_21: Putative phos 38.3 94 0.002 25.2 5.6 53 36-88 33-103 (113)
278 PRK10301 hypothetical protein; 37.2 1.9E+02 0.0041 24.0 7.3 63 22-85 44-114 (124)
279 TIGR03102 halo_cynanin halocya 36.7 1.1E+02 0.0024 25.0 5.8 47 27-78 51-99 (115)
280 PF05198 IF3_N: Translation in 34.4 78 0.0017 23.8 4.2 25 443-468 12-36 (76)
281 PF07495 Y_Y_Y: Y_Y_Y domain; 30.7 38 0.00081 24.1 1.9 22 68-89 34-58 (66)
282 TIGR02657 amicyanin amicyanin. 29.8 1.2E+02 0.0027 22.8 4.8 48 27-78 20-69 (83)
283 PRK11388 DNA-binding transcrip 29.6 1.8E+02 0.0039 31.6 7.8 99 261-378 63-162 (638)
284 PRK00446 cyaY frataxin-like pr 29.5 33 0.00071 27.7 1.5 26 62-91 58-83 (105)
285 cd00503 Frataxin Frataxin is a 29.1 32 0.00069 27.7 1.4 17 73-90 67-83 (105)
286 PF00127 Copper-bind: Copper b 28.7 1.4E+02 0.003 23.4 5.1 17 27-43 26-43 (99)
287 KOG2118 Predicted membrane pro 28.6 1.2E+02 0.0026 31.9 5.8 109 249-382 215-324 (498)
288 TIGR03009 plancto_dom_2 Planct 28.5 68 0.0015 29.4 3.6 16 79-94 66-84 (210)
289 PF14044 NETI: NETI protein 26.9 69 0.0015 22.5 2.5 20 424-443 3-22 (57)
290 PF01491 Frataxin_Cyay: Fratax 26.5 65 0.0014 26.1 2.8 19 72-91 69-87 (109)
291 PF05738 Cna_B: Cna protein B- 25.5 1.5E+02 0.0033 21.2 4.4 33 59-92 24-58 (70)
292 PLN00044 multi-copper oxidase- 25.1 79 0.0017 34.0 3.8 47 61-110 98-149 (596)
293 PF01344 Kelch_1: Kelch motif; 25.0 91 0.002 20.2 2.9 36 36-71 11-47 (47)
294 cd07694 Ig2_CD4 Second immunog 24.6 2.5E+02 0.0053 21.9 5.4 52 28-81 31-83 (88)
295 COG1559 Aminodeoxychorismate l 24.5 7E+02 0.015 24.8 11.5 144 249-442 46-191 (342)
296 TIGR03422 mito_frataxin fratax 24.5 58 0.0013 25.8 2.1 19 72-91 66-84 (97)
297 COG5227 SMT3 Ubiquitin-like pr 23.2 85 0.0018 24.3 2.6 23 74-96 62-84 (103)
298 COG2216 KdpB High-affinity K+ 23.2 1.1E+02 0.0024 31.9 4.2 37 429-467 413-449 (681)
299 PF07483 W_rich_C: Tryptophan- 23.0 2.3E+02 0.0051 22.9 5.3 53 27-85 22-74 (109)
300 TIGR03000 plancto_dom_1 Planct 22.2 1.2E+02 0.0027 22.7 3.3 48 28-87 5-58 (75)
301 PF14827 Cache_3: Sensory doma 21.9 90 0.002 25.3 2.9 17 363-379 93-109 (116)
302 PF11797 DUF3324: Protein of u 21.6 2E+02 0.0044 24.3 5.1 49 36-90 72-126 (140)
303 PLN02792 oxidoreductase 21.4 77 0.0017 33.6 2.9 47 60-108 84-135 (536)
304 PF04234 CopC: CopC domain; I 20.8 3.1E+02 0.0067 21.4 5.7 63 22-86 18-88 (97)
305 COG3397 Uncharacterized protei 20.1 6.7E+02 0.015 24.1 8.3 78 26-113 114-211 (308)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.95 E-value=1.1e-26 Score=229.89 Aligned_cols=281 Identities=30% Similarity=0.535 Sum_probs=232.1
Q ss_pred eEEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCC-hhhHhhhcHHHHHHHHhhh
Q 012109 157 QVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT-EEELETHTISAWKEGKAYL 235 (471)
Q Consensus 157 ~vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~-~~~l~~~~i~~~~~~~~~~ 235 (471)
.+++++..+++.+|+.+|..++.+++|+||...++++|+++..|++.++...++.+.... .+.++...+..++....
T Consensus 77 ~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (381)
T KOG1764|consen 77 KLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVEC-- 154 (381)
T ss_pred eeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhh--
Confidence 399999999999999999999999999999999999999999999999988876422221 22233333333332211
Q ss_pred ccccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcc
Q 012109 236 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 315 (471)
Q Consensus 236 ~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~ 315 (471)
..+....++++.+.|..++.++...+.+++++++||.| .+.+ .+.+++|++.|++++....+... +..+
T Consensus 155 -----~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~ilt~~rIl~~l~~~~~~~~-~~~~ 223 (381)
T KOG1764|consen 155 -----LLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLYILTQRRILKFLWLNGRLLP-LPSL 223 (381)
T ss_pred -----hhccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceeeehhHHHHHHHHHHhhcccc-cHHH
Confidence 11223455559999999999999999999999999994 4667 89999999999999987766544 4567
Q ss_pred cccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCc
Q 012109 316 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 395 (471)
Q Consensus 316 ~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~ 395 (471)
+..++.++.+++|. .+..+..++++.+|+++|...+++++||+|+.|+.+|.++..|+..+...+.+..++
T Consensus 224 l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~ 294 (381)
T KOG1764|consen 224 LSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLD 294 (381)
T ss_pred hhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccc
Confidence 88999999999987 588999999999999999999999999999999999999999999998887776654
Q ss_pred ccccC-HHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 396 LSEMT-IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 396 ~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+ +.++...+. .-...+++|+++++|.+++.+|..+++||+|||| ++|+++|+||++|++.+++
T Consensus 295 ---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd-~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 295 ---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD-EDGVLVGVISLSDILSYLV 359 (381)
T ss_pred ---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc-CCCcEEEEeeHHHHHHHHH
Confidence 33 666654422 1134589999999999999999999999999999 5899999999999999885
No 2
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.93 E-value=2e-25 Score=171.43 Aligned_cols=79 Identities=42% Similarity=0.907 Sum_probs=73.5
Q ss_pred eeeEEEEecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCeeeE
Q 012109 25 LIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV 104 (471)
Q Consensus 25 ~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn~ 104 (471)
.+||+|+|+++|++|+|+|||++|++..||.+.. ++ |+++++||||.|+|||+|||+|++||++|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 4799999999999999999999999878999853 34 99999999999999999999999999999999999999999
Q ss_pred EE
Q 012109 105 LL 106 (471)
Q Consensus 105 ~~ 106 (471)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.78 E-value=1.1e-18 Score=135.51 Aligned_cols=77 Identities=34% Similarity=0.726 Sum_probs=68.5
Q ss_pred eeEEEEecCC-CceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCEEe-eCCCCC-eeeCCCCCee
Q 012109 26 IPMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR-HDEHQP-FISSEYGIVN 102 (471)
Q Consensus 26 ~~~~f~~~~~-~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~-~d~~~~-~~~~~~g~~n 102 (471)
+|++|+|..+ +++|+|+|+||+|+. .+|.+. .+|.|+++++|++|.|+|||+|||.|. .||.++ +..|+.|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~~-~~m~~~--~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWNA-IPMERE--GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCCc-ccCEEC--CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 5899996665 599999999999984 689874 469999999999999999999999998 999998 5889999999
Q ss_pred eEE
Q 012109 103 TVL 105 (471)
Q Consensus 103 n~~ 105 (471)
|+|
T Consensus 79 ~v~ 81 (82)
T cd02861 79 AVF 81 (82)
T ss_pred eEc
Confidence 987
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.76 E-value=9.3e-18 Score=150.72 Aligned_cols=120 Identities=20% Similarity=0.378 Sum_probs=110.3
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
+++++|+++++++.+++++.+|.++|.+++++..||+|+ ++++|++|.+|+..+++.+.+ +..|+++|
T Consensus 173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~~M----- 240 (294)
T COG2524 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSDYM----- 240 (294)
T ss_pred hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHHHh-----
Confidence 457789999999999999999999999999999999985 599999999999999988744 57889887
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
.+.++++.+++.+.+|++.|..+++.||.|+| .+|+++|+||++||++.+.+
T Consensus 241 --------~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 241 --------RKNVITINEDEDIYDAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred --------ccCCceEcCchhHHHHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHHHHhhc
Confidence 55899999999999999999999999999999 58999999999999998864
No 5
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.70 E-value=4.5e-17 Score=155.30 Aligned_cols=90 Identities=36% Similarity=0.739 Sum_probs=84.5
Q ss_pred CCceeeEEEEecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCe
Q 012109 22 DTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIV 101 (471)
Q Consensus 22 ~~~~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~ 101 (471)
.....|++|+|.++++.|+|+|+|.+|+..++|.+..+..|.|+..+.|++|.|+|||+|||+|++|++.|+++|..|+.
T Consensus 76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~ 155 (289)
T KOG1616|consen 76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL 155 (289)
T ss_pred cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence 45578999999999999999999999999999998766666799999999999999999999999999999999999999
Q ss_pred eeEEEeccCC
Q 012109 102 NTVLLATEPN 111 (471)
Q Consensus 102 nn~~~v~~~~ 111 (471)
||++.|.+.+
T Consensus 156 ~N~i~v~~~~ 165 (289)
T KOG1616|consen 156 NNILEVQDPD 165 (289)
T ss_pred ccceEecCcc
Confidence 9999999887
No 6
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.66 E-value=6.7e-16 Score=138.86 Aligned_cols=121 Identities=19% Similarity=0.359 Sum_probs=106.3
Q ss_pred cCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccc
Q 012109 239 IDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 318 (471)
Q Consensus 239 ~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~ 318 (471)
...++.+|+++++++.+++|+.+|..++.+++++..||+| ++ +++|++|.+||..++.+. .+..
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd----~d---k~vGiit~~dI~~aia~g---------~~~~ 234 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD----DD---KIVGIITLSDIAKAIANG---------NLDA 234 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec----CC---ceEEEEEHHHHHHHHHcC---------Cccc
Confidence 4455668999999999999999999999999999999993 33 699999999999887653 1234
Q ss_pred ccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 012109 319 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 387 (471)
Q Consensus 319 ~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~ 387 (471)
.++++ |+++++++..++.+.+|+++|..+++.++.|+|.+|+++|+||+.|++..++
T Consensus 235 kV~~~------------M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 235 KVSDY------------MRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred cHHHH------------hccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 44444 9999999999999999999999999999999999999999999999998654
No 7
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.66 E-value=4.5e-16 Score=142.32 Aligned_cols=127 Identities=19% Similarity=0.360 Sum_probs=108.8
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
.+.++|++++++++.++++.+|.++|.+++++.+||+|++.+++|+|+++|+++......++++ + ++ .
T Consensus 246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrl-------r-~~----~ 313 (382)
T COG3448 246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRL-------R-FL----R 313 (382)
T ss_pred cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHh-------h-cc----C
Confidence 3457799999999999999999999999999999999999999999999999985544333222 1 11 1
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
++...++|+.++.++.++++..+++-++.+.+.|++||+| +.|+++||||.+|++.++.
T Consensus 314 ~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 314 PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHH
Confidence 2334568899999999999999999999999999999999 5899999999999998874
No 8
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.62 E-value=6.2e-15 Score=134.95 Aligned_cols=173 Identities=16% Similarity=0.273 Sum_probs=131.7
Q ss_pred eeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHH-HHHHHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHhCC
Q 012109 192 FVGVLSASDFILILRELGNHGSNLTEEELETHTISA-WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNE 270 (471)
Q Consensus 192 ~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~ 270 (471)
-+| ++..|+-..|+.+. ..-+++.++++.+.-+. ++...... .+-.+.++|+++++++.+++++.+|.++|.+++
T Consensus 200 rvg-fs~~Dld~aL~~~~-E~lDIdrddLe~llr~~elqa~~R~~--~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ 275 (382)
T COG3448 200 RVG-FSSEDLDAALQRLG-ETLDIDRDDLERLLRETELQALRRRM--GELTCADIMSRDVVTVSTDTSIDHARKLLQEHR 275 (382)
T ss_pred ccC-CCHHHHHHHHHhcC-ceecCCHHHHHHHHHHHHHHHHHHHh--ccccHHHhcCccceecCCcCChHHHHHHHHHcC
Confidence 345 78899999998874 34556677777653222 22222221 234557799999999999999999999999999
Q ss_pred ccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccccccCCCCCCCceEecCCCcHH
Q 012109 271 VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLS 350 (471)
Q Consensus 271 ~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~ 350 (471)
++.+||+ ++.. +++|+++++|+++...... .+.++.+ -.+.++.+|+.++.++.++++..
T Consensus 276 ikaLPV~---d~~~---rl~GiVt~~dl~~~a~~~p----------~qrlr~~----~~~~vk~imt~~v~tv~pdtpa~ 335 (382)
T COG3448 276 IKALPVL---DEHR---RLVGIVTQRDLLKHARPSP----------FQRLRFL----RPPTVKGIMTTPVVTVRPDTPAV 335 (382)
T ss_pred ccccccc---cccc---ceeeeeeHHHHhhccCcch----------HHHhhcc----CCCcccccccCcceeecCCCcHH
Confidence 9999999 4555 8999999999986432211 0111111 12345677999999999999999
Q ss_pred HHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 351 AALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 351 ~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+++-++.+.+.+++||+|++|+++||||+.|++.++..
T Consensus 336 ~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 336 ELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred HHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence 99999999999999999999999999999999986643
No 9
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=2e-14 Score=120.35 Aligned_cols=119 Identities=39% Similarity=0.701 Sum_probs=96.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+++.+++||+|++|+++|+++.+|++.+...+.... ...++.+.+.. ..+|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~---~~~~~~~~~~~-------~~~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNN---LDLTVGEALER-------RSQD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccc---ccCCHHHHHhh-------cccC
Confidence 5788999999999999999999999999998899999999999998654332211 11234443311 1134
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEEC-CCCCEEEEEEHHHhhcC
Confidence 55788999999999999999999999999999 46899999999999864
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.61 E-value=1.3e-14 Score=121.08 Aligned_cols=117 Identities=21% Similarity=0.440 Sum_probs=100.7
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~ 413 (471)
.+|..+++.+.+++++.++.++|.+++++.+||+++ ++++|-||.+++.++..++. .++.+..++++|
T Consensus 69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---e~i~~~~vr~vM-------- 136 (187)
T COG3620 69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---ESIRSLRVREVM-------- 136 (187)
T ss_pred hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---cchhhhhHHHHh--------
Confidence 448999999999999999999999999999999985 99999999999999875542 123456777766
Q ss_pred cccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 414 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 414 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
..++++|++++++..+..++..++. +.|++ +|+++||||+.||++.+.|
T Consensus 137 -----~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 137 -----GEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred -----cCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence 7799999999999999988888764 77776 6999999999999998764
No 11
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=3.1e-14 Score=117.59 Aligned_cols=110 Identities=9% Similarity=0.244 Sum_probs=93.1
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.+|++.|.+.+.+.++|+|++|+++|+|+..|+.+..... +...++.++|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~------~~~~~v~~~~------------- 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPND------YETLKVCEVY------------- 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcccc------ccccChhhee-------------
Confidence 467889999999999999989999999999889999999999998742211 1123566654
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+|++++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~~~~~Giit~~di~~~ 111 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KEGKLVGTIYERELLRF 111 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCeEEEEEEhHHhhcC
Confidence 45788999999999999999999999999999 46999999999999863
No 12
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=2.9e-14 Score=115.02 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=85.4
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
.++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 46789999999999999999999999999974 89999999999986321
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEehHHHHHH
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFKF 468 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~-~~liGiIs~~Dil~~ 468 (471)
+.++.+++++.+|+++|.+++++++||+| ++ |+++|+||.+|++++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVID-PSTGTGLYILTSRRILKF 98 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEE-CCCCCceEEeehhhhhcC
Confidence 55789999999999999999999999999 45 899999999999863
No 13
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=1.1e-13 Score=114.68 Aligned_cols=112 Identities=19% Similarity=0.345 Sum_probs=95.4
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
.+.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+.+....... .....++.+++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~~~------------- 65 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG---PGCTAPVENVM------------- 65 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC---CcccCCHHHHh-------------
Confidence 36688999999999999999999999999999999999999999876543110 02235677766
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.+|++.|.+++..++||+| ++|+++|+||++|+++
T Consensus 66 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 66 TRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK 113 (114)
T ss_pred cCCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence 45788999999999999999999999999999 5789999999999975
No 14
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=1.8e-13 Score=114.26 Aligned_cols=113 Identities=21% Similarity=0.332 Sum_probs=94.5
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|..++..++||+|++|+++|+|+..|+.+...... .+...++.++|..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~~~~~----------- 66 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGVIMTR----------- 66 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHHHhCC-----------
Confidence 5678999999999999999999999999998899999999999998654221 1223566776621
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCC---CeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS---KRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~---~~liGiIs~~Dil~ 467 (471)
..++.++++++++.+|+++|.+++++.+||+|+ + |+++|+||++||++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 67 MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence 126889999999999999999999999999994 4 69999999999975
No 15
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=1.4e-13 Score=136.12 Aligned_cols=119 Identities=13% Similarity=0.261 Sum_probs=102.6
Q ss_pred ccCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 331 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 331 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
+++++|.+ +++++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+.+....+. .+.+.++.++|
T Consensus 203 ~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~im--- 275 (326)
T PRK10892 203 RVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIADVM--- 275 (326)
T ss_pred cHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHHhc---
Confidence 46677886 8999999999999999999989888888998999999999999987654321 12345677766
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.+++.++.+++++.+|++.|.+++++++||+| +++++|+||++||+++
T Consensus 276 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 276 ----------TPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ----------CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 56899999999999999999999999999998 4899999999999975
No 16
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.52 E-value=3.8e-13 Score=111.55 Aligned_cols=112 Identities=18% Similarity=0.333 Sum_probs=94.5
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+....... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~------------- 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA----GEPSAVDEVA------------- 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc----cccccHHHhc-------------
Confidence 46688999999999999999999999999988999999999999986643211 1123466654
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKF 468 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~--~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.++++.|.+++.+.+||+| ++ |+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd-~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVD-RGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEe-CCCCCeEEEEEEhHHhhcC
Confidence 45789999999999999999999999999999 45 799999999999864
No 17
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.52 E-value=1.2e-13 Score=116.55 Aligned_cols=113 Identities=17% Similarity=0.272 Sum_probs=95.0
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+++++++||+|++|+++|+++.+|+++....... ..+.++.++|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~----~~~~~v~~im------------- 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV----QPSDPVSKAL------------- 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc----CCCCcHHHHh-------------
Confidence 57889999999999999999999999999988999999999999975543321 1236788877
Q ss_pred CCcceEeCCCCCHHHHHHHHH---------cCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 419 SQRCQMCLPSDTLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~---------~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
.+++.++.+++++.++.++|. +.+.+++||+| ++|+++|+||.+||++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence 558999999999999999653 33678889998 579999999999999875
No 18
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=4.9e-13 Score=110.79 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=94.7
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++.+|+++.+..... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------ 66 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---DPDRVNVYEIM------------ 66 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---CCCccCHHHHh------------
Confidence 46789999999999999999999999999987 899999999999985433211 11234677766
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++++++++.+|++.|.+++.+.+||+| + |+++|+||..|++++
T Consensus 67 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 67 -TKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA 114 (114)
T ss_pred -cCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence 45789999999999999999999999999999 4 999999999999864
No 19
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=3.9e-13 Score=112.98 Aligned_cols=117 Identities=22% Similarity=0.393 Sum_probs=95.6
Q ss_pred CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccC------cccccCHHHHHhcCCCC
Q 012109 338 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI------NLSEMTIHQALQLGQDS 411 (471)
Q Consensus 338 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l------~~~~~~v~~~~~~~~~~ 411 (471)
+++.++.+++++.++++.|.+.+++++||++++|+++|+|+..+++........... .....++.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------ 75 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIM------ 75 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhc------
Confidence 367889999999999999999999999999988999999999999876543211000 01123445444
Q ss_pred CCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 412 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 412 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.+++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|++++
T Consensus 76 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 76 -------SPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA 124 (124)
T ss_pred -------cCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence 56799999999999999999999999999999 57999999999999864
No 20
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=3.2e-13 Score=111.83 Aligned_cols=111 Identities=19% Similarity=0.347 Sum_probs=92.2
Q ss_pred CceEecCCCcHHHHHHHHHhcC-CCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
++.++.+++++.++++.|.+++ .+.+||+|++|+++|+|+..|+++...... ...++.+++..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~------~~~~v~~~~~~---------- 65 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW------AQTTVIQVMTP---------- 65 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc------cccchhhhhcc----------
Confidence 4678899999999999997665 889999998899999999999998654321 13466776632
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.+|++.|.+++.+++||+| ++++++|+||..||++
T Consensus 66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~-~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVE-DSGQVIGLITEADLLR 113 (114)
T ss_pred -cccceEECCCCcHHHHHHHHHHCCCCeeEEEc-CCCcEEEEEeccceec
Confidence 12467899999999999999999999999999 4689999999999875
No 21
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.49 E-value=1.1e-12 Score=130.54 Aligned_cols=196 Identities=14% Similarity=0.181 Sum_probs=148.6
Q ss_pred EEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhhhcc
Q 012109 158 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR 237 (471)
Q Consensus 158 vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 237 (471)
++.+.+..++.+|...+.++++.++||.|.+.++++.++|..-|++++........ ...+-..++..+ .
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~---~~~~l~~s~~dl---~----- 232 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP---LPSLLSKSLSDL---G----- 232 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc---cHHHhhCCHHHh---C-----
Confidence 49999999999999999999999999999888899999999999999866543211 122222222211 1
Q ss_pred ccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccc
Q 012109 238 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK 317 (471)
Q Consensus 238 ~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~ 317 (471)
+ .....+..+..++++.+|+++|..++++.+||+ +..| +.+|+++..|+........-. .+.
T Consensus 233 ----i--g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV---~~~g---~~v~~~s~~Dv~~l~~~~~~~------~~~ 294 (381)
T KOG1764|consen 233 ----I--GTWSNIASISEDTPVIEALKIMSERRISALPVV---DENG---KKVGNYSRFDVIHLAREGTYN------NLD 294 (381)
T ss_pred ----c--chhhhheeecCCCcHHHHHHHHHhcCcCcceEE---cCCC---ceecceehhhhhhhhhcCccC------ccc
Confidence 1 134478999999999999999999999999999 4555 679999999988665433211 111
Q ss_pred cc-cccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 318 LP-ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 318 ~~-v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
.. +.... . ........++++.++.++.+++..|..++++++.|||++|.++|+||..|++.++..
T Consensus 295 ~~~l~~~~-----~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 295 LSCLSEAL-----S-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred hhHHHHHh-----h-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence 11 11110 0 001123458999999999999999999999999999999999999999999997754
No 22
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=1.3e-12 Score=107.38 Aligned_cols=108 Identities=21% Similarity=0.457 Sum_probs=93.6
Q ss_pred CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 338 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 338 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
+++.++.++.++.++++.|.+++.+++||+|++|+++|+++..++++...... .++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~~~------------ 61 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVEDIM------------ 61 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHHhc------------
Confidence 35778999999999999999999999999998899999999999987654321 2355554
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.+|++.|.+++.+.+||++ ++|+++|+||+.||++
T Consensus 62 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~ 109 (110)
T cd04605 62 -TRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK 109 (110)
T ss_pred -CCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence 45788999999999999999999999999999 5799999999999975
No 23
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.48 E-value=1e-13 Score=146.42 Aligned_cols=282 Identities=14% Similarity=0.219 Sum_probs=177.7
Q ss_pred ccccccccccee-EEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhh--
Q 012109 146 EAAERISEADLQ-VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET-- 222 (471)
Q Consensus 146 ~~~~~~~~~~~~-vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~-- 222 (471)
++.+++.+.+.+ ++++++++++.+|++.|.+++++.+||+|.+ ++++|++|..|+++.+..... . +.+..
T Consensus 65 ~~~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~-~-----~~~~~~~ 137 (546)
T PRK14869 65 DVKPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILD-P-----EILSKSP 137 (546)
T ss_pred ccCCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcc-h-----hhhhhcC
Confidence 445677777654 9999999999999999999999999999854 799999999999987654221 0 00111
Q ss_pred hcHHHHHHHHhh-hccccC----CCC-------------cccC-CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCC-
Q 012109 223 HTISAWKEGKAY-LNRQID----SHG-------------KAFP-RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ- 282 (471)
Q Consensus 223 ~~i~~~~~~~~~-~~~~~~----~~g-------------~im~-~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~- 282 (471)
.++..+.+.... .-+... ..+ ..+. ..++.+..... ....+.+.+++.++|+....-
T Consensus 138 ~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d---~~~~ai~~~~~~lIlt~g~~~~ 214 (546)
T PRK14869 138 TSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRED---IQLAAIEAGVRLLIITGGAPVS 214 (546)
T ss_pred CCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHH---HHHHHHHcCCCEEEECCCCCCC
Confidence 011111100000 000000 000 0122 23444433333 344578889999999843110
Q ss_pred --------CCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccccccCCCCC-CCceEecCCCcHHHHH
Q 012109 283 --------DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAAL 353 (471)
Q Consensus 283 --------~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~ 353 (471)
.. .+.++.|..|......... ...++.++ |. ++++++.+++++.++.
T Consensus 215 ~~v~~la~~~---~i~ii~t~~dt~~t~~~l~---------~~~~V~~i------------M~~~~~~~~~~~~~~~~~~ 270 (546)
T PRK14869 215 EDVLELAKEN---GVTVISTPYDTFTTARLIN---------QSIPVSYI------------MTTEDLVTFSKDDYLEDVK 270 (546)
T ss_pred HHHHHHHHhC---CCeEEEecccHHHHHHHhh---------cCCCHHHh------------ccCCCcEEECCCCcHHHHH
Confidence 12 4778888888776544321 13345554 88 8899999999999999
Q ss_pred HHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc------ccCccc---ccCHHHHHhcCCCCCCcccccCCcceE
Q 012109 354 NLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY------AHINLS---EMTIHQALQLGQDSYSPYELRSQRCQM 424 (471)
Q Consensus 354 ~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~------~~l~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~ 424 (471)
+.|.+++++.+||+|++|+++|+||++|++........ ...... +..+.+++ +.+..+++++..++.
T Consensus 271 ~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~ii----DHH~~~~~~~~~pi~ 346 (546)
T PRK14869 271 EVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEII----DHHRLGDIQTSNPIF 346 (546)
T ss_pred HHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEe----cCCccCCCCCCCCcE
Confidence 99999999999999999999999999999986543110 000000 00000111 111223355555544
Q ss_pred e---CCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 425 C---LPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 425 v---~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
+ +...+..-+.++|.+.++...|++. +..+.||+|-++.++
T Consensus 347 ~~~~~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~ 390 (546)
T PRK14869 347 FRNEPVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFK 390 (546)
T ss_pred EEeeeeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCcc
Confidence 4 4467778889999999998888776 457888888877665
No 24
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=6.2e-13 Score=106.78 Aligned_cols=95 Identities=18% Similarity=0.376 Sum_probs=85.9
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
+++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 577899999999999999999999999999889999999999998721
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.+.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||+++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 156789999999999999999999999999 46899999999999864
No 25
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1.3e-12 Score=107.66 Aligned_cols=112 Identities=23% Similarity=0.461 Sum_probs=94.4
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.++.++.++++.|.+++++++||+|++++++|+++..|+++.+...... ....++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~---~~~~~~~~~~------------- 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGAS---ALDTPVSEIM------------- 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCC---ccccCHHHhc-------------
Confidence 467789999999999999999999999999889999999999999865432110 1124566655
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.++++.|.+.+.+++||++ + ++++|+||..||+++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence 45789999999999999999999999999999 4 999999999999864
No 26
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.48 E-value=3.9e-13 Score=137.92 Aligned_cols=213 Identities=15% Similarity=0.212 Sum_probs=155.2
Q ss_pred eeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHh---
Q 012109 192 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH--- 268 (471)
Q Consensus 192 ~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~--- 268 (471)
+..-++..|+..++..+. .....+.+..+.-.........+.++++.+|.+|.+++++++++.++.+|++.|.+
T Consensus 86 ~~~~l~~dd~~~ll~~l~---~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~ 162 (449)
T TIGR00400 86 MINEMNLDDVIDLLEEVP---ANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAK 162 (449)
T ss_pred HHHcCChhHHHHHHHhCC---HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCC
Confidence 344466666666664432 11112223334444455667778888999999999999999999999999999975
Q ss_pred --CCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccccccCCCCCCCceEecCC
Q 012109 269 --NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPS 346 (471)
Q Consensus 269 --~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~ 346 (471)
++...++|+ ++++ +++|+++.+|++.. .. ..+++++ |.++++++.++
T Consensus 163 ~~~~~~~v~Vv---d~~~---~l~GvV~l~dLl~a-----~~--------~~~v~~i------------m~~~~~~v~~~ 211 (449)
T TIGR00400 163 TKEDIYTLYVT---NESK---HLKGVLSIRDLILA-----KP--------EEILSSI------------MRSSVFSIVGV 211 (449)
T ss_pred CccceeEEEEE---CCCC---eEEEEEEHHHHhcC-----CC--------CCcHHHH------------hCCCCeeECCC
Confidence 456778888 3556 89999999998631 00 1234444 77888999999
Q ss_pred CcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccccCCcceEeC
Q 012109 347 ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCL 426 (471)
Q Consensus 347 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ 426 (471)
+++.+|++.|.+++...+||+|++|+++|+||.+|+++.+... ...+++.. ..++..
T Consensus 212 ~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~----------~~ed~~~~-------------~gv~~~ 268 (449)
T TIGR00400 212 NDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE----------ATEDFYMI-------------AAVKPL 268 (449)
T ss_pred CCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh----------hHHHHHHh-------------cCCCCC
Confidence 9999999999999999999999999999999999999877543 23555532 233444
Q ss_pred CCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 427 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 427 ~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
+++.+.+++..|.+++...++|.- +.|++| ..++.
T Consensus 269 ~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~ 303 (449)
T TIGR00400 269 DDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIIS 303 (449)
T ss_pred cchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHH
Confidence 578889999999999988777652 455555 44443
No 27
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.47 E-value=2.5e-13 Score=113.41 Aligned_cols=119 Identities=19% Similarity=0.399 Sum_probs=98.7
Q ss_pred CCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 242 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 242 ~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
+..+|.+|++++.|++++.+|+++|.+++++.+||++ + + +++|-+|..+|.+.+.+... .+.
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~---~-~---k~VGsItE~~iv~~~le~~e-----------~i~ 128 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE---E-D---KVVGSITENDIVRALLEGME-----------SIR 128 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee---C-C---eeeeeecHHHHHHHHhcccc-----------chh
Confidence 3558999999999999999999999999999999993 3 5 89999999999998765421 122
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
.+ ++.++|..++++++++.++..+-.++..+. ++.|+ ++|+++|+||+.|++++.+.
T Consensus 129 ~~-------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 129 SL-------RVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred hh-------hHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 22 234449999999999999999988886644 78888 58999999999999997653
No 28
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=1.3e-12 Score=107.92 Aligned_cols=111 Identities=20% Similarity=0.353 Sum_probs=93.8
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++..+.+++++.++++.|.+.+.+++||+|++|+++|+++.+|+.+....... +...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~------------- 64 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVREVM------------- 64 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHHhc-------------
Confidence 36678999999999999999999999999988999999999999875432211 1234666665
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++..++++.++++.|.+++...+||+| ++|+++|+||..||++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 65 NSPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR 112 (113)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence 45789999999999999999999999999999 5789999999999975
No 29
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=8.2e-13 Score=111.61 Aligned_cols=124 Identities=21% Similarity=0.348 Sum_probs=93.1
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
.++++.+++++.++++.|.+++++++||+|++|+++|+++..|+++......... ..+....+............+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 77 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFTDSDGVK 77 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcccccccc
Confidence 4678999999999999999999999999998899999999999998653321100 001100000000000011234
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.+|++.|.+++.+++||+| ++++++|+||..||++
T Consensus 78 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~ 125 (126)
T cd04642 78 SRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS 125 (126)
T ss_pred cCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence 66899999999999999999999999999999 5799999999999986
No 30
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.1e-12 Score=108.02 Aligned_cols=109 Identities=22% Similarity=0.430 Sum_probs=93.7
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+.+...+||++++|+++|+|+..++.+...... ...++.+++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~------------- 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG------PDAPVRGVM------------- 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC------CCCcHHHHh-------------
Confidence 4667899999999999998888999999998899999999999998664331 124566665
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++..++++.+|++.|.+++..++||+| ++++++|+||..|+.+
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~ 110 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGE 110 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhc
Confidence 45788999999999999999999999999999 4689999999999975
No 31
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=1.5e-12 Score=107.57 Aligned_cols=110 Identities=18% Similarity=0.302 Sum_probs=93.9
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
.+.++..++++.++++.|.+.+.+.++|+|++|+++|+++.+|+++....... ...++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~------------- 64 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS-----LDDPVSEVM------------- 64 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC-----cCCCHHHhh-------------
Confidence 35678999999999999999999999999988999999999999876543211 124577766
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+||+.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 112 (113)
T cd04607 65 NRNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence 44688999999999999999999999999999 5799999999999974
No 32
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.5e-12 Score=109.09 Aligned_cols=116 Identities=17% Similarity=0.351 Sum_probs=95.4
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccC-----cccccCHHHHHhcCCCCCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-----NLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l-----~~~~~~v~~~~~~~~~~~~ 413 (471)
++.++.+++++.++++.|.+.+++.+||++++|+++|+++..++++.......... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVM-------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhh--------
Confidence 46788999999999999999999999999988999999999999986543221100 01234566655
Q ss_pred cccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 414 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 414 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..|++++
T Consensus 74 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 74 -----KTDVLTVTPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDFLRL 122 (122)
T ss_pred -----CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc-CCCCEEEEEEHHHhhcC
Confidence 45788999999999999999999999999999 46899999999999863
No 33
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.46 E-value=7.5e-13 Score=127.76 Aligned_cols=117 Identities=15% Similarity=0.399 Sum_probs=99.4
Q ss_pred CCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 334 EPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 334 ~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
++|.+ .++++..++++.++++.+.+++++++||++++ ++++|+|+.+|++........ ...+.+++
T Consensus 71 diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~l~----- 139 (292)
T PRK15094 71 DIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDKVL----- 139 (292)
T ss_pred EEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHHHc-----
Confidence 33776 68999999999999999999999999999875 789999999999875432111 13466655
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
+++.++++++++.++++.|.+++.+.+||+| +.|.++|+||+.||+..++|
T Consensus 140 ---------r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 140 ---------RQAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred ---------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence 2466899999999999999999999999999 67999999999999999875
No 34
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.46 E-value=6.4e-13 Score=131.11 Aligned_cols=119 Identities=13% Similarity=0.232 Sum_probs=102.4
Q ss_pred ccCCCCCCC--ceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 331 KIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 331 ~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
.++++|.++ ++++.+++++.+|++.|..++...+||+|++|+++|+|+..|+.+.+..+.. .+.++.+++
T Consensus 198 ~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~-----~~~~v~~im--- 269 (321)
T PRK11543 198 KVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA-----LTTPVNEAM--- 269 (321)
T ss_pred HHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC-----cCCcHHHhc---
Confidence 456668887 9999999999999999998899999999999999999999999886543211 124567765
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.+++.++.+++++.+|++.|.++++.++|||| ++|+++|+||++||+++
T Consensus 270 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 270 ----------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA 318 (321)
T ss_pred ----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence 56789999999999999999999999999999 57899999999999975
No 35
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.2e-12 Score=110.18 Aligned_cols=116 Identities=18% Similarity=0.348 Sum_probs=94.7
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccc-------CcccccCHHHHHhcCCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAH-------INLSEMTIHQALQLGQD 410 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~-------l~~~~~~v~~~~~~~~~ 410 (471)
++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+|+..|++..+....... ......++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM----- 76 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh-----
Confidence 46788999999999999999999999999987 99999999999998665321100 001123455544
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.+++.++++++++.++++.|.+.+.+.+||+| ++|+++|+||..||+++
T Consensus 77 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 77 --------TRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA 125 (125)
T ss_pred --------cCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence 55799999999999999999999999999999 46899999999999874
No 36
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=1.6e-12 Score=111.37 Aligned_cols=115 Identities=15% Similarity=0.266 Sum_probs=93.5
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccC-------------------ccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-------------------NLSEM 399 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l-------------------~~~~~ 399 (471)
+++++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.......... .....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 45678999999999999999999999999998999999999999986643211100 00022
Q ss_pred CHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 400 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 400 ~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
++.++ |..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||.+||+++
T Consensus 82 ~v~~~-------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 82 VAEDI-------------MTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE 135 (135)
T ss_pred cHHHh-------------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence 34444 466788999999999999999999999999999 4 999999999999863
No 37
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.1e-12 Score=110.28 Aligned_cols=119 Identities=13% Similarity=0.248 Sum_probs=91.0
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
++.++.+++++.++++.|.+++++++||+|++ |+++|+|+..|+++........ .+..+.... .......+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~--~~~~~~~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARS------FPGLDPLYP--IPLRDLTI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHh------ccchhhhhh--hhhhhccc
Confidence 56788999999999999999899999999987 8999999999998865432110 011110000 00000113
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 466 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil 466 (471)
|..++.++++++++.+|++.|.+++.+++||+| ++++++|+||++||-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVD-NQGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC-CCCcEEEEEeHHHhh
Confidence 467889999999999999999999999999999 478999999999974
No 38
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=3.7e-13 Score=108.55 Aligned_cols=96 Identities=46% Similarity=0.727 Sum_probs=84.7
Q ss_pred eEEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhhhc
Q 012109 157 QVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 236 (471)
Q Consensus 157 ~vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 236 (471)
+++++++++|+.+|++.|.++++.++||+|+++++++|++|..|++..+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence 3789999999999999999999999999997567999999999987433
Q ss_pred cccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHH
Q 012109 237 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 300 (471)
Q Consensus 237 ~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~ 300 (471)
. ++++.+++++.+|+++|.+++++++||++ +++| +++|+++.+|++.
T Consensus 51 ----------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~---~~~giit~~d~~~ 97 (98)
T cd04618 51 ----------R--LVSIHPERSLFDAALLLLKNKIHRLPVID--PSTG---TGLYILTSRRILK 97 (98)
T ss_pred ----------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEE--CCCC---CceEEeehhhhhc
Confidence 0 56899999999999999999999999994 2237 8999999999874
No 39
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=1.2e-12 Score=107.28 Aligned_cols=105 Identities=20% Similarity=0.355 Sum_probs=92.6
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..+++... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~~~------------- 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEKVM------------- 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHHHh-------------
Confidence 567899999999999999999999999999889999999999997531 124677766
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+++.+.+||+| ++|+++|+||..|+++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence 44788999999999999999999999999999 5799999999999986
No 40
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.45 E-value=1.8e-12 Score=106.97 Aligned_cols=111 Identities=19% Similarity=0.404 Sum_probs=94.9
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
+++++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+....... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~~~------------- 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASDIM------------- 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHHhc-------------
Confidence 56789999999999999999999999999988999999999999886543211 1124667765
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCC-CCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG-SKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~-~~~liGiIs~~Dil~ 467 (471)
.+++.++.+++++.++++.|...+.+.+||+| + .++++|+||..|++.
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLS 113 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhc
Confidence 55789999999999999999999999999999 4 689999999999975
No 41
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.4e-12 Score=109.10 Aligned_cols=119 Identities=21% Similarity=0.336 Sum_probs=92.4
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++++++.+++++.+|++.|.+++.+.+||+ +++| +++|+++..|++.++...... ....++....
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv---~~~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~~--- 65 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIV---DENG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEAL--- 65 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEE---CCCC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHHH---
Confidence 367899999999999999999999999999 3467 899999999999765332110 0001111100
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
....+|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 66 ---~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 66 ---ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred ---hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 011225567889999999999999999999999999998899999999999875
No 42
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2e-12 Score=107.23 Aligned_cols=114 Identities=18% Similarity=0.300 Sum_probs=91.9
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccC-cccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-NLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l-~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
.++++..++++.++++.|.+++++.+||+|++|+++|+++.+|+++.......... .+...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~------------ 69 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVM------------ 69 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHh------------
Confidence 46789999999999999999999999999988999999999999986643211100 00124566655
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.+++.++.+++++.+|++.|.+.+ .+||+| ++++++|+||..|++++
T Consensus 70 -~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 70 -NTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA 116 (116)
T ss_pred -cCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence 557889999999999999998865 599999 57999999999999864
No 43
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.45 E-value=2.7e-12 Score=105.38 Aligned_cols=108 Identities=24% Similarity=0.394 Sum_probs=93.5
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++..++++.++++.|.+.+++++||+++ |+++|+++..|+++....+.. ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~~~------------- 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKDVM------------- 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHHHh-------------
Confidence 5678899999999999999999999999998 999999999999987554311 24567665
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+.+.+.+||++ ++|+++|+||..|+++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence 45789999999999999999999999999999 4689999999999975
No 44
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.45 E-value=2.5e-12 Score=105.25 Aligned_cols=106 Identities=18% Similarity=0.365 Sum_probs=92.2
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++..+.++.++.++++.|.+.+..++||+|++|+++|+++..|+....... .++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~---------~~v~~~~------------- 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEA---------KSLEDIM------------- 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcC---------CcHhHhh-------------
Confidence 567789999999999999999999999999889999999999998754221 3566655
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
...+.++++++++.++++.|.+++.+++||+| ++|+++|+||.+|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence 44788999999999999999999999999999 5789999999999975
No 45
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2.7e-12 Score=105.78 Aligned_cols=110 Identities=16% Similarity=0.372 Sum_probs=94.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++..+.++.++++.|.+.+.+++||+|++|+++|+++..|+++.+..... ...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~------------- 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGID-----LDTPVSEIM------------- 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCC-----CccCHHHhc-------------
Confidence 46788999999999999999999999999988999999999999886654321 124566655
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+++...+||+| ++|+++|++|..|+++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence 45788999999999999999999999999999 4799999999999975
No 46
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.9e-12 Score=110.34 Aligned_cols=115 Identities=17% Similarity=0.338 Sum_probs=93.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCc----------------ccccCHH
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN----------------LSEMTIH 402 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~----------------~~~~~v~ 402 (471)
++.++.+++++.++++.|.+.+++++||+|++|+++|+++..++++........... +...++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 467899999999999999988999999999889999999999999866432110000 0001333
Q ss_pred HHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 403 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
+ +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus 82 ~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 82 E-------------IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS 132 (132)
T ss_pred H-------------hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence 3 3466789999999999999999999999999999 5 999999999999874
No 47
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.6e-12 Score=107.45 Aligned_cols=113 Identities=19% Similarity=0.350 Sum_probs=94.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+.+.+.+||+|++++++|+++..++++.+....+.. ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~v~~~~------------- 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC--DGVATVRDIM------------- 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc--CCCccHHHHh-------------
Confidence 4678899999999999999888899999998899999999999997654322110 1134667665
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.++++.|.+++.+.+||+| + |+++|+||..||+++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence 44788999999999999999999999999999 4 899999999999864
No 48
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.45 E-value=2e-12 Score=105.42 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=90.0
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+... .++.+++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~~~------------- 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGDHA------------- 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhhhc-------------
Confidence 4678899999999999999899999999998899999999999987421 1345544
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
.+.+.++.+++++.++++.|.+++...+||+| ++++++|+||.+|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIAD 105 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence 44677899999999999999999999999999 5789999999999986
No 49
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2.7e-12 Score=105.64 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=93.4
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+++.+++||+|++|+++|+++..|++.+...... .+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~------------- 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFNIV------------- 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHHHh-------------
Confidence 46788999999999999999999999999988999999999999876543211 124567665
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
.+++.++.+++++.+|++.|.+++..++||+| + |+++|+||+.||+.
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence 45788999999999999999999999999999 4 99999999999974
No 50
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2.4e-12 Score=109.00 Aligned_cols=117 Identities=23% Similarity=0.413 Sum_probs=93.0
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccC---------cccccCHHHHHhcCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI---------NLSEMTIHQALQLGQ 409 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l---------~~~~~~v~~~~~~~~ 409 (471)
++..+.+++++.+++++|.+.+.+.+||+|++|+++|+++..|+..++........ .....++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAM---- 77 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHh----
Confidence 46678999999999999999999999999988999999999999876432111000 00123344444
Q ss_pred CCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeC-CCCeEEEEEehHHHHHH
Q 012109 410 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA-GSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~~~~liGiIs~~Dil~~ 468 (471)
..+++++.+++++.++++.|.+.+.+.+||++. ++++++|+||.+||+++
T Consensus 78 ---------~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 78 ---------SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred ---------cCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 668999999999999999999999999999851 46899999999999863
No 51
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=3.4e-12 Score=104.87 Aligned_cols=107 Identities=23% Similarity=0.459 Sum_probs=93.2
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
+++++..+.++.++.+.|.+.+.+++||+|+ |+++|+++..|+.+...... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~------~~~~~~~~~------------- 62 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL------GHAPVKDYM------------- 62 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc------ccCcHHHHh-------------
Confidence 5778999999999999999889999999998 99999999999988653321 235677766
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.+++++|.+++.+.+||+| +|+++|+||..|+++
T Consensus 63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 45788999999999999999999999999999 589999999999985
No 52
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.7e-12 Score=108.71 Aligned_cols=116 Identities=20% Similarity=0.353 Sum_probs=93.4
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-cC----cccccCHHHHHhcCCCCCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA-HI----NLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~-~l----~~~~~~v~~~~~~~~~~~~ 413 (471)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+++........ .. .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIM-------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHh--------
Confidence 467899999999999999999999999999889999999999998742111000 00 00123455544
Q ss_pred cccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 414 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 414 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++..++++.++++.|.+++.+.+||+| ++|+++|++|+.|++++
T Consensus 74 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 74 -----STPVYSVTPDDSIATAVELMLEHDIGRLPVVN-EKDQLVGIVDRHDVLKA 122 (122)
T ss_pred -----cCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc-CCCcEEEEEEhHHhhcC
Confidence 55789999999999999999999999999999 47999999999999864
No 53
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.44 E-value=3.3e-12 Score=134.99 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=137.6
Q ss_pred CcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccc--
Q 012109 243 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI-- 320 (471)
Q Consensus 243 g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v-- 320 (471)
+.+|.++++++.+++++.+|+++|.+++++.+||+ +++| +++|+++..|+.+.+....... .......++
T Consensus 71 ~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv---d~~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~ 142 (546)
T PRK14869 71 RDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVV---DEEG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLEN 142 (546)
T ss_pred HHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHH
Confidence 34688899999999999999999999999999999 4567 8999999999998765432100 000111111
Q ss_pred --------------------cccccccc-ccccCCCCCCC-ceEecCCCcHHHHHHHHHhcCCCEEEEEcCC--------
Q 012109 321 --------------------CAIPVGTW-VPKIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDN-------- 370 (471)
Q Consensus 321 --------------------~~~~i~~~-~~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-------- 370 (471)
..+.++.. ...+.+.+.+. ++.+.... ++...+.+.++++++|+...
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v~~ 219 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDVLE 219 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence 11111110 00111223333 44443333 33445678899999888632
Q ss_pred ----CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccccC-CcceEeCCCCCHHHHHHHHHcCCCCE
Q 012109 371 ----DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRR 445 (471)
Q Consensus 371 ----g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~ 445 (471)
..+.+++|..|.......-.. ..++.++| + +++.++++++++.++.+.|.++++++
T Consensus 220 la~~~~i~ii~t~~dt~~t~~~l~~------~~~V~~iM-------------~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 280 (546)
T PRK14869 220 LAKENGVTVISTPYDTFTTARLINQ------SIPVSYIM-------------TTEDLVTFSKDDYLEDVKEVMLKSRYRS 280 (546)
T ss_pred HHHhCCCeEEEecccHHHHHHHhhc------CCCHHHhc-------------cCCCcEEECCCCcHHHHHHHHHhcCCCc
Confidence 258889999998876544221 36788876 5 57999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEehHHHHHH
Q 012109 446 LVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 446 l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
+||+| ++|+++|+||+.|+++.
T Consensus 281 ~PVvd-~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 281 YPVVD-EDGKVVGVISRYHLLSP 302 (546)
T ss_pred eEEEc-CCCCEEEEEEHHHhhcc
Confidence 99999 58999999999999874
No 54
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.44 E-value=3.9e-12 Score=104.68 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=93.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
+++.+..+.++.++++.|.+.+...++|+|+ |+++|+++..|+......... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL----PSSTPVGEIA------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC----CCCCCHHHHh-------------
Confidence 4567899999999999999999999999997 899999999999886543211 1235677766
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++..+++++++.++++.|.+++.+.+||+| +++++|+||..|++++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhcC
Confidence 44788999999999999999999999999999 3899999999999874
No 55
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.44 E-value=3.8e-12 Score=104.71 Aligned_cols=108 Identities=18% Similarity=0.350 Sum_probs=92.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
++.++.++.++.++++.|.+.+.+.+||++++ |+++|+++..++++....... ..++..++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~------------ 63 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRDLL------------ 63 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHHHh------------
Confidence 46789999999999999999899999999987 999999999999987654321 13445433
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
.++.++.+++++.++++.|.+++.+++||+| ++|+++|+||+.|+++
T Consensus 64 --~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 --RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE 110 (111)
T ss_pred --cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence 3578899999999999999999999999999 5799999999999975
No 56
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.43 E-value=3.1e-12 Score=105.65 Aligned_cols=111 Identities=16% Similarity=0.350 Sum_probs=94.4
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.+.+..... ....++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~~~------------- 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVADVM------------- 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHHhh-------------
Confidence 45678899999999999988888999999988999999999999987654321 1224577766
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|..++...+||+| ++++++|+||..||++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~iG~it~~di~~ 113 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVD-DNGRPVGVLHIHDLLR 113 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCCEEEEEEHHHhhc
Confidence 44688999999999999999999999999999 4799999999999986
No 57
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.43 E-value=7.1e-13 Score=132.06 Aligned_cols=119 Identities=24% Similarity=0.387 Sum_probs=105.5
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH-hccccccCcccccCHHHHHhcCC
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA-KDKAYAHINLSEMTIHQALQLGQ 409 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~-~~~~~~~l~~~~~~v~~~~~~~~ 409 (471)
++++++..++++|++.+++.+|.+.|.+.+++++.+++.++...||||++|+.... +++. ....+|+++|
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-----~~~~~V~evm---- 220 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-----SKTQKVSEVM---- 220 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----Ccccchhhhh----
Confidence 45666888999999999999999999999999999999999999999999999754 3332 1246777766
Q ss_pred CCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 410 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
+.|++++..++.+.+|+-+|.+.+++++||++ +|+++|+||..||++.+
T Consensus 221 ---------T~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 221 ---------TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLF 269 (610)
T ss_pred ---------ccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhh
Confidence 78999999999999999999999999999998 69999999999999875
No 58
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=3.2e-12 Score=105.89 Aligned_cols=111 Identities=20% Similarity=0.335 Sum_probs=90.0
Q ss_pred CceEecCCCcHHHHHHHHHhcC-CCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
++.++..+.++.++++.|..++ ...++|++ +|+++|+++..|+++....... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~------------ 64 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGEVM------------ 64 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHHhc------------
Confidence 4567899999999999998888 66777777 5899999999999986543211 1234667665
Q ss_pred cCCcceEeCCC--CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 418 RSQRCQMCLPS--DTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 418 ~~~~~~~v~~~--~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.++ +++.+|++.|.+++...+||+| ++|+++|+||++|++++
T Consensus 65 -~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 65 -TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLD-DQGQLIGLVTAESIRQV 115 (115)
T ss_pred -CCCcEEEecccccCHHHHHHHHHHhCCceEEEEc-CCCCEEEEEEhHHhhcC
Confidence 4467788776 7899999999999999999999 47999999999999863
No 59
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.8e-12 Score=110.88 Aligned_cols=115 Identities=21% Similarity=0.364 Sum_probs=93.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc------C------------cccccC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------I------------NLSEMT 400 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~------l------------~~~~~~ 400 (471)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+.+......... + .....+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 5778999999999999999999999999998899999999999987543221000 0 001123
Q ss_pred HHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 401 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 401 v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
+.+ +|..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||+.|++++
T Consensus 83 v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~ 135 (135)
T cd04586 83 VAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA 135 (135)
T ss_pred HHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence 444 3456799999999999999999999999999999 5999999999999864
No 60
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.42 E-value=5.8e-12 Score=103.58 Aligned_cols=109 Identities=20% Similarity=0.389 Sum_probs=92.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++..+.++.++.+.|.+++.+++||+|+ ++++|+++..++++....... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL----DPDTPVSEVM------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC----CccCCHHHHh-------------
Confidence 5678899999999999999888999999997 999999999999875432211 1124577765
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+++..++||++ + |+++|+||..|+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence 45788999999999999999999999999999 4 99999999999985
No 61
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=2.2e-12 Score=131.95 Aligned_cols=112 Identities=13% Similarity=0.223 Sum_probs=99.1
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~ 413 (471)
++|.++++++.+++++.+++++|.+++++++||+|++++++|+||.+|+.... ...++.++|
T Consensus 93 ~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----------~~~~V~diM-------- 154 (479)
T PRK07807 93 DLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----------RFTQVRDVM-------- 154 (479)
T ss_pred cccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----------cCCCHHHhc--------
Confidence 44788999999999999999999999999999999999999999999985321 024577766
Q ss_pred cccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 414 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 414 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
+.++.++++++++.+|++.|.+++++.+||+| ++++++|+||.+||+++.
T Consensus 155 -----t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 155 -----STDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRAT 204 (479)
T ss_pred -----cCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence 56899999999999999999999999999999 579999999999999864
No 62
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.42 E-value=5e-12 Score=103.85 Aligned_cols=109 Identities=24% Similarity=0.422 Sum_probs=92.6
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+....... ....+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~~------------- 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE-----ATVLVGDVM------------- 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc-----cccCHHHhc-------------
Confidence 5678999999999999999888999999997 999999999999886543221 012445444
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+++.+.+||+| ++++++|+||..||++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~ 110 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEc-CCCCEEEEEEHHHhhh
Confidence 56799999999999999999999999999999 4699999999999986
No 63
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.42 E-value=8.3e-12 Score=129.25 Aligned_cols=174 Identities=18% Similarity=0.270 Sum_probs=128.0
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccc
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 323 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~ 323 (471)
.+|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|+++.+|+.... ....++.++
T Consensus 91 dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVv---d~~g---~lvGiVt~~DL~~~~------------~~~~~V~di 152 (486)
T PRK05567 91 SGVVTDPVTVTPDTTLAEALALMARYGISGVPVV---DENG---KLVGIITNRDVRFET------------DLSQPVSEV 152 (486)
T ss_pred hcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEE---ccCC---EEEEEEEHHHhhhcc------------cCCCcHHHH
Confidence 3678899999999999999999999999999999 3566 899999999986321 012234444
Q ss_pred cccccccccCCCCC-CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHH
Q 012109 324 PVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH 402 (471)
Q Consensus 324 ~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~ 402 (471)
|. ++++++.+++++.++++.|.+++++.+||+|++|+++|+||.+||++.........-....+.+.
T Consensus 153 ------------m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~ 220 (486)
T PRK05567 153 ------------MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVG 220 (486)
T ss_pred ------------cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEE
Confidence 66 68899999999999999999999999999999999999999999998653210000000011112
Q ss_pred HHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 403 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
. .+...+ .-.++++.|.+.+++. +|+|..+++..++++.-+.++.
T Consensus 221 a------------------ai~~~~--~~~e~a~~L~~agvdv-ivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 221 A------------------AVGVGA--DNEERAEALVEAGVDV-LVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred e------------------ecccCc--chHHHHHHHHHhCCCE-EEEECCCCcchhHHHHHHHHHh
Confidence 1 122222 1277888999999984 5777446888888777666654
No 64
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=2.5e-12 Score=108.67 Aligned_cols=112 Identities=22% Similarity=0.419 Sum_probs=88.6
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHH-----HhccccccCcccccCHHHHHhcCCCCCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL-----AKDKAYAHINLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~-----~~~~~~~~l~~~~~~v~~~~~~~~~~~~ 413 (471)
++.++..++++.++++.|.+++.+.+||+|++|+++|+++..|+.+. ...+. ......++.++|.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~im~------- 71 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVADVMT------- 71 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHHhcC-------
Confidence 46788999999999999998999999999988999999999999852 11110 0112356777762
Q ss_pred cccccCCcce--Ee----CCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 012109 414 PYELRSQRCQ--MC----LPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFK 467 (471)
Q Consensus 414 ~~~~~~~~~~--~v----~~~~~l~~a~~~m~~~~~~~l~Vvd~~~-~~liGiIs~~Dil~ 467 (471)
++.. .+ .+++++.++++.|.+++.+++||+| ++ |+++|+||++||++
T Consensus 72 ------~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd-~~~~~~~G~it~~di~~ 125 (126)
T cd04640 72 ------PKEDLKALDLEELENASVGDVVETLKASGRQHALVVD-REHHQIRGIISTSDIAR 125 (126)
T ss_pred ------chhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEE-CCCCEEEEEEeHHHHhh
Confidence 2332 23 3689999999999999999999999 45 79999999999986
No 65
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.41 E-value=4.2e-12 Score=104.72 Aligned_cols=111 Identities=15% Similarity=0.314 Sum_probs=91.9
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+++.+.+||+++ |+++|+++..|++........ .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~i~------------- 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---DPESTLVERVM------------- 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC---CcCcCCHHHhc-------------
Confidence 4678899999999999999889999999997 999999999999854322111 11124566655
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+++.+++||++ ++++++|+||..|++.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence 45788999999999999999999999999999 4799999999999975
No 66
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.41 E-value=7.1e-12 Score=102.92 Aligned_cols=109 Identities=23% Similarity=0.350 Sum_probs=93.2
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+.+....... ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~------------- 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGEVM------------- 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHHhc-------------
Confidence 4667899999999999999888999999986 999999999999987643311 235677765
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||.+||++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVD-DDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEEC-CCCcEEEEEEhHHhhc
Confidence 45788999999999999999999999999999 4799999999999985
No 67
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.41 E-value=3.2e-12 Score=129.33 Aligned_cols=117 Identities=16% Similarity=0.282 Sum_probs=100.4
Q ss_pred cCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 332 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 332 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
++++|.+ ++++++.++++.++++.+.+++++++||++++ ++++|+++.+|++...... ...+.+++
T Consensus 193 v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~~~--- 261 (408)
T TIGR03520 193 TKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQSLL--- 261 (408)
T ss_pred eeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHHHc---
Confidence 3445876 78999999999999999999999999999864 6899999999998754321 13456654
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
+++.++++++++.++++.|.+++.+.++|+| +.|.++|+||..||+..++|
T Consensus 262 -----------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 262 -----------REPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred -----------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence 3588999999999999999999999999999 68999999999999999875
No 68
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.9e-12 Score=104.92 Aligned_cols=108 Identities=14% Similarity=0.273 Sum_probs=89.6
Q ss_pred ceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccc
Q 012109 250 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 329 (471)
Q Consensus 250 ~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~ 329 (471)
++++.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..|+++..... ....++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~dl~~~~~~~---------~~~~~v~~~------ 61 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVV---DEEN---KVLGQVTLSDLLEIGPND---------YETLKVCEV------ 61 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEE---cCCC---CEEEEEEHHHHHhhcccc---------ccccChhhe------
Confidence 5788999999999999999999999999 4566 899999999998632110 011233333
Q ss_pred cccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 330 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 330 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 62 ------~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 62 ------YIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ------eecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 7777889999999999999999999999999998899999999999975
No 69
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=5e-12 Score=104.80 Aligned_cols=111 Identities=19% Similarity=0.265 Sum_probs=91.9
Q ss_pred ceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccc
Q 012109 250 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 329 (471)
Q Consensus 250 ~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~ 329 (471)
+.++.+++++.+|++.|.+++...+||+ +++| +++|+++..++++.+...... ....++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv---d~~g---~~~G~vt~~dl~~~~~~~~~~------~~~~~v~~~------ 64 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVC---DPHG---KLAGVLTKTDVVRQMGRCGGP------GCTAPVENV------ 64 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEE---CCCC---CEEEEEehHHHHHHHhhcCCC------cccCCHHHH------
Confidence 5678999999999999999999999999 4567 899999999998765321000 112334444
Q ss_pred cccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 330 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 330 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..+++++.+++++.++++.|.+++...+||+|++|+++|+|+++|+++
T Consensus 65 ------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 65 ------MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ------hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 7778899999999999999999999999999998899999999999874
No 70
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.6e-12 Score=105.92 Aligned_cols=114 Identities=18% Similarity=0.385 Sum_probs=92.5
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc------CcccccCHHHHHhcCCCCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~------l~~~~~~v~~~~~~~~~~~ 412 (471)
+++++.+++++.++++.|.+.+.+++||+|+ |+++|+++..++.+......... ..+...++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIM------- 73 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHc-------
Confidence 5678899999999999999999999999996 99999999999987654221100 001123445444
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.++++.|.+.+.+.+||+| + |+++|+||..|++++
T Consensus 74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 74 ------TRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY 121 (121)
T ss_pred ------cCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence 56789999999999999999999999999999 5 999999999999863
No 71
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=1.1e-11 Score=102.16 Aligned_cols=111 Identities=14% Similarity=0.313 Sum_probs=91.0
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
.+.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+++....... .+...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------- 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRAIM------------- 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHHHh-------------
Confidence 357789999999999999888887887776 5999999999999976543110 11134677766
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.+|+++|.+++..++||+| +|+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence 44688999999999999999999999999999 4899999999999864
No 72
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=8.6e-12 Score=102.85 Aligned_cols=111 Identities=22% Similarity=0.385 Sum_probs=91.8
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHH-HHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~-~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
++.++.+++++.++++.|.+++.+++||+|+ |+++|+++..|++ +....+.. ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~~~------------ 64 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGDVM------------ 64 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHHhc------------
Confidence 4678899999999999999999999999997 9999999999987 33322211 1123466655
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
...+.++.+++++.++++.|...+.+++||+| ++|+++|+||..|++++
T Consensus 65 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~ 113 (113)
T cd04622 65 -TRGVVTVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVGIVSLGDLARA 113 (113)
T ss_pred -cCCccEECCCCCHHHHHHHHHHcCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 45788899999999999999999999999999 46999999999999863
No 73
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.39 E-value=7.4e-12 Score=104.57 Aligned_cols=114 Identities=23% Similarity=0.385 Sum_probs=92.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCc------ccccCHHHHHhcCCCCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN------LSEMTIHQALQLGQDSY 412 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~------~~~~~v~~~~~~~~~~~ 412 (471)
++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..++............. ....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD--------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence 4678899999999999999999999999997 9999999999999865432110000 01123344
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
+|.+++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFR 121 (122)
T ss_pred ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhh
Confidence 3456789999999999999999999999999999 4699999999999986
No 74
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.39 E-value=7.4e-12 Score=103.70 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=88.5
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcC---CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 415 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~ 415 (471)
++.++..++++.++++.|.+++..++||+|+ +|+++|+++..|+...... ..++.+++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~---------- 63 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS---------ETPLSEVM---------- 63 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc---------CCCHHHhc----------
Confidence 4677889999999999999889999999997 6899999999998753211 13577766
Q ss_pred cccCCcceEeCC--CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 416 ELRSQRCQMCLP--SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 416 ~~~~~~~~~v~~--~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
...+.++.. ++++.++++.|.+++.+.+||+| ++|+++|+||+.||++
T Consensus 64 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~ 113 (114)
T cd04602 64 ---TPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK 113 (114)
T ss_pred ---CCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence 334556655 99999999999999999999999 5799999999999975
No 75
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=5.7e-12 Score=103.43 Aligned_cols=103 Identities=17% Similarity=0.311 Sum_probs=87.6
Q ss_pred ecCCCcHHHHHHHHHhcC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 343 LRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 343 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.+++++.. .+.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~----------~~~~v~~~~------------ 59 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD----------PDTPVSDIM------------ 59 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC----------CcchHHHHh------------
Confidence 467889999999998776 46899999889999999999987621 124567765
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
..++.++.+++++.++++.|..++.+.+||+| ++++++|+||..|+++++
T Consensus 60 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 60 -DTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI 109 (109)
T ss_pred -CCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence 44789999999999999999999999999999 579999999999999864
No 76
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1e-11 Score=104.32 Aligned_cols=120 Identities=16% Similarity=0.262 Sum_probs=91.0
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.+++++.+|++.|.+++++++||++ .+++ +++|+++..|+++++.................+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~------- 69 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTE--EESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPLR------- 69 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEe--CCCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhh-------
Confidence 567899999999999999999999999993 2226 7999999999998764321110000000000000
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 383 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~ 383 (471)
...+|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+.
T Consensus 70 ---~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 70 ---DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ---hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 1123667889999999999999999999999999999889999999999985
No 77
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.37 E-value=5e-12 Score=134.25 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=102.8
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
+++++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+....... ..+.++.+++
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~dim----- 518 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAADYA----- 518 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHHhc-----
Confidence 3456688889999999999999999999999999999999999999999999885432211 1124566655
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEehHHHHHHhh
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~-~~liGiIs~~Dil~~l~ 470 (471)
.+++.++++++++.+|++.|.+++.+++||+|+++ ++++|+||++|+++++.
T Consensus 519 --------~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 519 --------HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred --------cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 56789999999999999999999999999999422 58999999999999874
No 78
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.37 E-value=1.5e-11 Score=100.80 Aligned_cols=109 Identities=19% Similarity=0.366 Sum_probs=89.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++..++++.++++.|.+++.+++||+++ |+++|+++..|+.+........ ...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~----~~~~~~~~~------------- 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK----FSLPVREVM------------- 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc----cCcCHHHHh-------------
Confidence 4677899999999999999999999999997 9999999999999875432110 124566665
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.+++.++++++++.+++++|.+ . ..+||++ ++|+++|+||++||+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~-~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVD-EGGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-C-CceeEEe-cCCeEEEEEeHHHhhcC
Confidence 4578889999999999999988 3 3478888 57999999999999864
No 79
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.37 E-value=7.2e-12 Score=102.72 Aligned_cols=106 Identities=21% Similarity=0.427 Sum_probs=89.2
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++..+..+.++.++++.|.+++...+||+|++|+++|+++.+++..... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~~~------------- 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSEVM------------- 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHHhc-------------
Confidence 5678899999999999999899999999998899999999999864321 124667765
Q ss_pred CCcceEeCC-CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLP-SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~-~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
...+..+.. ++++.++++.|.+.+.+.+||+| ++++++|+||.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence 334555666 99999999999999999999999 5799999999999985
No 80
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=2.5e-11 Score=99.91 Aligned_cols=110 Identities=19% Similarity=0.381 Sum_probs=91.3
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.+...... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~---~~~~~~~~~~------------- 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLK---PREVPVGEVM------------- 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCC---cccCCHHHhc-------------
Confidence 4677899999999999999989999999986 5999999999999855322110 1134566665
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
.+++.++.+++++.++++.|.+++.+.+||+| + ++++|+||..|+++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVD-D-DELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEee-C-CEEEEEEEhhhhhc
Confidence 45788999999999999999999999999999 3 49999999999975
No 81
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=9.4e-12 Score=103.78 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=90.2
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++++.+++++.+|++.|.+++...+||+ ++++ +++|+++..++++....... ....++.++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~---d~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~~~~~----- 63 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVV---DEDG---DLVGVVSRKDLLKASIGGAD-------LQKVPVGVI----- 63 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEE---cCCC---CEEEEEEHHHHHHHHHcCCC-------ccCCCHHHH-----
Confidence 56889999999999999999999999999 3456 79999999999886542110 011223333
Q ss_pred ccccCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~dl~~ 384 (471)
|.+ ++.++.+++++.+++++|.+++++.+||+|++ |+++|+||++|+++
T Consensus 64 -------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 64 -------MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred -------hCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 553 68899999999999999999999999999976 69999999999865
No 82
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.2e-11 Score=102.41 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=91.3
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.+++++.+|++.|.+++.+.+||++ ++++ +++|+++..|+++++...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~----- 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEK--RRES---DAYGIVTMRDILKKVVAEGRD------PDRVNVYEI----- 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCCC---cEEEEEehHHHHHHHHhCCCC------CCccCHHHH-----
Confidence 567899999999999999999999999993 2226 899999999999866432110 111233343
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++.++.+++++.++++.|.+++...+||+|+ |+++|+|+..|+++
T Consensus 66 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 66 -------MTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred -------hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 6678899999999999999999999999999987 99999999999875
No 83
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.6e-11 Score=99.75 Aligned_cols=103 Identities=17% Similarity=0.335 Sum_probs=89.4
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++.+++++.++++.|.+++.+.+||+| +++++|+++..++.+... ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~~~------------- 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVADAM------------- 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHHHc-------------
Confidence 467789999999999999989999999998 689999999999987421 23566665
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+++...+||+| + |+++|+||..|++.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence 45788999999999999999999999999999 4 99999999999973
No 84
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.36 E-value=3.6e-11 Score=123.06 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=119.5
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccc
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 323 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~ 323 (471)
.+|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|+++.+|+... . ...++.++
T Consensus 93 ~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VV---D~~g---klvGIVT~rDL~~~------~-------~~~~V~di 153 (479)
T PRK07807 93 DLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVV---DEEG---RPVGVVTEADCAGV------D-------RFTQVRDV 153 (479)
T ss_pred cccccCCeEECCCCCHHHHHHHHHhcCCceEEEE---CCCC---eEEEEEeHHHHhcC------c-------cCCCHHHh
Confidence 3688999999999999999999999999999999 4567 89999999998421 0 01234444
Q ss_pred cccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHH
Q 012109 324 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQ 403 (471)
Q Consensus 324 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~ 403 (471)
|..+++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++......... .-....+..
T Consensus 154 ------------Mt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~-~~g~l~V~a 220 (479)
T PRK07807 154 ------------MSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVD-AAGRLRVAA 220 (479)
T ss_pred ------------ccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhh-hhhccchHh
Confidence 8889999999999999999999999999999998899999999999998764431100 000111221
Q ss_pred HHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCe
Q 012109 404 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 455 (471)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~ 455 (471)
.. .......+.++.|.+.++.. .++|..+|.
T Consensus 221 ------------------av--~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 221 ------------------AV--GINGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred ------------------hh--ccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 11 22234678888888888876 566744443
No 85
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.5e-11 Score=102.99 Aligned_cols=115 Identities=14% Similarity=0.231 Sum_probs=92.0
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccC-----cccccCHHHHHhcCCCCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI-----NLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~-~~l-----~~~~~~v~~~~~~~~~~~ 412 (471)
+++++.+++++.++++.|.+.+++++||+|+ |+++|+++..++.+.+..... ... .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIM------- 73 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhh-------
Confidence 4678899999999999999999999999996 999999999999875532110 000 00012344433
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.++++.|.+++...+||+| ++++++|++|+.|++++
T Consensus 74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 74 ------TRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY 122 (122)
T ss_pred ------cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence 56799999999999999999999999999999 46999999999999864
No 86
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.3e-11 Score=103.68 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=94.1
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++++++.++.++.++++.|.+++.+++||+ +++| +++|+++..++++++...... .....+. ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~---~~~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVV---DGDR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEE---CCCC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence 567899999999999999999999999999 3457 899999999998765432110 0000000 000
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
....+.++|.+.+.++.+++++.+++++|.+++.+.+||+|++|+++|+|+.+|++.
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 111233447778999999999999999999999999999998899999999999875
No 87
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.35 E-value=2.5e-11 Score=101.43 Aligned_cols=115 Identities=19% Similarity=0.377 Sum_probs=93.5
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc-----CcccccCHHHHHhcCCCCCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-----INLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~-----l~~~~~~v~~~~~~~~~~~~ 413 (471)
++.++.+++++.+|++.|.+.+.+++||+|++|+++|+++..++.+......... ......++.+++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM-------- 73 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh--------
Confidence 4678899999999999999899999999998899999999999987543211000 001234566655
Q ss_pred cccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 414 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 414 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++..++++.++++.|.+++...+||+| + ++++|++|..||+++
T Consensus 74 -----~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~~ 121 (121)
T cd04584 74 -----TKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLRT 121 (121)
T ss_pred -----hCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhcC
Confidence 45788999999999999999999999999999 4 999999999999863
No 88
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.8e-11 Score=99.90 Aligned_cols=104 Identities=15% Similarity=0.399 Sum_probs=90.0
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
+++++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++... ...++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----------~~~~~~~~~------------- 58 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----------PDETVEEIM------------- 58 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----------ccccHHHhC-------------
Confidence 5778899999999999998888889999986 9999999999998521 023566665
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+|+..||++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIR 106 (107)
T ss_pred CCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhc
Confidence 45688899999999999999999999999999 5799999999999986
No 89
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.34 E-value=3.8e-11 Score=98.10 Aligned_cols=111 Identities=25% Similarity=0.486 Sum_probs=93.0
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++..+.++.++++.|.+.+.+.+||++++++++|+++.+|+........... ...+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~~~------------- 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP----LVTVGDVM------------- 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc----cccHHHHh-------------
Confidence 4667889999999999999988999999998899999999999998765432211 11144444
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+.+.+.+||+| ++++++|+++..|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRLVGIVTRSDILR 112 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHhhc
Confidence 45788999999999999999999999999999 4799999999999986
No 90
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=3.5e-11 Score=98.73 Aligned_cols=108 Identities=23% Similarity=0.454 Sum_probs=91.2
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++++++.++.++.+|++.|.+++...+||+ +++| +++|+++..++++.+.... .++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~~l~~~~~~~~-----------~~~~~~---- 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVV---DEDG---RLVGIVTSWDISKAVARDK-----------KSVEDI---- 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEE---CCCC---cEEEEEeHHHHHHHHhhCc-----------cCHHHh----
Confidence 467889999999999999999999999999 3457 8999999999987553210 123333
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++.++.+++++.++++.|.+++.+.+||++++|+++|+|++.|+.+
T Consensus 61 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 61 --------MTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred --------cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 6667889999999999999999999999999998899999999999864
No 91
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.33 E-value=2.6e-11 Score=98.67 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=86.7
Q ss_pred eEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccccCC
Q 012109 341 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQ 420 (471)
Q Consensus 341 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 420 (471)
+++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|+.+... .++.+++ ..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----------~~~~~~~-------------~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----------GDVVDYI-------------VR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----------cchhhhh-------------hc
Confidence 46789999999999999999999999997 99999999999986321 2344444 44
Q ss_pred cceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 421 RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 421 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
++.++.+++++.++++.|.+++...+||+| +|+++|+||..|+++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 688999999999999999999999999998 499999999999975
No 92
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=3e-11 Score=99.75 Aligned_cols=109 Identities=19% Similarity=0.361 Sum_probs=90.5
Q ss_pred ceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccc
Q 012109 250 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 329 (471)
Q Consensus 250 ~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~ 329 (471)
.+++.+++++.+|++.|.+++.+.++|+ +++| +++|+++..|+++.+..... ...++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~---d~~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~~~------ 63 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVV---DENG---RLLGTVTDGDIRRALLKGLS--------LDDPVSEV------ 63 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEE---CCCC---CEEEEEEcHHHHHHHhcCCC--------cCCCHHHh------
Confidence 4678999999999999999999999999 4557 89999999999876542210 12233333
Q ss_pred cccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 330 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 330 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++.++.+++++.++++.|.+++.+.+||++++|+++|+||.+|++.
T Consensus 64 ------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 64 ------MNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred ------hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 6677889999999999999999999999999998899999999999863
No 93
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=2.5e-11 Score=97.38 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=83.6
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++++.+++++.+|++.|.+++++.+||+ +++| +++|+++..|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~---d~~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVL---DDDG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEE---CCCC---CEEEEEEHHHHhcCC--------------------------
Confidence 56789999999999999999999999999 4556 899999999987411
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
.+.++.+++++.+++++|.+++.+++||++++|+++|+||++|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1567899999999999999999999999998899999999999875
No 94
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.33 E-value=1.7e-11 Score=125.56 Aligned_cols=112 Identities=18% Similarity=0.346 Sum_probs=98.5
Q ss_pred CCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC---CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCC
Q 012109 335 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 411 (471)
Q Consensus 335 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 411 (471)
.|.++++++.+++++.+++++|.+++++++||+|++ ++++|+|+.+|++.... ...++.++|
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~dvm------ 149 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSEVM------ 149 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHHhh------
Confidence 366788999999999999999999999999999987 79999999999975321 135678776
Q ss_pred CCcccccC-CcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 412 YSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 412 ~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
. .+++++++++++.++++.|.+++.+.+||+| ++|+++|+||+.||++.+
T Consensus 150 -------~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 150 -------TREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR 200 (450)
T ss_pred -------CCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence 3 3799999999999999999999999999999 689999999999999864
No 95
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.33 E-value=2.1e-11 Score=125.71 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=98.0
Q ss_pred CCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcC---CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCC
Q 012109 336 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 336 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
|.++++++.+++++.+++++|.+++++.+||+|+ +|+++|+||.+|+.... ..+.++.++|..
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~eIMt~----- 171 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSEVMTS----- 171 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHHHhcc-----
Confidence 5578899999999999999999999999999987 48999999999996532 114678888732
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
..+++++.+++++.+|++.|.++++..+|||| ++++++|+||++||++++
T Consensus 172 ------~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 172 ------DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVK 221 (505)
T ss_pred ------CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence 12388999999999999999999999999999 579999999999999876
No 96
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.32 E-value=1.2e-11 Score=127.14 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=94.0
Q ss_pred ceEecCCCcHHHHHHHHHhcCCCEEEEEcC---CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccc
Q 012109 340 LAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 416 (471)
Q Consensus 340 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~ 416 (471)
.+++.+++++.+|+++|.+++++.+||+|+ +|+++|+||..|+.... . ..+.++.++|..
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~------~~~~~V~dIMt~--------- 169 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M------SLDTKVKDFMTP--------- 169 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c------CCCCCHHHHhCC---------
Confidence 468999999999999999999999999996 58999999999996421 0 124678888732
Q ss_pred ccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 417 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 417 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.++++++.+++++.+|+++|.+++++.+|||| ++++++|+||+.||++.
T Consensus 170 --~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 170 --FEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH 218 (502)
T ss_pred --CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence 23788999999999999999999999999999 57999999999999875
No 97
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.32 E-value=1.1e-11 Score=96.80 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=61.8
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCEEeeCCCCCeeeCCCCCeee
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNT 103 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn 103 (471)
.++|+ |...|++|.|.|+|++|.. .+|.+. .+|.|++++. |.+|.|+|+|+|||.|+.||.++...-..+..-|
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~--~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~ 82 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD--EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTS 82 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeEC--CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccce
Confidence 47888 9999999999999998876 689884 4799999985 8888999999999999999999975534444433
No 98
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=4.1e-11 Score=98.67 Aligned_cols=110 Identities=20% Similarity=0.408 Sum_probs=91.5
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+.++.++.+|++.|.+.+.+.+||+ ++++ +++|+++..++++++..... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~---d~~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~----- 62 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVV---DPDE---RPIGIVTERDIVRAVAAGID--------LDTPVSEI----- 62 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEE---CCCC---CEEEEeeHHHHHHHHhccCC--------CccCHHHh-----
Confidence 46788999999999999999999999999 3456 89999999999887653211 11233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++..+.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus 63 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 63 -------MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred -------ccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 6678899999999999999999999999999998899999999999874
No 99
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=3.6e-11 Score=98.96 Aligned_cols=111 Identities=20% Similarity=0.395 Sum_probs=90.9
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+.++.++.+|++.|.+++.+.+||+ ++++ +++|+++..++++.+...... ....++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~---~~~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~~~~~----- 64 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVV---DDGG---RLVGIFSERDIVRKVALRGAS------ALDTPVSEI----- 64 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEE---CCCC---CEEEEEehHHHHHHHhhcCCC------ccccCHHHh-----
Confidence 46788999999999999999999999999 3456 899999999999876432111 001223333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+|+.+|+++
T Consensus 65 -------~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 65 -------MTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred -------cCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 6678899999999999999999999999999986 99999999999875
No 100
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.31 E-value=6.6e-11 Score=98.11 Aligned_cols=111 Identities=25% Similarity=0.458 Sum_probs=94.4
Q ss_pred CCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcc
Q 012109 336 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 415 (471)
Q Consensus 336 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~ 415 (471)
|...++++.++.++.+|+..|.++++..+||++. ++++|++|.+|+.+......... .++.+++
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~-----~~v~~v~---------- 68 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL-----LPVKEVM---------- 68 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc-----ccHHHhc----------
Confidence 4467899999999999999999999999999973 47999999999999876542210 1456655
Q ss_pred cccCCcceEeCCCCCHHHHHHHHHc-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 012109 416 ELRSQRCQMCLPSDTLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIVSLSDIF 466 (471)
Q Consensus 416 ~~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~l~Vvd~~~~-~liGiIs~~Dil 466 (471)
..++.++.+++++.++++.|.+ ++++++||++ +++ +++|++|.+|++
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~-~~~~~lvGivt~~di~ 117 (117)
T COG0517 69 ---TKPVVTVDPDTPLEEALELMVERHKIRRLPVVD-DDGGKLVGIITLSDIL 117 (117)
T ss_pred ---cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE-CCCCeEEEEEEHHHcC
Confidence 5589999999999999999999 7999999999 465 999999999974
No 101
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3.2e-11 Score=99.15 Aligned_cols=109 Identities=23% Similarity=0.443 Sum_probs=91.1
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.+++++.+|++.|.+.+...+||+ ++++ +++|+++..++++++..... ..++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~---~~~~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~----- 61 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVV---DGDG---HLVGLLTRDDLIRALAEGGP---------DAPVRGV----- 61 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEE---CCCC---cEEEEeeHHHHHHHHHhcCC---------CCcHHHH-----
Confidence 46788999999999999998999999999 3456 89999999999876643210 1233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++..+.+++++.++++.|.+++...+||++++|+++|++|.+|+..
T Consensus 62 -------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 62 -------MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred -------hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 6678899999999999999999999999999998799999999999864
No 102
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.31 E-value=2.5e-11 Score=125.70 Aligned_cols=114 Identities=22% Similarity=0.381 Sum_probs=100.0
Q ss_pred CCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCC
Q 012109 333 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 333 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
+++|..+++++.+++++.+++++|.+++++++||+|++++++|+|+.+|+..... ...++.++|
T Consensus 90 ~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~---------~~~~V~dim------- 153 (486)
T PRK05567 90 ESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD---------LSQPVSEVM------- 153 (486)
T ss_pred hhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc---------CCCcHHHHc-------
Confidence 3447789999999999999999999999999999999999999999999964311 124677766
Q ss_pred CcccccC-CcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 413 SPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 413 ~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
. ++++++.+++++.++++.|.+++++.+||+| ++|+++|+||.+||++.+
T Consensus 154 ------~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 154 ------TKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence 3 4789999999999999999999999999999 689999999999999765
No 103
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.30 E-value=3.9e-11 Score=97.95 Aligned_cols=100 Identities=23% Similarity=0.385 Sum_probs=87.5
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcC---CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 415 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~ 415 (471)
....+.+++++.++.+.|.+.+...+||+|+ +|+++|+|+.+|+...... +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------~m---------- 57 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------YI---------- 57 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------hc----------
Confidence 3567899999999999999988889999998 6899999999999875422 22
Q ss_pred cccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 416 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 416 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
..++.++.+++++.++++.|.+++.+.+||++ +|+++|+||+.||+++
T Consensus 58 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 58 ---DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA 105 (105)
T ss_pred ---cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence 34688999999999999999999999999997 5899999999999864
No 104
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.30 E-value=1.9e-11 Score=120.62 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=98.7
Q ss_pred CcccCCC--ceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccc
Q 012109 243 GKAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 320 (471)
Q Consensus 243 g~im~~~--~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v 320 (471)
+.+|.++ ++++++++++.+|++.|.+++...+||+ +++| +++|+++..|+.+.+.... ....++
T Consensus 200 ~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vv---d~~g---~~iG~vt~~dl~~~~~~~~--------~~~~~v 265 (321)
T PRK11543 200 HHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVC---DAQQ---QVQGVFTDGDLRRWLVGGG--------ALTTPV 265 (321)
T ss_pred HHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEecHHHHHHHHhCCC--------CcCCcH
Confidence 3468887 9999999999999999999999999999 4567 8999999999987653211 012234
Q ss_pred ccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 012109 321 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 385 (471)
Q Consensus 321 ~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~ 385 (471)
.++ |.+++.++.+++++.+|++.|.+++...+||+|++|+++|+||++|++++
T Consensus 266 ~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 266 NEA------------MTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred HHh------------cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 444 88889999999999999999999999999999988999999999999864
No 105
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.30 E-value=5.1e-11 Score=98.70 Aligned_cols=111 Identities=17% Similarity=0.360 Sum_probs=90.8
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+.+++++.+|++.|.+.+.+.+||+ ++++ +++|+++..|+++.+...... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~----- 63 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVV---DRDG---GVVGIITLPDLLRALEADEAG-------EPSAVDEV----- 63 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEE---cCCC---CEEEEEEHHHHHHHHhccccc-------ccccHHHh-----
Confidence 45678999999999999999999999999 3456 899999999998765421100 01123333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGivt~~dl~~ 384 (471)
|..++.++.+++++.+++++|.+++...+||+|++ |+++|+||.+|+++
T Consensus 64 -------~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 64 -------ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred -------ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 66788999999999999999999999999999877 79999999999875
No 106
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=6.5e-11 Score=102.43 Aligned_cols=126 Identities=21% Similarity=0.362 Sum_probs=92.0
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccC------cccccCHHHHHhc----
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI------NLSEMTIHQALQL---- 407 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~-~~l------~~~~~~v~~~~~~---- 407 (471)
+++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++.+..... ..+ .....++.++++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678999999999999999999999999997 999999999999886543211 000 0000111111000
Q ss_pred ----CCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 408 ----GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 408 ----~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
........++|..++.++.+++++.+++..|.+.+.+++||++ + ++++|+||..|++.
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 0000011224466899999999999999999999999999999 4 89999999999974
No 107
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.29 E-value=1.6e-11 Score=115.50 Aligned_cols=116 Identities=16% Similarity=0.282 Sum_probs=102.9
Q ss_pred ccCCCCC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 331 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 331 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
.+.++|. ....++.+++++.+..++..+.+.+++||+|+..+++|+||.+|+..... +.++..+|
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieKVM--- 255 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEKVM--- 255 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHHHh---
Confidence 4455576 56788999999999999999999999999999999999999999987432 35677766
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
++.++++.+.+++..+.++|.-.++.-+||+| ++.+++|+||++|+++.|.
T Consensus 256 ----------tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 256 ----------TKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred ----------ccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHHH
Confidence 77899999999999999999999999999999 6899999999999999874
No 108
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.29 E-value=6.9e-11 Score=96.25 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=88.0
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.++.++.+|++.|.+++.+.+||+ +++| +++|+++..|+++... .++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~---d~~g---~~~Giv~~~dl~~~~~--------------~~~~~~----- 56 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVV---DADG---QPLGFVTRREAARASG--------------GCCGDH----- 56 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEE---CCCC---CEEEEEeHHHHHHhcc--------------cchhhh-----
Confidence 46788999999999999999999999999 4567 8999999999985321 112222
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+|+.++++.
T Consensus 57 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 57 -------AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred -------cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 6667788999999999999999999999999998899999999999875
No 109
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.29 E-value=3.2e-11 Score=123.30 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=95.9
Q ss_pred CCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCc
Q 012109 335 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSP 414 (471)
Q Consensus 335 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~ 414 (471)
+|.++++++.+++++.+++++|.+++++.+||+| +++++|+||.+|+.... ...++.++|
T Consensus 93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~----------~~~~V~dIM--------- 152 (475)
T TIGR01303 93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD----------RFTQVRDIM--------- 152 (475)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC----------CCCCHHHHc---------
Confidence 3677889999999999999999999999999988 47999999999984321 124677766
Q ss_pred ccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 415 YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 415 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
+.+++++.+++++.+|+++|.+++++++||+| ++++++|+||.+||+++.
T Consensus 153 ----t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 153 ----STDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRAT 202 (475)
T ss_pred ----cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHH
Confidence 56899999999999999999999999999999 579999999999999864
No 110
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.8e-11 Score=99.46 Aligned_cols=114 Identities=18% Similarity=0.337 Sum_probs=89.5
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++++.+++++.+|++.|.+++++.+||+ ++++ +++|+++..++++++........ ..+...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~v~~~----- 68 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVL---DKEG---KYVGTISLTDILWKLKGLENLDL--ERLVDLKVIDV----- 68 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeE---CCCC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCcHHHH-----
Confidence 46789999999999999999999999999 3566 89999999999987643211100 00002233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++.++.+++++.++++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 69 -------~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 69 -------MNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred -------hcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 7778999999999999999998755 5999998899999999999875
No 111
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.29 E-value=1.4e-10 Score=111.91 Aligned_cols=125 Identities=11% Similarity=0.143 Sum_probs=100.2
Q ss_pred ccCCCCcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcc
Q 012109 238 QIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 315 (471)
Q Consensus 238 ~~~~~g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~ 315 (471)
.+..++.+|.+ +++++.++.++.++++.+.+++.+++||++ ++.+ +++|+++.+|++.++.... .
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~--~~~d---~iiGiv~~kDll~~~~~~~-~------- 131 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKD---HIEGILMAKDLLPFMRSDA-E------- 131 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEec--CCCC---cEEEEEEHHHHHhHhhccC-C-------
Confidence 34556678987 699999999999999999999999999994 2335 7999999999986542110 0
Q ss_pred cccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 316 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 316 ~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
...+.++ |.+ ++++.+++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+...
T Consensus 132 -~~~l~~l------------~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 132 -AFSMDKV------------LRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred -cCCHHHH------------cCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 1112333 544 45899999999999999999999999999989999999999999977553
No 112
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=6e-11 Score=100.14 Aligned_cols=124 Identities=17% Similarity=0.266 Sum_probs=91.4
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
.++++.+++++.+|++.|.+++++.+||+ +++| +++|+++..|+++......... .........+.. .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~---d~~~---~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~-~- 69 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVV---DEKG---KLIGNISASDLKGLLLSPDDLL----LYRTITFKELSE-K- 69 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEE---CCCC---cEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhh-h-
Confidence 46789999999999999999999999999 3457 8999999999987653221100 000000000000 0
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
.......|..++.++.+++++.+|+++|.+++.+++||+|++++++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 00111236678899999999999999999999999999998899999999999875
No 113
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.28 E-value=1.7e-11 Score=103.32 Aligned_cols=113 Identities=12% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++++++.++.++.+|++.|.+++++.+||+ ++++ +++|+++..++++.+..... ....++.++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vv---d~~~---~~~Gii~~~dl~~~~~~~~~-------~~~~~v~~i---- 64 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVV---DESG---KILGMVTLGNLLSSLSSGKV-------QPSDPVSKA---- 64 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEE---cCCC---CEEEEEEHHHHHHHHHHhcc-------CCCCcHHHH----
Confidence 357889999999999999999999999999 3556 79999999999876543211 112345555
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHH---------hcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLV---------QAQVSSIPIVDDNDSLLDIYCRSDITAL 385 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~g~lvGivt~~dl~~~ 385 (471)
|.+++.++.+++++.++.+++. +.+...+||++++|+++|+||.+|++++
T Consensus 65 --------m~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 65 --------LYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --------hhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 8889999999999999999653 3356788899888999999999999875
No 114
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=6.6e-11 Score=98.55 Aligned_cols=113 Identities=15% Similarity=0.258 Sum_probs=89.1
Q ss_pred CceEecCCCcHHHHHHHHHhcC-CCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..|+.++......... ....++.++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~v~~~~------------ 67 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRAL-YGKKPVSEVM------------ 67 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHH-HcCCcHHHhc------------
Confidence 4567889999999999998876 889999998 999999999999875542100000 1123566655
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCC---EEEEEeCCCCeEEEEEehHHHHH
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVR---RLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~---~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++.+++++.++++.|.+++.+ ..+||+ ++|+++|+||..|+++
T Consensus 68 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 68 -DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR 118 (119)
T ss_pred -CCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence 56799999999999999999999864 346888 4799999999999986
No 115
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=4.3e-11 Score=98.95 Aligned_cols=109 Identities=14% Similarity=0.276 Sum_probs=87.5
Q ss_pred CceecCCCCCHHHHHHHHHhCC-ccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~-~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++.++.+++++.+|++.|.+++ .+.+||+ ++++ +++|+++..|+++...... ...++.++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~~---- 62 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVV---DNEG---RYVGIISLADLRAIPTSQW---------AQTTVIQV---- 62 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEE---cCCC---cEEEEEEHHHHHHHHHhhc---------cccchhhh----
Confidence 5678899999999999997775 8899999 3456 7999999999987653211 01233333
Q ss_pred cccccCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.. +++++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 63 --------~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 63 --------MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred --------hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 432 3568999999999999999999999999998899999999999864
No 116
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=5e-11 Score=100.23 Aligned_cols=119 Identities=22% Similarity=0.407 Sum_probs=92.5
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCC----Cccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS----LPILKLPICAIP 324 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~----~~~~~~~v~~~~ 324 (471)
++.++.++.++.+|+++|.+.+...+||++ +++| +++|+++..++++++.......... ......++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d--~~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~---- 72 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVD--EGTG---KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPV---- 72 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEe--CCCC---EEEEEEEHHHHHHHhhccchhccccccccchhhhcCH----
Confidence 567889999999999999999999999993 2237 8999999999998765321110000 00011122
Q ss_pred ccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 325 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 325 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
.++|.++++++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 73 --------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 73 --------RSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred --------HHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 2336678999999999999999999999999999997799999999999975
No 117
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.27 E-value=3.3e-11 Score=119.18 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=96.7
Q ss_pred CcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccc
Q 012109 243 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 320 (471)
Q Consensus 243 g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v 320 (471)
+.+|.+ +++++.+++++.+|++.|.+++.+.+||+ +++| +++|++|..|+.+.+.... .....++
T Consensus 205 ~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVv---d~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~~v 271 (326)
T PRK10892 205 SDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVIC---DDNM---KIEGIFTDGDLRRVFDMGI-------DLRQASI 271 (326)
T ss_pred HHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEE---cCCC---cEEEEEecHHHHHHHhcCC-------CcccCCH
Confidence 457876 89999999999999999999998888888 4567 8999999999986443210 0112334
Q ss_pred ccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 012109 321 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 385 (471)
Q Consensus 321 ~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~ 385 (471)
.++ |.++++++.+++++.+|+++|.+++++++||++ +|+++|+||++|+++.
T Consensus 272 ~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 272 ADV------------MTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred HHh------------cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 444 888999999999999999999999999999997 6899999999999874
No 118
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.27 E-value=2.1e-10 Score=117.34 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=95.8
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
+|.++++++.+++++.+|+++|.+++++.+||++ ++ +++|++|.+|+... . ...++.++
T Consensus 93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~------~-------~~~~V~dI- 151 (475)
T TIGR01303 93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV------D-------RFTQVRDI- 151 (475)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC------C-------CCCCHHHH-
Confidence 5778899999999999999999999999999983 35 89999999997421 0 01234444
Q ss_pred ccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 325 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 325 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++....
T Consensus 152 -----------Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 152 -----------MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred -----------ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 88899999999999999999999999999999988999999999999986644
No 119
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6.5e-11 Score=99.05 Aligned_cols=120 Identities=21% Similarity=0.424 Sum_probs=92.2
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++++.+++++.+|++.|.+.+++.+||+ +++| +++|+++..++++++........ .... ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~---~~~~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~-~~~~~~----- 67 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVV---NEDG---KLVGLLTQRDLLRAALSSLSDNG--EESL-TKERDV----- 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEE---CCCC---CEEEEEEHHHHHHHhcccccccc--cccc-ccccCc-----
Confidence 56789999999999999999999999999 3456 89999999999987643211100 0000 000111
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
.+.++|..++..+.+++++.+++++|.+.+.+.+||++++|+++|++|..|++.
T Consensus 68 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 68 --PVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred --CHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 122336778899999999999999999999999999998899999999999875
No 120
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.27 E-value=3.7e-11 Score=115.44 Aligned_cols=112 Identities=17% Similarity=0.301 Sum_probs=95.3
Q ss_pred ccCCCCCCC-ceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCC
Q 012109 331 KIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 409 (471)
Q Consensus 331 ~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~ 409 (471)
+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+...... ....++.+++
T Consensus 156 ~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~-----~~~~~v~~im---- 226 (268)
T TIGR00393 156 KVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG-----SLKSEVRDFM---- 226 (268)
T ss_pred hHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC-----cccCcHHHhC----
Confidence 345568777 899999999999999999999999999998899999999999988654221 1135677766
Q ss_pred CCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEe
Q 012109 410 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS 461 (471)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs 461 (471)
.+++.++.+++++.+|++.|.+++..++||+| ++|+++|+|+
T Consensus 227 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~ 268 (268)
T TIGR00393 227 ---------TLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH 268 (268)
T ss_pred ---------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence 55788999999999999999999999999999 5789999985
No 121
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=7.1e-11 Score=97.12 Aligned_cols=109 Identities=15% Similarity=0.302 Sum_probs=89.9
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+++++++.+|++.|.+++.+.+||+ +++| +++|+++..+++.+..... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~---d~~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~~~----- 62 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVK---DNEE---KLKGVVTFTDILDLDLFES--------FLEKKVFNI----- 62 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEE---cCCC---CEEEEEehHHhHHHHhhcc--------cccCcHHHH-----
Confidence 46788999999999999999999999999 3556 8999999999986543210 012233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++.++.+++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 63 -------VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred -------hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 6778899999999999999999999999999997 99999999999863
No 122
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.27 E-value=1.1e-10 Score=95.43 Aligned_cols=106 Identities=22% Similarity=0.373 Sum_probs=89.5
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+.++.++.+|++.|.+++...+||+ ++++ +++|+++..|+++.... ..++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~---d~~~---~~~G~v~~~dl~~~~~~------------~~~v~~~----- 59 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVV---DKDN---KLLGIVSLESLEQAYKE------------AKSLEDI----- 59 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEE---cCCC---cEEEEEEHHHHHHHhhc------------CCcHhHh-----
Confidence 56788999999999999999999999999 3456 89999999999865321 1123333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|...+.++.+++++.++++.|.+++..++||++++|+++|++|.+|+++
T Consensus 60 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 60 -------MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred -------hcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 6667889999999999999999999999999998899999999999874
No 123
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.27 E-value=4e-11 Score=123.19 Aligned_cols=115 Identities=13% Similarity=0.227 Sum_probs=98.6
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHh-----cCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHh
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ 406 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~ 406 (471)
++++|.++++++.++.++.++++.|.+ +....++|+|++++++|+|+.+|++... .+.++.++|
T Consensus 133 vg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----------~~~~v~~im- 201 (449)
T TIGR00400 133 AGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----------PEEILSSIM- 201 (449)
T ss_pred HHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----------CCCcHHHHh-
Confidence 445588899999999999999999975 4567889999889999999999987521 124677776
Q ss_pred cCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 407 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++++++++.+|++.|.+++...+|||| ++|+++|+||.+|+++.+.
T Consensus 202 ------------~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 202 ------------RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred ------------CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence 45788999999999999999999999999999 5899999999999998764
No 124
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.26 E-value=1.2e-10 Score=95.60 Aligned_cols=108 Identities=23% Similarity=0.423 Sum_probs=90.1
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++.+.+++++.+|++.|.+++++.+||+ ++ + +++|+++..++++...... . ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~-~---~~~G~v~~~~l~~~~~~~~-~--------~~~v~~~----- 60 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVV---DD-G---KLVGIVTLSDIAHAIARGL-E--------LAKVKDV----- 60 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEe---eC-C---EEEEEEEHHHHHHHHhccc-c--------ccCHHHH-----
Confidence 56789999999999999999999999999 34 7 8999999999987643211 0 1223333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++.++.+++++.++++.|.+.+...+||++++|+++|+|+..|+++
T Consensus 61 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 61 -------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred -------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 6678899999999999999999999999999998899999999999874
No 125
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.2e-11 Score=98.30 Aligned_cols=112 Identities=21% Similarity=0.344 Sum_probs=90.9
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..++++.+....... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---~~~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~v~~~----- 65 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVV---DDNG---NLVGFLSEQDCLKQLLESSYHC-----DGVATVRDI----- 65 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEE---CCCC---eEEEEeehHHHHHHhhhhhhcc-----CCCccHHHH-----
Confidence 46788999999999999999999999999 4566 8999999999997664321100 011233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++..+.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus 66 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 66 -------MTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred -------hccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 6667889999999999999999999999999997 99999999999975
No 126
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.5e-10 Score=94.44 Aligned_cols=104 Identities=21% Similarity=0.409 Sum_probs=88.6
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
++.++..+.++.++++.|.+.+.+.+||++++++++|+++..++..... ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~~~------------- 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLALLM------------- 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHHHh-------------
Confidence 4677888999999999999889999999998899999999999975211 12345544
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..++.++..++++.++++.|.+++.+.+||+| + ++++|+||..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-D-GKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 45788899999999999999999999999999 3 79999999999975
No 127
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=1e-10 Score=96.40 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=90.1
Q ss_pred ceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccc
Q 012109 250 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 329 (471)
Q Consensus 250 ~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~ 329 (471)
+..+.+++++.+|++.|.+.+.+.+||+ ++++ +++|+++..++++.+..... +...++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv---d~~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~~------ 63 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVV---DDKK---RLVGIITRYDVLSYALESEE-------LKDAKVREV------ 63 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEE---cCCC---CEEEEEEHHHHHHhhhhhhh-------hcCCcHHHh------
Confidence 5678999999999999999999999999 3456 89999999999875432110 111233333
Q ss_pred cccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 330 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 330 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++.++..++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 64 ------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 64 ------MNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred ------ccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 6678899999999999999999999999999998899999999999864
No 128
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.26 E-value=2.1e-10 Score=116.09 Aligned_cols=160 Identities=9% Similarity=0.085 Sum_probs=117.5
Q ss_pred ccCCCCcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcc
Q 012109 238 QIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 315 (471)
Q Consensus 238 ~~~~~g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~ 315 (471)
.+-.+.++|++ ++++++.++++.++++.+.+++++++||++ ++.+ +++|+++.+|++.++.. .
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~--~~~d---~ivGiv~~kDll~~~~~---~------- 253 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYK--ETID---NITGVLYIKDLLPHLNK---K------- 253 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEc--CCCC---ceEEEEEHHHHHhHhcc---C-------
Confidence 34455678986 799999999999999999999999999994 2334 79999999999865421 0
Q ss_pred cccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCc
Q 012109 316 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 395 (471)
Q Consensus 316 ~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~ 395 (471)
..++.++ |+ ++.++++++++.++++.|.+++.+..+|+|+.|..+|+||..|++..+........+
T Consensus 254 -~~~l~~~------------~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d 319 (408)
T TIGR03520 254 -NFDWQSL------------LR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFD 319 (408)
T ss_pred -CCCHHHH------------cC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCC
Confidence 0112222 43 578999999999999999999999999999999999999999999977543221111
Q ss_pred ccccCHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHc
Q 012109 396 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLAN 440 (471)
Q Consensus 396 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~ 440 (471)
.. .+.+.. .......+....++.++.+.|--
T Consensus 320 ~~----~~~i~~----------~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 320 DE----DLIYSK----------IDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred cC----ccceEE----------eCCCeEEEEeccCHHHHHHHhCC
Confidence 00 111110 12345677778888888887743
No 129
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.25 E-value=5.9e-11 Score=122.37 Aligned_cols=113 Identities=22% Similarity=0.224 Sum_probs=97.0
Q ss_pred CCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC---CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCC
Q 012109 336 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 336 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
|..+++++.+++++.+++++|.+++++.+||+|++ ++++|+|+.+|+.... . .+.++.++|..
T Consensus 102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~--------~~~~V~diMt~----- 167 (495)
T PTZ00314 102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-D--------KSTPVSEVMTP----- 167 (495)
T ss_pred cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-c--------CCCCHHHhhCC-----
Confidence 56678999999999999999999999999999873 7999999999997321 1 13578887722
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
..+++++.+++++.+|+++|.+++++.+||+| ++++++|+||++||++..
T Consensus 168 ------~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 168 ------REKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR 217 (495)
T ss_pred ------cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence 12789999999999999999999999999999 579999999999999763
No 130
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=1.3e-10 Score=95.39 Aligned_cols=108 Identities=19% Similarity=0.389 Sum_probs=90.5
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++++++.++.++.+|++.|.+++...+||++ + + +++|+++..++++.+.... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~~~~---- 61 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPVKDY---- 61 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcHHHH----
Confidence 4678899999999999999999999999993 4 6 8999999999987553211 12334444
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++..+.+++++.+++++|.+++.+.+||++ +|+++|+||..|+++
T Consensus 62 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 62 --------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred --------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 677889999999999999999999999999998 789999999999874
No 131
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=9e-11 Score=96.08 Aligned_cols=105 Identities=18% Similarity=0.311 Sum_probs=89.6
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.+++++.+|++.|.+++.+.+||+ +++| +++|+++..+++... ...++.++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~~l~~~~-------------~~~~v~~~----- 58 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVV---DEKN---KVVGIVTSKDVAGKD-------------PDTTIEKV----- 58 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEE---CCCC---eEEEEecHHHHhccc-------------ccccHHHH-----
Confidence 57889999999999999999999999999 4567 899999999987421 01234443
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 59 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 59 -------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 6667889999999999999999999999999998899999999999875
No 132
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=1.3e-10 Score=96.25 Aligned_cols=110 Identities=22% Similarity=0.361 Sum_probs=87.0
Q ss_pred CceecCCCCCHHHHHHHHHhCC-ccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~-~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++..+.++.++.+|++.|.+++ ...++|. + ++ +++|+++..|+++++..... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~-~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~~---- 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVV---E-KG---RLLGIFTERDIVRLTAIGKD-------LSDLPIGEV---- 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEc---C-CC---cEEEEEeHHHHHHHHhcCCC-------ccccCHHHh----
Confidence 4567899999999999998888 5667777 2 36 89999999999876542110 011233333
Q ss_pred cccccCCCCCCCceEecCC--CcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPS--ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++.++.++ +++.++++.|.+++...+||+|++|+++|+||++|+++
T Consensus 64 --------~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 64 --------MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred --------cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 66678888877 68999999999999999999998899999999999875
No 133
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.25 E-value=1.2e-10 Score=95.63 Aligned_cols=108 Identities=16% Similarity=0.272 Sum_probs=88.8
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCC-CCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQD-GSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~-g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
+++++.++.++.+|++.|.+++.+.+||++ ++ + +++|+++..+++++...... ..++..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~---~~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~---- 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYD---GDLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDL---- 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEEC---CCCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHH----
Confidence 467899999999999999999999999993 44 7 89999999999987642110 0122222
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
+ .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus 63 --------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 --------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred --------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 3 35788999999999999999999999999998899999999999864
No 134
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.25 E-value=1.4e-10 Score=95.57 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=90.2
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.+++++.+|++.|.+++.+.+||++ + + +++|+++..++++.+...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~i----- 63 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGLD------PESTLVERV----- 63 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCCC------cCcCCHHHh-----
Confidence 467889999999999999999999999993 3 6 899999999998654421100 001234443
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++.++.+++++.++++.|.+++..++||++++|+++|+|+.+|++.
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 64 -------MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred -------cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 6778889999999999999999999999999998899999999999864
No 135
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.24 E-value=1.2e-10 Score=95.98 Aligned_cols=111 Identities=22% Similarity=0.418 Sum_probs=91.5
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.+++++.++++.|.+.+.+.+||+ +++| +++|+++..++++.+...... ...++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---d~~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~v~~~----- 64 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVV---DEDG---RLVGIFTDGDLRRALEKGLDI-------LTLPVADV----- 64 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEE---cCCC---CEEEEechHHHHHHHhccCcc-------ccCCHHHh-----
Confidence 45678999999999999998889999999 3456 899999999999876532211 01233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++.++.+++++.++++.|..++...+||++++|+++|+|+..||++
T Consensus 65 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 65 -------MTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred -------hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 6777889999999999999999999999999998899999999999975
No 136
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=5.8e-11 Score=101.51 Aligned_cols=129 Identities=21% Similarity=0.376 Sum_probs=92.3
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCC-CCcccccccccc--c
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-SLPILKLPICAI--P 324 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~-~~~~~~~~v~~~--~ 324 (471)
+++.++.+++++.+|++.|.+++.+++||+ ++++ +++|+++..++++++......... ..... ...... .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv---d~~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 74 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVV---DDDG---RLVGIVSEGDLLRRAELGTERRRARWLDLL-AGAEELAAA 74 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEE---CCCC---CEEEEeeHHHHHHHhcccCcchhhhHHHHh-cchHHHHHH
Confidence 467889999999999999999999999999 4556 899999999998765432110000 00000 000000 0
Q ss_pred -ccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 325 -VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 325 -i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
.......+.++|.+++..+.+++++.++++.|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 75 ~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 75 FVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 00000112334777889999999999999999999999999999 899999999999875
No 137
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.24 E-value=1.6e-10 Score=94.74 Aligned_cols=109 Identities=20% Similarity=0.401 Sum_probs=90.3
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+.++.++.+|++.|.+++.+.+||++ + + +++|+++..+++++...... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~----- 61 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD---D-G---RPLGIVTERDILRLLASGPD--------LQTPVGEV----- 61 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEeHHHHHHHHhcCCC--------CCcCHHHh-----
Confidence 467889999999999999999999999993 3 6 89999999999876643210 12233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++..+.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 62 -------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 62 -------MSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred -------cCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 6678889999999999999999999999999998899999999999875
No 138
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.24 E-value=1.4e-10 Score=96.66 Aligned_cols=120 Identities=19% Similarity=0.294 Sum_probs=91.9
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.++.++.+|++.|.+++...+||++ + + +++|+++..+++++.......... .+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~i~~~~l~~~~~~~~~~~~~---------~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVD---R-G---KLVGIVTDRDLKLASPSKATTLDI---------WELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEec---C-C---eEEEEEeHHHHHHhhhcccccccc---------hhhhhhhc
Confidence 467889999999999999999999999993 3 6 899999999999876432111000 00000000
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 01233447778999999999999999999999999999998899999999999975
No 139
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.24 E-value=1.2e-10 Score=95.92 Aligned_cols=111 Identities=26% Similarity=0.384 Sum_probs=91.3
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.+++++.+|++.|.+++++.+||+ ++++ +++|+++..++++++...... -..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~---~~~G~v~~~~l~~~~~~~~~~-------~~~~v~~~----- 63 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVV---DDDG---RLVGIVSLDDIREILFDPSLY-------DLVVASDI----- 63 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEE---CCCC---CEEEEEEHHHHHHHHhccccc-------ccEEHHHh-----
Confidence 56789999999999999999999999999 3456 899999999998765321100 01233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~dl~~ 384 (471)
|.+++.++.+++++.++++.|...+.+.+||+++ +++++|+++..|++.
T Consensus 64 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 64 -------MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred -------ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 7778999999999999999999999999999987 789999999999874
No 140
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=9.4e-11 Score=99.78 Aligned_cols=127 Identities=18% Similarity=0.311 Sum_probs=92.0
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCC-CCc--ccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-SLP--ILKLPICAIPV 325 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~-~~~--~~~~~v~~~~i 325 (471)
+++++.+++++.+|++.|.+++++++||+ ++++ +++|+++..++++++......... ... .+.. .+...
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~---d~~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 73 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVV---DNEG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD--ESKIK 73 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceE---CCCC---CEEEEEeHHHHHHHHhccCCcccccccccccccc--hHHHH
Confidence 56789999999999999999999999999 3456 899999999999876532111000 000 0000 00000
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 326 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 326 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
......+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 74 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 74 KLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 00000233447778899999999999999999999999999997 99999999999875
No 141
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=1.4e-10 Score=99.25 Aligned_cols=129 Identities=15% Similarity=0.217 Sum_probs=92.5
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhcccc-CCCCccc---cccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC-SSSLPIL---KLPICAIP 324 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~-~~~~~~~---~~~v~~~~ 324 (471)
++.++.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..++++++....... ......+ ..+-....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~---d~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVV---DDNG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEE---CCCC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 35678999999999999999999999999 4567 8999999999998764221110 0000000 00000000
Q ss_pred ccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 325 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 325 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
.......++++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 000111234457778899999999999999999999999999986 99999999999875
No 142
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.1e-10 Score=117.49 Aligned_cols=160 Identities=16% Similarity=0.252 Sum_probs=127.4
Q ss_pred ecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHhC-----
Q 012109 195 VLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN----- 269 (471)
Q Consensus 195 ilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~----- 269 (471)
=++.+|.+..+..+ +.+...+.+....-..........+|+++.+|.+|+.+++++.++.|+.+|+..+.+.
T Consensus 90 ~m~~Dd~~~ll~el---p~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e 166 (451)
T COG2239 90 ELDIDDAADLLDEL---PDEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAE 166 (451)
T ss_pred hcCcHHHHHHHHhC---CHHHHHHHHHhCCHHHHHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhccccc
Confidence 34555555555443 3334445555555555666777889999999999999999999999999999999854
Q ss_pred CccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccccccCCCCCCCceEecCCCcH
Q 012109 270 EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASL 349 (471)
Q Consensus 270 ~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l 349 (471)
.+..+.|+ +.++ ++.|+++.++++.. .-..+++++ |.+.++++.+++..
T Consensus 167 ~~~~lyVv---D~~~---~L~Gvvsl~~Ll~a-------------~~~~~i~~i------------m~~~~~~V~~~~dq 215 (451)
T COG2239 167 TIYYLYVV---DEKG---KLLGVVSLRDLLTA-------------EPDELLKDL------------MEDDVVSVLADDDQ 215 (451)
T ss_pred ccceEEEE---CCcc---ceEEEeeHHHHhcC-------------CcHhHHHHH------------hcccceeecccCCH
Confidence 46788999 4666 89999999998731 112344444 88889999999999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 350 SAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 350 ~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+++.+++.+++.-++||||++++++|+||..|++..+..
T Consensus 216 eevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 216 EEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred HHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999987654
No 143
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.22 E-value=2.2e-10 Score=93.98 Aligned_cols=109 Identities=20% Similarity=0.339 Sum_probs=90.0
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++.+.+++++.+|++.|.+.+.+.+||++ + + +++|+++..|+++........ ..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~--------~~~~~------- 59 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGREA--------TVLVG------- 59 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCccc--------ccCHH-------
Confidence 577899999999999999999999999993 3 6 899999999998755321100 01222
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
++|.+++.++.+++++.++++.|.+++.+.+||++++|+++|++|..|+++
T Consensus 60 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 60 -----DVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -----HhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 226778999999999999999999999999999998899999999999875
No 144
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.22 E-value=1.7e-10 Score=94.84 Aligned_cols=109 Identities=21% Similarity=0.400 Sum_probs=89.6
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.++.++.+|++.|.+++.+.+||++ + + +++|+++..++++.+.... . ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~-~------~~~~~i~~~----- 62 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD---D-G---RLVGIVTDRDLRNRVVAEG-L------DPDTPVSEV----- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHhccC-C------CccCCHHHH-----
Confidence 567889999999999999999999999993 3 6 8999999999987543210 0 011233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..+++.+.+++++.++++.|.+++.+++||+++ |+++|++|.+|+++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 63 -------MTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred -------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 6678899999999999999999999999999986 99999999999875
No 145
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.22 E-value=1.5e-10 Score=119.82 Aligned_cols=117 Identities=14% Similarity=0.239 Sum_probs=96.0
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCC
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 411 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 411 (471)
++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+++.+..... ..+.++.++|
T Consensus 337 v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~im------ 406 (454)
T TIGR01137 337 VKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA----NPDDAVSKVM------ 406 (454)
T ss_pred HHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC----CcCCCHHHhc------
Confidence 455588899999999999999999999999999999988999999999999986543211 1124677766
Q ss_pred CCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 412 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 412 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
.+++.++++++++.++++.|.+++ .+||+ ++++++|+||++||+++|
T Consensus 407 -------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~-~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 407 -------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVT-EEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred -------CCCCeEECCcCcHHHHHHHHHHCC---eeEEE-ECCEEEEEEEHHHHHHhh
Confidence 457889999999999999998864 34555 269999999999999986
No 146
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.7e-10 Score=97.55 Aligned_cols=118 Identities=18% Similarity=0.362 Sum_probs=90.5
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhcc-ccCCC-----Cccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR-HCSSS-----LPILKLPICA 322 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~-~~~~~-----~~~~~~~v~~ 322 (471)
+++.+.+++++.+|+++|.+.+.+.+||+ ++++ +++|+++..++.+++..... ..... ......++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv---~~~~---~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVV---DDNG---KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPV-- 73 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEE---CCCC---cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcH--
Confidence 46788999999999999999999999999 4557 89999999999876532110 00000 00111122
Q ss_pred ccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 012109 323 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITA 384 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~dl~~ 384 (471)
.++|.++++++.+++++.+++++|.+.+...+||++ ++|+++|+||.+|+++
T Consensus 74 ----------~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 74 ----------YDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ----------HHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 334777899999999999999999999999999984 4689999999999875
No 147
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.22 E-value=7.6e-11 Score=117.77 Aligned_cols=119 Identities=19% Similarity=0.322 Sum_probs=102.4
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccc
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 323 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~ 323 (471)
.++..+++++++..|+.+|.+.|.++|++.+.++ ++++ ...||+|.+|+...+....+. ...+++++
T Consensus 153 ~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l---~~~~---~~~GIvT~~dl~~~v~~~g~~-------~~~~V~ev 219 (610)
T COG2905 153 EVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVL---DDSG---PLLGIVTRKDLRSRVIADGRS-------KTQKVSEV 219 (610)
T ss_pred HHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEE---cCCC---CccceeehHHHHHHHHhcCCC-------cccchhhh
Confidence 3678899999999999999999999999988888 3556 799999999999887653222 23444444
Q ss_pred cccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 324 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 324 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
|+.+++++...+.+.+|+-+|.+++++++||++ +|+++|+||..||+++...
T Consensus 220 ------------mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 220 ------------MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred ------------hccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 999999999999999999999999999999996 7999999999999987653
No 148
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=2.3e-10 Score=94.12 Aligned_cols=110 Identities=15% Similarity=0.351 Sum_probs=88.0
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
.+.++.+++++.+|++.|.+++...++|. + +| +++|+++..++++++...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~---~-~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~----- 63 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVM---E-RG---ELVGLLTFREVLQAMAQHGAG------VLDTTVRAI----- 63 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEe---e-CC---EEEEEEEHHHHHHHHHhcCCc------hhcCCHHHH-----
Confidence 35778999999999999988888777776 2 36 899999999999876432100 011233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++.++.+++++.++++.|.+++..++||++ +|+++|+||.+|+++
T Consensus 64 -------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 64 -------MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred -------hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 667788999999999999999999999999998 589999999999875
No 149
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.21 E-value=2.6e-10 Score=94.32 Aligned_cols=109 Identities=19% Similarity=0.325 Sum_probs=86.8
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.+++++.+|++.|.+++...+||++..+.+| +++|+++..+++... . . ..++.++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-~---~--------~~~v~~~----- 62 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-D---S--------ETPLSEV----- 62 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-c---c--------CCCHHHh-----
Confidence 467889999999999999999999999994211257 899999999986321 0 0 1223333
Q ss_pred ccccCCCCCCCceEecC--CCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRP--SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|......+.. ++++.++++.|.+++...+||++++|+++|+||.+|+++
T Consensus 63 -------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 63 -------MTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred -------cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 6666666755 999999999999999999999998899999999999874
No 150
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=2.8e-10 Score=93.69 Aligned_cols=110 Identities=21% Similarity=0.356 Sum_probs=88.9
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHH-HhhhccccCCCCcccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC-VCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~-l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++.++.+++++.+|++.|.+++.+.+||++ + | +++|+++..+++.. +.... .....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~-------~~~~~~~~~~---- 63 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGR-------DPDTTTVGDV---- 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccC-------CcccCCHHHh----
Confidence 567899999999999999999999999993 3 7 89999999998732 22110 0001123333
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|...+.++.+++++.++++.|...+.+++||++++|+++|+++..|+++
T Consensus 64 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 64 --------MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred --------ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 6778889999999999999999999999999998899999999999875
No 151
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.6e-10 Score=96.72 Aligned_cols=118 Identities=19% Similarity=0.354 Sum_probs=90.9
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhc-cccCC-CCccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF-RHCSS-SLPILKLPICAIPVG 326 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~-~~~~~-~~~~~~~~v~~~~i~ 326 (471)
+++++.+++++.+|++.|.+++.+.+||+ +.+| +++|+++..++++...... ..... .......+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~------- 68 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVV---QKAG---ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPT------- 68 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEE---CCCC---cEEEEEEcHHHHhhccccccccchhhhhhhccCc-------
Confidence 56789999999999999999999999999 3557 8999999999986532110 00000 00001112
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 327 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 327 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
+.++|.+++..+..++++.++++.|.+++.+.+||++++|+++|++|.+|+++
T Consensus 69 -----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 69 -----VEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred -----HHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 22336778899999999999999999999999999998899999999999875
No 152
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.20 E-value=3.3e-10 Score=93.86 Aligned_cols=112 Identities=27% Similarity=0.512 Sum_probs=94.2
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
.|.+.++++.++.++.+|+..|.++++..+||++ .+ +++|++|.+|+++++....... .++..
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~----~~---~l~Giit~~di~~~~~~~~~~~--------~~v~~-- 66 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVD----DG---KLVGIITERDILRALAAGGKRL--------LPVKE-- 66 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHhccCCcc--------ccHHH--
Confidence 3557899999999999999999999999999993 22 6999999999998876542210 02333
Q ss_pred ccccccccCCCCCCCceEecCCCcHHHHHHHHHh-cCCCEEEEEcCCC-cEEEEEeHHHHH
Q 012109 325 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ-AQVSSIPIVDDND-SLLDIYCRSDIT 383 (471)
Q Consensus 325 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g-~lvGivt~~dl~ 383 (471)
+|..+++++.++.++.++++.|.+ ++++++||+++++ +++|++|.+|++
T Consensus 67 ----------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 67 ----------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred ----------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 377789999999999999999999 7999999999886 999999999973
No 153
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2.1e-10 Score=95.98 Aligned_cols=120 Identities=18% Similarity=0.307 Sum_probs=92.1
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++++.++.++.+|++.|.+++++.+||++ + | +++|+++..++.+.+........ ....+. ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~--~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAG-------ETEKDL--ATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhcccc-------chHHHH--HHH
Confidence 467899999999999999999999999993 3 6 89999999999887653221100 000000 000
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
...+.++|..+++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 11123336778999999999999999999999999999998899999999999975
No 154
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.20 E-value=3.2e-10 Score=93.20 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=89.0
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++.+.++.++.+|++.|.+++...++|+ ++ + +++|+++..++++.+..... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~---d~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~~i~~~----- 62 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVR---DG-D---PRLGIVTRTDLLDAVLLDGL-------PSSTPVGEI----- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEe---cC-C---eEEEEEEHHHHHHHHHcCCC-------CCCCCHHHH-----
Confidence 45788999999999999999999999999 34 6 79999999999876532100 012233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++..+.+++++.++++.|.+++...+||+++ |+++|+||..|+++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 63 -------ATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -------hCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 6778899999999999999999999999999985 89999999999875
No 155
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=2.2e-10 Score=96.70 Aligned_cols=116 Identities=11% Similarity=0.167 Sum_probs=85.4
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhh-hccccCCCCcccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR-YFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~-~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
+++++.+++++.+|++.|.+++.+.+||+ +++| +++|+++..|+.+.... ...... ......++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~---d~~~---~~~Giv~~~dl~~~~~~~~~~~~~--~~~~~~~v~~i---- 69 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVV---DSDD---NFIGVITAVDLLGEEPIKRIQEGG--ISRSELTVADV---- 69 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEE---cCCC---cEEEEEEHHHHhhChhhHHHHHcC--CCchheEHHHh----
Confidence 46788999999999999999999999999 3456 89999999998852210 000000 00112233333
Q ss_pred cccccCCCCCCCceEe------cCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAML------RPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~ 384 (471)
|.++...+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 70 --------m~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 70 --------MTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred --------cCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 65544332 268899999999999999999999986 79999999999875
No 156
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=2.2e-10 Score=95.73 Aligned_cols=119 Identities=23% Similarity=0.477 Sum_probs=90.8
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++.+.+++++.+|++.|.+++.+.+||++ + | +++|+++..++++++......... .....+....
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~~----- 67 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRNL----- 67 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhcc-----
Confidence 567899999999999999999999999993 3 7 899999999998765432111000 0000111111
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
.+.++|..++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 68 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 68 --PVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred --CHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 122236678899999999999999999999999999997 99999999999875
No 157
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.18 E-value=5.3e-10 Score=91.96 Aligned_cols=110 Identities=21% Similarity=0.400 Sum_probs=88.7
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+.+++++.+|++.|.+.+.+.+||++ ++ +++|+++..++++.+...... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~~~~----- 63 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVD----NE---KPVGIITERDLVKKVVSRNLK------PREVPVGEV----- 63 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEE----CC---EEEEEEEHHHHHHHHhhccCC------cccCCHHHh-----
Confidence 467889999999999999999999999993 24 799999999999866432100 011233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++..+.+++++.++++.|.+++.+.+||++++ +++|+|+++|+++
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 64 -------MSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred -------cCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 66778899999999999999999999999999865 9999999999864
No 158
>PRK11573 hypothetical protein; Provisional
Probab=99.17 E-value=5.2e-10 Score=113.25 Aligned_cols=121 Identities=14% Similarity=0.239 Sum_probs=98.8
Q ss_pred cCCCCC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 332 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 332 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
++++|. ..+++++.++++.++++.+.+++++++||.+++ +.++|++..+|++.....+. ......+...
T Consensus 189 v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~~- 260 (413)
T PRK11573 189 VDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLRA- 260 (413)
T ss_pred hhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHhh-
Confidence 344465 368999999999999999999999999999753 68999999999997543321 1122322211
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
.+++..|+++.++.++++.|.+++.+-..|+| |.|...|+||..||+..++|
T Consensus 261 ----------~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG 312 (413)
T PRK11573 261 ----------ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred ----------ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence 24789999999999999999999999999999 68999999999999999986
No 159
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.17 E-value=5.2e-10 Score=115.25 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=92.1
Q ss_pred ceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccc
Q 012109 250 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 329 (471)
Q Consensus 250 ~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~ 329 (471)
..++.+++++.+|+++|.+++++.+||++...+++ +++|++|..|+.... .....++.++
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~~-----------~~~~~~V~dI------ 166 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRISR-----------MSLDTKVKDF------ 166 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhccc-----------cCCCCCHHHH------
Confidence 36899999999999999999999999995211257 899999999985310 0123345554
Q ss_pred cccCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 330 PKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 330 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
|.+ +++++.+++++.+|+++|.++++..+||+|++++++|+||++|+++..
T Consensus 167 ------Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 167 ------MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred ------hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 775 788999999999999999999999999999889999999999999853
No 160
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.16 E-value=4.4e-10 Score=95.88 Aligned_cols=109 Identities=21% Similarity=0.332 Sum_probs=81.7
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCc-------ccccCHHHHHhcCCCC
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN-------LSEMTIHQALQLGQDS 411 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~-------~~~~~v~~~~~~~~~~ 411 (471)
.+.++.+++++.+|++.|..++++.+||+|++|+++|++|..|+++........... .....+.+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--- 78 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKG--- 78 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhh---
Confidence 467899999999999999999999999999989999999999999876433211000 0011133343210
Q ss_pred CCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeC
Q 012109 412 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA 451 (471)
Q Consensus 412 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~ 451 (471)
...+.|..+++++.+++++.+|++.|.+++++++||+|+
T Consensus 79 -~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 79 -ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred -hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 011223567899999999999999999999999999984
No 161
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.15 E-value=4.3e-10 Score=92.07 Aligned_cols=107 Identities=21% Similarity=0.365 Sum_probs=86.3
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
+++..+.++.++.++++.|.+++...+||+ +++| +++|+++..+++.... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~~l~~~~~------------~~~~v~~~---- 59 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVV---DDDG---KLVGIVTNRDLRFETD------------LDKPVSEV---- 59 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEE---cCCC---EEEEEEEhhHeeeccc------------CCCCHHHh----
Confidence 356788999999999999999999999999 3457 8999999999863210 11233333
Q ss_pred cccccCCCCCCCceEecC-CCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRP-SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|...+..+.. ++++.++++.|.+.+.+.+||++++|+++|+|+.+|+++
T Consensus 60 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 60 --------MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred --------cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 5555566666 999999999999999999999998899999999999874
No 162
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.15 E-value=5.1e-10 Score=115.54 Aligned_cols=116 Identities=14% Similarity=0.209 Sum_probs=96.9
Q ss_pred cCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccc
Q 012109 246 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 325 (471)
Q Consensus 246 m~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i 325 (471)
|.++++++.+++++.+|+++|.+++++.+||++....++ +++|++|..|+... . ....++.++
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v-~-----------~~~~~V~eI-- 168 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV-N-----------DRETKLSEV-- 168 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc-c-----------ccCCcHHHH--
Confidence 678899999999999999999999999999994211146 89999999998632 1 013345444
Q ss_pred cccccccCCCCCCC--ceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 326 GTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 326 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
|.++ ++++.+++++.+|+++|.+++...+||+|++++++|+||++|+++....
T Consensus 169 ----------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 169 ----------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ----------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 7755 8899999999999999999999999999989999999999999987643
No 163
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.15 E-value=4.9e-10 Score=91.63 Aligned_cols=108 Identities=19% Similarity=0.395 Sum_probs=86.4
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
+++++.+++++.+|++.|.+++.+.+||++ + + +++|+++..++.+.+...... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~----- 62 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPVREV----- 62 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCHHHH-----
Confidence 467889999999999999999999999993 4 6 899999999999876432110 11233333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++..+.+++++.+++++|.+ . ..+||++++|+++|+||.+|+++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 63 -------MGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred -------hcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 66678899999999999999987 3 34788888899999999999875
No 164
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.14 E-value=9.5e-10 Score=112.80 Aligned_cols=115 Identities=18% Similarity=0.314 Sum_probs=96.2
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
.|.++++++.+++++.+|+++|.+++++++||++.+...+ +++|+++.+|++.... ...++.++
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~~------------~~~~V~dv- 148 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVKD------------KGKPVSEV- 148 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhhc------------CCCCHHHh-
Confidence 5778899999999999999999999999999995211116 8999999999864210 12334444
Q ss_pred ccccccccCCCCC-CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 325 VGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 325 i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
|. .+++++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus 149 -----------m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 149 -----------MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred -----------hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 76 4899999999999999999999999999999999999999999999865
No 165
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=9.6e-10 Score=89.54 Aligned_cols=105 Identities=22% Similarity=0.434 Sum_probs=87.9
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++++++..+.++.+|++.|.+.+...+||++ + + +++|+++..+++.. . ...++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~------~-------~~~~~~~~---- 57 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK------D-------PDETVEEI---- 57 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc------C-------ccccHHHh----
Confidence 4577899999999999999988888999993 4 6 89999999998741 0 01233333
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|...+.++.+++++.++++.|.+++..++||++++|+++|+++..|+++
T Consensus 58 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 58 --------MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred --------CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 6667889999999999999999999999999998899999999999874
No 166
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=7.3e-10 Score=90.80 Aligned_cols=102 Identities=16% Similarity=0.314 Sum_probs=83.8
Q ss_pred cCCCCCHHHHHHHHHhCC-----ccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 253 AGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 253 v~~~~sl~~a~~~m~~~~-----~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
+.+++++.++++.|.+++ ...+||+ ++++ +++|+++.+++++. . ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv---d~~~---~~~G~v~~~~l~~~------~-------~~~~v~~~---- 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVV---DEEG---RLLGVVSLRDLLLA------D-------PDTPVSDI---- 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEE---CCCC---CEEEEEEHHHHhcC------C-------CcchHHHH----
Confidence 578899999999998877 4788999 3456 89999999988741 0 01223333
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 385 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~ 385 (471)
|.+++..+.+++++.++++.|..++...+||+|++|+++|+||..|++++
T Consensus 59 --------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 59 --------MDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred --------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 66778999999999999999999999999999988999999999999874
No 167
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=7.2e-10 Score=89.97 Aligned_cols=102 Identities=20% Similarity=0.382 Sum_probs=86.1
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+.+++++.++++.|.+++.+.+||++ ++ +++|+++..++++... ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~---~~~Giv~~~~l~~~~~-------------~~~~~~~----- 56 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE----DG---KLVGIITSRDVRRAHP-------------NRLVADA----- 56 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEehHHhhcccc-------------cCCHHHH-----
Confidence 467789999999999999999999999993 36 8999999999875210 1223333
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 383 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~ 383 (471)
|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|.+|++
T Consensus 57 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 57 -------MTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred -------ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 6678899999999999999999999999999997 9999999999986
No 168
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.13 E-value=1.4e-09 Score=88.63 Aligned_cols=111 Identities=24% Similarity=0.462 Sum_probs=90.6
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++..+.++.++.++++.|.+++.+.+||+ ++++ +++|+++..++++.+........ ..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~------- 61 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVV---DDDG---RLVGIVTERDLLRALAEGGLDPL-------VTVG------- 61 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEE---CCCC---CEEEEEeHHHHHHHHHhccCCcc-------ccHH-------
Confidence 46778999999999999999999999999 3446 89999999999987654321100 0012
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
++|..++..+.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++
T Consensus 62 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 62 -----DVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred -----HHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 225667888999999999999999999999999998899999999999875
No 169
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.11 E-value=9.2e-10 Score=89.46 Aligned_cols=100 Identities=15% Similarity=0.282 Sum_probs=84.4
Q ss_pred eecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccccc
Q 012109 251 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP 330 (471)
Q Consensus 251 v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~ 330 (471)
+++.++.++.+|++.|.+.+...+||++ + + +++|+++..++++... .++.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~--------------~~~~~~------- 55 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENATY--------------GDVVDY------- 55 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhcc--------------cchhhh-------
Confidence 4678999999999999999999999993 4 7 8999999999875310 112222
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|...+.++.++.++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 56 -----~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 56 -----IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -----hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 566788999999999999999999999999998 689999999999874
No 170
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.10 E-value=1.2e-09 Score=91.13 Aligned_cols=117 Identities=17% Similarity=0.369 Sum_probs=89.9
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCC--Cccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS--LPILKLPICAIPVG 326 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~--~~~~~~~v~~~~i~ 326 (471)
++.++.+++++.+|++.|.+.+.+.+||+ ++++ +++|+++..++++............ ......++.+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~---d~~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---- 71 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVV---DEEG---RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE---- 71 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEE---CCCC---cEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----
Confidence 46788999999999999999999999999 3456 8999999999987543221110000 0000122222
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 327 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 327 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
+|..++.++..++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus 72 --------~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 72 --------IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred --------HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 36678899999999999999999999999999986 99999999999875
No 171
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.10 E-value=6.1e-10 Score=118.39 Aligned_cols=120 Identities=16% Similarity=0.270 Sum_probs=98.7
Q ss_pred CcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 243 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 243 g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
+++|.+++.++++++++.++++.|.+++.+.+||+ ++++ +++|+++.+|+.+.+..... ....++.+
T Consensus 450 ~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~Vv---D~~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~v~d 516 (574)
T PRK01862 450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVV---DDDG---RFRGAVALKDITSDLLDKRD-------TTDKTAAD 516 (574)
T ss_pred HHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEE---cCCC---eEEEEEEHHHHHHHhhcccc-------cccchHHH
Confidence 34688889999999999999999999999999999 4567 89999999999875532110 00122333
Q ss_pred ccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 012109 323 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAK 387 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGivt~~dl~~~~~ 387 (471)
+ |.+++.++.+++++.++++.|.+++.+.+||+|++ ++++|+||++|+++.+.
T Consensus 517 i------------m~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 517 Y------------AHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred h------------ccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 3 77788999999999999999999999999999876 48999999999998764
No 172
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.10 E-value=5.6e-10 Score=107.28 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=92.1
Q ss_pred CcccCCC-ceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 243 GKAFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 243 g~im~~~-~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
+.+|.++ +..+.+++++.+|++.|.+.+.+.+||+ +++| +++|+++..|+++.+.... ....++.
T Consensus 158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv---d~~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~ 223 (268)
T TIGR00393 158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVC---DENN---QLVGVFTDGDLRRALLGGG--------SLKSEVR 223 (268)
T ss_pred HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEE---eCCC---CEEEEEEcHHHHHHHhcCC--------cccCcHH
Confidence 3468788 9999999999999999999999999999 3557 8999999999987543210 1123444
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEe
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 378 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt 378 (471)
++ |.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 224 ~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 224 DF------------MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred Hh------------CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 44 7888999999999999999999999999999998899999985
No 173
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.09 E-value=1.4e-09 Score=88.72 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=86.0
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCC--CCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 326 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~--~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~ 326 (471)
....+.+++++.++.+.|.+.+...+||++ +. +| +++|+++..++.+.... +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~---~~~G~v~~~dl~~~~~~------------------~--- 56 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVD--STEESP---RLVGYILRSQLVVALKN------------------Y--- 56 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEc--CCCCCC---EEEEEEeHHHHHHHHHH------------------h---
Confidence 356789999999999999999999999993 22 57 89999999999865432 1
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 327 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 327 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|.+++.++.+++++.++++.|.+++.+.+||++ +|+++|+||++|+++
T Consensus 57 ---------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 57 ---------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred ---------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 566788999999999999999999999999995 789999999999875
No 174
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.08 E-value=1.2e-09 Score=112.82 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=95.8
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
.|..+++++.+++++.+|+++|.+++++.+||++.+..++ +++|+++.+|+.. .. ....++.++
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~-----------~~~~~V~di- 164 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK-----------DKSTPVSEV- 164 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc-----------cCCCCHHHh-
Confidence 4667889999999999999999999999999995321246 8999999999862 11 012344444
Q ss_pred ccccccccCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 325 VGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 325 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
|.+ +++++.+++++.+++++|.+++...+||+|++++++|+||++||++..
T Consensus 165 -----------Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 165 -----------MTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred -----------hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 776 789999999999999999999999999999999999999999999753
No 175
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=1.9e-09 Score=93.24 Aligned_cols=126 Identities=27% Similarity=0.477 Sum_probs=93.8
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhcc-c---cCCCCccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR-H---CSSSLPILKLPICAIP 324 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~-~---~~~~~~~~~~~v~~~~ 324 (471)
+++++.+++++.++++.|.+.+++.+||++ + + +++|+++..++++++..... . .+.....+..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 567899999999999999999999999993 3 6 89999999999987653221 0 000011112222221
Q ss_pred cccc-----------ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 325 VGTW-----------VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 325 i~~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
..| ...+.++|..++.++..++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 000 11234557778999999999999999999999999999987 89999999999864
No 176
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.04 E-value=2.6e-09 Score=88.84 Aligned_cols=113 Identities=12% Similarity=0.208 Sum_probs=86.6
Q ss_pred CceecCCCCCHHHHHHHHHhCC-ccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~-~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++.++.+++++.+|++.|...+ .+.+||++ + | +++|+++..++++++....... .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~~----~~~~~~v~~----- 65 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGRA----LYGKKPVSE----- 65 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhHH----HHcCCcHHH-----
Confidence 4667899999999999998887 88999993 4 7 8999999999987554211000 000122333
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVS---SIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~lvGivt~~dl~~ 384 (471)
+|..++..+.+++++.++++.|.+++.. ..+|++++|+++|+|+..|+++
T Consensus 66 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 66 -------VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred -------hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 3777899999999999999999888753 4468888899999999999874
No 177
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.04 E-value=1.6e-09 Score=102.29 Aligned_cols=113 Identities=15% Similarity=0.298 Sum_probs=97.8
Q ss_pred ccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 245 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 245 im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
+|. ....++.+++++.+-.++..+.+.+++||+ +... +++|+++.+|++... -+.++..
T Consensus 193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVv---n~~~---kvvGvVt~rDv~~~~-------------~~t~ieK 253 (432)
T COG4109 193 IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVV---NRSM---KVVGVVTMRDVLDKK-------------PSTTIEK 253 (432)
T ss_pred hccccccceeccccccHHHHHHHHHHcCCCcccee---cccc---eEEEEEEehhhhcCC-------------CCccHHH
Confidence 455 667889999999999999999999999999 4556 899999999987421 1334444
Q ss_pred ccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 323 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+ |+++++++.+.+++..+.++|.-.++.-+||+|++.+++|+||++|+++.+..
T Consensus 254 V------------Mtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 254 V------------MTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred H------------hccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 4 99999999999999999999999999999999999999999999999987643
No 178
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.99 E-value=5.5e-09 Score=106.80 Aligned_cols=113 Identities=19% Similarity=0.335 Sum_probs=96.2
Q ss_pred CCceEecCCCcHHHHHHHHHhcCCCEEEEEc-CCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccc
Q 012109 338 RPLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 416 (471)
Q Consensus 338 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~ 416 (471)
.++..++.+.++.++.+.+.+++++++||++ +.+.++|++..+|++.....+.. . ......
T Consensus 216 ~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~~------------ 277 (429)
T COG1253 216 TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRVL------------ 277 (429)
T ss_pred ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhhc------------
Confidence 4688999999999999999999999999999 45689999999999997655421 0 111111
Q ss_pred ccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 417 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 417 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
-.++..+++++++.++++.|.+.+.|-..|+| |.|.+.|+||..||+..++|
T Consensus 278 --~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 278 --VRPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred --ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence 12799999999999999999999999999999 68999999999999999986
No 179
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.95 E-value=4.3e-09 Score=106.11 Aligned_cols=115 Identities=16% Similarity=0.298 Sum_probs=99.9
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHh-----cCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHH
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 405 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~ 405 (471)
.++.+|...++++.++.|+.+++..+++ ..+..+.|+|+++++.|+++.++++..-. +..+.++|
T Consensus 133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~im 202 (451)
T COG2239 133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKDLM 202 (451)
T ss_pred hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHHHh
Confidence 3455589999999999999999999984 34578999999999999999999986422 24677766
Q ss_pred hcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 406 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
.+.++++.+++..+++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus 203 -------------~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi 252 (451)
T COG2239 203 -------------EDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI 252 (451)
T ss_pred -------------cccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence 55799999999999999999999999999999 689999999999999865
No 180
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.94 E-value=1.4e-08 Score=82.65 Aligned_cols=104 Identities=23% Similarity=0.421 Sum_probs=84.9
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
++.++.++.++.+|+..|.+.+.+.+||++ +++ +++|+++..+++... . ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~g~v~~~~l~~~~-----~--------~~~~~~~----- 57 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVK---KSG---ELVGIITRKDLLRNP-----E--------EEQLALL----- 57 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEHHHHHhcc-----c--------cchHHHH-----
Confidence 467888899999999999999999999993 446 899999999987410 0 0122222
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
|..++.++..++++.++++.|.+++.+.+||+|+ |+++|+++..|++.
T Consensus 58 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 58 -------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred -------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 5567888999999999999999999999999984 79999999999874
No 181
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.92 E-value=9.5e-09 Score=106.40 Aligned_cols=116 Identities=13% Similarity=0.211 Sum_probs=92.5
Q ss_pred CcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 243 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 243 g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
+.+|.+++.++.+++++.+|++.|.+++++.+||+ ++++ +++|+++..|+++.+..... ....++.+
T Consensus 338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~~ 404 (454)
T TIGR01137 338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVV---TEAG---KVLGSVTLRELLSALFAGKA-------NPDDAVSK 404 (454)
T ss_pred HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---eEEEEEEHHHHHHHHhccCC-------CcCCCHHH
Confidence 44788999999999999999999999999999999 3456 89999999999986643110 01223444
Q ss_pred ccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 323 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
+ |.+++.++.+++++.+++++|.+++ . ++|+++++++|+||++|+++.+
T Consensus 405 i------------m~~~~~~v~~~~~l~~a~~~~~~~~--~-~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 V------------MSKKFIQIGEGEKLSDLSKFLEKNS--S-AIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred h------------cCCCCeEECCcCcHHHHHHHHHHCC--e-eEEEECCEEEEEEEHHHHHHhh
Confidence 4 7778889999999999999998754 3 4455578999999999999864
No 182
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.90 E-value=3.1e-09 Score=76.20 Aligned_cols=54 Identities=30% Similarity=0.501 Sum_probs=50.5
Q ss_pred ccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 417 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 417 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
+|.++++++.+++++.+|++.|.+++++++||+| ++++++|+||.+||++++.+
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence 5677999999999999999999999999999999 58999999999999999863
No 183
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.88 E-value=1.8e-08 Score=86.00 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=79.5
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCc-ccc---ccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP-ILK---LPICAIP 324 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~-~~~---~~v~~~~ 324 (471)
+++++.+++++.+|++.|.++++..+||+ +++| +++|+++..|+++++............ .+. ..+.++.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~Vv---D~~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVV---DSDD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEE---CCCC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 46789999999999999999999999999 4567 899999999999877532111000000 000 0011110
Q ss_pred ccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC
Q 012109 325 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 370 (471)
Q Consensus 325 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 370 (471)
.. ..+.+.|..+++++.+++++.+|+++|.+++++++||+|++
T Consensus 76 ~~---~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 TK---GISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hh---hhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 00 01122345678999999999999999999999999999864
No 184
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.86 E-value=5.5e-09 Score=74.90 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=50.4
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 387 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~ 387 (471)
++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+||++++.
T Consensus 3 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 3 DIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred ECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 348889999999999999999999999999999999999999999999998753
No 185
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.84 E-value=1.5e-07 Score=93.59 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=91.6
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 418 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 418 (471)
......++.+..++++.|...+...+.|+|+++++.|.++.+++..+.... ..+.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~------------- 308 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQDVL------------- 308 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhhhh-------------
Confidence 344566777899999999999999999999999999999999998765432 2345544
Q ss_pred CCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 419 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 419 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
...+.++.++++|.+++..|.+++.. +||+| ++|+++|+||..+++++|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred ccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHH
Confidence 34678899999999999999999998 99999 5899999999999999885
No 186
>PRK11573 hypothetical protein; Provisional
Probab=98.83 E-value=1.5e-07 Score=95.55 Aligned_cols=126 Identities=11% Similarity=0.127 Sum_probs=97.8
Q ss_pred cCCCCcccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccc
Q 012109 239 IDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL 316 (471)
Q Consensus 239 ~~~~g~im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~ 316 (471)
+..+..+|. .++++++.++++.++++.+.+++.+++||++ ++.. +++|++..+|++..+... .. .-
T Consensus 186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~--~~~D---~IiGiv~~kDll~~~~~~-~~------~~ 253 (413)
T PRK11573 186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYR--DSLD---DAISMLRVREAYRLMTEK-KE------FT 253 (413)
T ss_pred CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEc--CCCC---ceEEEEEHHHHHHHhhcc-Cc------CC
Confidence 444555664 5689999999999999999999999999994 2223 699999999998654321 00 00
Q ss_pred ccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 317 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 317 ~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
...+.+ ..+++..++++.++.++++.|.+++.+-..|+|+.|...|+||..|++..+-..
T Consensus 254 ~~~l~~-------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGe 313 (413)
T PRK11573 254 KENMLR-------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD 313 (413)
T ss_pred HHHHHh-------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCC
Confidence 011111 124678899999999999999999999999999999999999999999876543
No 187
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.81 E-value=2.1e-08 Score=77.68 Aligned_cols=71 Identities=30% Similarity=0.438 Sum_probs=58.9
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCC-ceEEEEEEECCEEeeCCCCCeeeCCCC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPP-GYHQYKFCVDGEWRHDEHQPFISSEYG 99 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~-g~~~ykf~vdg~w~~d~~~~~~~~~~g 99 (471)
.++|+ |..++++|.|++.|++|....+|.+. .+|.|++.+++.. +.|.|+|+|+|.|.+++.++...+...
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~--~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~ 77 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV--EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGS 77 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEEC--CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCc
Confidence 57788 77778999999999997666799874 4699999999998 999999999999999988765444433
No 188
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.79 E-value=2.1e-08 Score=89.76 Aligned_cols=112 Identities=16% Similarity=0.396 Sum_probs=98.7
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
..+++..+.++.+++..+.+...+++||+.+ .+.+.|++-.+||++++..... ...+.+++
T Consensus 78 QM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL------------ 139 (293)
T COG4535 78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL------------ 139 (293)
T ss_pred HheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc------------
Confidence 5788999999999999999999999999976 4589999999999998765421 24667766
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
+|.+.|+++-.+...++-+...+.|-.+|+| +-|-+-|+||..||+..++|
T Consensus 140 --RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 140 --RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred --ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence 4788999999999999999999999999999 68999999999999999886
No 189
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.75 E-value=5e-08 Score=78.12 Aligned_cols=65 Identities=25% Similarity=0.535 Sum_probs=51.4
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEEc--------CCc-eEEEEEEE-CCEE--eeCCCCC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI--------PPG-YHQYKFCV-DGEW--RHDEHQP 92 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~l--------~~g-~~~ykf~v-dg~w--~~d~~~~ 92 (471)
-++|+ |...|++|+|+|+||+|++. .+|.+. ..|.|+++++. +.| .|.|++.. ||+| +.||-..
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~--~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD--EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEEC--CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 46788 99999999999999999874 589885 48999999885 455 66666666 7875 5777665
Q ss_pred e
Q 012109 93 F 93 (471)
Q Consensus 93 ~ 93 (471)
.
T Consensus 84 ~ 84 (99)
T cd02854 84 Y 84 (99)
T ss_pred E
Confidence 4
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=3.2e-07 Score=92.49 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=88.5
Q ss_pred ecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccccCCcc
Q 012109 343 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 422 (471)
Q Consensus 343 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 422 (471)
..++.+..++++.|...+.+.++|+|+++++.|+++..++.+..... ..+.+.+ ....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence 34667889999999999999999999999999999999998765432 2345544 3457
Q ss_pred eEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 423 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 423 ~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.++.++++|.+++..|.++... +|||| ++|+++|+||..+++++|.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALD 393 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHH
Confidence 8899999999999999998776 99999 5899999999999999875
No 191
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.66 E-value=1.6e-07 Score=89.89 Aligned_cols=121 Identities=15% Similarity=0.260 Sum_probs=100.1
Q ss_pred cCCCCC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 332 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 332 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
|+++|. ..+..+..+++.+++.+.+....+.++|+..+ -+.++|++..+|+++++.+... ..-.++++.
T Consensus 202 V~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------~~k~d~~~~- 273 (423)
T COG4536 202 VSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------FTKEDILRA- 273 (423)
T ss_pred eeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------ccHhHHHHH-
Confidence 344454 46889999999999999999999999999954 2469999999999998876531 122333322
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
..+++++++++++.+-+..|.+++-|.-.||| |-|.+.|+||+.||+..++|
T Consensus 274 ----------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 274 ----------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred ----------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence 24699999999999999999999999999999 79999999999999999886
No 192
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.58 E-value=1.4e-06 Score=89.31 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=99.4
Q ss_pred ccCCCCcccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcc
Q 012109 238 QIDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 315 (471)
Q Consensus 238 ~~~~~g~im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~ 315 (471)
.+..+..+|. .+++.++.+.++.++.+.+.+++.+++||++ +... .++|++..+|++........ .
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~--~~~D---~iiGiv~~Kdll~~~~~~~~-~------ 271 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYD--GDLD---NIIGIVHVKDLLRALLDGQS-D------ 271 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc--CCCC---cEEEEEEHHHHHHHHhcCcc-c------
Confidence 3444556674 5788999999999999999999999999995 2333 69999999999987654311 0
Q ss_pred cccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 316 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 316 ~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
..... .-+++..+++..++.++++.|.+.+.+-..|+|+.|...|+||..|++..+...
T Consensus 272 ---~~~~~------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGe 330 (429)
T COG1253 272 ---LDLRV------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGE 330 (429)
T ss_pred ---cchhh------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCC
Confidence 00000 112788999999999999999999999999999999999999999999977553
No 193
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.53 E-value=7.7e-08 Score=75.16 Aligned_cols=57 Identities=32% Similarity=0.616 Sum_probs=46.2
Q ss_pred eEEEE-ecCCCceEEEEeecCC-CCCC-CCCccccCCCCeEEEEEE--cCCceEEEEEEECCE
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNR-WSEL-LPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE 84 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~-W~~~-~~~~~~~~~~~~~~~~~~--l~~g~~~ykf~vdg~ 84 (471)
-++|+ |...|++|.|++.|++ |... .+|.+ ...+|.|+++++ +++|.+.|+|.|+|.
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~-~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTR-KDDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEE-ECTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeee-cCCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 57788 9999999999999999 8754 58884 246899999999 888988888888754
No 194
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.53 E-value=8.2e-07 Score=85.74 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=119.2
Q ss_pred HcCCcccccccCCCCeeeeecchHHHHHHHHHhccCC---CCCChhhHhhhcHHHHHHHHhhhccccCCCCcccCCCcee
Q 012109 176 EQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVY 252 (471)
Q Consensus 176 ~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~im~~~~v~ 252 (471)
++--...|++.+ ...-+|+++-+.++..+..-+ .+-.. +.....+..|+.....+ ..+++.
T Consensus 57 r~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctp-e~QA~~v~~vK~~~~g~-----------~~~p~v 120 (503)
T KOG2550|consen 57 RNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTP-EDQADMVRRVKNYENGF-----------INNPIV 120 (503)
T ss_pred hcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCH-HHHHHHHHHHHHhhccc-----------ccCCcc
Confidence 333445587653 356788999887775554211 11221 11222344455444332 456788
Q ss_pred cCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccccccc
Q 012109 253 AGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKI 332 (471)
Q Consensus 253 v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v 332 (471)
+.|+.++.++++.-..+++..+||.....-.. +++|+||.+|+- |+.++ ...+.
T Consensus 121 ~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~---KLvG~vtsrdi~-f~~~~-----------~~~~~----------- 174 (503)
T KOG2550|consen 121 ISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGS---KLVGIITSRDIQ-FLEDN-----------SLLVS----------- 174 (503)
T ss_pred cCCcccchhhhhhcccccccccccccCCcccc---eeEEEEehhhhh-hhhcc-----------cchhh-----------
Confidence 99999999999999999999999994322334 899999999974 44211 12233
Q ss_pred CCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 012109 333 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 385 (471)
Q Consensus 333 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~ 385 (471)
++|.+..++.....++.++-+++.+++-..+||+|++|+++.++++.||.+.
T Consensus 175 -~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 175 -DVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred -hhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 3488888999999999999999999999999999999999999999999874
No 195
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.41 E-value=4.9e-06 Score=74.83 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=95.7
Q ss_pred CCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccc
Q 012109 247 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 326 (471)
Q Consensus 247 ~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~ 326 (471)
....+++..+.++.+++..+.+...+++||+.. +.. .+.||+-.+|+++++...... ..+.+
T Consensus 76 RSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e--dkD---~v~GIL~AKDLL~~~~~~~~~---------F~i~~---- 137 (293)
T COG4535 76 RSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HVEGILLAKDLLPFMRSDAEP---------FDIKE---- 137 (293)
T ss_pred HHHheeccccCCHHHHHHHHHHhccccCCcccC--Cch---hhhhhhhHHHHHHHhcCCccc---------ccHHH----
Confidence 556899999999999999999999999999953 333 699999999999986543211 11222
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 327 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 327 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
+-+|.+.++++..+...++-++.++.+-..|+|+-|-+.|+||..|++..+-..
T Consensus 138 ---------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 138 ---------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred ---------hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcc
Confidence 245788999999999999999999999999999999999999999999876543
No 196
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.40 E-value=4.6e-07 Score=91.82 Aligned_cols=137 Identities=18% Similarity=0.292 Sum_probs=105.4
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcC-----CCcEEEEEeHHHHHHHHhccccccC--ccc------
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-----NDSLLDIYCRSDITALAKDKAYAHI--NLS------ 397 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~g~lvGivt~~dl~~~~~~~~~~~l--~~~------ 397 (471)
.++++|.++++++..-+.+..+.++++...++.+||+|+ .+++.|+|-++.++.+++++.+..- +..
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 457889999999999999999999999999999999985 1578999999999988766544311 111
Q ss_pred ccCHHHHHhcCCCCCC-------------cccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHH
Q 012109 398 EMTIHQALQLGQDSYS-------------PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSD 464 (471)
Q Consensus 398 ~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~D 464 (471)
..+.+++..+..+-.. ...+|.+.++++.+++++..++.++.+-+.|++.||+ ..++++|++|++|
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~-~~~~~~gilTR~D 741 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP-KTNRVVGILTRKD 741 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec-CCCceeEEEehhh
Confidence 1222333321110000 0126888999999999999999999999999999999 5788899999999
Q ss_pred HHHH
Q 012109 465 IFKF 468 (471)
Q Consensus 465 il~~ 468 (471)
+.+.
T Consensus 742 ~~~~ 745 (762)
T KOG0474|consen 742 LARY 745 (762)
T ss_pred hhhH
Confidence 9854
No 197
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.39 E-value=7.2e-07 Score=86.10 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=91.8
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcC---CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcc
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 415 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~ 415 (471)
+++.+.++.++.++++....+++..+||+.. ..+++|+||.+|+-.+ .+. ...+.++|
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~vm---------- 177 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSDVM---------- 177 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhhhc----------
Confidence 5678899999999999999999999999964 3589999999998766 221 24566655
Q ss_pred cccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 416 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 416 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
+.+.++.+.+.+|.++-++|.+++...+|||| +++.++.+|++.||.+.
T Consensus 178 ---t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 178 ---TKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN 226 (503)
T ss_pred ---ccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence 55678899999999999999999999999999 68999999999999874
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.36 E-value=7.5e-06 Score=81.59 Aligned_cols=110 Identities=11% Similarity=0.236 Sum_probs=88.8
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
......++.+..++++.|...+...+.|+ ++++ ++.|.++..++..+.... ..+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~----- 307 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVV---DRQN---KLVGVVDVESIKQARKKA------------QGLQDV----- 307 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEE---cCCC---CEEEEEeHHHHHHHhhcC------------Cchhhh-----
Confidence 33456677789999999999999999999 4556 799999999987654321 112222
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
+...+.++.+++++.+++..|.+++.. +||+|++|+++|+|++.+++..+...
T Consensus 308 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 308 -------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred -------hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 445677899999999999999999988 99999999999999999999987653
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=1.9e-05 Score=79.72 Aligned_cols=106 Identities=12% Similarity=0.177 Sum_probs=85.7
Q ss_pred cCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccccccc
Q 012109 253 AGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKI 332 (471)
Q Consensus 253 v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v 332 (471)
..++.+..+|+..|..++.+.+.|+ ++++ +++|+++..++.+..... .++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~--------- 342 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVI---ERGN---KFVGAVSIDSLKTALTQQ------------QGLDAA--------- 342 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEE---cCCC---cEEEEEeHHHHHhhhhcC------------Cchhhh---------
Confidence 4466789999999999999999999 4667 899999999997654321 112222
Q ss_pred CCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 333 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 333 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
+.....++.+++++.+++..|.+.... +||+|++|+++|+|++.++++.+...
T Consensus 343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 343 ---LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred ---hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 344577899999999999999987765 99999999999999999999987543
No 200
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.10 E-value=7e-05 Score=72.15 Aligned_cols=125 Identities=19% Similarity=0.320 Sum_probs=101.6
Q ss_pred ccccccee---EEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhhcHH
Q 012109 150 RISEADLQ---VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 226 (471)
Q Consensus 150 ~~~~~~~~---vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~ 226 (471)
.|.|.+.. +..++.+.+.++.++.+...-..++|+|..+..+++|++-.+|+++++.+.. ++..+.+.
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~d~~----- 271 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKEDIL----- 271 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHhHHH-----
Confidence 47777765 9999999999999999999999999999877778999999999999885421 12211111
Q ss_pred HHHHHHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhc
Q 012109 227 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 306 (471)
Q Consensus 227 ~~~~~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~ 306 (471)
. .-.++..++..+++.+-+..|.+++-+-..|+ ++-| .+.|++|.+||+.-+...+
T Consensus 272 ------~------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVV---DEYG---~i~GLVTLEDIlEEIVGdf 327 (423)
T COG4536 272 ------R------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVV---DEYG---DIQGLVTLEDILEEIVGDF 327 (423)
T ss_pred ------H------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEE---eccC---cEEeeeeHHHHHHHHhccc
Confidence 1 12467899999999999999999999999999 5788 8999999999998877554
Q ss_pred c
Q 012109 307 R 307 (471)
Q Consensus 307 ~ 307 (471)
.
T Consensus 328 t 328 (423)
T COG4536 328 T 328 (423)
T ss_pred c
Confidence 3
No 201
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.09 E-value=1e-05 Score=82.33 Aligned_cols=145 Identities=13% Similarity=0.192 Sum_probs=106.0
Q ss_pred CCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhc-ccc-CCC--Ccc-
Q 012109 241 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF-RHC-SSS--LPI- 315 (471)
Q Consensus 241 ~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~-~~~-~~~--~~~- 315 (471)
.++++|++|++++..-+.+....+.+.....+.+||+|+.+.+. ...+.|++-.+.++..+.... .+. +.. .+.
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~ 661 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVR 661 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchh
Confidence 44678999999999999999999999999999999997532211 237899999999987775431 111 000 000
Q ss_pred ----------ccccccccccccc----ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHH
Q 012109 316 ----------LKLPICAIPVGTW----VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSD 381 (471)
Q Consensus 316 ----------~~~~v~~~~i~~~----~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~d 381 (471)
-..+++++.+... ...+..+|.+.+.++.+++++..++.+++.-+.+++.|++...+.+|++|++|
T Consensus 662 ~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D 741 (762)
T KOG0474|consen 662 RKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKD 741 (762)
T ss_pred hcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhh
Confidence 0012223222111 11345667888999999999999999999999999999998888999999999
Q ss_pred HHHHH
Q 012109 382 ITALA 386 (471)
Q Consensus 382 l~~~~ 386 (471)
++..-
T Consensus 742 ~~~~~ 746 (762)
T KOG0474|consen 742 LARYR 746 (762)
T ss_pred hhhHH
Confidence 98654
No 202
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.87 E-value=2.7e-05 Score=64.22 Aligned_cols=53 Identities=26% Similarity=0.454 Sum_probs=47.6
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
++++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+||.+
T Consensus 60 v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 60 VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 34448888999999999999999999999999999998899999999999864
No 203
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.86 E-value=4.8e-05 Score=61.28 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=50.3
Q ss_pred EEEE-ecCCCceEEEEeecCCCC-----CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCE-----EeeCCCCCeee
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFIS 95 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~-----~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-----w~~d~~~~~~~ 95 (471)
++|+ |...|++|.|+. |++|. ..++|.+ ..+|.|++.++ +.+|. .|+|.|+|. .+.||....+.
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~--~~~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR--GENGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec--CCCCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeEe
Confidence 6786 999999999998 88886 3468877 46899999987 55565 488888876 78888777543
No 204
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.86 E-value=5.2e-05 Score=60.55 Aligned_cols=56 Identities=25% Similarity=0.554 Sum_probs=44.5
Q ss_pred eeEEEEe---cCCCceEEEEeecC---CCCC--CCCCccccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 012109 26 IPMRFVW---PYGGRSVFLSGSFN---RWSE--LLPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 26 ~~~~f~~---~~~~~~V~v~Gsf~---~W~~--~~~~~~~~~--~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
|.++|.- ...++.|+|+||.. +|++ .++|...+. ....|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 5677764 34589999999998 7997 468877532 56899999999999 79999998
No 205
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.82 E-value=5.8e-05 Score=50.84 Aligned_cols=47 Identities=38% Similarity=0.572 Sum_probs=42.9
Q ss_pred ceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 422 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 422 ~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
+.++.+++++.++++.|.+.+.+.+||++ ++++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVD-EEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEEC-CCCeEEEEEEHHHHHHhh
Confidence 56789999999999999999999999999 468999999999998875
No 206
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.81 E-value=0.00017 Score=58.55 Aligned_cols=67 Identities=25% Similarity=0.509 Sum_probs=45.9
Q ss_pred EEEE-ecCCCceEEEEeecCCCCC-CCCCccccCCCCeEEEEEE-cCCc-eEEEEEEEC-CE--EeeCCCCCeee
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWSE-LLPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GE--WRHDEHQPFIS 95 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~-~~~~~~~~~~~~~~~~~~~-l~~g-~~~ykf~vd-g~--w~~d~~~~~~~ 95 (471)
++|+ |..+|++|.|+++|++|.. ..+|.+. ...|.|.+.++ +++| .|.|++..+ |. .+.||...-++
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~ 96 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE 96 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEEC-CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE
Confidence 5677 9999999999999999965 3588774 24799999886 6666 444444433 33 34555554333
No 207
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.80 E-value=5.1e-05 Score=62.53 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=45.0
Q ss_pred ccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 417 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 417 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
+|.+++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence 3456788999999999999999999999999999 5799999999999864
No 208
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.73 E-value=6.2e-05 Score=78.81 Aligned_cols=67 Identities=27% Similarity=0.521 Sum_probs=53.2
Q ss_pred eeEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEECCE-----EeeCCCCCee
Q 012109 26 IPMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFI 94 (471)
Q Consensus 26 ~~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-----w~~d~~~~~~ 94 (471)
-.++|+ |...++.|.|+|+||+|... .+|... +..|.|+++++ +++| +.|||.+++. ++.||..-..
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~ 110 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-KESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQ 110 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccC-CCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhcc
Confidence 468888 99999999999999999984 354432 35699999999 9999 9999998653 3777766443
No 209
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.69 E-value=0.00016 Score=57.57 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=37.7
Q ss_pred CCceEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 35 GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 35 ~~~~V~v~Gs---f~~W~~~--~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
.|++|+|+|+ |.+|++. .+|... ..+.|++++.||+| .++|||++
T Consensus 13 ~ge~l~v~G~~~~lG~W~~~~a~~l~~~--~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 13 WGQNVYVVGNVPELGNWSPANAVALSAA--TYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CCCEEEEEeCcHHhCCCChhhCccCCCC--CCCCEEEEEEeCCCCeEEEEEEE
Confidence 4899999995 7899864 478763 46889999999998 79999996
No 210
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.68 E-value=0.00027 Score=58.87 Aligned_cols=57 Identities=21% Similarity=0.449 Sum_probs=44.0
Q ss_pred eeEEEEec--CCCceEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEEC
Q 012109 26 IPMRFVWP--YGGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD 82 (471)
Q Consensus 26 ~~~~f~~~--~~~~~V~v~Gs---f~~W~~~--~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~vd 82 (471)
+++.+..+ ..++.|+|+|+ +.+|++. .+|.+.....+.|++++.||++ .++|||++.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 45555553 35899999999 8899854 4787642246889999999999 899999993
No 211
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.64 E-value=0.00018 Score=48.31 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=42.3
Q ss_pred ceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 340 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 340 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
+.++.+++++.++++.|.+++.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46788999999999999999999999999889999999999998754
No 212
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.52 E-value=0.00024 Score=76.18 Aligned_cols=64 Identities=25% Similarity=0.523 Sum_probs=50.4
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEE---CCEEe--eCCCCCe
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEWR--HDEHQPF 93 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w~--~d~~~~~ 93 (471)
-++|+ |...|++|+|+|+||+|+.. .+|.+. .+|.|++.++ +.+| ..|||.| ||.+. .||....
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~ 210 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQ 210 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceE
Confidence 56887 99999999999999999875 588763 6899999986 6677 3567776 78654 6776654
No 213
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.51 E-value=0.00039 Score=56.29 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=41.8
Q ss_pred EEEE-ecCCCceEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCE
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE 84 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~--~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~ 84 (471)
++|+ |...|++|.|+. |++|. ..++|.+. .+|.|++.++ +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEE--YGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc--cCCEEEEEECCCCCCC-EEEEEECCc
Confidence 5676 999999999999 77664 34588764 4799999985 56665 799999993
No 214
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00088 Score=68.75 Aligned_cols=128 Identities=13% Similarity=0.179 Sum_probs=88.5
Q ss_pred ceEecCC-CcHHHHHHHHHhcCCCEEEEEc--CCCcEEEEEeHHHHHHHHhcc-ccccCcc-----cccCHHHHHhcCCC
Q 012109 340 LAMLRPS-ASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDK-AYAHINL-----SEMTIHQALQLGQD 410 (471)
Q Consensus 340 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~dl~~~~~~~-~~~~l~~-----~~~~v~~~~~~~~~ 410 (471)
..++..+ .++.+...+|.+..++.+||+= +..+++|+|.++++...+... ..+.... ...+...+.....+
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 5555554 8999999999999999888883 345899999999988654321 1110000 00011111111000
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
.-...++|...+.++...++..-+++++.+-+.+.+.|.. +|++.|+||..|++++.
T Consensus 638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 1111236778899999999999999999999999988876 79999999999999874
No 215
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.50 E-value=0.00027 Score=75.97 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=48.4
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEEc-------CCceEEEEEEEC---CE--EeeCCCCC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-------PPGYHQYKFCVD---GE--WRHDEHQP 92 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~l-------~~g~~~ykf~vd---g~--w~~d~~~~ 92 (471)
-++|+ |...|++|+|+|+||+|++. .+|.+. ..|.|++.++- +.| ..|||.|. |. ++.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~--~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN--EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC--CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence 57888 99999999999999999875 589874 47999999874 344 36777773 54 46677554
No 216
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.48 E-value=0.0006 Score=54.69 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=43.0
Q ss_pred eeeEEEEecC----CCceEEEEe---ecCCCCCCC-CCcccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 25 LIPMRFVWPY----GGRSVFLSG---SFNRWSELL-PMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 25 ~~~~~f~~~~----~~~~V~v~G---sf~~W~~~~-~~~~~~-~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
.||++|.-.. .|++|+|+| ++.+|+... +|.... ...+.|++++.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4788888532 378999999 667998742 343321 235789999999999 79999998
No 217
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00066 Score=64.55 Aligned_cols=168 Identities=17% Similarity=0.244 Sum_probs=109.8
Q ss_pred CCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccc
Q 012109 247 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 326 (471)
Q Consensus 247 ~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~ 326 (471)
.+.++.+. ..+.||+++ -+++.++ ++| +++.+=|..+|+..-...+-. .|-..+....+
T Consensus 215 ~KTIvFit--HDLdEAlri-----G~rIaim----kdG---~ivQ~Gtp~eIl~~PAndYV~------~Fv~~v~~~~V- 273 (386)
T COG4175 215 KKTIVFIT--HDLDEALRI-----GDRIAIM----KDG---EIVQVGTPEEILLNPANDYVR------DFVRNVDRSRV- 273 (386)
T ss_pred CCeEEEEe--cCHHHHHhc-----cceEEEe----cCC---eEEEeCCHHHHHcCccHHHHH------HHHhcCChhhe-
Confidence 34444443 356777765 3567787 577 899999999998432211100 00001111100
Q ss_pred ccccccCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHH
Q 012109 327 TWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQA 404 (471)
Q Consensus 327 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~ 404 (471)
-...++|.+ ....-.+...-..+++.+.....+.+.+++..++.+|+++..++....
T Consensus 274 ---ltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~------------------ 332 (386)
T COG4175 274 ---LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA------------------ 332 (386)
T ss_pred ---eeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc------------------
Confidence 012333552 222223333445678888888877777888777899999998887641
Q ss_pred HhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 405 LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
+ ..++.++..++.+.+.+..+.+... .++|+| ++++++|+|++..++.+|.+
T Consensus 333 ~-------------~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvd-e~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 333 L-------------IDDVLTVDADTPLSEILARIRQAPC-PVAVVD-EDGRYVGIISRGELLEALAR 384 (386)
T ss_pred c-------------cccccccCccchHHHHHHHHhcCCC-ceeEEc-CCCcEEEEecHHHHHHHHhc
Confidence 1 2357788999999999988888776 588999 68999999999999999863
No 218
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.39 E-value=0.00049 Score=74.20 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=50.0
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCc-eEEEEEEE-CCEE--eeCCCCCee
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCV-DGEW--RHDEHQPFI 94 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~-l~~g-~~~ykf~v-dg~w--~~d~~~~~~ 94 (471)
.++|+ |...|++|+|+|+||+|.+. .+|.+. .+|.|+++++ +.+| .|.|++.. +|.| +.||.....
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~--~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~ 111 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR--ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYF 111 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccccccccc--CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEE
Confidence 57887 99999999999999999875 588774 5799999998 4555 56666654 5765 456655544
No 219
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.38 E-value=0.0019 Score=52.24 Aligned_cols=55 Identities=29% Similarity=0.516 Sum_probs=43.9
Q ss_pred eeeEEEEecC-----CCceEEEEeecC---CCCCCC-----CCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 25 LIPMRFVWPY-----GGRSVFLSGSFN---RWSELL-----PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 25 ~~~~~f~~~~-----~~~~V~v~Gsf~---~W~~~~-----~~~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
.|||+|.-.. .|++++|+|+-. +|++.. +|.. .....|++++.||.| .++|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~--~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC--PNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc--CCCCCEEEEEEcCCCCcEEEEEEE
Confidence 3889999653 478999999876 899732 5653 345789999999999 79999998
No 220
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.35 E-value=0.0012 Score=52.17 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=41.2
Q ss_pred eeEEEEecC---CCceEEEEeecC---CCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 26 IPMRFVWPY---GGRSVFLSGSFN---RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 26 ~~~~f~~~~---~~~~V~v~Gsf~---~W~~~~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
+.++|+-.+ .|++++|+|+-. +|++..+|... .+.|++.+.+|++ .++|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence 345555333 388999999874 89987777653 4679999999998 79999998
No 221
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.34 E-value=0.00043 Score=78.19 Aligned_cols=64 Identities=27% Similarity=0.598 Sum_probs=49.4
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEEC---CEE--eeCCCCC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GEW--RHDEHQP 92 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vd---g~w--~~d~~~~ 92 (471)
-++|+ |...|++|+|+|+||+|... .+|.+. ...|.|++.++ +.+|. .|||.|+ |.| +.||...
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~ 710 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAF 710 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceEC-CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcccc
Confidence 57888 99999999999999999875 478763 35799999986 78885 6888874 544 4555543
No 222
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.27 E-value=0.0006 Score=72.93 Aligned_cols=64 Identities=31% Similarity=0.604 Sum_probs=49.5
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEEc-CCceEEEEEEECC---EE--eeCCCCCe
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVDG---EW--RHDEHQPF 93 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~l-~~g~~~ykf~vdg---~w--~~d~~~~~ 93 (471)
-++|+ |...|++|+|+|+||+|... .+|.+. ..|.|++.++- .+| ..|||.|++ .+ +.||....
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~--~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~ 110 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL--DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSF 110 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCccccccccccc--CCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEE
Confidence 47887 99999999999999999875 588875 36999999874 445 468888854 33 67776654
No 223
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.10 E-value=0.0064 Score=61.13 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=64.2
Q ss_pred cCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHH
Q 012109 359 AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 438 (471)
Q Consensus 359 ~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m 438 (471)
++.+.+.|+|+ |+++..+...+..... ...+.+ + .....+++++++|.+++..+
T Consensus 298 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~ 351 (382)
T TIGR03415 298 RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-------------EAAPTVINPDTLMRDVLAAR 351 (382)
T ss_pred cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-------------cccCcccCCCCcHHHHHHHH
Confidence 78889999985 8888888765443211 123343 2 23577899999999999999
Q ss_pred HcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 439 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 439 ~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
.+.+. -++|+| + |+++|+|+..+++.+|.+
T Consensus 352 ~~~~~-~~~v~~-~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 352 HRTGG-AILLVE-N-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred hcCCC-CeEEee-C-CeEEEEEeHHHHHHHHhc
Confidence 88875 488898 4 999999999999999864
No 224
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.08 E-value=0.0021 Score=52.25 Aligned_cols=59 Identities=19% Similarity=0.427 Sum_probs=43.6
Q ss_pred CceeeEEEEec---CCCceEEEEeecC---CCCCC--CCCcccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 23 TVLIPMRFVWP---YGGRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 23 ~~~~~~~f~~~---~~~~~V~v~Gsf~---~W~~~--~~~~~~~--~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
+..++++|.-. ..|+.|+|+|+-. +|++. .+|.... ..+..|++.+.||++ .++|||++
T Consensus 4 ~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 4 ATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 34577777643 3489999999865 79874 4675421 235789999999998 69999996
No 225
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.00 E-value=0.0032 Score=50.07 Aligned_cols=53 Identities=19% Similarity=0.395 Sum_probs=40.9
Q ss_pred eEEEEec--CCCceEEEEeecC---CCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 27 PMRFVWP--YGGRSVFLSGSFN---RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 27 ~~~f~~~--~~~~~V~v~Gsf~---~W~~~~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
.+++.++ .+++.++|+|+-. +|+...+|... ..+.|++++.||++ .++|||++
T Consensus 4 ~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~--~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 4 TFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV--KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred EEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC--CCCCEEEEEEecCCCcEEEEEEE
Confidence 3444344 3468899999875 79987788753 46789999999999 59999998
No 226
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.99 E-value=0.002 Score=70.43 Aligned_cols=66 Identities=26% Similarity=0.492 Sum_probs=49.3
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCc-eEEEEEEEC-CEE--eeCCCCCe
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GEW--RHDEHQPF 93 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~-l~~g-~~~ykf~vd-g~w--~~d~~~~~ 93 (471)
-++|+ |...|++|+|+|+||+|... .+|.+. ...|.|++.++ +++| .|.|++..+ |.| +.||....
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~ 204 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-GESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFA 204 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEc-CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEE
Confidence 57888 99999999999999999864 588874 25799999986 6667 666666654 454 45555443
No 227
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.96 E-value=0.0028 Score=49.22 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=46.1
Q ss_pred EEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEEC-CEEeeCCCCCee
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD-GEWRHDEHQPFI 94 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vd-g~w~~d~~~~~~ 94 (471)
++|+ |...|++|.|+... |. ..+|.+. .+|.|+++++.-+|. .|+|.|+ |..+.||.+...
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~--~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~ 72 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRD--GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ 72 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccC--CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence 6777 99999999999743 54 4688874 579999998744665 4777776 578888888753
No 228
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.91 E-value=0.003 Score=52.56 Aligned_cols=57 Identities=21% Similarity=0.403 Sum_probs=43.4
Q ss_pred EEEE-ecCCCceEEEEeecCCCC---C--CCCCcccc-CCCCeEEEEEE-cCCceEEEEEEECCEEe
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWS---E--LLPMSPVE-GCPTVFQIIWS-IPPGYHQYKFCVDGEWR 86 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~---~--~~~~~~~~-~~~~~~~~~~~-l~~g~~~ykf~vdg~w~ 86 (471)
++|+ |...|++|.|+. |++|+ + .++|.+.+ +.+|.|++.++ +.+|. .|+|.|+|.|.
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~ 73 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE 73 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence 6776 999999999999 99886 2 24665431 23699999987 66775 79999998754
No 229
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.91 E-value=0.0057 Score=49.21 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=42.0
Q ss_pred eeeEEEEec-C---CCceEEEEeecC---CCCCCC--CCc-c-ccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 25 LIPMRFVWP-Y---GGRSVFLSGSFN---RWSELL--PMS-P-VEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 25 ~~~~~f~~~-~---~~~~V~v~Gsf~---~W~~~~--~~~-~-~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
.|+++|.-. . .|++|+|+|+-. +|++.. .|. . .......|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 467788753 2 389999999876 899753 222 1 11345689999999999 79999998
No 230
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.84 E-value=0.0043 Score=49.48 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=41.1
Q ss_pred eeEEEE----ecCCCceEEEEeecC---CCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 26 IPMRFV----WPYGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 26 ~~~~f~----~~~~~~~V~v~Gsf~---~W~~~--~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
|+++|. ....++.++|+|+.. +|++. ++|.. .....|++.+.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~--~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDP--TAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccC--CCCCeEEEEEEcCCCCeEEEEEEE
Confidence 455665 223478999999876 89964 46654 345789999999999 79999987
No 231
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.83 E-value=0.0057 Score=49.09 Aligned_cols=46 Identities=26% Similarity=0.487 Sum_probs=37.4
Q ss_pred CCCceEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 34 YGGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 34 ~~~~~V~v~Gs---f~~W~~~--~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
..|+.++|+|+ ..+|++. .+|... .+..|++++.||++ .++|||++
T Consensus 11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~--~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 11 QFGEAVYISGNCNQLGNWNPSKAKRMQWN--EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCCEEEEEeCcHHHCCCCccccCcccCC--CCCCEEEEEEECCCCcEEEEEEE
Confidence 34799999999 4589964 477653 35789999999988 69999998
No 232
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0073 Score=62.24 Aligned_cols=136 Identities=11% Similarity=0.098 Sum_probs=93.1
Q ss_pred eEEEEeCC-CCHHHHHHHHHHcCCcccccc-cCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhh
Q 012109 157 QVVALDID-LPVKQAFHILYEQGISMAPLW-DFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY 234 (471)
Q Consensus 157 ~vi~l~~~-~sv~~A~~~m~~~~i~~~pV~-d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 234 (471)
++++++.+ .++.+....|++.....-||+ +.+++.++|+++.+|+.-.+.......+....... ...+........
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~--~f~~~~~~~~~~ 634 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI--YFNDPSPSAVAG 634 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc--ccCCCCccccCC
Confidence 36666665 999999999999999988854 66678899999999998766543322222111111 000000000000
Q ss_pred hccccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHH
Q 012109 235 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 302 (471)
Q Consensus 235 ~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l 302 (471)
.+. .-...++|...++++...+++.-.++++.+-+++.+.|. .+| ++.|++|.+|++++.
T Consensus 635 ~~~-~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~----~~G---~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 635 IPS-RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT----KNG---ILLGIITKKDCLRHT 694 (696)
T ss_pred CCC-CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc----cCC---eeEeeeehHHHHHhh
Confidence 000 011234677788999999999999999999999999998 567 899999999999764
No 233
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.68 E-value=0.0086 Score=47.53 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=40.4
Q ss_pred EEEEe-cCCCceEEEEeecC---CCCCC--CCCccccCCCCeEEEEEEcCC--c-eEEEEEEE
Q 012109 28 MRFVW-PYGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPP--G-YHQYKFCV 81 (471)
Q Consensus 28 ~~f~~-~~~~~~V~v~Gsf~---~W~~~--~~~~~~~~~~~~~~~~~~l~~--g-~~~ykf~v 81 (471)
+.+.. ...|+.++|+|+.. +|++. ++|.... .++.|++.+.+|+ | .++|||++
T Consensus 4 f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 4 FQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 34443 34589999999986 89863 5776532 2688999999999 7 79999998
No 234
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.64 E-value=0.0056 Score=64.65 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=49.8
Q ss_pred EEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEECC-EEeeCCCCCeee
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG-EWRHDEHQPFIS 95 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg-~w~~d~~~~~~~ 95 (471)
++|+ |...|++|.|++. + +..+|.+. .+|.|+++++ +.+| +.|+|.||| ..+.||.+....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~--~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL--GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC--CCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 4677 9999999999973 3 34689884 4799999997 7778 789999999 788999888654
No 235
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.58 E-value=0.01 Score=63.65 Aligned_cols=65 Identities=28% Similarity=0.526 Sum_probs=49.4
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEEC---CE--EeeCCCCCe
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GE--WRHDEHQPF 93 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vd---g~--w~~d~~~~~ 93 (471)
-++|+ |...|++|.|+|+||+|... .+|.+. ...|.|++.++ ..+|. .|+|.|+ |. ++.||....
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~ 101 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFY 101 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEe-cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEee
Confidence 46788 99999999999999999865 478764 24699999987 35565 5888874 54 577776654
No 236
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.58 E-value=0.027 Score=45.09 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=37.3
Q ss_pred CCCceEEEEeec---CCCCCC--CCCccccCCCCeEEEEEEcCCc--eEEEEEEE
Q 012109 34 YGGRSVFLSGSF---NRWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV 81 (471)
Q Consensus 34 ~~~~~V~v~Gsf---~~W~~~--~~~~~~~~~~~~~~~~~~l~~g--~~~ykf~v 81 (471)
..++.|+|+|+. .+|++. ++|... ....|++.+.+|++ .++|||++
T Consensus 12 ~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 12 PKGQSVYVTGSSPELGNWDPQKALKLSDV--GFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCCEEEEEEChHHhCCCCccccccCCCC--CCCcEEEEEEeCCCCccEEEEEEE
Confidence 358999999986 489964 478763 46789999999986 59999998
No 237
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.57 E-value=0.0054 Score=67.15 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=46.0
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEE--CCE--EeeCCCC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV--DGE--WRHDEHQ 91 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~v--dg~--w~~d~~~ 91 (471)
-++|+ |...|++|+|+|+||+ ....+|.+. ...|.|++.+++..|.. |||.| ||. ...||..
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 56787 9999999999999997 334589875 35799999999777732 55555 784 4555544
No 238
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.83 E-value=0.032 Score=43.45 Aligned_cols=51 Identities=27% Similarity=0.591 Sum_probs=32.8
Q ss_pred CCceEEEEeecCCCCCC--CCCcccc--CCCCeEEEEEEcCCceEEEEEEE-CC--EE
Q 012109 35 GGRSVFLSGSFNRWSEL--LPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV-DG--EW 85 (471)
Q Consensus 35 ~~~~V~v~Gsf~~W~~~--~~~~~~~--~~~~~~~~~~~l~~g~~~ykf~v-dg--~w 85 (471)
++.+|++.+.|++|+.. .+|.+.. ...+.|++++.+|...|...|+- || .|
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 47889999999999865 3566542 22699999999999988888887 65 45
No 239
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=95.65 E-value=0.16 Score=41.40 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=38.9
Q ss_pred EecCCCceEEEEeecC---CCCCC--CCCcccc-----CCCCeEEEEEEcCCc----eEEEEEEE
Q 012109 31 VWPYGGRSVFLSGSFN---RWSEL--LPMSPVE-----GCPTVFQIIWSIPPG----YHQYKFCV 81 (471)
Q Consensus 31 ~~~~~~~~V~v~Gsf~---~W~~~--~~~~~~~-----~~~~~~~~~~~l~~g----~~~ykf~v 81 (471)
++.+.+++++|+|+-. +|++. ++|.... .....|++.+.||++ .++|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 4667789999999864 89865 3665531 134579999999996 69999997
No 240
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.64 E-value=0.04 Score=44.28 Aligned_cols=54 Identities=28% Similarity=0.535 Sum_probs=38.6
Q ss_pred EEEEecC-CCceEEEEeecC---CCCCC--CCCccc-cCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 28 MRFVWPY-GGRSVFLSGSFN---RWSEL--LPMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 28 ~~f~~~~-~~~~V~v~Gsf~---~W~~~--~~~~~~-~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
+.+.+.- -|++++|+|+-. +|++. .+|... ......|++.+.+|++ .++|||+|
T Consensus 4 f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 4 FKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 3444333 389999999875 79764 467432 1223479999999998 69999998
No 241
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.47 E-value=0.038 Score=59.40 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=46.3
Q ss_pred EEEE-ecCCCceEEEEeecCCCCC-----CCCCccccCCCCeEEEEEE-cCCceEEEEEEE--CCE--EeeCCCCCe
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV--DGE--WRHDEHQPF 93 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~-----~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~v--dg~--w~~d~~~~~ 93 (471)
++|+ |...|++|.|++ |++|.. .++|.+ ..+|.|++.++ +.+|. .|+|.| +|. ++.||....
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~--~~~gvw~~~i~~~~~g~-~Y~y~v~~~~~~~~~~DPya~~ 93 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKR--GENGVWSAVLEGDLHGY-FYTYQVCINGKWRETVDPYAKA 93 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEeccc--CCCCEEEEEECCCCCCC-EEEEEEEcCCCeEEEcCCCcce
Confidence 6888 999999999998 888853 357876 35799999998 45663 355555 564 588988764
No 242
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.054 Score=57.16 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=48.7
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhh
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY 305 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~ 305 (471)
.+|.+++.++..+.|..|.-+.+....++.+|++++ .+.. -++|.|..+.+...+..+
T Consensus 592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRH 649 (931)
T ss_pred eeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhh
Confidence 389999999999999999888877777999999953 3334 689999999999888654
No 243
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.25 Score=52.38 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=47.9
Q ss_pred cccccee-EEEEeCCCCHHHHHHHHHHcCCcccccccCC-CCeeeeecchHHHHHHHHH
Q 012109 151 ISEADLQ-VVALDIDLPVKQAFHILYEQGISMAPLWDFS-KARFVGVLSASDFILILRE 207 (471)
Q Consensus 151 ~~~~~~~-vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~-~~~~vGilt~~Di~~~l~~ 207 (471)
+.+.+.. +..+..++|..|.-+++....+++.|++|+. ..-++|.+..+.+...|++
T Consensus 590 VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 590 VEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 5555554 9999999999999999988889999988754 5667999999999988865
No 244
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.07 E-value=0.16 Score=47.33 Aligned_cols=113 Identities=17% Similarity=0.258 Sum_probs=72.7
Q ss_pred CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc--------ccccCc-ccccCHHHHHhcC
Q 012109 338 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK--------AYAHIN-LSEMTIHQALQLG 408 (471)
Q Consensus 338 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~--------~~~~l~-~~~~~v~~~~~~~ 408 (471)
+.++.|+.+ +.||+++- +++.|.+ +|+++-+-+..+++...++. ....+. +....+.+.+...
T Consensus 187 kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 187 KTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred CEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 356666664 77888775 4688887 79999999988887532221 100111 1123344443221
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.. -.--.+.......+++..+...+...+||+| ++|+++|.||..+|+..
T Consensus 259 ~~---------~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EP---------ADGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE 308 (309)
T ss_pred cc---------ccCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence 10 0111233444556688889999999999999 68999999999999875
No 245
>PLN02960 alpha-amylase
Probab=94.87 E-value=0.026 Score=61.50 Aligned_cols=56 Identities=27% Similarity=0.488 Sum_probs=41.5
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCCC-CCcc--c-cCCCCeEEEEEE--cCCc----e---EEEEEEEC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSELL-PMSP--V-EGCPTVFQIIWS--IPPG----Y---HQYKFCVD 82 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~-~~~~--~-~~~~~~~~~~~~--l~~g----~---~~ykf~vd 82 (471)
-+.|. |..||+.++|+|+||||+++. +|.+ . ...-|+|.++++ |..| . -+|.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 46666 999999999999999999874 4441 1 123589999987 7777 2 25777764
No 246
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.55 E-value=0.074 Score=51.03 Aligned_cols=93 Identities=13% Similarity=0.218 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccccccCCC
Q 012109 256 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 335 (471)
Q Consensus 256 ~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~ 335 (471)
...-..++..+.+.....+.++ +..+ +.+|+++..++....
T Consensus 292 ~~~~~~al~~~~~~~~~~~~~~---~~~~---~~~g~v~~~~~~~~~--------------------------------- 332 (386)
T COG4175 292 GDGPRVALKLLRDEGREYGYAV---DRGN---KFVGVVSIDSLVKAA--------------------------------- 332 (386)
T ss_pred ccccchhhhhhhhccchhhHHH---hccC---ceeeEEeccchhccc---------------------------------
Confidence 3344567788888777777777 2455 689999988876430
Q ss_pred CCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 336 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 336 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+...+.++..++++.+.+..+.+... .++|+|++++++|++++..++.++..
T Consensus 333 ~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 333 LIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 23356778899999999988876654 68899999999999999999987653
No 247
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=94.28 E-value=0.43 Score=39.73 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=55.6
Q ss_pred eeEEEEec----CCCceEEEEeecCCCCC-----CCCCccccCCCCeEEEEEEcCCc-eEEEEEEECCE-----------
Q 012109 26 IPMRFVWP----YGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE----------- 84 (471)
Q Consensus 26 ~~~~f~~~----~~~~~V~v~Gsf~~W~~-----~~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~----------- 84 (471)
.-|||-|. +....+.|.|+.|++.. ...|.+.+ +...|+.++.||.+ +-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~-gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLP-GTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-T-TSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCC-CCceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 35899999 55677999999999853 24777874 56899999999999 89999997433
Q ss_pred -----EeeCCCCCee-eCC---CCCeeeEEEeccC
Q 012109 85 -----WRHDEHQPFI-SSE---YGIVNTVLLATEP 110 (471)
Q Consensus 85 -----w~~d~~~~~~-~~~---~g~~nn~~~v~~~ 110 (471)
-+.||-||.. ... .|+..+++...+.
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 3678999863 333 4788888887544
No 248
>PLN02316 synthase/transferase
Probab=94.27 E-value=0.21 Score=56.17 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=45.0
Q ss_pred eeEEEEecC------CCceEEEEeecCCCCCCC----CCcccc-CCCCeEEEEEEcCCceEEEEEEE-CCE
Q 012109 26 IPMRFVWPY------GGRSVFLSGSFNRWSELL----PMSPVE-GCPTVFQIIWSIPPGYHQYKFCV-DGE 84 (471)
Q Consensus 26 ~~~~f~~~~------~~~~V~v~Gsf~~W~~~~----~~~~~~-~~~~~~~~~~~l~~g~~~ykf~v-dg~ 84 (471)
-++++.|+. ++.+|++.|.||+|.... .|.+.+ +.++.|.+++.+|+..|-.-|+. ||.
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~ 399 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP 399 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence 367777774 368899999999998532 333433 34569999999999999999996 663
No 249
>PLN02316 synthase/transferase
Probab=94.15 E-value=0.13 Score=57.77 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=48.5
Q ss_pred eEEEEecCC------CceEEEEeecCCCCCC---CCCccccCCCCeEEEEEEcCCceEEEEEEE-CCEEeeCC
Q 012109 27 PMRFVWPYG------GRSVFLSGSFNRWSEL---LPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-DGEWRHDE 89 (471)
Q Consensus 27 ~~~f~~~~~------~~~V~v~Gsf~~W~~~---~~~~~~~~~~~~~~~~~~l~~g~~~ykf~v-dg~w~~d~ 89 (471)
++++.|+.. ..+|.|.|.||+|... .+|.|.+..+++|++.+.+|+..|..-|+. ||.-.+|.
T Consensus 155 ~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDN 227 (1036)
T PLN02316 155 DIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDN 227 (1036)
T ss_pred eeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCcccccc
Confidence 455555543 5789999999999764 377777667889999999999999999997 77544443
No 250
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.93 E-value=0.22 Score=46.52 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=61.6
Q ss_pred CHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCc-ccccccccccccccccccCCCC
Q 012109 258 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP-ILKLPICAIPVGTWVPKIGEPN 336 (471)
Q Consensus 258 sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~-~~~~~v~~~~i~~~~~~v~~~m 336 (471)
.+.||+++ .+++.|+ ..| +++..-++.+|++.-...|....-... .....+....+...+... .
T Consensus 195 DidEA~kL-----adri~vm----~~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~---~ 259 (309)
T COG1125 195 DIDEALKL-----ADRIAVM----DAG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG---E 259 (309)
T ss_pred CHHHHHhh-----hceEEEe----cCC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc---c
Confidence 45566655 3557777 357 899999999988654332211000000 000111111111111000 0
Q ss_pred CCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 012109 337 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 385 (471)
Q Consensus 337 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~ 385 (471)
...--.+.......+++..+...+...+||+|++|+++|.+|+.+++..
T Consensus 260 ~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 260 PADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 0000112233344557777788899999999999999999999998763
No 251
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.83 E-value=0.23 Score=50.07 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=40.4
Q ss_pred CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 012109 339 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 387 (471)
Q Consensus 339 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~ 387 (471)
...++++++++.+++..+.+.+. -++|+|+ |+++|+|++.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 46788999999999999888775 4888885 99999999999998764
No 252
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.54 E-value=0.18 Score=54.83 Aligned_cols=55 Identities=22% Similarity=0.412 Sum_probs=41.8
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCC----CCCCccccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSE----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~----~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 85 (471)
-++|+ |...|++|.|+ -|++|.. ..+|.+ +.+|.|++.++ +.+|. .|+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPE--RTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc--CCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 36787 99999999997 5666542 347876 45799999997 67776 4999999853
No 253
>PLN02950 4-alpha-glucanotransferase
Probab=93.40 E-value=0.59 Score=52.31 Aligned_cols=60 Identities=30% Similarity=0.500 Sum_probs=43.6
Q ss_pred CCceeeEEEEec--C-CCceEEEEeecC---CCCCC--CCCcccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 22 DTVLIPMRFVWP--Y-GGRSVFLSGSFN---RWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 22 ~~~~~~~~f~~~--~-~~~~V~v~Gsf~---~W~~~--~~~~~~~-~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
.+..+.++|.-+ . -|++|+|+|+-. +|+.. .+|.... ..+..|++++.||+| ..+|||++
T Consensus 5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 344567777633 3 589999999985 79864 4775431 123489999999998 79999995
No 254
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=92.76 E-value=0.28 Score=55.69 Aligned_cols=65 Identities=11% Similarity=0.140 Sum_probs=48.9
Q ss_pred EEEE-ecCCCceEEEEe-ecCCCCC---CCCCccccCCCCeEEEEEE-cCCc-----eEEEEEEECC----EEeeCCCCC
Q 012109 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWS-IPPG-----YHQYKFCVDG----EWRHDEHQP 92 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~G-sf~~W~~---~~~~~~~~~~~~~~~~~~~-l~~g-----~~~ykf~vdg----~w~~d~~~~ 92 (471)
++|+ |...|++|.|++ ++++|.+ .++|.+ ...|.|++.++ +.+| -+.|+|.|++ ..+.||...
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~--~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKK--GDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEeccc--CCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 6787 999999999998 4556754 468887 45899999987 4432 4788888876 467888776
Q ss_pred ee
Q 012109 93 FI 94 (471)
Q Consensus 93 ~~ 94 (471)
.+
T Consensus 407 al 408 (1111)
T TIGR02102 407 SL 408 (1111)
T ss_pred EE
Confidence 43
No 255
>PLN02950 4-alpha-glucanotransferase
Probab=92.54 E-value=0.85 Score=51.04 Aligned_cols=69 Identities=22% Similarity=0.411 Sum_probs=50.1
Q ss_pred CCceeeEEEE--ec--CCCceEEEEeecC---CCCCC--CCCccccCCCCeEEEEEEcCCc--eEEEEEEE---CC--EE
Q 012109 22 DTVLIPMRFV--WP--YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV---DG--EW 85 (471)
Q Consensus 22 ~~~~~~~~f~--~~--~~~~~V~v~Gsf~---~W~~~--~~~~~~~~~~~~~~~~~~l~~g--~~~ykf~v---dg--~w 85 (471)
.+..++++|+ .+ ..|++|+|+|+-. +|++. .+|.. .....|++++.+|++ ..+|||++ +| .|
T Consensus 149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~--~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~W 226 (909)
T PLN02950 149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY--TGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSL 226 (909)
T ss_pred CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc--CCCCcEEEEEEecCCCceEEEEEEEEcCCCceEE
Confidence 4556778887 33 3589999999876 89875 35554 346889999999988 59999998 44 37
Q ss_pred eeCCCCC
Q 012109 86 RHDEHQP 92 (471)
Q Consensus 86 ~~d~~~~ 92 (471)
-..++.-
T Consensus 227 E~g~NR~ 233 (909)
T PLN02950 227 ELGVNRE 233 (909)
T ss_pred eeCCCce
Confidence 5555444
No 256
>PRK03705 glycogen debranching enzyme; Provisional
Probab=92.01 E-value=0.35 Score=52.28 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=40.9
Q ss_pred EEEE-ecCCCceEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCE
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE 84 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~--~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~ 84 (471)
+.|+ |...|++|.|+. |++|. ...+|.+ +.+|.|++.++ +.+|. .|+|.|+|.
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~G~-~Y~yrv~g~ 77 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPA--RSGDIWHGYLPGARPGL-RYGYRVHGP 77 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeee--ccCCEEEEEECCCCCCC-EEEEEEccc
Confidence 6787 999999999997 77653 2357865 35799999987 55554 599999884
No 257
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=91.32 E-value=0.96 Score=50.38 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=46.7
Q ss_pred eEEEE-ecCCCceEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEEC------CE----EeeCCCCC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQP 92 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~--~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vd------g~----w~~d~~~~ 92 (471)
-++|+ |...|++|.|++..++|. ...+|.+. ...|.|++.++ ...|. .|+|.|+ |+ ++.||...
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~ 213 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-STSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV 213 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-CCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence 46777 999999999997776664 23588763 24799999987 44554 4677764 54 47888776
Q ss_pred ee
Q 012109 93 FI 94 (471)
Q Consensus 93 ~~ 94 (471)
..
T Consensus 214 al 215 (898)
T TIGR02103 214 SL 215 (898)
T ss_pred eE
Confidence 54
No 258
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=88.96 E-value=2.1 Score=43.71 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=59.7
Q ss_pred CCceeeEEEEecCCC--------ceEEEEe--ecC--CCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEEC---C--
Q 012109 22 DTVLIPMRFVWPYGG--------RSVFLSG--SFN--RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD---G-- 83 (471)
Q Consensus 22 ~~~~~~~~f~~~~~~--------~~V~v~G--sf~--~W~~~~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~vd---g-- 83 (471)
.....-|||-|.+.. +.|+|-+ ..+ .+....+|.+.+ ....|+.++.||.. +-.|+|+++ +
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~-~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~ 113 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIA-GTDVWQWSTELSANWRGSYCFIPTERDDIF 113 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccC-CCceEEEEEEECcccEEEEEEEeccccccc
Confidence 345689999999742 3588732 222 233334788875 56889999999999 899999982 1
Q ss_pred -----------------------EEeeCCCCCee-eCCCCCeeeEEEeccCC
Q 012109 84 -----------------------EWRHDEHQPFI-SSEYGIVNTVLLATEPN 111 (471)
Q Consensus 84 -----------------------~w~~d~~~~~~-~~~~g~~nn~~~v~~~~ 111 (471)
.-+.||.||.. .+..|+-.|++.+....
T Consensus 114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~ 165 (411)
T PRK10439 114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAP 165 (411)
T ss_pred cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCC
Confidence 11478888853 34445556888876543
No 259
>PLN03244 alpha-amylase; Provisional
Probab=88.23 E-value=0.46 Score=51.36 Aligned_cols=56 Identities=27% Similarity=0.468 Sum_probs=39.7
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCCCCCcc---c-cCCCCeEEEEEE--cCCc----eE---EEEEEEC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSP---V-EGCPTVFQIIWS--IPPG----YH---QYKFCVD 82 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~---~-~~~~~~~~~~~~--l~~g----~~---~ykf~vd 82 (471)
-+.|. |..||+--+|+|+||||+++.-..+ . ...-|+|.+.++ |..| .| +|.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 45555 9999999999999999998743322 1 123589999987 7777 22 5666543
No 260
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=87.40 E-value=3.4 Score=33.57 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=39.9
Q ss_pred ceeeEEEEec-CCCceEEEEeecCC--CCC-CCCCccccCCC--CeEEEEEEcCCceEEEEEEE
Q 012109 24 VLIPMRFVWP-YGGRSVFLSGSFNR--WSE-LLPMSPVEGCP--TVFQIIWSIPPGYHQYKFCV 81 (471)
Q Consensus 24 ~~~~~~f~~~-~~~~~V~v~Gsf~~--W~~-~~~~~~~~~~~--~~~~~~~~l~~g~~~ykf~v 81 (471)
..+.++++=+ ...++|.|.-.-+. |.. ..+|.+....+ ..|+++++++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 5677777743 34688888665443 232 46888753222 35999999888999999998
No 261
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=86.91 E-value=2.4 Score=49.39 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=42.7
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC----CCCccccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL----LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~----~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 85 (471)
-|+|+ |...+++|.|+ -|++|... ++|.. +.++.|++.++ +.+|. .|+|.|+|.|
T Consensus 24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~--~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG--RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC--CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 37787 88899999998 89998643 45543 45799999876 77786 6999999844
No 262
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=86.21 E-value=0.64 Score=49.47 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=32.3
Q ss_pred EEEE-ecCCCceEEEEeecCCCCCCC-CCccccCCCCeEEEEEE
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWSELL-PMSPVEGCPTVFQIIWS 69 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~~~-~~~~~~~~~~~~~~~~~ 69 (471)
+.|+ |..+++.|.++|+||+|+... .+.. ....|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-KDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-ccccceeEEecC
Confidence 7777 999999999999999999864 4431 234688888877
No 263
>PLN02877 alpha-amylase/limit dextrinase
Probab=82.18 E-value=3.6 Score=46.17 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=42.4
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCC-----CCCCccccCCCCeEEEEEEcCCceEEEEEEEC------CE----EeeCCC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD------GE----WRHDEH 90 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~-----~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vd------g~----w~~d~~ 90 (471)
-++|+ |...|++|.|+- |++|.. ..+|. ..+|.|++.++-..--+.|+|.|+ |+ .+.||.
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~---~~~GVWsv~v~~~~~G~~Y~Y~V~v~~p~~g~~~~~~v~DPY 298 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK---ESNGVWSVEGPKSWEGCYYVYEVSVYHPSTGKVETCYANDPY 298 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc---CCCCEEEEEeccCCCCCeeEEEEeecccCCCcccccccCCcc
Confidence 56777 999999999995 666532 23564 458999999874333345777775 32 256776
Q ss_pred CCe
Q 012109 91 QPF 93 (471)
Q Consensus 91 ~~~ 93 (471)
...
T Consensus 299 A~a 301 (970)
T PLN02877 299 ARG 301 (970)
T ss_pred ceE
Confidence 654
No 264
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=78.71 E-value=4.8 Score=33.20 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=44.8
Q ss_pred CCceeeEEEEe-cCCCceEEEE-eecCCC----CC-CCCCccc--cCCCCeEEEEEEcCCceEEEEEEE--CC-EEeeCC
Q 012109 22 DTVLIPMRFVW-PYGGRSVFLS-GSFNRW----SE-LLPMSPV--EGCPTVFQIIWSIPPGYHQYKFCV--DG-EWRHDE 89 (471)
Q Consensus 22 ~~~~~~~~f~~-~~~~~~V~v~-Gsf~~W----~~-~~~~~~~--~~~~~~~~~~~~l~~g~~~ykf~v--dg-~w~~d~ 89 (471)
....+.++|+= .+..++|.|. |+=.+| .. ..+|.+. .+.-..|+++++++..+..|.|.| +| .|..+.
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~ 98 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGE 98 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEET
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeC
Confidence 45678888885 4567899885 666666 22 2478774 233458899999999988888887 34 344443
No 265
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=77.19 E-value=9.8 Score=29.10 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=41.6
Q ss_pred CceeeEEEEecCCC---ceEEEEeecC-CCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEE-C-CEEeeC
Q 012109 23 TVLIPMRFVWPYGG---RSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-D-GEWRHD 88 (471)
Q Consensus 23 ~~~~~~~f~~~~~~---~~V~v~Gsf~-~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~v-d-g~w~~d 88 (471)
+.-.-+.+.+.+|+ .+|.|.++=+ +|. +|.+. -+..|.+.-.++.|-+.+|+.. | |+++..
T Consensus 11 ~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~--wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 11 PYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRS--WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp TTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEE--CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecC--cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 45567778888775 5699995444 584 56774 3679999887778899999988 7 888764
No 266
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=68.98 E-value=16 Score=30.48 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=34.7
Q ss_pred eeEEEEecCC-CceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEE
Q 012109 26 IPMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (471)
Q Consensus 26 ~~~~f~~~~~-~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~yk 78 (471)
=+|+|.|... +.+|...++...|... .+.- +-+-.|+.+++- ||.|.|+
T Consensus 62 DTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~--~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 62 DTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA--GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CEEEEEECCCCCceEEEeCCCCccccc-cccc--CCCcceEEEecc-cceEEEE
Confidence 3789999999 9999999998544332 2221 224567777776 9999986
No 267
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.33 E-value=6.1 Score=41.84 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=40.4
Q ss_pred CCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEECCE----EeeCCCCCeeeCCCCCeeeEEEeccCCC
Q 012109 48 WSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE----WRHDEHQPFISSEYGIVNTVLLATEPNF 112 (471)
Q Consensus 48 W~~~~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~----w~~d~~~~~~~~~~g~~nn~~~v~~~~~ 112 (471)
|.. +...|..-.+|.|-+.++++|| .|.|+|.|+++ |-+......-.+ | .-.-|.|.....
T Consensus 85 WhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~--G-~~G~liI~~~~~ 150 (563)
T KOG1263|consen 85 WHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT--G-VFGALIINPRPG 150 (563)
T ss_pred ecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc--C-ceeEEEEcCCcc
Confidence 555 4444544446688899999999 79999999954 777666655433 3 444555555543
No 268
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=62.79 E-value=15 Score=38.44 Aligned_cols=108 Identities=12% Similarity=0.171 Sum_probs=70.9
Q ss_pred CceEecCCCcHH-HHHHHHHhcCCCEEEEEcCCC-cEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCccc
Q 012109 339 PLAMLRPSASLS-AALNLLVQAQVSSIPIVDDND-SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 416 (471)
Q Consensus 339 ~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~g-~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~ 416 (471)
.+.....+..+. +......+.+++++||.+.+. ..+|.+=...++++..... .+...++.+.+
T Consensus 215 ~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~----~~~~~~v~~~~----------- 279 (498)
T KOG2118|consen 215 DVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV----PLEPLPVSESA----------- 279 (498)
T ss_pred hheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc----ccccccchhhh-----------
Confidence 345556666665 555566689999999998532 2333322233333322111 12234555544
Q ss_pred ccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHH
Q 012109 417 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDI 465 (471)
Q Consensus 417 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Di 465 (471)
..+...++.++++.+.++.+.+.+.|.+.|.. ...-++++++.|+
T Consensus 280 --~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 280 --LLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL 324 (498)
T ss_pred --ccccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch
Confidence 45788899999999999999999988887777 4567899999887
No 269
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=52.73 E-value=48 Score=36.04 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc-cccccCcccc-----cCHHHHHhcCCCCCCcccccCCcc
Q 012109 349 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD-KAYAHINLSE-----MTIHQALQLGQDSYSPYELRSQRC 422 (471)
Q Consensus 349 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~-~~~~~l~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~ 422 (471)
+....+.+...+ ..++++|.+|.++.+....+++..... +......|.+ -.+.-++ ....+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al------------~~~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAA------------ISGQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHH------------hcCCc
Confidence 445555565555 678899999999999998888765543 2111111211 1122222 13456
Q ss_pred eEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeh
Q 012109 423 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 462 (471)
Q Consensus 423 ~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~ 462 (471)
+.|...+-..+.+ ..-.....||.|+ +|+++|+|+.
T Consensus 128 v~v~g~EH~~~~~---~~~~c~aaPI~d~-~G~liGvl~l 163 (638)
T PRK11388 128 VKTMGDQHFKQAL---HNWAFCATPVFDS-KGRLTGTIAL 163 (638)
T ss_pred eEEecHHHHHHhc---cCceEEeeEEEcC-CCCEEEEEEE
Confidence 6666665444443 3344578999994 7999999973
No 270
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=49.07 E-value=63 Score=26.54 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=26.0
Q ss_pred eeEEEEecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEE
Q 012109 26 IPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (471)
Q Consensus 26 ~~~~f~~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~yk 78 (471)
-+|+|.|..+++.|...-.-..+... .... +.+..|+.++. .+|.|.|.
T Consensus 23 dTV~f~n~d~~Hnv~~~~~~~p~g~~-~~~s--~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 23 DTVTFVPTDKGHNVETIKGMIPEGAE-AFKS--KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CEEEEEECCCCeeEEEccCCCcCCcc-cccC--CCCCEEEEEeC-CCEEEEEE
Confidence 37889998888776642111111111 1111 12455666666 57777775
No 271
>PRK10785 maltodextrin glucosidase; Provisional
Probab=45.88 E-value=78 Score=34.13 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=42.9
Q ss_pred CCceeeEEEEecCC--CceEEEEeecCCCCCCCCCccccCCC--CeEEEEEEcC--CceEEEEEEE--CCE
Q 012109 22 DTVLIPMRFVWPYG--GRSVFLSGSFNRWSELLPMSPVEGCP--TVFQIIWSIP--PGYHQYKFCV--DGE 84 (471)
Q Consensus 22 ~~~~~~~~f~~~~~--~~~V~v~Gsf~~W~~~~~~~~~~~~~--~~~~~~~~l~--~g~~~ykf~v--dg~ 84 (471)
..+.+.++++-+.+ .+.|.|.=..++.....+|.+....+ ..|+++++++ .+.+.|.|.+ +|+
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 55677888865433 57899876666544456888753222 3589999886 6788888887 554
No 272
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=45.24 E-value=27 Score=27.75 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=10.6
Q ss_pred CCeEEEEE-EcCCceEEEE
Q 012109 61 PTVFQIIW-SIPPGYHQYK 78 (471)
Q Consensus 61 ~~~~~~~~-~l~~g~~~yk 78 (471)
+..++.++ ++.||+|+|.
T Consensus 73 g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp T-EEEEEEEE-S-EEEEEB
T ss_pred CCEEEEEEcCCCCEEEEEE
Confidence 45566665 7899998873
No 273
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=42.12 E-value=51 Score=32.98 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=28.0
Q ss_pred EEEeecCCCCCCCCCccccCCCCeEEEEEE--cCCceEEEEEEECCE
Q 012109 40 FLSGSFNRWSELLPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE 84 (471)
Q Consensus 40 ~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~--l~~g~~~ykf~vdg~ 84 (471)
.+.|+|.+ ....+... -.+|.|+..++ .+||+|+.++.++|.
T Consensus 152 ~vvg~f~D--dG~g~DE~-p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDER-PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCC-CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 35666642 11122222 35799998865 689999999999985
No 274
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=40.93 E-value=35 Score=30.67 Aligned_cols=40 Identities=33% Similarity=0.813 Sum_probs=23.5
Q ss_pred CCCCCCCCCccccCCCCeEEEEEEc-CCceEEEEEE--EC--CEEeeC
Q 012109 46 NRWSELLPMSPVEGCPTVFQIIWSI-PPGYHQYKFC--VD--GEWRHD 88 (471)
Q Consensus 46 ~~W~~~~~~~~~~~~~~~~~~~~~l-~~g~~~ykf~--vd--g~w~~d 88 (471)
..|+. +||... .+..|+..+.+ .+|.|+|+.. +| +.|+++
T Consensus 55 ~~w~~-vpM~~~--gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPL--GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES--TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccC--CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 35987 799885 58899999886 4589999987 45 346664
No 275
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=40.16 E-value=55 Score=25.35 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=23.9
Q ss_pred CCCeEEEEEEcCCceEEEEEEECCEEeeCCCCC
Q 012109 60 CPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQP 92 (471)
Q Consensus 60 ~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~ 92 (471)
.+|.=++.+.|+||+|...-+. |.+.+-+..|
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~ 80 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDP 80 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCC
Confidence 3577788899999999999887 4444555554
No 276
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=39.63 E-value=62 Score=24.34 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 361 VSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 361 ~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
...+-|+|++|+.+|+++.++.+......
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 35677889999999999999999876553
No 277
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=38.32 E-value=94 Score=25.25 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=34.1
Q ss_pred CceEEEEeecCCCCCCCCCcc--cc--------CCCCeEEEEEEcCCc--------eEEEEEEECCEEeeC
Q 012109 36 GRSVFLSGSFNRWSELLPMSP--VE--------GCPTVFQIIWSIPPG--------YHQYKFCVDGEWRHD 88 (471)
Q Consensus 36 ~~~V~v~Gsf~~W~~~~~~~~--~~--------~~~~~~~~~~~l~~g--------~~~ykf~vdg~w~~d 88 (471)
.|+|.|-=+|++|.....+.. .. ..-..|...++|++. .+--+|.+.|+-.-|
T Consensus 33 eK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~eyWD 103 (113)
T PF03370_consen 33 EKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEYWD 103 (113)
T ss_dssp SEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEEEE
T ss_pred CeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEEec
Confidence 478999999999986433321 11 112478888888754 577788899963333
No 278
>PRK10301 hypothetical protein; Provisional
Probab=37.23 E-value=1.9e+02 Score=24.01 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=34.5
Q ss_pred CCceeeEEEEecCC--CceEEEEeecC-CCCCCCCCccccCCCCeEEEEE--EcCCceEEEEEEE---CCEE
Q 012109 22 DTVLIPMRFVWPYG--GRSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIW--SIPPGYHQYKFCV---DGEW 85 (471)
Q Consensus 22 ~~~~~~~~f~~~~~--~~~V~v~Gsf~-~W~~~~~~~~~~~~~~~~~~~~--~l~~g~~~ykf~v---dg~w 85 (471)
.++.|..+|.=+=. ...+.|.+.=- .|... +.......+..+.+.+ .|++|.|.-.|.| ||+-
T Consensus 44 ~P~~V~L~F~e~v~~~~s~i~v~~~~g~~v~~~-~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH~ 114 (124)
T PRK10301 44 APQALTLNFSEGIEPGFSGATITGPKQENIKTL-PAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHK 114 (124)
T ss_pred CCCEEEEEcCCCccccccEEEEEcCCCCEeccC-CccccCCCCcEEEEECCCCCCCccEEEEEEEEecCCCc
Confidence 45566666653322 34577765421 23321 1111122345566666 3889999999987 7753
No 279
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=36.69 E-value=1.1e+02 Score=25.00 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=25.7
Q ss_pred eEEEEecC--CCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEE
Q 012109 27 PMRFVWPY--GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (471)
Q Consensus 27 ~~~f~~~~--~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~yk 78 (471)
.|+|+|+. .+..|.-.+. ..|... .+ .. ..+..|+.++. .||.|.|.
T Consensus 51 TVtw~~~~d~~~HnV~s~~~-~~f~s~-~~-~~-~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 51 TVVWEWTGEGGGHNVVSDGD-GDLDES-ER-VS-EEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred EEEEEECCCCCCEEEEECCC-CCcccc-cc-cc-CCCCEEEEEec-CCcEEEEE
Confidence 67788875 3566654311 134321 11 11 12457888875 68888886
No 280
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=34.44 E-value=78 Score=23.80 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=18.7
Q ss_pred CCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 443 VRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 443 ~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
...+-||| ++|..+|++++++.++.
T Consensus 12 ~~~VrlI~-~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLID-EDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE--TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEEC-CCCcEeceEEHHHHHHH
Confidence 45677899 58999999999998764
No 281
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=30.75 E-value=38 Score=24.10 Aligned_cols=22 Identities=32% Similarity=0.743 Sum_probs=13.4
Q ss_pred EEcCCceEEEEEEE---CCEEeeCC
Q 012109 68 WSIPPGYHQYKFCV---DGEWRHDE 89 (471)
Q Consensus 68 ~~l~~g~~~ykf~v---dg~w~~d~ 89 (471)
-.||||+|.++-.+ +|.|..++
T Consensus 34 ~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 34 TNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp ES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EeCCCEEEEEEEEEECCCCCcCccc
Confidence 56999999998876 57777654
No 282
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=29.75 E-value=1.2e+02 Score=22.83 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=26.0
Q ss_pred eEEEEecCC-CceEE-EEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEE
Q 012109 27 PMRFVWPYG-GRSVF-LSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (471)
Q Consensus 27 ~~~f~~~~~-~~~V~-v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~yk 78 (471)
+++|.+..+ +.+|. ..|.+.++.-..++. ..+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~---~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMM---KKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCcccccccccc---CCCCEEEEECC-CCEEEEEE
Confidence 466777755 56664 445554433222221 22456776665 57877775
No 283
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=29.61 E-value=1.8e+02 Score=31.56 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=55.1
Q ss_pred HHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhh-ccccCCCCcccccccccccccccccccCCCCCCC
Q 012109 261 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY-FRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRP 339 (471)
Q Consensus 261 ~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~-~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~ 339 (471)
+..+.+...+ ..+.+. |.+| .++.+....+++..+... +... ..+....++.-.+++.. ....
T Consensus 63 ~l~~~l~~~~-~~~~l~---D~~G---~vL~~~g~~~~~~~~~~~~~~~G---~~w~E~~~GTnaig~al------~~~~ 126 (638)
T PRK11388 63 DAWEYMADRE-CALLIL---DETG---CILSRNGDPQTLQQLSALGFNDG---TYCAEGIIGTNALSLAA------ISGQ 126 (638)
T ss_pred HHHHHhcCCC-cEEEEE---cCCc---eEEEEeCCHHHHHHHHHcCCccC---CccchhccCcCHHHHHH------hcCC
Confidence 3334444444 566777 5678 899998888887665431 1110 01111122222222222 1234
Q ss_pred ceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEe
Q 012109 340 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 378 (471)
Q Consensus 340 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt 378 (471)
++.|.......+.+ ......+.||.|.+|+++|++.
T Consensus 127 pv~v~g~EH~~~~~---~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 127 PVKTMGDQHFKQAL---HNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ceEEecHHHHHHhc---cCceEEeeEEEcCCCCEEEEEE
Confidence 55565555444443 3445678999999999999996
No 284
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=29.48 E-value=33 Score=27.65 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=18.8
Q ss_pred CeEEEEEEcCCceEEEEEEECCEEeeCCCC
Q 012109 62 TVFQIIWSIPPGYHQYKFCVDGEWRHDEHQ 91 (471)
Q Consensus 62 ~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~ 91 (471)
-.|... |.|-|+|.|. +|.|+++-+.
T Consensus 58 QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 58 ELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred heeEec---CCCCccceec-CCeEEECCCC
Confidence 347666 4677888885 9999987543
No 285
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=29.08 E-value=32 Score=27.71 Aligned_cols=17 Identities=18% Similarity=0.593 Sum_probs=13.3
Q ss_pred ceEEEEEEECCEEeeCCC
Q 012109 73 GYHQYKFCVDGEWRHDEH 90 (471)
Q Consensus 73 g~~~ykf~vdg~w~~d~~ 90 (471)
|-|+|.|. ||+|++.-+
T Consensus 67 G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 67 GGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCccceec-CCEEEECCC
Confidence 66888884 999998744
No 286
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=28.68 E-value=1.4e+02 Score=23.38 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=10.6
Q ss_pred eEEEEecC-CCceEEEEe
Q 012109 27 PMRFVWPY-GGRSVFLSG 43 (471)
Q Consensus 27 ~~~f~~~~-~~~~V~v~G 43 (471)
.++|.|.. .+.++.+.-
T Consensus 26 tV~~~n~~~~~Hnv~~~~ 43 (99)
T PF00127_consen 26 TVTFVNNDSMPHNVVFVA 43 (99)
T ss_dssp EEEEEEESSSSBEEEEET
T ss_pred EEEEEECCCCCceEEEec
Confidence 56788854 356666655
No 287
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=28.58 E-value=1.2e+02 Score=31.88 Aligned_cols=109 Identities=12% Similarity=0.188 Sum_probs=68.5
Q ss_pred CceecCCCCCHH-HHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 249 PLVYAGPNDNLK-DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 249 ~~v~v~~~~sl~-~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
.+..+..+..+. +......+.+.+++||.+. +.. ..+|.+-....++++.... .+-..++..
T Consensus 215 ~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~--~~~---~~i~~~L~~~~~~~~~~~~-------~~~~~~v~~----- 277 (498)
T KOG2118|consen 215 DVFALDANTKLDRETVGEIVKHGYSRIPVYEQ--EPK---NKIGGLLVMNLLRLLQVEV-------PLEPLPVSE----- 277 (498)
T ss_pred hheeeccccccchHHHhhHhhcCcceeeeccC--ccc---chhhHHHHhhhhhhhcccc-------ccccccchh-----
Confidence 455556666665 5556677999999999942 222 3344322222233221110 111122222
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHH
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 382 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl 382 (471)
.+......++.++++.+.++.+.+.+.+.+.|.+ ...-+++++..|+
T Consensus 278 -------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 278 -------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL 324 (498)
T ss_pred -------hhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch
Confidence 2566788899999999999999887877777766 5567899999987
No 288
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=28.55 E-value=68 Score=29.36 Aligned_cols=16 Identities=6% Similarity=0.198 Sum_probs=11.8
Q ss_pred EEE-CCE--EeeCCCCCee
Q 012109 79 FCV-DGE--WRHDEHQPFI 94 (471)
Q Consensus 79 f~v-dg~--w~~d~~~~~~ 94 (471)
.+| ||+ |.+||+...+
T Consensus 66 ~iVsDGk~lW~YDpdleQV 84 (210)
T TIGR03009 66 AWICNGTAVYAYNGLAKTV 84 (210)
T ss_pred EEEECCCEEEEECCChhhE
Confidence 455 884 9999888764
No 289
>PF14044 NETI: NETI protein
Probab=26.92 E-value=69 Score=22.48 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=18.2
Q ss_pred EeCCCCCHHHHHHHHHcCCC
Q 012109 424 MCLPSDTLHKVMERLANPGV 443 (471)
Q Consensus 424 ~v~~~~~l~~a~~~m~~~~~ 443 (471)
.|.++.|+.++++.|.+.|+
T Consensus 3 eV~enETI~~CL~RM~~eGY 22 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY 22 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC
Confidence 47899999999999999987
No 290
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=26.46 E-value=65 Score=26.07 Aligned_cols=19 Identities=21% Similarity=0.649 Sum_probs=15.4
Q ss_pred CceEEEEEEECCEEeeCCCC
Q 012109 72 PGYHQYKFCVDGEWRHDEHQ 91 (471)
Q Consensus 72 ~g~~~ykf~vdg~w~~d~~~ 91 (471)
.|-|+|.|. +|+|++.-+.
T Consensus 69 sG~~hf~~~-~~~W~~~r~g 87 (109)
T PF01491_consen 69 SGPFHFDYD-DGKWIDTRDG 87 (109)
T ss_dssp TEEEEEEEE-SSSEEETTTT
T ss_pred CCceEEEEc-CCEEEECCCC
Confidence 788888888 9999987543
No 291
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=25.51 E-value=1.5e+02 Score=21.18 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=21.9
Q ss_pred CCCCeEEEEEEcCCceEEEEEEE--CCEEeeCCCCC
Q 012109 59 GCPTVFQIIWSIPPGYHQYKFCV--DGEWRHDEHQP 92 (471)
Q Consensus 59 ~~~~~~~~~~~l~~g~~~ykf~v--dg~w~~d~~~~ 92 (471)
+.+|.|... .|++|.|..+... +|--..++...
T Consensus 24 d~~G~~~f~-~L~~G~Y~l~E~~aP~GY~~~~~~~~ 58 (70)
T PF05738_consen 24 DENGKYTFK-NLPPGTYTLKETKAPDGYQLDDTPYE 58 (70)
T ss_dssp GTTSEEEEE-EEESEEEEEEEEETTTTEEEEECEEE
T ss_pred CCCCEEEEe-ecCCeEEEEEEEECCCCCEECCCceE
Confidence 346766554 6899999999987 67444444333
No 292
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=25.07 E-value=79 Score=34.00 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=30.0
Q ss_pred CCeEEEEEEcCCc-eEEEEEEEC---CE-EeeCCCCCeeeCCCCCeeeEEEeccC
Q 012109 61 PTVFQIIWSIPPG-YHQYKFCVD---GE-WRHDEHQPFISSEYGIVNTVLLATEP 110 (471)
Q Consensus 61 ~~~~~~~~~l~~g-~~~ykf~vd---g~-w~~d~~~~~~~~~~g~~nn~~~v~~~ 110 (471)
+|...+.++++|| .|.|+|.+. |. |-|....-+..+ ++..-|.|..+
T Consensus 98 DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~---Gl~GalII~~~ 149 (596)
T PLN00044 98 DGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAA---GGYGAITINNR 149 (596)
T ss_pred cCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhC---cCeeEEEEcCc
Confidence 4444467999999 799999994 43 777755444333 24445555544
No 293
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=25.04 E-value=91 Score=20.16 Aligned_cols=36 Identities=8% Similarity=0.272 Sum_probs=22.4
Q ss_pred CceEEEEeecCC-CCCCCCCccccCCCCeEEEEEEcC
Q 012109 36 GRSVFLSGSFNR-WSELLPMSPVEGCPTVFQIIWSIP 71 (471)
Q Consensus 36 ~~~V~v~Gsf~~-W~~~~~~~~~~~~~~~~~~~~~l~ 71 (471)
+..+||+|-+++ ....-.+...+-..+.|+..-++|
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 11 GNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp TTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 578999999998 333223334344567777665543
No 294
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=24.65 E-value=2.5e+02 Score=21.86 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=29.7
Q ss_pred EEEEecCCCceEEEEeecCCCCCCCCCccc-cCCCCeEEEEEEcCCceEEEEEEE
Q 012109 28 MRFVWPYGGRSVFLSGSFNRWSELLPMSPV-EGCPTVFQIIWSIPPGYHQYKFCV 81 (471)
Q Consensus 28 ~~f~~~~~~~~V~v~Gsf~~W~~~~~~~~~-~~~~~~~~~~~~l~~g~~~ykf~v 81 (471)
+.+.|.+++.+. +..-+.=.....+... .-..|.|++++..-.-+.++++-|
T Consensus 31 ~~i~w~~P~n~~--~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 31 FKVEWRGPGNKS--KQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred ccEEEeCCCCcc--ceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 577888876651 1212212222222221 134799999999876677777654
No 295
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=24.55 E-value=7e+02 Score=24.76 Aligned_cols=144 Identities=10% Similarity=0.107 Sum_probs=83.9
Q ss_pred CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccccc
Q 012109 249 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 328 (471)
Q Consensus 249 ~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~ 328 (471)
..+.|.+.+++.+....+.+++ +|....+.++....... ...+.-
T Consensus 46 ~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~-----------~~~lka--- 90 (342)
T COG1559 46 KTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPA-----------AGSLKA--- 90 (342)
T ss_pred eEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCc-----------cCCcCC---
Confidence 6789999999999999987764 33345566666544222 111222
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 329 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 329 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
....+.+.++..+++++|.+-+.....++=-+| .+.+++...+.....-..........+++...
T Consensus 91 ----------G~Y~l~~~ms~~~il~~L~~Gk~~~~~~~ipEG-----~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 155 (342)
T COG1559 91 ----------GEYRLRPGMSAADILKLLESGKSAQFKVTIPEG-----YTLKQIAKKLAEAPVLDGVLDGLAIAEIAARL 155 (342)
T ss_pred ----------ceeecCCCCCHHHHHHHHhcCccccceEecCCC-----ccHHHHHHHHhcchhhhhhhhhhhhHHHHHhc
Confidence 234577888999999998765543333331122 35677766554332211111223334444321
Q ss_pred CC--CCCcccccCCcceEeCCCCCHHHHHHHHHcCC
Q 012109 409 QD--SYSPYELRSQRCQMCLPSDTLHKVMERLANPG 442 (471)
Q Consensus 409 ~~--~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 442 (471)
.. ...+.++.-+.-..+.++++..++++.|.+.-
T Consensus 156 p~~~~~~~EG~l~PdTY~~~~g~~~~~Ii~~mi~~~ 191 (342)
T COG1559 156 PKLDKERLEGYLFPDTYEFTRGTSAEDIIKRMIKAM 191 (342)
T ss_pred CCCcCCCCceeecCceeeeCCCCCHHHHHHHHHHHH
Confidence 11 22234455566777889999999999997653
No 296
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=24.47 E-value=58 Score=25.80 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=14.2
Q ss_pred CceEEEEEEECCEEeeCCCC
Q 012109 72 PGYHQYKFCVDGEWRHDEHQ 91 (471)
Q Consensus 72 ~g~~~ykf~vdg~w~~d~~~ 91 (471)
.|-|+|.| ++|.|++.-+.
T Consensus 66 sGp~hfd~-~~~~Wi~~r~g 84 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRDG 84 (97)
T ss_pred CCCcceee-cCCEEEECCCC
Confidence 46688888 49999986543
No 297
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=23.24 E-value=85 Score=24.30 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=17.7
Q ss_pred eEEEEEEECCEEeeCCCCCeeeC
Q 012109 74 YHQYKFCVDGEWRHDEHQPFISS 96 (471)
Q Consensus 74 ~~~ykf~vdg~w~~d~~~~~~~~ 96 (471)
.-.+||++||+.+--...|-.-|
T Consensus 62 m~slRfL~dG~rI~~dqTP~dld 84 (103)
T COG5227 62 MSSLRFLFDGKRIDLDQTPGDLD 84 (103)
T ss_pred cceeEEEEcceecCCCCChhhcC
Confidence 67899999999887776664433
No 298
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=23.24 E-value=1.1e+02 Score=31.94 Aligned_cols=37 Identities=32% Similarity=0.576 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 429 DTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 429 ~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
..+..+.+...+.+-.-++|+. ++++.|+|-+.|+++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~--~~~~~GVI~LkDivK 449 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE--NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE--CCEEEEEEEehhhcc
Confidence 4578888888999989999998 699999999999975
No 299
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=22.96 E-value=2.3e+02 Score=22.95 Aligned_cols=53 Identities=13% Similarity=0.305 Sum_probs=33.1
Q ss_pred eEEEEecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCEE
Q 012109 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEW 85 (471)
Q Consensus 27 ~~~f~~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w 85 (471)
+..+++. ...++.|+|.+|++ +.-.. -.+|-|.+-..-+--.+.|-..+|+.|
T Consensus 22 ~~~lk~~---G~~~~~g~~g~W~~-iaA~e--t~~GgyqVlWk~~~~~~~~vW~tDsng 74 (109)
T PF07483_consen 22 GPQLKYN---GQPVVAGQFGGWQP-IAAEE--TSNGGYQVLWKNPGTDQFGVWNTDSNG 74 (109)
T ss_pred ccEEEEC---CEEEecCccCCcce-eeeEE--ecCCeeEEEEecCCCCeEEEEEecCCC
Confidence 3444444 25688999999998 33322 346778888885443455556666543
No 300
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=22.24 E-value=1.2e+02 Score=22.66 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=28.5
Q ss_pred EEEEecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEE-EEcCCc-eEEEEEEE----CCEEee
Q 012109 28 MRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQII-WSIPPG-YHQYKFCV----DGEWRH 87 (471)
Q Consensus 28 ~~f~~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~-~~l~~g-~~~ykf~v----dg~w~~ 87 (471)
+++.-| ..-+|++-|.=.+ ..+...+.. -+|++| .|.|++.+ ||+-..
T Consensus 5 itv~vP-adAkl~v~G~~t~-----------~~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG~~~t 58 (75)
T TIGR03000 5 ITVTLP-ADAKLKVDGKETN-----------GTGTVRTFTTPPLEAGKEYEYTVTAEYDRDGRILT 58 (75)
T ss_pred EEEEeC-CCCEEEECCeEcc-----------cCccEEEEECCCCCCCCEEEEEEEEEEecCCcEEE
Confidence 444455 3456777664321 223334433 679999 79999998 885443
No 301
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=21.94 E-value=90 Score=25.27 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=12.9
Q ss_pred EEEEEcCCCcEEEEEeH
Q 012109 363 SIPIVDDNDSLLDIYCR 379 (471)
Q Consensus 363 ~lpVvd~~g~lvGivt~ 379 (471)
..||.|.+|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 57999889999999874
No 302
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=21.61 E-value=2e+02 Score=24.26 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=28.4
Q ss_pred CceEEEEeecCCCCCCCCCccccCCCCeEEEEE---EcCCceEEEEEEE---CCEEeeCCC
Q 012109 36 GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIW---SIPPGYHQYKFCV---DGEWRHDEH 90 (471)
Q Consensus 36 ~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~---~l~~g~~~ykf~v---dg~w~~d~~ 90 (471)
++++....+..+. .|.| .+.-.|.+.+ .|+||+|+++-.+ ++.|....+
T Consensus 72 ~~k~~~~~~~~~~----~mAP--NS~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~~W~f~k~ 126 (140)
T PF11797_consen 72 SKKVLYTFKKENM----QMAP--NSNFNFPIPLGGKKLKPGKYTLKITAKSGKKTWTFTKD 126 (140)
T ss_pred CCeEEEEeeccCC----EECC--CCeEEeEecCCCcCccCCEEEEEEEEEcCCcEEEEEEE
Confidence 3455555555444 3334 1223343333 4789999999888 446877654
No 303
>PLN02792 oxidoreductase
Probab=21.41 E-value=77 Score=33.63 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=29.5
Q ss_pred CCCeEEEEEEcCCc-eEEEEEEEC---CE-EeeCCCCCeeeCCCCCeeeEEEec
Q 012109 60 CPTVFQIIWSIPPG-YHQYKFCVD---GE-WRHDEHQPFISSEYGIVNTVLLAT 108 (471)
Q Consensus 60 ~~~~~~~~~~l~~g-~~~ykf~vd---g~-w~~d~~~~~~~~~~g~~nn~~~v~ 108 (471)
.+|...+.++++|| .|.|+|.+. |. |-|.....+.. .|..--++.+.
T Consensus 84 ~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~--~Gl~G~liI~~ 135 (536)
T PLN02792 84 QDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKA--AGGYGSLRIYS 135 (536)
T ss_pred cCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhh--cccccceEEeC
Confidence 35555566999999 799999994 43 77776543332 34444444443
No 304
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=20.82 E-value=3.1e+02 Score=21.37 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCceeeEEEEecCC--CceEEEEeecC-CCCCCCCCccccCCCCeEEEEEE--cCCceEEEEEEE---CCEEe
Q 012109 22 DTVLIPMRFVWPYG--GRSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIWS--IPPGYHQYKFCV---DGEWR 86 (471)
Q Consensus 22 ~~~~~~~~f~~~~~--~~~V~v~Gsf~-~W~~~~~~~~~~~~~~~~~~~~~--l~~g~~~ykf~v---dg~w~ 86 (471)
.+..|..+|.=+-. ...+.|.+.-. .|....+ ........+.+.++ |++|.|.-.|.| ||+-+
T Consensus 18 ~P~~v~L~F~e~v~~~~s~v~v~~~~g~~v~~~~~--~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~DGH~~ 88 (97)
T PF04234_consen 18 APEEVTLTFSEPVEPGFSSVTVTDPDGKRVDLGEP--TVDGDGKTLTVPLPPPLPPGTYTVSWRVVSADGHPV 88 (97)
T ss_dssp --SSEEEEESS---CCC-EEEEEEEEETTSCTCEE--EEEESTTEEEEEESS---SEEEEEEEEEEETTSCEE
T ss_pred CCCEEEEEeCCCCccCccEEEEEcCCCceeecCcc--eecCCceEEEEECCCCCCCceEEEEEEEEecCCCCc
Confidence 45556666653333 57788887755 4543211 11123466777754 788999999998 88644
No 305
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=6.7e+02 Score=24.13 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=44.4
Q ss_pred eeEEEEecCCCce------EEEEeecCCCCCCCCCccccCC--------------CCeEEEEEEcCCceEEEEEEECCEE
Q 012109 26 IPMRFVWPYGGRS------VFLSGSFNRWSELLPMSPVEGC--------------PTVFQIIWSIPPGYHQYKFCVDGEW 85 (471)
Q Consensus 26 ~~~~f~~~~~~~~------V~v~Gsf~~W~~~~~~~~~~~~--------------~~~~~~~~~l~~g~~~ykf~vdg~w 85 (471)
=+.+|+|...+.+ +||+ =.+|++..||.+.+-. +..++..+.||.|+--| .+|=+.|
T Consensus 114 G~~~f~w~~TapH~t~~w~yYiT--K~~wdpnkPLt~~dlEL~p~~~i~~~g~~p~~~~~~~~~iP~~rtGy-~VI~~vW 190 (308)
T COG3397 114 GPQTFVWKATAPHNTAYWKYYIT--KPGWDPNKPLTWDDLELAPFCSITGVGLEPGKNYRHECTIPQDRTGY-HVIYAVW 190 (308)
T ss_pred CceEEEEEeecCCCCcceEEEEC--CCCCCCCCCccHHhcccccceeecccccCCCcceeEEEecCCCCccc-EEEEEEE
Confidence 3678888876533 5654 3589998888864322 12344444444332222 1233556
Q ss_pred eeCCCCCeeeCCCCCeeeEEEeccCCCC
Q 012109 86 RHDEHQPFISSEYGIVNTVLLATEPNFM 113 (471)
Q Consensus 86 ~~d~~~~~~~~~~g~~nn~~~v~~~~~~ 113 (471)
.. .|..+.++|++.|.-....
T Consensus 191 q~-------~Dt~n~Fyn~iDv~~~g~~ 211 (308)
T COG3397 191 QR-------ADTGNAFYNCIDVNFSGGS 211 (308)
T ss_pred Ee-------ccCCCcceEEEEEeccCCC
Confidence 54 3444578999999755444
Done!