Query 012109
Match_columns 471
No_of_seqs 535 out of 4217
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 02:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4n_C Nuclear protein SNF4; C 100.0 7.1E-34 2.4E-38 279.3 29.6 279 157-470 41-319 (323)
2 3kh5_A Protein MJ1225; AMPK, A 100.0 5.7E-32 2E-36 259.8 21.5 260 157-469 13-279 (280)
3 2qrd_G Protein C1556.08C; AMPK 100.0 8.7E-31 3E-35 258.5 30.1 285 150-470 23-314 (334)
4 2v8q_E 5'-AMP-activated protei 100.0 1.4E-30 4.8E-35 256.7 27.8 282 150-470 36-322 (330)
5 3ddj_A CBS domain-containing p 100.0 8.5E-32 2.9E-36 261.2 18.6 265 145-470 16-284 (296)
6 2yzq_A Putative uncharacterize 100.0 3.1E-29 1.1E-33 241.2 15.9 254 158-470 11-278 (282)
7 1z0n_A 5'-AMP-activated protei 99.9 7.1E-25 2.4E-29 173.8 11.3 88 21-112 6-93 (96)
8 2qlv_B Protein SIP2, protein S 99.9 2.6E-24 8.9E-29 199.7 11.6 90 24-113 2-91 (252)
9 3kh5_A Protein MJ1225; AMPK, A 99.9 2.5E-22 8.4E-27 192.5 20.3 195 245-470 9-204 (280)
10 3ddj_A CBS domain-containing p 99.9 9.6E-23 3.3E-27 197.4 13.6 192 242-470 22-213 (296)
11 3nme_A Ptpkis1 protein, SEX4 g 99.9 3.8E-22 1.3E-26 191.7 10.5 87 22-109 166-254 (294)
12 2v8q_E 5'-AMP-activated protei 99.9 2.9E-21 9.9E-26 189.9 15.6 207 243-470 38-250 (330)
13 2yzq_A Putative uncharacterize 99.8 4.4E-21 1.5E-25 184.1 11.0 174 244-466 5-179 (282)
14 3t4n_C Nuclear protein SNF4; C 99.8 4.3E-20 1.5E-24 180.9 17.2 185 157-388 123-320 (323)
15 2qrd_G Protein C1556.08C; AMPK 99.8 8.9E-20 3E-24 179.5 14.0 209 243-470 25-242 (334)
16 4esy_A CBS domain containing m 99.8 9.1E-20 3.1E-24 161.7 9.3 134 334-470 22-161 (170)
17 3i8n_A Uncharacterized protein 99.8 4.8E-18 1.6E-22 143.4 12.4 119 332-471 8-129 (130)
18 3k6e_A CBS domain protein; str 99.7 2.5E-18 8.7E-23 150.0 9.6 117 338-470 25-141 (156)
19 3nqr_A Magnesium and cobalt ef 99.7 2.5E-18 8.6E-23 144.5 9.0 117 334-471 7-126 (127)
20 3lv9_A Putative transporter; C 99.7 7.9E-18 2.7E-22 145.4 11.8 117 333-471 26-145 (148)
21 3hf7_A Uncharacterized CBS-dom 99.7 6.8E-18 2.3E-22 142.6 10.4 119 334-471 6-127 (130)
22 3kpb_A Uncharacterized protein 99.7 7.2E-18 2.5E-22 140.4 10.3 116 333-470 4-119 (122)
23 3jtf_A Magnesium and cobalt ef 99.7 4.6E-18 1.6E-22 143.4 8.6 115 334-471 9-126 (129)
24 3lhh_A CBS domain protein; str 99.7 2.4E-17 8.3E-22 146.2 13.5 118 332-471 44-164 (172)
25 1pbj_A Hypothetical protein; s 99.7 3.7E-17 1.3E-21 136.6 13.1 117 334-470 5-121 (125)
26 2nyc_A Nuclear protein SNF4; b 99.7 1.1E-16 3.8E-21 137.1 14.5 124 336-470 17-140 (144)
27 3lfr_A Putative metal ION tran 99.7 8.5E-18 2.9E-22 143.1 7.0 118 334-471 7-127 (136)
28 3gby_A Uncharacterized protein 99.7 1.8E-17 6.3E-22 139.4 8.9 119 332-470 7-125 (128)
29 2rih_A Conserved protein with 99.7 5.4E-17 1.8E-21 138.9 11.9 120 331-470 6-127 (141)
30 3k2v_A Putative D-arabinose 5- 99.7 6.2E-17 2.1E-21 139.9 12.3 118 332-468 30-149 (149)
31 3fv6_A YQZB protein; CBS domai 99.7 7E-17 2.4E-21 141.3 12.7 118 334-470 21-143 (159)
32 1y5h_A Hypothetical protein RV 99.7 2.9E-17 1E-21 139.0 9.7 118 334-470 12-130 (133)
33 2p9m_A Hypothetical protein MJ 99.7 1.4E-16 4.8E-21 135.5 13.9 119 333-470 11-135 (138)
34 2o16_A Acetoin utilization pro 99.7 1.3E-16 4.3E-21 139.8 13.7 124 332-470 7-134 (160)
35 3oco_A Hemolysin-like protein 99.7 2.7E-17 9.4E-22 142.9 8.9 114 336-471 26-143 (153)
36 2yzi_A Hypothetical protein PH 99.7 1.6E-16 5.3E-21 135.3 13.2 119 332-470 9-128 (138)
37 3ocm_A Putative membrane prote 99.7 1.3E-16 4.5E-21 141.6 13.2 116 333-471 39-157 (173)
38 4gqw_A CBS domain-containing p 99.7 6.2E-17 2.1E-21 140.0 10.8 125 332-470 7-142 (152)
39 2ef7_A Hypothetical protein ST 99.7 1.2E-16 4E-21 135.2 11.9 119 332-470 6-124 (133)
40 2uv4_A 5'-AMP-activated protei 99.7 2.3E-16 8E-21 136.8 13.5 122 338-470 29-150 (152)
41 3ctu_A CBS domain protein; str 99.7 6.3E-17 2.1E-21 141.0 9.3 119 336-470 21-141 (156)
42 1o50_A CBS domain-containing p 99.7 4.1E-16 1.4E-20 136.0 14.2 123 332-470 18-152 (157)
43 2pfi_A Chloride channel protei 99.7 3.4E-16 1.2E-20 137.2 13.4 128 334-470 17-146 (164)
44 3fhm_A Uncharacterized protein 99.7 2.2E-16 7.7E-21 138.9 12.2 117 336-470 30-149 (165)
45 3l2b_A Probable manganase-depe 99.7 9.7E-16 3.3E-20 143.9 17.3 200 242-469 9-242 (245)
46 1vr9_A CBS domain protein/ACT 99.7 2.7E-16 9.3E-21 144.5 13.2 157 242-450 15-171 (213)
47 3kxr_A Magnesium transporter, 99.7 4.5E-16 1.5E-20 142.0 13.7 164 192-389 9-175 (205)
48 3lqn_A CBS domain protein; csg 99.7 1.6E-16 5.6E-21 137.3 10.1 119 336-470 21-142 (150)
49 3sl7_A CBS domain-containing p 99.7 2E-16 6.7E-21 141.0 10.3 123 334-470 8-155 (180)
50 2rc3_A CBS domain; in SITU pro 99.7 2.2E-16 7.4E-21 134.0 10.1 119 334-471 10-131 (135)
51 4esy_A CBS domain containing m 99.7 1.4E-16 4.6E-21 141.1 9.1 137 242-387 20-161 (170)
52 4fry_A Putative signal-transdu 99.7 3.9E-16 1.3E-20 136.0 11.5 114 338-470 21-134 (157)
53 1pvm_A Conserved hypothetical 99.7 4.5E-16 1.5E-20 139.6 12.1 122 332-470 11-132 (184)
54 2emq_A Hypothetical conserved 99.7 5.1E-16 1.7E-20 135.2 12.1 123 332-470 13-138 (157)
55 3lhh_A CBS domain protein; str 99.7 1.2E-15 4.2E-20 135.2 14.5 121 239-388 41-164 (172)
56 1yav_A Hypothetical protein BS 99.6 8.5E-16 2.9E-20 134.2 12.2 119 336-470 20-141 (159)
57 3kxr_A Magnesium transporter, 99.6 6.9E-16 2.4E-20 140.8 12.0 115 332-470 56-173 (205)
58 3lv9_A Putative transporter; C 99.6 2E-15 6.8E-20 130.2 14.2 120 241-388 24-145 (148)
59 3oi8_A Uncharacterized protein 99.6 3.5E-16 1.2E-20 136.4 9.4 113 332-466 40-155 (156)
60 3kpb_A Uncharacterized protein 99.6 1E-15 3.5E-20 127.2 11.7 116 244-388 5-120 (122)
61 2d4z_A Chloride channel protei 99.6 4E-15 1.4E-19 139.3 16.3 139 331-471 14-246 (250)
62 3k6e_A CBS domain protein; str 99.6 1.1E-15 3.8E-20 133.2 10.6 119 247-388 24-142 (156)
63 1vr9_A CBS domain protein/ACT 99.6 8.8E-16 3E-20 141.1 10.4 120 327-470 10-129 (213)
64 3gby_A Uncharacterized protein 99.6 1.1E-15 3.6E-20 128.5 9.8 120 242-388 7-126 (128)
65 3jtf_A Magnesium and cobalt ef 99.6 2E-15 6.8E-20 127.1 11.4 117 243-388 8-126 (129)
66 2ef7_A Hypothetical protein ST 99.6 4.4E-15 1.5E-19 125.4 13.0 120 242-388 6-125 (133)
67 3hf7_A Uncharacterized CBS-dom 99.6 1.7E-15 5.7E-20 127.8 10.2 119 245-388 7-127 (130)
68 3i8n_A Uncharacterized protein 99.6 2.7E-15 9.1E-20 126.4 11.4 120 241-387 7-128 (130)
69 3lfr_A Putative metal ION tran 99.6 1.2E-15 4.2E-20 129.7 9.3 118 244-387 7-126 (136)
70 2j9l_A Chloride channel protei 99.6 1.7E-15 5.8E-20 135.6 10.4 133 336-470 17-164 (185)
71 3nqr_A Magnesium and cobalt ef 99.6 1.9E-15 6.7E-20 126.7 9.3 116 244-386 7-124 (127)
72 1pbj_A Hypothetical protein; s 99.6 4.2E-15 1.4E-19 124.0 11.1 118 244-388 5-122 (125)
73 3oi8_A Uncharacterized protein 99.6 7.9E-15 2.7E-19 127.7 13.1 117 239-383 37-155 (156)
74 2p9m_A Hypothetical protein MJ 99.6 7.9E-15 2.7E-19 124.6 12.1 120 243-388 11-136 (138)
75 2yzi_A Hypothetical protein PH 99.6 1.6E-14 5.4E-19 122.8 13.6 122 242-389 9-130 (138)
76 3oco_A Hemolysin-like protein 99.6 4.2E-15 1.5E-19 129.0 10.1 118 243-388 23-143 (153)
77 3l2b_A Probable manganase-depe 99.6 1.8E-14 6.1E-19 135.2 15.1 212 146-386 4-242 (245)
78 2o16_A Acetoin utilization pro 99.6 1.3E-14 4.3E-19 127.0 12.7 128 242-388 7-135 (160)
79 3fv6_A YQZB protein; CBS domai 99.6 1.3E-14 4.3E-19 126.8 12.5 120 243-388 20-144 (159)
80 3lqn_A CBS domain protein; csg 99.6 1.2E-14 4.2E-19 125.4 12.0 123 245-389 20-144 (150)
81 2rih_A Conserved protein with 99.6 1.5E-14 5.1E-19 123.5 12.4 118 243-386 8-126 (141)
82 3fhm_A Uncharacterized protein 99.6 8.7E-15 3E-19 128.7 11.2 117 248-389 35-151 (165)
83 2rc3_A CBS domain; in SITU pro 99.6 1.4E-14 4.6E-19 122.8 11.7 118 245-388 11-131 (135)
84 1pvm_A Conserved hypothetical 99.6 2E-14 6.9E-19 128.7 12.6 122 243-388 12-133 (184)
85 2nyc_A Nuclear protein SNF4; b 99.6 2.5E-14 8.6E-19 122.3 12.6 120 245-388 16-141 (144)
86 2oux_A Magnesium transporter; 99.6 7E-15 2.4E-19 141.2 10.0 115 332-470 139-258 (286)
87 3k2v_A Putative D-arabinose 5- 99.6 1.9E-14 6.3E-19 124.3 11.6 116 243-384 31-148 (149)
88 4gqw_A CBS domain-containing p 99.6 1.5E-14 5E-19 124.9 10.9 129 242-388 7-143 (152)
89 3ocm_A Putative membrane prote 99.6 6.1E-14 2.1E-18 124.3 14.7 122 239-389 35-158 (173)
90 2uv4_A 5'-AMP-activated protei 99.6 4.7E-14 1.6E-18 122.1 13.6 122 248-387 29-150 (152)
91 2yvy_A MGTE, Mg2+ transporter 99.5 1.3E-14 4.6E-19 138.8 10.7 115 332-470 137-256 (278)
92 1o50_A CBS domain-containing p 99.5 5.5E-14 1.9E-18 122.4 13.7 126 243-388 19-153 (157)
93 2emq_A Hypothetical conserved 99.5 6.3E-14 2.2E-18 121.8 13.9 126 242-389 13-140 (157)
94 2yvy_A MGTE, Mg2+ transporter 99.5 4.9E-14 1.7E-18 134.8 14.1 129 229-388 124-257 (278)
95 3ctu_A CBS domain protein; str 99.5 1.7E-14 5.7E-19 125.5 9.7 124 243-389 18-143 (156)
96 1y5h_A Hypothetical protein RV 99.5 1.1E-14 3.6E-19 123.0 7.3 116 245-386 13-129 (133)
97 4fry_A Putative signal-transdu 99.5 3E-14 1E-18 124.0 10.2 116 248-389 21-136 (157)
98 2d4z_A Chloride channel protei 99.5 1.1E-13 3.7E-18 129.6 14.4 143 241-388 14-246 (250)
99 2oux_A Magnesium transporter; 99.5 7.2E-14 2.5E-18 134.1 13.4 128 231-389 128-260 (286)
100 3sl7_A CBS domain-containing p 99.5 3.1E-14 1.1E-18 126.7 9.8 139 244-388 8-156 (180)
101 2pfi_A Chloride channel protei 99.5 6E-14 2.1E-18 122.8 10.6 124 244-388 17-147 (164)
102 4aee_A Alpha amylase, catalyti 99.5 2.3E-14 8E-19 154.1 9.5 80 23-105 15-102 (696)
103 1yav_A Hypothetical protein BS 99.5 4E-14 1.4E-18 123.5 9.1 122 245-388 19-142 (159)
104 3pc3_A CG1753, isoform A; CBS, 99.5 6.6E-14 2.3E-18 145.8 11.2 121 331-470 385-510 (527)
105 2zy9_A Mg2+ transporter MGTE; 99.5 2.5E-13 8.6E-18 139.2 15.3 164 194-388 109-277 (473)
106 2j9l_A Chloride channel protei 99.5 2.2E-13 7.5E-18 121.7 12.7 140 245-389 16-166 (185)
107 2zy9_A Mg2+ transporter MGTE; 99.4 2.7E-13 9.2E-18 139.0 10.9 116 331-470 156-276 (473)
108 3org_A CMCLC; transporter, tra 99.4 6.9E-14 2.4E-18 148.5 4.4 137 331-469 454-623 (632)
109 3usb_A Inosine-5'-monophosphat 99.4 8.9E-13 3E-17 135.9 11.7 113 335-470 118-233 (511)
110 3usb_A Inosine-5'-monophosphat 99.3 1.4E-11 4.9E-16 126.9 16.5 158 245-450 118-276 (511)
111 3pc3_A CG1753, isoform A; CBS, 99.3 3.5E-12 1.2E-16 132.8 11.4 124 240-389 384-512 (527)
112 1zfj_A Inosine monophosphate d 99.3 4.9E-12 1.7E-16 130.7 11.9 114 334-470 94-210 (491)
113 4fxs_A Inosine-5'-monophosphat 99.3 4E-13 1.4E-17 138.0 2.1 114 335-469 94-207 (496)
114 1me8_A Inosine-5'-monophosphat 99.3 3.7E-13 1.2E-17 139.0 0.2 113 336-470 103-220 (503)
115 1vrd_A Inosine-5'-monophosphat 99.3 4.2E-13 1.4E-17 138.7 0.4 114 334-470 99-214 (494)
116 4avf_A Inosine-5'-monophosphat 99.3 5.9E-13 2E-17 136.7 0.4 113 334-469 92-205 (490)
117 1me8_A Inosine-5'-monophosphat 99.2 1E-12 3.4E-17 135.7 -0.7 153 246-448 103-260 (503)
118 3org_A CMCLC; transporter, tra 99.2 1.1E-11 3.7E-16 131.6 7.2 138 242-386 455-623 (632)
119 4af0_A Inosine-5'-monophosphat 99.2 2.6E-12 9E-17 129.0 0.3 109 336-468 144-255 (556)
120 1zfj_A Inosine monophosphate d 99.2 3.1E-10 1.1E-14 117.1 15.7 116 245-388 95-211 (491)
121 4fxs_A Inosine-5'-monophosphat 99.1 3.6E-11 1.2E-15 123.5 4.9 112 245-386 94-207 (496)
122 4af0_A Inosine-5'-monophosphat 99.1 8.1E-12 2.8E-16 125.4 0.0 113 246-386 144-256 (556)
123 4aef_A Neopullulanase (alpha-a 99.1 2E-10 6.7E-15 122.6 9.8 78 25-105 16-98 (645)
124 1jcn_A Inosine monophosphate d 99.1 1.4E-12 4.6E-17 135.5 -6.8 115 334-469 112-231 (514)
125 4avf_A Inosine-5'-monophosphat 99.0 5E-11 1.7E-15 122.3 3.2 113 244-387 92-206 (490)
126 2cu0_A Inosine-5'-monophosphat 99.0 2E-11 6.9E-16 125.6 0.2 108 336-469 99-206 (486)
127 1vrd_A Inosine-5'-monophosphat 99.0 5.4E-11 1.8E-15 122.9 3.1 114 245-388 100-215 (494)
128 2cu0_A Inosine-5'-monophosphat 98.9 4.1E-10 1.4E-14 115.9 2.2 110 245-387 98-207 (486)
129 3ghd_A A cystathionine beta-sy 98.8 5.3E-09 1.8E-13 77.3 6.4 62 340-405 2-63 (70)
130 1jcn_A Inosine monophosphate d 98.8 1.8E-10 6.2E-15 119.4 -3.2 116 244-386 112-231 (514)
131 3ghd_A A cystathionine beta-sy 98.8 1.1E-08 3.8E-13 75.6 6.9 48 250-304 2-49 (70)
132 3fio_A A cystathionine beta-sy 98.5 1.3E-07 4.5E-12 69.5 6.2 62 340-405 2-63 (70)
133 3fio_A A cystathionine beta-sy 98.5 2.9E-07 9.8E-12 67.6 7.4 48 421-470 1-48 (70)
134 2z0b_A GDE5, KIAA1434, putativ 98.5 4.5E-07 1.6E-11 75.5 8.1 58 24-81 7-75 (131)
135 1ac0_A Glucoamylase; hydrolase 98.0 3.7E-06 1.2E-10 67.7 4.0 58 24-81 5-73 (108)
136 3c8d_A Enterochelin esterase; 97.7 0.0001 3.5E-09 73.7 9.8 87 25-113 30-155 (403)
137 3k1d_A 1,4-alpha-glucan-branch 97.6 0.00013 4.5E-09 77.8 8.6 66 27-94 137-210 (722)
138 1m7x_A 1,4-alpha-glucan branch 97.6 0.00019 6.5E-09 75.8 9.5 67 27-95 26-100 (617)
139 3aml_A OS06G0726400 protein; s 97.5 0.00015 5.2E-09 78.0 7.8 63 27-92 66-142 (755)
140 2laa_A Beta/alpha-amylase; SBD 96.5 0.0068 2.3E-07 47.5 7.2 63 27-91 6-75 (104)
141 1bf2_A Isoamylase; hydrolase, 96.4 0.0024 8.1E-08 68.9 5.2 54 28-84 18-84 (750)
142 3vgf_A Malto-oligosyltrehalose 96.3 0.0024 8.2E-08 66.5 4.6 61 27-93 10-73 (558)
143 1wzl_A Alpha-amylase II; pullu 96.1 0.0067 2.3E-07 63.5 6.7 61 22-82 19-87 (585)
144 2wsk_A Glycogen debranching en 96.1 0.0059 2E-07 64.8 6.2 54 27-84 20-77 (657)
145 2bhu_A Maltooligosyltrehalose 96.0 0.0067 2.3E-07 63.7 6.0 62 27-95 35-97 (602)
146 2vr5_A Glycogen operon protein 96.0 0.0075 2.6E-07 64.6 6.2 55 27-85 30-91 (718)
147 1qho_A Alpha-amylase; glycosid 95.6 0.024 8.3E-07 60.5 8.3 57 23-81 579-653 (686)
148 1j0h_A Neopullulanase; beta-al 95.6 0.0092 3.1E-07 62.5 4.9 61 22-82 19-89 (588)
149 2e8y_A AMYX protein, pullulana 95.2 0.026 8.8E-07 60.6 6.8 64 27-93 114-184 (718)
150 1vem_A Beta-amylase; beta-alph 95.2 0.035 1.2E-06 56.8 7.5 58 23-81 417-485 (516)
151 2fhf_A Pullulanase; multiple d 95.1 0.025 8.4E-07 63.0 6.6 66 28-95 306-385 (1083)
152 2vn4_A Glucoamylase; hydrolase 94.8 0.059 2E-06 56.2 8.2 59 23-81 494-563 (599)
153 3bmv_A Cyclomaltodextrin gluca 94.8 0.052 1.8E-06 57.8 8.0 59 23-81 581-651 (683)
154 1cyg_A Cyclodextrin glucanotra 94.7 0.057 2E-06 57.5 8.0 59 23-81 577-647 (680)
155 1d3c_A Cyclodextrin glycosyltr 94.7 0.062 2.1E-06 57.3 8.1 59 23-81 584-654 (686)
156 4aio_A Limit dextrinase; hydro 94.5 0.034 1.2E-06 61.1 5.8 55 28-83 138-194 (884)
157 3faw_A Reticulocyte binding pr 94.5 0.027 9.1E-07 61.4 4.7 65 28-94 146-224 (877)
158 2ya0_A Putative alkaline amylo 94.0 0.076 2.6E-06 56.8 7.0 65 28-94 26-106 (714)
159 2wan_A Pullulanase; hydrolase, 93.8 0.07 2.4E-06 58.7 6.4 63 27-93 326-398 (921)
160 1ea9_C Cyclomaltodextrinase; h 93.8 0.015 5.3E-07 60.7 1.1 60 22-81 19-85 (583)
161 3m07_A Putative alpha amylase; 93.2 0.12 4E-06 54.4 6.7 62 27-95 43-107 (618)
162 2ya1_A Putative alkaline amylo 91.9 0.16 5.6E-06 56.3 5.9 63 28-92 333-411 (1014)
163 1ji1_A Alpha-amylase I; beta/a 91.1 0.12 4.1E-06 54.6 3.7 56 27-83 31-96 (637)
164 1gcy_A Glucan 1,4-alpha-maltot 90.6 0.048 1.7E-06 56.2 0.0 57 24-81 429-495 (527)
165 4fch_A Outer membrane protein 90.2 0.24 8.4E-06 44.6 4.4 50 36-86 12-63 (221)
166 2wan_A Pullulanase; hydrolase, 90.2 0.42 1.4E-05 52.5 7.0 63 24-86 151-221 (921)
167 2c3v_A Alpha-amylase G-6; carb 88.0 1.4 4.6E-05 34.2 6.5 60 27-88 11-77 (102)
168 4fe9_A Outer membrane protein 69.6 5 0.00017 40.3 5.4 46 36-82 150-197 (470)
169 4dny_A Metalloprotease STCE; m 65.2 7.1 0.00024 31.2 4.2 24 67-91 99-123 (126)
170 4fe9_A Outer membrane protein 62.5 6.2 0.00021 39.6 4.4 54 36-90 260-320 (470)
171 2djm_A Glucoamylase A; beta sa 60.9 23 0.00078 27.5 6.4 53 36-88 33-95 (106)
172 2eef_A Protein phosphatase 1, 59.2 13 0.00045 31.1 5.1 51 36-86 60-124 (156)
173 4fem_A Outer membrane protein 51.2 10 0.00035 36.5 3.6 51 36-87 149-201 (358)
174 2jnz_A PHL P 3 allergen; timot 50.0 33 0.0011 26.7 5.6 61 22-88 24-90 (108)
175 2fqm_A Phosphoprotein, P prote 45.4 12 0.00042 26.0 2.2 27 43-73 1-27 (75)
176 1tif_A IF3-N, translation init 42.5 42 0.0014 24.4 4.8 29 361-389 13-41 (78)
177 4fch_A Outer membrane protein 39.3 11 0.00036 33.6 1.5 49 37-85 117-169 (221)
178 4aef_A Neopullulanase (alpha-a 38.9 39 0.0013 35.2 6.0 52 24-81 123-178 (645)
179 1mhx_A Immunoglobulin-binding 38.2 13 0.00044 24.7 1.4 13 81-93 48-60 (65)
180 1tif_A IF3-N, translation init 35.1 54 0.0018 23.8 4.4 25 443-468 13-37 (78)
181 2bem_A CBP21; chitin-binding p 32.6 1.3E+02 0.0046 25.2 7.3 72 27-108 76-167 (170)
182 1igd_A Protein G; immunoglobul 31.6 20 0.00067 24.1 1.4 13 81-93 44-56 (61)
183 1svj_A Potassium-transporting 31.6 20 0.00067 30.0 1.9 35 431-467 121-155 (156)
184 3fil_A Immunoglobulin G-bindin 31.4 13 0.00044 24.3 0.5 13 81-93 39-51 (56)
185 2w3j_A Carbohydrate binding mo 30.6 50 0.0017 26.9 4.2 59 21-83 48-114 (145)
186 4a02_A EFCBM33A, CBM33, chitin 28.2 1.9E+02 0.0064 24.2 7.3 72 27-108 75-164 (166)
187 3ft1_A PHL P 3 allergen; beta- 25.6 1.8E+02 0.0063 22.0 6.2 59 24-88 15-79 (100)
188 4aee_A Alpha amylase, catalyti 25.4 54 0.0018 34.5 4.4 56 24-82 132-187 (696)
189 4gln_D D-RFX001; heterochiral 24.8 29 0.00099 22.7 1.3 16 78-93 35-51 (56)
190 2rpv_A Immunoglobulin G-bindin 24.8 29 0.001 24.0 1.4 13 81-93 58-70 (75)
191 1ew4_A CYAY protein; friedreic 22.3 72 0.0025 24.6 3.4 17 73-91 68-84 (106)
192 2aan_A Auracyanin A; cupredoxi 21.7 1E+02 0.0034 24.6 4.5 17 27-43 44-64 (139)
193 2fwh_A Thiol:disulfide interch 20.7 1.5E+02 0.005 23.0 5.3 54 156-209 66-127 (134)
194 1bxv_A Plastocyanin; copper pr 20.6 74 0.0025 22.9 3.2 16 27-42 28-44 (91)
195 1idp_A Scytalone dehydratase; 20.6 32 0.0011 29.1 1.2 33 73-105 129-162 (172)
196 1pgx_A Protein G; immunoglobul 20.5 32 0.0011 24.4 0.9 13 81-93 52-64 (83)
No 1
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=100.00 E-value=7.1e-34 Score=279.34 Aligned_cols=279 Identities=25% Similarity=0.437 Sum_probs=218.2
Q ss_pred eEEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhhhc
Q 012109 157 QVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 236 (471)
Q Consensus 157 ~vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 236 (471)
++++++.++|+.+|++.|.+++++++||||.+.++++|++|..|++.++..++..+.. .+.++.+....+++....
T Consensus 41 ~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~--~~~l~~~~~~~v~~i~~~-- 116 (323)
T 3t4n_C 41 RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDK--FELVDKLQLDGLKDIERA-- 116 (323)
T ss_dssp EEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGG--GGGGGGCBHHHHHHHHHH--
T ss_pred cEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcch--hHHHHHHHHHHHHHHHHH--
Confidence 3999999999999999999999999999998778999999999999988766543222 234444445555554432
Q ss_pred cccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccc
Q 012109 237 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL 316 (471)
Q Consensus 237 ~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~ 316 (471)
..+|.++++++.+++++.+|++.|.+++++++||++.+...+ .++++|++|.+|+++++...... ....
T Consensus 117 ------~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~~~l~Givt~~di~~~l~~~~~~----~~~~ 185 (323)
T 3t4n_C 117 ------LGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-REIVVSVLTQYRILKFVALNCRE----THFL 185 (323)
T ss_dssp ------TTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-CEEEEEEEEHHHHHHHHHHHCGG----GGGC
T ss_pred ------hCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-ccceEEEecHHHHHHHHHhcCCc----hhhh
Confidence 225788999999999999999999999999999996422222 11299999999999988755332 1233
Q ss_pred ccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcc
Q 012109 317 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 396 (471)
Q Consensus 317 ~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~ 396 (471)
..++.++.++ |.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++++..+.+..+
T Consensus 186 ~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~-- 254 (323)
T 3t4n_C 186 KIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL-- 254 (323)
T ss_dssp CSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHT--
T ss_pred hCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhc--
Confidence 3445444221 56789999999999999999999999999999999999999999999998765432222
Q ss_pred cccCHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 397 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 397 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
..++.++|..... ...++++|.+++++.+|+++|.+++++++||+| ++|+++|+||.+||+++++
T Consensus 255 -~~~v~~~m~~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~l~Giit~~Dil~~l~ 319 (323)
T 3t4n_C 255 -SLSVGEALMRRSD-------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319 (323)
T ss_dssp -TSBHHHHGGGSCT-------TCCCCEEECTTCBHHHHHHHHHHSCCCEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred -cCCHHHHHhhccc-------cCCCCEEECCCCCHHHHHHHHHHhCCCEEEEEC-CCCcEEEEEEHHHHHHHHH
Confidence 4688888844110 012689999999999999999999999999999 5899999999999999986
No 2
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=100.00 E-value=5.7e-32 Score=259.83 Aligned_cols=260 Identities=14% Similarity=0.296 Sum_probs=204.0
Q ss_pred eEEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhhhc
Q 012109 157 QVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 236 (471)
Q Consensus 157 ~vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 236 (471)
+++++++++|+.+|++.|.+++++++||+|++.++++|++|..||+.++..... ...+.......+..
T Consensus 13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~~~~~~~~~~------ 80 (280)
T 3kh5_A 13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIREKHERNFLA------ 80 (280)
T ss_dssp CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHHTTSTTCHHH------
T ss_pred CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhhhccccchhH------
Confidence 389999999999999999999999999999767899999999999987622110 00011000000000
Q ss_pred cccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccc
Q 012109 237 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL 316 (471)
Q Consensus 237 ~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~ 316 (471)
.....++.+|.++++++.+++++.+|++.|.+++++++||+ +++| +++|++|..|+++++......
T Consensus 81 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~~-------- 146 (280)
T 3kh5_A 81 AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIV---NDEN---QLISLITERDVIRALLDKIDE-------- 146 (280)
T ss_dssp HTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEE---CTTC---BEEEEEEHHHHHHHHGGGSCT--------
T ss_pred HhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEE---cCCC---EEEEEEEHHHHHHHHhhcCCC--------
Confidence 00223456899999999999999999999999999999999 4567 899999999999887643211
Q ss_pred ccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-cC-
Q 012109 317 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA-HI- 394 (471)
Q Consensus 317 ~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~-~l- 394 (471)
..++.++ |.++++++.+++++.++++.|.+++++++||+ ++|+++|+||.+|+++.+...... .+
T Consensus 147 ~~~v~~~------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~~~~~~~ 213 (280)
T 3kh5_A 147 NEVIDDY------------ITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDWAFNHMQ 213 (280)
T ss_dssp TCBSGGG------------CBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHHHHHHHH
T ss_pred CCCHHHH------------hCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhhhhhhhc
Confidence 1234444 77889999999999999999999999999999 589999999999999876432110 00
Q ss_pred -----cccccCHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 395 -----NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 395 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
.....++.++| .+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||++||++++
T Consensus 214 ~~~~~~~~~~~v~~~m-------------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 214 TGNVREITNVRMEEIM-------------KRDVITAKEGDKLKKIAEIMVTNDIGALPVVD-ENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp SCCTHHHHHCBHHHHS-------------BSSCCCBCTTCBHHHHHHHHHHHTCCEEEEEC-TTCBEEEEEEHHHHGGGG
T ss_pred ccchhhhhCCcHHHHh-------------cCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC-CCCeEEEEEeHHHHHHhh
Confidence 00124555544 67899999999999999999999999999999 578999999999999886
No 3
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=100.00 E-value=8.7e-31 Score=258.51 Aligned_cols=285 Identities=21% Similarity=0.410 Sum_probs=217.2
Q ss_pred ccccccee---EEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCC-ChhhHhhhcH
Q 012109 150 RISEADLQ---VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL-TEEELETHTI 225 (471)
Q Consensus 150 ~~~~~~~~---vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~-~~~~l~~~~i 225 (471)
++.+.+.. +++++.++|+.+|++.|.+++++++||+|.+.++++|+++.+|++.++.......... ..+.+....+
T Consensus 23 ~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (334)
T 2qrd_G 23 TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRL 102 (334)
T ss_dssp BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCBH
T ss_pred chhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhch
Confidence 45566543 9999999999999999999999999999987689999999999998875542210000 0123334455
Q ss_pred HHHHHHHhhhccccCCCCcccCCCc--eecCCCCCHHHHHHHHHhCCccEEEEEecCCCCC-CCCeEEEeeehhhHHHHH
Q 012109 226 SAWKEGKAYLNRQIDSHGKAFPRPL--VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDG-SFPQLLHIASLSGILKCV 302 (471)
Q Consensus 226 ~~~~~~~~~~~~~~~~~g~im~~~~--v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g-~~~~l~Givt~~dil~~l 302 (471)
..+++.... +|.+++ +++.+++++.+|++.|.+++++++||++. ..+ ..+.++|++|..|+++++
T Consensus 103 ~~i~~~l~~----------im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~~~~~~~Givt~~dl~~~~ 170 (334)
T 2qrd_G 103 LGLREVERK----------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV--DGETGSEMIVSVLTQYRILKFI 170 (334)
T ss_dssp HHHHHHHHH----------HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEE--ETTTTEEEEEEEEEHHHHHHHH
T ss_pred hhHHHHHHh----------hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeC--CCCcCccceEEEeeHHHHHHHH
Confidence 555554332 466667 99999999999999999999999999953 222 000299999999999987
Q ss_pred hhhccccCCCCcccccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHH
Q 012109 303 CRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 382 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl 382 (471)
...... ......++.++ ..+|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+
T Consensus 171 ~~~~~~----~~~~~~~v~~l---------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl 237 (334)
T 2qrd_G 171 SMNCKE----TAMLRVPLNQM---------TIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDV 237 (334)
T ss_dssp HHHCGG----GGGCCCBGGGS---------SCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHH
T ss_pred Hhhccc----hhhhhCcHHHh---------CCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHH
Confidence 643211 01122334332 11367789999999999999999999999999999988999999999999
Q ss_pred HHHHhccccccCcccccCHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeh
Q 012109 383 TALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 462 (471)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~ 462 (471)
++.+..+.+.. ...++.++|.... .+ .+++.+|.+++++.+|+++|.+++++++||+| ++|+++|+||.
T Consensus 238 ~~~~~~~~~~~---~~~~v~~~m~~~~-----~~--~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~l~Giit~ 306 (334)
T 2qrd_G 238 MHLIQDGDYSN---LDLSVGEALLKRP-----AN--FDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD-ENLKLEGILSL 306 (334)
T ss_dssp HHHHTTSCGGG---GGSBHHHHHTTCC-----TT--CCCCCEECTTCBHHHHHHHHHHSCCCEEEEEC-TTCBEEEEEEH
T ss_pred HHHhhcccccc---ccCcHHHHHhccc-----cc--CCCCEEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeH
Confidence 99876543211 2467888874210 00 03789999999999999999999999999999 57999999999
Q ss_pred HHHHHHhh
Q 012109 463 SDIFKFLL 470 (471)
Q Consensus 463 ~Dil~~l~ 470 (471)
+||++++.
T Consensus 307 ~dil~~~~ 314 (334)
T 2qrd_G 307 ADILNYII 314 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
No 4
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.98 E-value=1.4e-30 Score=256.66 Aligned_cols=282 Identities=32% Similarity=0.538 Sum_probs=221.4
Q ss_pred cccccc--e-eEEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhhcHH
Q 012109 150 RISEAD--L-QVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 226 (471)
Q Consensus 150 ~~~~~~--~-~vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~ 226 (471)
++.+.+ . ++++++.++|+.+|++.|.+++++++||+|.+.++++|++|..|++.++......+. .....+....+.
T Consensus 36 ~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~-~~~~~l~~~~~~ 114 (330)
T 2v8q_E 36 RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL-VQIYELEEHKIE 114 (330)
T ss_dssp BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT-TTCCCGGGCBHH
T ss_pred cHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc-cchhHHhhccHH
Confidence 567777 3 399999999999999999999999999999876799999999999987754321111 011223344455
Q ss_pred HHHHHHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCC-CCCCCeEEEeeehhhHHHHHhhh
Q 012109 227 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ-DGSFPQLLHIASLSGILKCVCRY 305 (471)
Q Consensus 227 ~~~~~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~-~g~~~~l~Givt~~dil~~l~~~ 305 (471)
.+.... +.+|.++++++.+++++.+|+++|.+++++++||+ ++ +| +++|++|..|+++++...
T Consensus 115 ~~~~~~----------~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~~---~~~Givt~~dl~~~~~~~ 178 (330)
T 2v8q_E 115 TWREVY----------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVI---DPESG---NTLYILTHKRILKFLKLF 178 (330)
T ss_dssp HHHHHH----------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEE---CTTTC---CEEEEECHHHHHHHHHHH
T ss_pred HHHHHH----------hhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEE---eCCCC---cEEEEEcHHHHHHHHHHH
Confidence 444322 34689999999999999999999999999999999 34 67 899999999999988654
Q ss_pred ccccCCCCcccccccccccccccccccCCCCC-CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 306 FRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 306 ~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
..... ...++..++.++.+ |. ++++++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++
T Consensus 179 ~~~~~-~~~~~~~~v~~~~v----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~ 247 (330)
T 2v8q_E 179 ITEFP-KPEFMSKSLEELQI----------GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVIN 247 (330)
T ss_dssp SCSSS-CCGGGGSBHHHHTC----------SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGG
T ss_pred hhccC-chhhhcCCHHHhcc----------cCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHH
Confidence 32111 11123344444422 33 57889999999999999999999999999998899999999999998
Q ss_pred HHhccccccCcccccCHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHH
Q 012109 385 LAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSD 464 (471)
Q Consensus 385 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~D 464 (471)
......+.. ...++.+++.... .|.+++++|.+++++.+|+++|.+++++++||+| ++|+++|+||..|
T Consensus 248 ~~~~~~~~~---~~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~l~Giit~~D 316 (330)
T 2v8q_E 248 LAAEKTYNN---LDVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSD 316 (330)
T ss_dssp GGGSSCCCC---CSSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHH
T ss_pred HHhcccccc---ccCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEc-CCCcEEEEEeHHH
Confidence 765432222 1468888875321 3457899999999999999999999999999999 5799999999999
Q ss_pred HHHHhh
Q 012109 465 IFKFLL 470 (471)
Q Consensus 465 il~~l~ 470 (471)
|++++.
T Consensus 317 il~~~~ 322 (330)
T 2v8q_E 317 ILQALV 322 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 5
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.98 E-value=8.5e-32 Score=261.21 Aligned_cols=265 Identities=11% Similarity=0.142 Sum_probs=213.2
Q ss_pred cccccccccccee-EEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhh
Q 012109 145 TEAAERISEADLQ-VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 223 (471)
Q Consensus 145 ~~~~~~~~~~~~~-vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~ 223 (471)
....+++.+.+.. ++++++++||.+|++.|.+++++++||+| ++++|++|..||+..+..... . ..
T Consensus 16 ~~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~----~------~~ 82 (296)
T 3ddj_A 16 YFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCK----D------SC 82 (296)
T ss_dssp TTCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC-------------C
T ss_pred hhcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhccccc----c------cc
Confidence 4666789998885 99999999999999999999999999998 799999999999977632110 0 00
Q ss_pred cHHHHHHHHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHh
Q 012109 224 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 303 (471)
Q Consensus 224 ~i~~~~~~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~ 303 (471)
....+... ....++.+|.++++++.+++++.+|+++|.+++++++||+ ++++ +++|++|..|+++++.
T Consensus 83 ~~~~~~~~------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVv---d~~~---~lvGivt~~dl~~~~~ 150 (296)
T 3ddj_A 83 SQGDLYHI------STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVV---DIND---KPVGIVTEREFLLLYK 150 (296)
T ss_dssp CHHHHHHH------HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHGGGGG
T ss_pred cchhhHHH------hcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEEeHHHHHHhhh
Confidence 01111110 1223456898999999999999999999999999999999 4557 8999999999987654
Q ss_pred hhccccCCCCcccccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHH
Q 012109 304 RYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 383 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~ 383 (471)
... ...++.++ |.++++++.+++++.++++.|.+++++++||+|++|+++|+||.+|++
T Consensus 151 ~~~---------~~~~v~~~------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~ 209 (296)
T 3ddj_A 151 DLD---------EIFPVKVF------------MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAI 209 (296)
T ss_dssp GSC---------CCCBHHHH------------SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred ccc---------ccccHHHh------------hcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHH
Confidence 321 12344444 778899999999999999999999999999999999999999999999
Q ss_pred HHHhccccccC---cccccCHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEE
Q 012109 384 ALAKDKAYAHI---NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIV 460 (471)
Q Consensus 384 ~~~~~~~~~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiI 460 (471)
+.+..... .+ .....++.++| .+++.+|.+++++.+|+++|.+++++++||+| ++|+++|+|
T Consensus 210 ~~~~~~~~-~~~~~~~~~~~v~~~m-------------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Gii 274 (296)
T 3ddj_A 210 KQLAKAVD-KLDPDYFYGKVVKDVM-------------VTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGII 274 (296)
T ss_dssp HHHHHHHH-HTCTHHHHTCBHHHHS-------------BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEE
T ss_pred HHHHHHHh-hcChhhhcCcCHHHHh-------------CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEE
Confidence 87653211 00 01234666655 66899999999999999999999999999999 589999999
Q ss_pred ehHHHHHHhh
Q 012109 461 SLSDIFKFLL 470 (471)
Q Consensus 461 s~~Dil~~l~ 470 (471)
|++||++++.
T Consensus 275 t~~Dil~~l~ 284 (296)
T 3ddj_A 275 TERDLLIALH 284 (296)
T ss_dssp EHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999999875
No 6
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.96 E-value=3.1e-29 Score=241.17 Aligned_cols=254 Identities=18% Similarity=0.289 Sum_probs=178.3
Q ss_pred EEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhhhcc
Q 012109 158 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR 237 (471)
Q Consensus 158 vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 237 (471)
++++++++|+.+|++.|.+++++++||+|. .++++|++|..|++..+.. .
T Consensus 11 ~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~~~---------------~-------------- 60 (282)
T 2yzq_A 11 PVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPDE---------------E-------------- 60 (282)
T ss_dssp CCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC------------------------------------
T ss_pred CeEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhhcc---------------C--------------
Confidence 788999999999999999999999999986 5799999999998754310 0
Q ss_pred ccCCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHH-HHhhhccccCCCCccc
Q 012109 238 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPIL 316 (471)
Q Consensus 238 ~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~-~l~~~~~~~~~~~~~~ 316 (471)
.++.+|.++++++.+++++.+|++.|.+++++.+||+ +++| +++|++|..|+++ ++.... ...
T Consensus 61 ---~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vv---d~~~---~~~Giit~~di~~~~~~~~~-------~~~ 124 (282)
T 2yzq_A 61 ---QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVV---DSKG---KPVGILTVGDIIRRYFAKSE-------KYK 124 (282)
T ss_dssp ------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHHHHTTTTCS-------GGG
T ss_pred ---CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---EEEEEEEHHHHHHHHHhccC-------Ccc
Confidence 1123677788999999999999999999999999999 3456 8999999999997 554210 011
Q ss_pred ccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHH------HHHhccc
Q 012109 317 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT------ALAKDKA 390 (471)
Q Consensus 317 ~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~------~~~~~~~ 390 (471)
..++ +++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|++ +......
T Consensus 125 ~~~v------------~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~ 192 (282)
T 2yzq_A 125 GVEI------------EPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE 192 (282)
T ss_dssp GCBS------------TTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC------
T ss_pred cCcH------------HHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccch
Confidence 2233 344888899999999999999999999999999999889999999999998 3331000
Q ss_pred --ccc-Ccc-cccCHHHHHh---cCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehH
Q 012109 391 --YAH-INL-SEMTIHQALQ---LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLS 463 (471)
Q Consensus 391 --~~~-l~~-~~~~v~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~ 463 (471)
... ..+ .......... .........++|++++++|.+++++.+|+++|.+++++++||+| ++|+++|+||++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGiit~~ 271 (282)
T 2yzq_A 193 LAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGLIRDF 271 (282)
T ss_dssp --------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEEEEHH
T ss_pred hhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC-CCCCEEEEEeHH
Confidence 000 000 0000000000 00012223457788999999999999999999999999999999 568999999999
Q ss_pred HHHHHhh
Q 012109 464 DIFKFLL 470 (471)
Q Consensus 464 Dil~~l~ 470 (471)
||++++.
T Consensus 272 Dil~~~~ 278 (282)
T 2yzq_A 272 DLLKVLV 278 (282)
T ss_dssp HHGGGGC
T ss_pred HHHHHHH
Confidence 9999875
No 7
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=99.92 E-value=7.1e-25 Score=173.79 Aligned_cols=88 Identities=43% Similarity=0.871 Sum_probs=79.0
Q ss_pred CCCceeeEEEEecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCC
Q 012109 21 PDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGI 100 (471)
Q Consensus 21 ~~~~~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~ 100 (471)
+.++++|++|+|..+|++|+|+|+||+|+ ..+|.+. +|.|+++++|++|.|+|||+|||+|++||.+|++.|+.|+
T Consensus 6 ~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~---~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~ 81 (96)
T 1z0n_A 6 APAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGT 81 (96)
T ss_dssp ----CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSC
T ss_pred CCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC---CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCC
Confidence 45678999999999999999999999999 6899873 4899999999999999999999999999999999999999
Q ss_pred eeeEEEeccCCC
Q 012109 101 VNTVLLATEPNF 112 (471)
Q Consensus 101 ~nn~~~v~~~~~ 112 (471)
.||+|.|.+.+.
T Consensus 82 ~Nnvi~V~~~d~ 93 (96)
T 1z0n_A 82 VNNIIQVKKTDF 93 (96)
T ss_dssp EEEEEEECSCTT
T ss_pred EeEEEEEcCCCc
Confidence 999999987654
No 8
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=99.91 E-value=2.6e-24 Score=199.65 Aligned_cols=90 Identities=24% Similarity=0.610 Sum_probs=81.8
Q ss_pred ceeeEEEEecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCeee
Q 012109 24 VLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNT 103 (471)
Q Consensus 24 ~~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn 103 (471)
.++|++|+|+++|++|+|+|+|++|++.++|.|..+++|.|++++.|++|.|+|||+|||+|++|+.+|++.|+.|+.||
T Consensus 2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN 81 (252)
T 2qlv_B 2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN 81 (252)
T ss_dssp CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence 46899999999999999999999999888999865668999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 012109 104 VLLATEPNFM 113 (471)
Q Consensus 104 ~~~v~~~~~~ 113 (471)
+|.|.+++..
T Consensus 82 vi~V~~~~~~ 91 (252)
T 2qlv_B 82 YIEVRQPEKN 91 (252)
T ss_dssp EEEECC----
T ss_pred eeeccCcccc
Confidence 9999987655
No 9
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.89 E-value=2.5e-22 Score=192.49 Aligned_cols=195 Identities=18% Similarity=0.314 Sum_probs=155.1
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccc-cccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP-ICAI 323 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~-v~~~ 323 (471)
+|+++++++.+++|+.+|+++|.+++++++||++ ++++ +++|++|.+||++++...... .++... ...+
T Consensus 9 i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d--~~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~~ 78 (280)
T 3kh5_A 9 AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVN--AGNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERNF 78 (280)
T ss_dssp SCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEEC--TTTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTCH
T ss_pred hcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEE--CCCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccch
Confidence 6888999999999999999999999999999993 3367 899999999999877432110 000000 0000
Q ss_pred cccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHH
Q 012109 324 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQ 403 (471)
Q Consensus 324 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~ 403 (471)
.......++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+..... ...++.+
T Consensus 79 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~ 152 (280)
T 3kh5_A 79 -LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKID-----ENEVIDD 152 (280)
T ss_dssp -HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSC-----TTCBSGG
T ss_pred -hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCC-----CCCCHHH
Confidence 0011123455588899999999999999999999999999999999999999999999987654322 1124454
Q ss_pred HHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 404 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
+|.+++.++.+++++.+|++.|.+++++++||++ +|+++|+||.+||++++.
T Consensus 153 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~ 204 (280)
T 3kh5_A 153 -------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG 204 (280)
T ss_dssp -------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred -------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence 4467899999999999999999999999999996 699999999999998863
No 10
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.88 E-value=9.6e-23 Score=197.36 Aligned_cols=192 Identities=18% Similarity=0.231 Sum_probs=156.1
Q ss_pred CCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 242 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 242 ~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
++++|.++++++.+++++.+|++.|.+++++++||+ + + +++|++|..||++++...... .....
T Consensus 22 V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~---d--~---~l~GivT~~Di~~~~~~~~~~--------~~~~~ 85 (296)
T 3ddj_A 22 IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA---N--E---KIEGLLTTRDLLSTVESYCKD--------SCSQG 85 (296)
T ss_dssp GGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEE---S--S---SEEEEEEHHHHHGGGTTCC-----------CCHH
T ss_pred HHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEE---C--C---eEEEEEeHHHHHHHhcccccc--------cccch
Confidence 355899999999999999999999999999999999 3 6 899999999999876432110 00000
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCH
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTI 401 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v 401 (471)
.+. ......++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++.+.... ...++
T Consensus 86 ~~~-~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~------~~~~v 158 (296)
T 3ddj_A 86 DLY-HISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD------EIFPV 158 (296)
T ss_dssp HHH-HHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC------CCCBH
T ss_pred hhH-HHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhccc------ccccH
Confidence 000 00011244458889999999999999999999999999999998999999999999998664331 23577
Q ss_pred HHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 402 HQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.++| .+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus 159 ~~~m-------------~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 159 KVFM-------------STKVQTIYKEVRLDQAVKLMLRRGFRRLPVID-DDNKVVGIVTVVNAIKQLA 213 (296)
T ss_dssp HHHS-------------BCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred HHhh-------------cCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence 8776 56899999999999999999999999999999 5899999999999998763
No 11
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=99.86 E-value=3.8e-22 Score=191.75 Aligned_cols=87 Identities=24% Similarity=0.453 Sum_probs=79.8
Q ss_pred CCceeeEEEEecC-CCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCee-eCCCC
Q 012109 22 DTVLIPMRFVWPY-GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFI-SSEYG 99 (471)
Q Consensus 22 ~~~~~~~~f~~~~-~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~-~~~~g 99 (471)
.....|++|+|++ +|++|+|+||||||++.++|.|.+ ++|.|+++++||||+|+|||+|||+|++||++|.+ +|++|
T Consensus 166 ~~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~-~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G 244 (294)
T 3nme_A 166 GLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGK-GTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDG 244 (294)
T ss_dssp CCCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECT-TTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTS
T ss_pred ccccccceeeeccCCCCEEEEEEeccCCCCcccceEcC-CCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCC
Confidence 3456899999999 789999999999999878999853 47999999999999999999999999999999975 89999
Q ss_pred CeeeEEEecc
Q 012109 100 IVNTVLLATE 109 (471)
Q Consensus 100 ~~nn~~~v~~ 109 (471)
+.||+|.|.+
T Consensus 245 ~~nn~~~v~~ 254 (294)
T 3nme_A 245 HTNNYAKVVD 254 (294)
T ss_dssp CCEEEEEECC
T ss_pred CEeEEEEECC
Confidence 9999999986
No 12
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.86 E-value=2.9e-21 Score=189.92 Aligned_cols=207 Identities=16% Similarity=0.258 Sum_probs=160.1
Q ss_pred Cccc--CCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccc
Q 012109 243 GKAF--PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 320 (471)
Q Consensus 243 g~im--~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v 320 (471)
+++| .++++++.+++++.+|++.|.+++++++||++ ++.+ +++|+++.+|++.++...+.... .....+
T Consensus 38 ~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d--~~~~---~~vGivt~~Dll~~l~~~~~~~~----~~~~~l 108 (330)
T 2v8q_E 38 YDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWD--SKKQ---SFVGMLTITDFINILHRYYKSAL----VQIYEL 108 (330)
T ss_dssp GGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEE--TTTT---EEEEEEEHHHHHHHHHHHHHHHT----TTCCCG
T ss_pred hhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEe--CCCC---eEEEEEEHHHHHHHHHHHHhccc----cchhHH
Confidence 4478 78899999999999999999999999999995 3335 89999999999987754321100 000112
Q ss_pred ccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccccc--cCccc
Q 012109 321 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYA--HINLS 397 (471)
Q Consensus 321 ~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~dl~~~~~~~~~~--~l~~~ 397 (471)
....+..+...++++|.++++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|++++....... .-.+.
T Consensus 109 ~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~ 188 (330)
T 2v8q_E 109 EEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFM 188 (330)
T ss_dssp GGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGG
T ss_pred hhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhh
Confidence 2233334444456778899999999999999999999999999999998 89999999999999876542110 00011
Q ss_pred ccCHHHHHhcCCCCCCcccccC-CcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 398 EMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 398 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
..++.++. +|. +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus 189 ~~~v~~~~-----------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~l~Giit~~dl~~~~~ 250 (330)
T 2v8q_E 189 SKSLEELQ-----------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAA 250 (330)
T ss_dssp GSBHHHHT-----------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTSBEEEEEEGGGTGGGGG
T ss_pred cCCHHHhc-----------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEHHHHHHHHh
Confidence 23455442 233 6789999999999999999999999999999 5799999999999998764
No 13
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.84 E-value=4.4e-21 Score=184.07 Aligned_cols=174 Identities=16% Similarity=0.229 Sum_probs=130.9
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccc
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 323 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~ 323 (471)
.+|.++++++.+++++.+|+++|.+++++++||+ +++| +++|+++..|++..+. ..++++
T Consensus 5 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~---d~~~---~~~Giv~~~dl~~~~~-------------~~~v~~- 64 (282)
T 2yzq_A 5 TIMTQNPVTITLPATRNYALELFKKYKVRSFPVV---NKEG---KLVGIISVKRILVNPD-------------EEQLAM- 64 (282)
T ss_dssp HHSEESCCCEESSCC------------CCEEEEE---CTTC---CEEEEEESSCC-----------------------C-
T ss_pred HhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEE---cCCC---cEEEEEEHHHHHhhhc-------------cCCHHH-
Confidence 3688889999999999999999999999999999 3467 8999999999985431 123333
Q ss_pred cccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH-HHhccccccCcccccCHH
Q 012109 324 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIH 402 (471)
Q Consensus 324 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~-~~~~~~~~~l~~~~~~v~ 402 (471)
+|.++++++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|+++ .+..+.. ....++.
T Consensus 65 -----------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~----~~~~~v~ 129 (282)
T 2yzq_A 65 -----------LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEK----YKGVEIE 129 (282)
T ss_dssp -----------CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSG----GGGCBST
T ss_pred -----------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCC----cccCcHH
Confidence 37778899999999999999999999999999998899999999999998 6543210 1123334
Q ss_pred HHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 012109 403 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 466 (471)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil 466 (471)
+ +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+|++
T Consensus 130 ~-------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dl~ 179 (282)
T 2yzq_A 130 P-------------YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD-SEGNLVGIVDETDLL 179 (282)
T ss_dssp T-------------TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC-TTSCEEEEEEGGGGG
T ss_pred H-------------HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHh
Confidence 3 4567899999999999999999999999999999 579999999999998
No 14
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.84 E-value=4.3e-20 Score=180.93 Aligned_cols=185 Identities=18% Similarity=0.191 Sum_probs=149.4
Q ss_pred eEEEEeCCCCHHHHHHHHHHcCCcccccccCCCC----eeeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHH
Q 012109 157 QVVALDIDLPVKQAFHILYEQGISMAPLWDFSKA----RFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGK 232 (471)
Q Consensus 157 ~vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~----~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~ 232 (471)
.++++++++++.+|++.|.+++++.+||+|...+ +++|++|..|++.++...... ..+.
T Consensus 123 ~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~------~~~~----------- 185 (323)
T 3t4n_C 123 DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE------THFL----------- 185 (323)
T ss_dssp -CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG------GGGC-----------
T ss_pred CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc------hhhh-----------
Confidence 3888999999999999999999999999987532 499999999999888543211 0000
Q ss_pred hhhccccCCCCcc---cCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhcccc
Q 012109 233 AYLNRQIDSHGKA---FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC 309 (471)
Q Consensus 233 ~~~~~~~~~~g~i---m~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~ 309 (471)
...++.+ |.++++++.+++++.+|+++|.+++++++||+ +++| +++|++|..|+++++......
T Consensus 186 ------~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVv---d~~~---~~~Giit~~dl~~~~~~~~~~- 252 (323)
T 3t4n_C 186 ------KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII---DENG---YLINVYEAYDVLGLIKGGIYN- 252 (323)
T ss_dssp ------CSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEETTHHHHHHHTTHHH-
T ss_pred ------hCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEE---CCCC---eEEEEEeHHHHHHHHhhchhh-
Confidence 0111224 78899999999999999999999999999999 4567 899999999999887643211
Q ss_pred CCCCcccccccccccccccccccCCCCCC------CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHH
Q 012109 310 SSSLPILKLPICAIPVGTWVPKIGEPNRR------PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 383 (471)
Q Consensus 310 ~~~~~~~~~~v~~~~i~~~~~~v~~~m~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~ 383 (471)
.+..++.++ |.+ +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++
T Consensus 253 -----~~~~~v~~~------------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil 315 (323)
T 3t4n_C 253 -----DLSLSVGEA------------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315 (323)
T ss_dssp -----HTTSBHHHH------------GGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHH
T ss_pred -----hccCCHHHH------------HhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHH
Confidence 123345444 554 789999999999999999999999999999899999999999999
Q ss_pred HHHhc
Q 012109 384 ALAKD 388 (471)
Q Consensus 384 ~~~~~ 388 (471)
+++..
T Consensus 316 ~~l~~ 320 (323)
T 3t4n_C 316 KYILL 320 (323)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 97654
No 15
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.81 E-value=8.9e-20 Score=179.54 Aligned_cols=209 Identities=12% Similarity=0.165 Sum_probs=151.7
Q ss_pred CcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccc
Q 012109 243 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 320 (471)
Q Consensus 243 g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v 320 (471)
+.+|.+ +++++++++|+.+|++.|.+++++++||++ ++.+ +++|+++.+|++.++......... ...+ ..+
T Consensus 25 ~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d--~~~~---~~vGiv~~~Dl~~~~~~~~~~~~~-~~~~-~~~ 97 (334)
T 2qrd_G 25 YDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD--SEAN---KFAGLLTMADFVNVIKYYYQSSSF-PEAI-AEI 97 (334)
T ss_dssp GGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEE--TTTT---EEEEEECHHHHHHHHHHHHHHCSC-GGGG-GGG
T ss_pred hhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEe--CCCC---eEEEEEEHHHHHHHHHHHhhccCC-ccHH-HHH
Confidence 446754 578999999999999999999999999994 3346 899999999999876532210000 0000 011
Q ss_pred ccccccccccccCCCCCCCc--eEecCCCcHHHHHHHHHhcCCCEEEEEcCCC-c----EEEEEeHHHHHHHHhcccccc
Q 012109 321 CAIPVGTWVPKIGEPNRRPL--AMLRPSASLSAALNLLVQAQVSSIPIVDDND-S----LLDIYCRSDITALAKDKAYAH 393 (471)
Q Consensus 321 ~~~~i~~~~~~v~~~m~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~----lvGivt~~dl~~~~~~~~~~~ 393 (471)
....+..+....+++|.+++ +++.+++++.++++.|.+++++++||+|++| + ++|++|.+|+++.+..... .
T Consensus 98 ~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~-~ 176 (334)
T 2qrd_G 98 DKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK-E 176 (334)
T ss_dssp GSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG-G
T ss_pred hhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc-c
Confidence 11111111111122355556 8999999999999999999999999999765 4 9999999999987654211 1
Q ss_pred CcccccCHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 394 INLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 394 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
..+...++.++. .+|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus 177 ~~~~~~~v~~l~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd-~~~~~~Giit~~dl~~~~~ 242 (334)
T 2qrd_G 177 TAMLRVPLNQMT----------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQ 242 (334)
T ss_dssp GGGCCCBGGGSS----------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETHHHHHHHT
T ss_pred hhhhhCcHHHhC----------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEc-CCCcEEEEEEHHHHHHHhh
Confidence 111223444421 03567899999999999999999999999999999 5799999999999998764
No 16
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.80 E-value=9.1e-20 Score=161.66 Aligned_cols=134 Identities=19% Similarity=0.316 Sum_probs=102.1
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccC---cccccCH---HHHHhc
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI---NLSEMTI---HQALQL 407 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l---~~~~~~v---~~~~~~ 407 (471)
++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.......... ....... ......
T Consensus 22 diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (170)
T 4esy_A 22 DILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFET 101 (170)
T ss_dssp GGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhhhcc
Confidence 3489999999999999999999999999999999999999999999999864322110000 0000000 000000
Q ss_pred CCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 408 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 408 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.......++|++++++|.+++++.+|+++|.+++++++||+| +|+++|+||++||+++|+
T Consensus 102 -~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~ 161 (170)
T 4esy_A 102 -GRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLL 161 (170)
T ss_dssp -HTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSC
T ss_pred -ccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence 001112346688999999999999999999999999999999 499999999999999886
No 17
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.76 E-value=4.8e-18 Score=143.44 Aligned_cols=119 Identities=16% Similarity=0.307 Sum_probs=103.8
Q ss_pred cCCCCC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 332 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 332 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
++++|. ..++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+|+++....+. ...++.++|
T Consensus 8 v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------~~~~v~~~m--- 78 (130)
T 3i8n_A 8 VTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------GQKQLGAVM--- 78 (130)
T ss_dssp CTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT------TTSBHHHHS---
T ss_pred HhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC------CcCCHHHHh---
Confidence 445577 456789999999999999999999999999987 89999999999998765432 135788776
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||+.||+++++|
T Consensus 79 -----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 79 -----------RPIQVVLNNTALPKVFDQMMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp -----------EECCEEETTSCHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred -----------cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHcC
Confidence 2578999999999999999999999999999 58999999999999999975
No 18
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.75 E-value=2.5e-18 Score=150.04 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=97.3
Q ss_pred CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 338 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 338 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
.+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++++..........+...++.+ +
T Consensus 25 ~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~-------------i 91 (156)
T 3k6e_A 25 KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH-------------M 91 (156)
T ss_dssp TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG-------------T
T ss_pred hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHH-------------h
Confidence 478999999999999999999999999999989999999999999987654322111122334444 5
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
|.+++.++++++++.+|+++|.++++ +|||| ++|+++|+||++||++++.
T Consensus 92 m~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd-~~g~l~GiiT~~Dil~~~~ 141 (156)
T 3k6e_A 92 TKTDVAVVSPDFTITEVLHKLVDESF--LPVVD-AEGIFQGIITRKSILKAVN 141 (156)
T ss_dssp CBCSCCCBCTTCCHHHHHHHTTTSSE--EEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred hcCCceecccccHHHHHHHHHHHcCC--eEEEe-cCCEEEEEEEHHHHHHHHH
Confidence 57799999999999999999998764 99999 6899999999999999874
No 19
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.75 E-value=2.5e-18 Score=144.54 Aligned_cols=117 Identities=15% Similarity=0.396 Sum_probs=100.5
Q ss_pred CCCCCC--ceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 334 EPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 334 ~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
++|.+. ++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.+.... ...++.++|
T Consensus 7 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~------~~~~v~~~m----- 75 (127)
T 3nqr_A 7 DIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDKVL----- 75 (127)
T ss_dssp HHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC------CCCCHHHHC-----
T ss_pred HhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC------CCCCHHHHc-----
Confidence 347744 8899999999999999999999999999987 89999999999998654321 246788776
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
. ++.++.+++++.+|++.|.+++++++||+| ++|+++|+||++||+++++|
T Consensus 76 --------~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 76 --------R-TAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp --------B-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC-TTSCEEEEEEHHHHHHHC--
T ss_pred --------C-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence 2 377899999999999999999999999999 58999999999999999875
No 20
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.74 E-value=7.9e-18 Score=145.41 Aligned_cols=117 Identities=18% Similarity=0.287 Sum_probs=102.7
Q ss_pred CCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCC
Q 012109 333 GEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 409 (471)
Q Consensus 333 ~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~ 409 (471)
+++|.+ +++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+|+++...... ..++.++
T Consensus 26 ~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~~----- 93 (148)
T 3lv9_A 26 REIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEEI----- 93 (148)
T ss_dssp GGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGGT-----
T ss_pred HHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHHh-----
Confidence 344877 89999999999999999999999999999987 89999999999998765431 2455554
Q ss_pred CCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 410 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||+.||+++++|
T Consensus 94 --------m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 94 --------L-RDIIYISENLTIDKALERIRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp --------C-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHH
T ss_pred --------c-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence 4 5789999999999999999999999999999 57999999999999999864
No 21
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.74 E-value=6.8e-18 Score=142.59 Aligned_cols=119 Identities=12% Similarity=0.192 Sum_probs=101.6
Q ss_pred CCCC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 334 EPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 334 ~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
++|. .+++++.+++++.+|+++|.+++++++||+++ +|+++|+||.+|+++....+.. +...++.++|
T Consensus 6 ~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~~m----- 76 (130)
T 3hf7_A 6 DIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLRAA----- 76 (130)
T ss_dssp HHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHHHS-----
T ss_pred HhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHHhc-----
Confidence 3464 36889999999999999999999999999975 5899999999999998755321 1224566654
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||++||+++++|
T Consensus 77 ---------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 77 ---------DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp ---------BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC-TTSCEEEEEEHHHHHHHHHC
T ss_pred ---------cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc-CCCCEEEEeeHHHHHHHHhC
Confidence 3688999999999999999999999999999 58999999999999999875
No 22
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.74 E-value=7.2e-18 Score=140.42 Aligned_cols=116 Identities=20% Similarity=0.354 Sum_probs=103.1
Q ss_pred CCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCC
Q 012109 333 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 333 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
+++|.++++++.+++++.+|++.|.+++.+++||+|++|+++|+|+.+|+++.+..+ ..++.+++
T Consensus 4 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~--------~~~v~~~~------- 68 (122)
T 3kpb_A 4 KDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN--------KKTIEEIM------- 68 (122)
T ss_dssp HHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT--------CCBGGGTS-------
T ss_pred HHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc--------ccCHHHHh-------
Confidence 344888999999999999999999999999999999999999999999999876543 12555544
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus 69 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Givt~~dl~~~l~ 119 (122)
T 3kpb_A 69 ------TRNVITAHEDEPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLFG 119 (122)
T ss_dssp ------BSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHC
T ss_pred ------cCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC-CCCCEEEEEeHHHHHHHhh
Confidence 66889999999999999999999999999999 5799999999999999875
No 23
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.73 E-value=4.6e-18 Score=143.40 Aligned_cols=115 Identities=14% Similarity=0.326 Sum_probs=99.0
Q ss_pred CCCC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 334 EPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 334 ~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
++|. .+++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+|+++..... ..++.++|
T Consensus 9 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~~m----- 75 (129)
T 3jtf_A 9 DIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRSLV----- 75 (129)
T ss_dssp HHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGGGC-----
T ss_pred HhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHHHh-----
Confidence 3376 567899999999999999999999999999985 8999999999998865421 24566554
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
. ++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||++||+++++|
T Consensus 76 --------~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 76 --------R-PAVFIPEVKRLNVLLREFRASRNHLAIVID-EHGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp --------B-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC-C-CCEEEEEEHHHHHHHHHH
T ss_pred --------C-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence 2 488999999999999999999999999999 57999999999999999874
No 24
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.73 E-value=2.4e-17 Score=146.25 Aligned_cols=118 Identities=19% Similarity=0.336 Sum_probs=103.7
Q ss_pred cCCCCC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 332 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 332 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
++++|. .+++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+|+++....+. ..++.++
T Consensus 44 v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~i---- 112 (172)
T 3lhh_A 44 ISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVDL---- 112 (172)
T ss_dssp TTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGGG----
T ss_pred HHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHHH----
Confidence 455587 678999999999999999999999999999987 99999999999998765431 2455654
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
| ++++++.+++++.+|++.|.+++++++||+| ++|+++|+||+.||++++++
T Consensus 113 ---------m-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 113 ---------V-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp ---------C-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred ---------h-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence 4 5789999999999999999999999999999 57999999999999999874
No 25
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.73 E-value=3.7e-17 Score=136.62 Aligned_cols=117 Identities=19% Similarity=0.272 Sum_probs=103.3
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~ 413 (471)
++|.++++++.+++++.+|++.|.+++.+++||+| +|+++|+|+.+|+++....+.. ....++.+++
T Consensus 5 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~----~~~~~v~~~m-------- 71 (125)
T 1pbj_A 5 DVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWEVM-------- 71 (125)
T ss_dssp HHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHHHC--------
T ss_pred HhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCc----ccccCHHHHc--------
Confidence 44788899999999999999999999999999999 8999999999999987654321 2246778766
Q ss_pred cccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 414 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 414 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++.+++++.+|++.|.+++++++||+| + |+++|+||.+||++++.
T Consensus 72 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~ 121 (125)
T 1pbj_A 72 -----ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKM 121 (125)
T ss_dssp -----BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC
T ss_pred -----CCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 55899999999999999999999999999999 5 99999999999999875
No 26
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.71 E-value=1.1e-16 Score=137.07 Aligned_cols=124 Identities=27% Similarity=0.517 Sum_probs=101.7
Q ss_pred CCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcc
Q 012109 336 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 415 (471)
Q Consensus 336 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~ 415 (471)
|.++++++.+++++.+|++.|.+++++++||+|++|+++|+|+.+|+++....+.+. ....++.++|.....
T Consensus 17 ~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~~m~~~~~----- 88 (144)
T 2nyc_A 17 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN---DLSLSVGEALMRRSD----- 88 (144)
T ss_dssp BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC------
T ss_pred CCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccc---cCCccHHHHHhcCcc-----
Confidence 667889999999999999999999999999999889999999999999876543211 224688888743100
Q ss_pred cccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 416 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 416 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
. ..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++++.
T Consensus 89 ~--~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~ 140 (144)
T 2nyc_A 89 D--FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 140 (144)
T ss_dssp -------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred c--cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEHHHHHHHHH
Confidence 0 02588999999999999999999999999999 5799999999999999875
No 27
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.71 E-value=8.5e-18 Score=143.14 Aligned_cols=118 Identities=14% Similarity=0.281 Sum_probs=99.4
Q ss_pred CCCC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 334 EPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 334 ~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
++|. ++++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+|+++.+.... ....++.++|
T Consensus 7 ~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-----~~~~~v~~~m----- 76 (136)
T 3lfr_A 7 DIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-----GDSDDVKKLL----- 76 (136)
T ss_dssp HHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-----GGGCCGGGTC-----
T ss_pred hccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-----CCCcCHHHHc-----
Confidence 3366 568899999999999999999999999999987 79999999999998754221 1134566544
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
. ++.++.+++++.+|+++|.+++++++||+| ++|+++|+||++||++++++
T Consensus 77 --------~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 77 --------R-PATFVPESKRLNVLLREFRANHNHMAIVID-EYGGVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp --------B-CCCEEETTCBHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHTTC--
T ss_pred --------C-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence 3 488999999999999999999999999999 58999999999999998864
No 28
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.71 E-value=1.8e-17 Score=139.38 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=102.3
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCC
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 411 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 411 (471)
++++|.+++.++.+++++.+|++.|.+++++++||+|+ |+++|+||.+|+++....+.. ...++.++
T Consensus 7 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~-----~~~~v~~~------- 73 (128)
T 3gby_A 7 FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPT-----VKEKLGEE------- 73 (128)
T ss_dssp GGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCC-----TTCBCCGG-------
T ss_pred HHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCc-----ccCcHHHH-------
Confidence 34458889999999999999999999999999999998 999999999999986543211 01344554
Q ss_pred CCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 412 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 412 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus 74 ------m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 74 ------LLETVRSYRPGEQLFDNLISVAAAKCSVVPLAD-EDGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp ------GCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred ------ccCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC-CCCCEEEEEEHHHHHHHHH
Confidence 466899999999999999999999999999999 5899999999999999875
No 29
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.71 E-value=5.4e-17 Score=138.88 Aligned_cols=120 Identities=14% Similarity=0.206 Sum_probs=102.7
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCC--cEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND--SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
.++++|.++++++.+++++.+|+++|.+++++++||+|++| +++|+||.+|+++.+..+.. .+.++.++
T Consensus 6 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~~---- 76 (141)
T 2rih_A 6 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-----LDGPAMPI---- 76 (141)
T ss_dssp BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-----TTSBSGGG----
T ss_pred EHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCC-----CCCCHHHH----
Confidence 34555888999999999999999999999999999999888 99999999999987654311 12455554
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
|.+++.++.++ ++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus 77 ---------m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 77 ---------ANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA 127 (141)
T ss_dssp ---------CBCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred ---------cCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc-CCCcEEEEEEHHHHHHHHH
Confidence 46689999999 999999999999999999999 5799999999999987653
No 30
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.71 E-value=6.2e-17 Score=139.94 Aligned_cols=118 Identities=13% Similarity=0.287 Sum_probs=103.1
Q ss_pred cCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCC
Q 012109 332 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 409 (471)
Q Consensus 332 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~ 409 (471)
++++|.+ +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+..+.. +...++.++|
T Consensus 30 v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~~m---- 101 (149)
T 3k2v_A 30 VNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD----MRDASIADVM---- 101 (149)
T ss_dssp GGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC----CTTCBHHHHS----
T ss_pred HHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC----cccCcHHHHc----
Confidence 4455888 89999999999999999999999999999989999999999999987754321 2356788876
Q ss_pred CCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 410 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.+++.++.+++++.+|++.|.+++++++||+| + ++++|+||..||+++
T Consensus 102 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~~Giit~~dil~a 149 (149)
T 3k2v_A 102 ---------TRGGIRIRPGTLAVDALNLMQSRHITCVLVAD-G-DHLLGVVHMHDLLRA 149 (149)
T ss_dssp ---------EESCCEECTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHTCC
T ss_pred ---------CCCCeEECCCCCHHHHHHHHHHcCCCEEEEec-C-CEEEEEEEHHHhhcC
Confidence 45789999999999999999999999999999 3 499999999999853
No 31
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.71 E-value=7e-17 Score=141.27 Aligned_cols=118 Identities=16% Similarity=0.323 Sum_probs=101.0
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~ 413 (471)
++|.+ ++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++....... ....++.++|
T Consensus 21 ~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~~m-------- 87 (159)
T 3fv6_A 21 DFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE----LTSVPVHIIM-------- 87 (159)
T ss_dssp GSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC----TTTCBGGGTS--------
T ss_pred HHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCc----ccCcCHHHHH--------
Confidence 33776 4599999999999999999999999999989999999999999987633211 2245667655
Q ss_pred cccccCC--cceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCC---eEEEEEehHHHHHHhh
Q 012109 414 PYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK---RVEGIVSLSDIFKFLL 470 (471)
Q Consensus 414 ~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~---~liGiIs~~Dil~~l~ 470 (471)
.+ ++.++.+++++.+|++.|.+++++++||+| ++| +++|+||..||++++.
T Consensus 88 -----~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~~~vGiit~~dil~~l~ 143 (159)
T 3fv6_A 88 -----TRMPNITVCRREDYVMDIAKHLIEKQIDALPVIK-DTDKGFEVIGRVTKTNMTKILV 143 (159)
T ss_dssp -----EETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-ECSSSEEEEEEEEHHHHHHHHH
T ss_pred -----cCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCcceeEEEEEEHHHHHHHHH
Confidence 44 789999999999999999999999999999 467 9999999999999875
No 32
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.70 E-value=2.9e-17 Score=138.96 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=102.5
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH-HHhccccccCcccccCHHHHHhcCCCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~-~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
++|.++++++.+++++.+|+++|.+++.+++||+|++|+++|+||.+|+++ ++..+.. ....++.++|
T Consensus 12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~~m------- 80 (133)
T 1y5h_A 12 DIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD----PNTATAGELA------- 80 (133)
T ss_dssp HHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC----TTTSBHHHHH-------
T ss_pred HHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCC----ccccCHHHHh-------
Confidence 337778899999999999999999999999999988899999999999984 5443211 2246788877
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++.+++++.+|++.|.+++.+++||+| + |+++|+||.+||++++.
T Consensus 81 ------~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~-g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 81 ------RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHLP 130 (133)
T ss_dssp ------TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTCC
T ss_pred ------cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 45789999999999999999999999999999 4 99999999999999875
No 33
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.70 E-value=1.4e-16 Score=135.53 Aligned_cols=119 Identities=19% Similarity=0.388 Sum_probs=103.1
Q ss_pred CCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHH-HHHHhccccccCcccccCHHHHHhcCCCC
Q 012109 333 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHINLSEMTIHQALQLGQDS 411 (471)
Q Consensus 333 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl-~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 411 (471)
+++|.++++++.+++++.+|+++|.+++.+++||+|++|+++|+|+.+|+ ++.+.... ....++.++|
T Consensus 11 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~~m------ 79 (138)
T 2p9m_A 11 KDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY-----TLETTIGDVM------ 79 (138)
T ss_dssp GGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCC-----CSSCBHHHHS------
T ss_pred HHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcc-----cCCcCHHHHh------
Confidence 34488889999999999999999999999999999988999999999999 87654322 1245778766
Q ss_pred CCcccccCCcceEeCCCCCHHHHHHHHHcCC-----CCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 412 YSPYELRSQRCQMCLPSDTLHKVMERLANPG-----VRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 412 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~-----~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++.+++++.+|++.|.+++ ++++||+| ++|+++|+||..||++++.
T Consensus 80 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~ 135 (138)
T 2p9m_A 80 -------TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTIS 135 (138)
T ss_dssp -------CSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred -------CCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence 557899999999999999999999 99999999 5799999999999999874
No 34
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.70 E-value=1.3e-16 Score=139.81 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=103.4
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc----CcccccCHHHHHhc
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH----INLSEMTIHQALQL 407 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~----l~~~~~~v~~~~~~ 407 (471)
++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++......... ......++.++|
T Consensus 7 v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im-- 84 (160)
T 2o16_A 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVM-- 84 (160)
T ss_dssp GGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHS--
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHHh--
Confidence 44558888999999999999999999999999999998899999999999998764321100 001235666655
Q ss_pred CCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 408 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 408 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++.+++++.+|++.|.+++++++||+| + |+++|+||..||++++.
T Consensus 85 -----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~ 134 (160)
T 2o16_A 85 -----------HTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAI 134 (160)
T ss_dssp -----------CSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHH
T ss_pred -----------cCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 66899999999999999999999999999999 4 99999999999999864
No 35
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.70 E-value=2.7e-17 Score=142.90 Aligned_cols=114 Identities=18% Similarity=0.305 Sum_probs=100.1
Q ss_pred CCC--CceEecCCCcHHHHHHHHHhcCCCEEEEE-cC-CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCC
Q 012109 336 NRR--PLAMLRPSASLSAALNLLVQAQVSSIPIV-DD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 411 (471)
Q Consensus 336 m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~-~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 411 (471)
|.+ +++++.+++++.+|+++|.+++++++||+ ++ +|+++|+||.+|+++...... ..++.++
T Consensus 26 M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~~------- 91 (153)
T 3oco_A 26 MVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKISTI------- 91 (153)
T ss_dssp SEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGGT-------
T ss_pred ecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHHH-------
Confidence 765 78999999999999999999999999999 65 489999999999998765431 2455554
Q ss_pred CCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 412 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 412 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||+.||++++++
T Consensus 92 ------m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 92 ------M-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp ------C-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred ------h-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence 4 5799999999999999999999999999999 57999999999999999874
No 36
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.70 E-value=1.6e-16 Score=135.34 Aligned_cols=119 Identities=18% Similarity=0.356 Sum_probs=101.6
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH-HHhccccccCcccccCHHHHHhcCCC
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~-~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++ +...+. ....++.++
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~~------ 77 (138)
T 2yzi_A 9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-----PYDIPVERI------ 77 (138)
T ss_dssp GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-----CTTSBGGGT------
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-----cccCCHHHH------
Confidence 34448889999999999999999999999999999998899999999999974 433221 113455554
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
|.+++.++.+++++.+|++.|.+++++++ |+| ++|+++|+||..||++++.
T Consensus 78 -------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd-~~g~~~Giit~~dil~~~~ 128 (138)
T 2yzi_A 78 -------MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE-EEGKIVGIFTLSDLLEASR 128 (138)
T ss_dssp -------CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE-ETTEEEEEEEHHHHHHHHH
T ss_pred -------hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC-CCCCEEEEEEHHHHHHHHH
Confidence 46689999999999999999999999999 999 5799999999999999875
No 37
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.70 E-value=1.3e-16 Score=141.60 Aligned_cols=116 Identities=15% Similarity=0.181 Sum_probs=100.1
Q ss_pred CCCCC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCC
Q 012109 333 GEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 409 (471)
Q Consensus 333 ~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~ 409 (471)
+++|. ++++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+||++...... ..++. +
T Consensus 39 ~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~--~---- 105 (173)
T 3ocm_A 39 RSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN--R---- 105 (173)
T ss_dssp TTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG--G----
T ss_pred HHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH--h----
Confidence 34475 468899999999999999999999999999876 89999999999998764321 23444 3
Q ss_pred CCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 410 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
.++++++.+++++.+|+++|.+++++.+||+| ++|+++|+||+.||++++++
T Consensus 106 ---------~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 106 ---------LRDPIIVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp ---------SBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred ---------cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence 34789999999999999999999999999999 58999999999999999874
No 38
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.70 E-value=6.2e-17 Score=139.96 Aligned_cols=125 Identities=19% Similarity=0.359 Sum_probs=101.2
Q ss_pred cCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc---------cCcccccC
Q 012109 332 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA---------HINLSEMT 400 (471)
Q Consensus 332 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~---------~l~~~~~~ 400 (471)
++++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|++.+....... .......+
T Consensus 7 v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (152)
T 4gqw_A 7 VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKL 86 (152)
T ss_dssp GGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CCB
T ss_pred hhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhcccc
Confidence 3445777 799999999999999999999999999999889999999999998643211000 00011345
Q ss_pred HHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 401 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 401 v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
+.++| .++++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++.
T Consensus 87 v~~~m-------------~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~ 142 (152)
T 4gqw_A 87 VGDLM-------------TPAPLVVEEKTNLEDAAKILLETKYRRLPVVD-SDGKLVGIITRGNVVRAAL 142 (152)
T ss_dssp HHHHS-------------EESCCCEESSSBHHHHHHHHHHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred HHHhc-------------CCCceEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHH
Confidence 66655 55788999999999999999999999999999 5899999999999999886
No 39
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.69 E-value=1.2e-16 Score=135.23 Aligned_cols=119 Identities=15% Similarity=0.244 Sum_probs=102.8
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCC
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 411 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 411 (471)
++++|.++++++.+++++.+|++.|.+++.+++||+| +|+++|+||.+|+++....+.. ...++.+++
T Consensus 6 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~~~------ 73 (133)
T 2ef7_A 6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS-----LETKAEEFM------ 73 (133)
T ss_dssp GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC-----TTCBGGGTS------
T ss_pred HHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCC-----cccCHHHHc------
Confidence 3455888899999999999999999999999999999 8999999999999987654321 124556544
Q ss_pred CCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 412 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 412 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus 74 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~ 124 (133)
T 2ef7_A 74 -------TASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAID 124 (133)
T ss_dssp -------EECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred -------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence 56789999999999999999999999999999 5799999999999998874
No 40
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.69 E-value=2.3e-16 Score=136.79 Aligned_cols=122 Identities=35% Similarity=0.596 Sum_probs=102.5
Q ss_pred CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 338 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 338 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++......+. ....++.++|... .+
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~~---~~~~~v~~~m~~~-------~~ 98 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYN---NLDVSVTKALQHR-------SH 98 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSCC---CTTSBGGGGGGTC-------CH
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhhh---hhcchHHHHHhhh-------hc
Confidence 4688899999999999999999999999999889999999999999876543221 1235677766321 12
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus 99 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 99 YFEGVLKCYLHETLETIINRLVEAEVHRLVVVD-ENDVVKGIVSLSDILQALV 150 (152)
T ss_dssp HHHTCSEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHC
T ss_pred ccCCCeEECCCCcHHHHHHHHHHcCCeEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence 235789999999999999999999999999999 5799999999999999885
No 41
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.68 E-value=6.3e-17 Score=140.97 Aligned_cols=119 Identities=20% Similarity=0.304 Sum_probs=98.5
Q ss_pred CC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCC
Q 012109 336 NR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 336 m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~ 413 (471)
|. .+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++...........+...++.+
T Consensus 21 m~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~v~~---------- 90 (156)
T 3ctu_A 21 LTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH---------- 90 (156)
T ss_dssp EEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG----------
T ss_pred cCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccccccccccCcHHH----------
Confidence 66 578999999999999999999999999999989999999999999987654322110111244555
Q ss_pred cccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 414 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 414 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
+|.+++.++.+++++.+|++.|.+++ ++||+| ++|+++|+||.+||++++.
T Consensus 91 ---~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd-~~g~~~Giit~~dil~~l~ 141 (156)
T 3ctu_A 91 ---MTKTDVAVVSPDFTITEVLHKLVDES--FLPVVD-AEGIFQGIITRKSILKAVN 141 (156)
T ss_dssp ---GCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEEC-TTSBEEEEEETTHHHHHHH
T ss_pred ---hccCCceeeCCCCcHHHHHHHHHHcC--eEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence 44668999999999999999999986 799999 5899999999999999874
No 42
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.68 E-value=4.1e-16 Score=136.03 Aligned_cols=123 Identities=8% Similarity=0.131 Sum_probs=102.2
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhcCCCE-EEEEcCCCcEEEEEeHHHHHHHHhcc---ccc--------cCccccc
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSS-IPIVDDNDSLLDIYCRSDITALAKDK---AYA--------HINLSEM 399 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~-lpVvd~~g~lvGivt~~dl~~~~~~~---~~~--------~l~~~~~ 399 (471)
++++|.++++++.+++++.+|+++|.++++++ +||+|++ +++|+||.+|+++..... ... .......
T Consensus 18 v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (157)
T 1o50_A 18 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAK 96 (157)
T ss_dssp HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSSC
T ss_pred HhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcCC
Confidence 45558889999999999999999999999999 9999977 999999999999865311 000 0011234
Q ss_pred CHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 400 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 400 ~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
++.++| .+ ++++.+++++.+|+++|.+++++++||+| ++|+++|+||..||++++.
T Consensus 97 ~v~~im-------------~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 97 NASEIM-------------LD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALW 152 (157)
T ss_dssp BHHHHC-------------BC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred cHHHHc-------------CC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence 555544 67 89999999999999999999999999999 5799999999999999875
No 43
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=137.25 Aligned_cols=128 Identities=15% Similarity=0.220 Sum_probs=102.5
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcC--CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 411 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 411 (471)
++|.++++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++...............++.++|.....
T Consensus 17 dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~~~- 95 (164)
T 2pfi_A 17 HFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCP- 95 (164)
T ss_dssp HHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTTCC-
T ss_pred HHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhccccc-
Confidence 338888999999999999999999999999999996 78999999999999876543211111123578888754210
Q ss_pred CCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 412 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 412 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
....+.++.+++++.+|++.|.+++++++||+| +|+++|+||..||++++.
T Consensus 96 ------~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~ 146 (164)
T 2pfi_A 96 ------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAIS 146 (164)
T ss_dssp ------CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred ------ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence 011278999999999999999999999999999 499999999999999874
No 44
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.68 E-value=2.2e-16 Score=138.92 Aligned_cols=117 Identities=20% Similarity=0.365 Sum_probs=101.3
Q ss_pred CCC---CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCC
Q 012109 336 NRR---PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 336 m~~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
|.+ +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+...... ....++.++|
T Consensus 30 m~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~~m------- 99 (165)
T 3fhm_A 30 LDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAA---SLQQSVSVAM------- 99 (165)
T ss_dssp HHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGG---GGTSBGGGTS-------
T ss_pred hccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCc---cccCCHHHHh-------
Confidence 663 689999999999999999999999999999999999999999999876543210 1235566654
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.++++++.+++++.+|+++|.+++++++||+| + |+++|+||..||++++.
T Consensus 100 ------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~ 149 (165)
T 3fhm_A 100 ------TKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARI 149 (165)
T ss_dssp ------BSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTT
T ss_pred ------cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 66899999999999999999999999999999 5 99999999999999875
No 45
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.68 E-value=9.7e-16 Score=143.90 Aligned_cols=200 Identities=11% Similarity=0.103 Sum_probs=131.3
Q ss_pred CCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccC---CCCc----
Q 012109 242 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCS---SSLP---- 314 (471)
Q Consensus 242 ~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~---~~~~---- 314 (471)
++.+|.++++++.+++++.+|+++|.+++++++||+ +++| +++|++|..|+++++........ ....
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVv---d~~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v 82 (245)
T 3l2b_A 9 VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVA---DGNN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNI 82 (245)
T ss_dssp GGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEE---CTTC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred HHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence 345899999999999999999999999999999999 4567 89999999999988754321100 0000
Q ss_pred -------cc------cccccccccccc-ccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC----------
Q 012109 315 -------IL------KLPICAIPVGTW-VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---------- 370 (471)
Q Consensus 315 -------~~------~~~v~~~~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------- 370 (471)
.+ ....+.+.++.. ...+.+.+....+.+-.+ -.++...+.+.+++++++++..
T Consensus 83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a 160 (245)
T 3l2b_A 83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELA 160 (245)
T ss_dssp HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 00 000000100000 011112233333333333 4688888899999999888532
Q ss_pred --CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccccC-CcceEeCCCCCHHHHHHHHHcCCCCEEE
Q 012109 371 --DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLV 447 (471)
Q Consensus 371 --g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~ 447 (471)
+.+..+.+..|......... ...++.++| + +++.++++++++.+|+++|.+++++++|
T Consensus 161 ~~~~~~~i~t~~d~~~~~~~~~------~~~~v~~im-------------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~p 221 (245)
T 3l2b_A 161 KKNNITVITTPHDSFTASRLIV------QSLPVDYVM-------------TKDNLVAVSTDDLVEDVKVTMSETRYSNYP 221 (245)
T ss_dssp HHHTCEEEECSSCHHHHHHHGG------GGSBHHHHS-------------BCTTCCCEETTSBHHHHHHHHHHHCCSEEE
T ss_pred HHcCCeEEEeCCChHHHHHHHh------cCCceeeEe-------------cCCccEEECCCCcHHHHHHHHHhcCCceEE
Confidence 22345566666554332211 134667665 5 6899999999999999999999999999
Q ss_pred EEeCCCCeEEEEEehHHHHHHh
Q 012109 448 IVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 448 Vvd~~~~~liGiIs~~Dil~~l 469 (471)
|+| ++|+++|+||++|++++.
T Consensus 222 Vvd-~~~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 222 VID-ENNKVVGSIARFHLISTH 242 (245)
T ss_dssp EEC-TTCBEEEEEECC------
T ss_pred EEc-CCCeEEEEEEHHHhhchh
Confidence 999 579999999999999864
No 46
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.68 E-value=2.7e-16 Score=144.48 Aligned_cols=157 Identities=12% Similarity=0.147 Sum_probs=101.4
Q ss_pred CCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 242 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 242 ~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
++.+|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|+++.+|+++.+. ..++.
T Consensus 15 ~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVv---d~~~---~l~Givt~~dl~~~~~-------------~~~v~ 75 (213)
T 1vr9_A 15 VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVK---DREG---HFRGVVNKEDLLDLDL-------------DSSVF 75 (213)
T ss_dssp GGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEE---CTTS---BEEEEEEGGGGTTSCT-------------TSBSG
T ss_pred HHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEE---cCCC---EEEEEEEHHHHHhhcC-------------CCcHH
Confidence 355799999999999999999999999999999999 3457 8999999999874321 23344
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCH
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTI 401 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v 401 (471)
++ |.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++...... .+
T Consensus 76 ~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~~ 134 (213)
T 1vr9_A 76 NK------------VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------AM 134 (213)
T ss_dssp GG------------CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C-
T ss_pred HH------------ccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------cC
Confidence 44 8888999999999999999999999999999998899999999999998765321 11
Q ss_pred HHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEe
Q 012109 402 HQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE 450 (471)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd 450 (471)
.+.+... .+.+.....++.+|.+.|.+++++.++|++
T Consensus 135 ~~~~~~l------------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~ 171 (213)
T 1vr9_A 135 DVPGIRF------------SVLLEDKPGELRKVVDALALSNINILSVIT 171 (213)
T ss_dssp -------------------------------------------------
T ss_pred CCCcEEE------------EEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence 2211100 011113334599999999999999999986
No 47
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.67 E-value=4.5e-16 Score=142.01 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=128.6
Q ss_pred eeeecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHhC--
Q 012109 192 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-- 269 (471)
Q Consensus 192 ~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~-- 269 (471)
++.-++..|.++++..+. .......+..+.-.........+.|.+..+|.+|.++++++.++.|+.+|++.|.++
T Consensus 9 ~~~~m~~dd~~dll~~l~---~~~~~~~l~~l~~~e~~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~ 85 (205)
T 3kxr_A 9 LFAQLSPEDLIEWSDYLP---ESFTDRALAQMGERQRQRFELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIEL 85 (205)
T ss_dssp SGGGSCHHHHHHTTTTSC---HHHHHHHHHHSCHHHHHHHHHHHHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHhCC---HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCc
Confidence 334456677777764321 111223333334445556666777889999999999999999999999999999997
Q ss_pred -CccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccccccCCCCCCCceEecCCCc
Q 012109 270 -EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 348 (471)
Q Consensus 270 -~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~ 348 (471)
+++.+||+ ++++ +++|+++.+|++.. ....+++++ |.++++++.++++
T Consensus 86 ~~~~~~~Vv---d~~~---~lvGivt~~dll~~-------------~~~~~v~~i------------m~~~~~~v~~~~~ 134 (205)
T 3kxr_A 86 DCNDNLFIV---DEAD---KYLGTVRRYDIFKH-------------EPHEPLISL------------LSEDSRALTANTT 134 (205)
T ss_dssp TTCCEEEEE---CTTC---BEEEEEEHHHHTTS-------------CTTSBGGGG------------CCSSCCCEETTSC
T ss_pred cCeeEEEEE---cCCC---eEEEEEEHHHHHhC-------------CCcchHHHH------------hcCCCeEECCCCC
Confidence 89999999 4567 89999999998731 012344444 8888999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 349 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 349 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
+.+|+++|.+++++.+||+|++|+++|+||..|++..+...
T Consensus 135 l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 135 LLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH 175 (205)
T ss_dssp HHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987654
No 48
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.67 E-value=1.6e-16 Score=137.30 Aligned_cols=119 Identities=23% Similarity=0.238 Sum_probs=98.9
Q ss_pred CC--CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc-CcccccCHHHHHhcCCCCC
Q 012109 336 NR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-INLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 336 m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~-l~~~~~~v~~~~~~~~~~~ 412 (471)
|. .+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+....... ......++.+
T Consensus 21 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~--------- 91 (150)
T 3lqn_A 21 MISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ--------- 91 (150)
T ss_dssp SEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG---------
T ss_pred ccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH---------
Confidence 66 45889999999999999999999999999999999999999999998764321100 0011234444
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
+|.+++.++.+++++.+|++.|.++++ +||+| ++|+++|+||..||++++.
T Consensus 92 ----~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd-~~g~~~Giit~~dil~~l~ 142 (150)
T 3lqn_A 92 ----VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN-EDGYFEGILTRRAILKLLN 142 (150)
T ss_dssp ----TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred ----HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC-CCCcEEEEEEHHHHHHHHH
Confidence 456789999999999999999999987 99999 5899999999999999874
No 49
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.66 E-value=2e-16 Score=141.00 Aligned_cols=123 Identities=24% Similarity=0.367 Sum_probs=99.1
Q ss_pred CCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc--------ccC---------
Q 012109 334 EPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY--------AHI--------- 394 (471)
Q Consensus 334 ~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~--------~~l--------- 394 (471)
++|.+ +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||+++...... ...
T Consensus 8 dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (180)
T 3sl7_A 8 DFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNE 87 (180)
T ss_dssp HHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCSHHH
T ss_pred HhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhHH
Confidence 34776 78999999999999999999999999999999999999999999853211000 000
Q ss_pred ------cccccCHHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 395 ------NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 395 ------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.....++.+ +|.++++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||+++
T Consensus 88 ~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil~~ 153 (180)
T 3sl7_A 88 LQKLISKTYGKVVGD-------------LMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD-ADGKLIGILTRGNVVRA 153 (180)
T ss_dssp HHHHHHTTTTCBHHH-------------HSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC-TTCBEEEEEEHHHHHHH
T ss_pred HHHHHhccccccHHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHH
Confidence 011234444 4566889999999999999999999999999999 58999999999999998
Q ss_pred hh
Q 012109 469 LL 470 (471)
Q Consensus 469 l~ 470 (471)
+.
T Consensus 154 ~~ 155 (180)
T 3sl7_A 154 AL 155 (180)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 50
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.66 E-value=2.2e-16 Score=133.98 Aligned_cols=119 Identities=13% Similarity=0.273 Sum_probs=100.0
Q ss_pred CCCC---CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 334 EPNR---RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 334 ~~m~---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
++|. ++++++.+++++.+|++.|.+++++++||+| +|+++|+||.+|+++....... .....++.++|
T Consensus 10 ~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~~m----- 80 (135)
T 2rc3_A 10 HLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK---PVKDTQVKEIM----- 80 (135)
T ss_dssp HHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS---CGGGSBGGGTS-----
T ss_pred HHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC---CcccCCHHHhc-----
Confidence 3366 7889999999999999999999999999998 8999999999999864322111 11234556544
Q ss_pred CCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 411 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 411 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
.+++.++.+++++.+|++.|.+++++++||+| +|+++|+||.+||++++.+
T Consensus 81 --------~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 81 --------TRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp --------BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred --------cCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHh
Confidence 66899999999999999999999999999999 4999999999999998753
No 51
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.66 E-value=1.4e-16 Score=141.08 Aligned_cols=137 Identities=20% Similarity=0.310 Sum_probs=102.4
Q ss_pred CCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccc-
Q 012109 242 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI- 320 (471)
Q Consensus 242 ~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v- 320 (471)
++++|+++++++.+++|+.+|+++|.+++++++||+ +++| +++|++|.+|+++.+........ ...+...+
T Consensus 20 V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVv---d~~g---~lvGiit~~Dll~~~~~~~~~~~--~~~~~~~~~ 91 (170)
T 4esy_A 20 IRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVV---DQNG---HLVGIITESDFLRGSIPFWIYEA--SEILSRAIP 91 (170)
T ss_dssp GGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEE---CTTS---CEEEEEEGGGGGGGTCCTTHHHH--HHHHTTTSC
T ss_pred HHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEE---cCCc---cEEEEEEHHHHHHHHhhccccch--hhhhhhccc
Confidence 345899999999999999999999999999999999 4667 89999999999876532210000 00000000
Q ss_pred ----ccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 012109 321 ----CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 387 (471)
Q Consensus 321 ----~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~ 387 (471)
....-......++++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++++.
T Consensus 92 ~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~ 161 (170)
T 4esy_A 92 APEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLL 161 (170)
T ss_dssp HHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSC
T ss_pred hhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 000000001123445899999999999999999999999999999998 699999999999998653
No 52
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.66 E-value=3.9e-16 Score=136.03 Aligned_cols=114 Identities=15% Similarity=0.328 Sum_probs=99.3
Q ss_pred CCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcccc
Q 012109 338 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 417 (471)
Q Consensus 338 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 417 (471)
++++++.+++++.+|+++|.+++++++||++ +|+++|+||.+|+++.+...... ....++.++|
T Consensus 21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~~m------------ 84 (157)
T 4fry_A 21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERS---SKATRVEEIM------------ 84 (157)
T ss_dssp CCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCC---SSSCBHHHHS------------
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCC---ccccCHHHHc------------
Confidence 4579999999999999999999999999965 89999999999999876443211 2246788876
Q ss_pred cCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 418 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 418 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||..||++++.
T Consensus 85 -~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~ 134 (157)
T 4fry_A 85 -TAKVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVI 134 (157)
T ss_dssp -BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred -CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence 55789999999999999999999999999999 499999999999999875
No 53
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.66 E-value=4.5e-16 Score=139.56 Aligned_cols=122 Identities=16% Similarity=0.270 Sum_probs=103.2
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCC
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 411 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 411 (471)
++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++........ .....++.++|
T Consensus 11 v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~---~~~~~~v~~im------ 81 (184)
T 1pvm_A 11 VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---KPDEVPIRLVM------ 81 (184)
T ss_dssp GGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC---CGGGSBGGGTS------
T ss_pred HHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc---CcccCCHHHHh------
Confidence 344588899999999999999999999999999999988999999999999987543110 01134555544
Q ss_pred CCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 412 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 412 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||..||++++.
T Consensus 82 -------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~ 132 (184)
T 1pvm_A 82 -------RKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS 132 (184)
T ss_dssp -------BSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred -------CCCCcEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence 66899999999999999999999999999999 5799999999999998753
No 54
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.66 E-value=5.1e-16 Score=135.19 Aligned_cols=123 Identities=17% Similarity=0.204 Sum_probs=100.7
Q ss_pred cCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccCcccccCHHHHHhcC
Q 012109 332 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHINLSEMTIHQALQLG 408 (471)
Q Consensus 332 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~-~~l~~~~~~v~~~~~~~ 408 (471)
++++|.+ +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++....... ....+...++.+
T Consensus 13 v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----- 87 (157)
T 2emq_A 13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE----- 87 (157)
T ss_dssp STTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG-----
T ss_pred HHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH-----
Confidence 3444775 78899999999999999999999999999988999999999999987643210 000011234444
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
+|.+++.++.+++++.+|++.|.++++ +||+| ++|+++|+||.+||++++.
T Consensus 88 --------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd-~~g~~~Giit~~dil~~~~ 138 (157)
T 2emq_A 88 --------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN-DDGYFAGIFTRREVLKQLN 138 (157)
T ss_dssp --------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC-SSSSEEEEEEHHHHHHHHH
T ss_pred --------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc-CCCeEEEEEEHHHHHHHHH
Confidence 456789999999999999999999987 99999 5799999999999999874
No 55
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.66 E-value=1.2e-15 Score=135.19 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=103.3
Q ss_pred cCCCCcccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCC-CCCCeEEEeeehhhHHHHHhhhccccCCCCcc
Q 012109 239 IDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQD-GSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 315 (471)
Q Consensus 239 ~~~~g~im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~-g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~ 315 (471)
...++.+|. ++++++.+++++.+|+++|.+++++++||++ ++ + +++|+++..|+++++....
T Consensus 41 ~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd---~~~~---~lvGivt~~dl~~~~~~~~--------- 105 (172)
T 3lhh_A 41 ERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCR---NNVD---DMVGIISAKQLLSESIAGE--------- 105 (172)
T ss_dssp --CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEES---SSTT---SEEEEEEHHHHHHHHHTTC---------
T ss_pred CCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEe---CCCC---eEEEEEEHHHHHHHHhhcC---------
Confidence 344567898 7889999999999999999999999999993 33 6 8999999999998765320
Q ss_pred cccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 316 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 316 ~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
..++.++ | ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.|+++.+..
T Consensus 106 -~~~v~~i------------m-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 106 -RLELVDL------------V-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp -CCCGGGG------------C-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred -cccHHHH------------h-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence 2344444 8 789999999999999999999999999999988999999999999997754
No 56
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.65 E-value=8.5e-16 Score=134.25 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=100.5
Q ss_pred CCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccc-cccCcccccCHHHHHhcCCCCC
Q 012109 336 NRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 336 m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~-~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
|.+ +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++....... +........++.++|
T Consensus 20 m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m------- 92 (159)
T 1yav_A 20 MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVM------- 92 (159)
T ss_dssp SEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHS-------
T ss_pred hCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHhc-------
Confidence 766 7899999999999999999999999999998899999999999998765421 100012245677765
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.+++.++.+++++.+|++.|.++++ +||+| ++|+++|+||.+||++++.
T Consensus 93 ------~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd-~~g~~vGiit~~dil~~~~ 141 (159)
T 1yav_A 93 ------LTDIPRLHINDPIMKGFGMVINNGF--VCVEN-DEQVFEGIFTRRVVLKELN 141 (159)
T ss_dssp ------BCSCCEEETTSBHHHHHHHTTTCSE--EEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred ------CCCCceEcCCCCHHHHHHHHHhCCE--EEEEe-CCCeEEEEEEHHHHHHHHH
Confidence 5689999999999999999999987 99999 5799999999999999874
No 57
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.65 E-value=6.9e-16 Score=140.77 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=100.6
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhc---CCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQA---QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~---~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
++++|.++++++.+++++.+|++.|.++ +++.+||+|++|+++|+||.+|++... ...++.++|
T Consensus 56 v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~im--- 122 (205)
T 3kxr_A 56 IGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----------PHEPLISLL--- 122 (205)
T ss_dssp GGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----------TTSBGGGGC---
T ss_pred HHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----------CcchHHHHh---
Confidence 3444889999999999999999999987 889999999999999999999987521 124566644
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.++++++++++++.+|++.|.+++++.+|||| ++|+++|+||..||++.+.
T Consensus 123 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD-~~g~lvGiIT~~Dil~~i~ 173 (205)
T 3kxr_A 123 ----------SEDSRALTANTTLLDAAEAIEHSREIELPVID-DAGELIGRVTLRAATALVR 173 (205)
T ss_dssp ----------CSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred ----------cCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence 66899999999999999999999999999999 5899999999999998874
No 58
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.64 E-value=2e-15 Score=130.21 Aligned_cols=120 Identities=12% Similarity=0.151 Sum_probs=102.7
Q ss_pred CCCcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccc
Q 012109 241 SHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 318 (471)
Q Consensus 241 ~~g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~ 318 (471)
.++.+|.+ +++++.+++++.+|++.|.+++++++||++ ++.| +++|++|.+|+++++.... ..
T Consensus 24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~~----------~~ 88 (148)
T 3lv9_A 24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCR--KNKD---DILGFVHIRDLYNQKINEN----------KI 88 (148)
T ss_dssp BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEES--SSTT---SEEEEEEHHHHHHHHHHHS----------CC
T ss_pred CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHhcCC----------Cc
Confidence 34568887 899999999999999999999999999993 2226 8999999999998765431 23
Q ss_pred ccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 319 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 319 ~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
++.++ | ++++++.+++++.+|+++|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus 89 ~v~~~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 89 ELEEI------------L-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp CGGGT------------C-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred cHHHh------------c-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 44444 7 788999999999999999999999999999998999999999999987643
No 59
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.64 E-value=3.5e-16 Score=136.39 Aligned_cols=113 Identities=12% Similarity=0.295 Sum_probs=98.2
Q ss_pred cCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCC-cEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 332 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDND-SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 332 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
++++|.+ +++++.+++++.+|+++|.+++++++||+|+++ +++|+||.+|+++....+ ...++.++|
T Consensus 40 v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~im--- 109 (156)
T 3oi8_A 40 VRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKSIL--- 109 (156)
T ss_dssp GGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHHHC---
T ss_pred HhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHHHc---
Confidence 3444775 689999999999999999999999999999874 999999999999865432 135788876
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 466 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil 466 (471)
. ++.++.+++++.+|++.|.+++++++||+| ++|+++|+||+.||+
T Consensus 110 ----------~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 110 ----------R-PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII 155 (156)
T ss_dssp ----------B-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred ----------C-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence 2 488999999999999999999999999999 589999999999986
No 60
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.64 E-value=1e-15 Score=127.22 Aligned_cols=116 Identities=21% Similarity=0.356 Sum_probs=101.3
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccc
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 323 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~ 323 (471)
.+|.++++++.+++++.+|++.|.+++.+.+||+ +++| +++|+++..|+++++... ..++.++
T Consensus 5 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~G~vt~~dl~~~~~~~-----------~~~v~~~ 67 (122)
T 3kpb_A 5 DILSKPPITAHSNISIMEAAKILIKHNINHLPIV---DEHG---KLVGIITSWDIAKALAQN-----------KKTIEEI 67 (122)
T ss_dssp HHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEE---CTTS---BEEEEECHHHHHHHHHTT-----------CCBGGGT
T ss_pred HhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEE---CCCC---CEEEEEEHHHHHHHHHhc-----------ccCHHHH
Confidence 3688899999999999999999999999999999 4567 899999999999876542 1134444
Q ss_pred cccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 324 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 324 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
|.+++.++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++++..
T Consensus 68 ------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 68 ------------MTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp ------------SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred ------------hcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 77889999999999999999999999999999988999999999999987643
No 61
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.64 E-value=4e-15 Score=139.32 Aligned_cols=139 Identities=17% Similarity=0.260 Sum_probs=103.9
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC--CcEEEEEeHHHHHHHHhccc--cccC------------
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAKDKA--YAHI------------ 394 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGivt~~dl~~~~~~~~--~~~l------------ 394 (471)
.++++|.++++++.+++++.+|.++|.+++++++||||++ ++++|+||++||++++.... ....
T Consensus 14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (250)
T 2d4z_A 14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGR 93 (250)
T ss_dssp BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC--
T ss_pred ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccccccc
Confidence 4566799999999999999999999999999999999964 68999999999998654321 0000
Q ss_pred ----------------cccc---------------------------------------------------------cCH
Q 012109 395 ----------------NLSE---------------------------------------------------------MTI 401 (471)
Q Consensus 395 ----------------~~~~---------------------------------------------------------~~v 401 (471)
.+.. .+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 173 (250)
T 2d4z_A 94 NGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTL 173 (250)
T ss_dssp -------------------------------------------------------------------------CCSCCBH
T ss_pred ccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccCh
Confidence 0000 000
Q ss_pred HHH-----HhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 012109 402 HQA-----LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471 (471)
Q Consensus 402 ~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~~ 471 (471)
.+. .......+....+|...++++.++++|.+|..+|...+++++||++ .|+++||||+.||++++.+
T Consensus 174 ~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 174 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred hhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence 000 0000000001125888999999999999999999999999999999 5999999999999999864
No 62
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.63 E-value=1.1e-15 Score=133.20 Aligned_cols=119 Identities=16% Similarity=0.229 Sum_probs=97.6
Q ss_pred CCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccccc
Q 012109 247 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 326 (471)
Q Consensus 247 ~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~ 326 (471)
..+++++.+++|+.+|+++|.+++++++||+ ++++ +++|++|.+|+++++....... ......++.++
T Consensus 24 ~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVv---d~~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~~~v~~i--- 91 (156)
T 3k6e_A 24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVV---TDEK---QFVGTIGLRDIMAYQMEHDLSQ---EIMADTDIVHM--- 91 (156)
T ss_dssp TTSSCCEETTSBHHHHHHHHTTSSSSEEEEE---CC-C---BEEEEEEHHHHHHHHHHHTCCH---HHHTTSBGGGT---
T ss_pred hhHeEEECCcCCHHHHHHHHHHcCCcEEEEE---cCCC---cEEEEEEecchhhhhhhccccc---ccccccCHHHh---
Confidence 3689999999999999999999999999999 4567 8999999999998876532110 01123344444
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 327 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 327 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
|.++++++.+++++.+|+++|.+++ .+||+|++|+++|+||++|+++.+..
T Consensus 92 ---------m~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~ 142 (156)
T 3k6e_A 92 ---------TKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp ---------CBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred ---------hcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHH
Confidence 8889999999999999999998766 49999999999999999999997644
No 63
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.63 E-value=8.8e-16 Score=141.06 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=102.8
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHh
Q 012109 327 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ 406 (471)
Q Consensus 327 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~ 406 (471)
+|...++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+.+... +.++.++
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~i-- 77 (213)
T 1vr9_A 10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFNK-- 77 (213)
T ss_dssp ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGGG--
T ss_pred ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHHH--
Confidence 3444556668999999999999999999999999999999998899999999999986432 2345554
Q ss_pred cCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 407 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
|.++++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++.
T Consensus 78 -----------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~Dil~~~~ 129 (213)
T 1vr9_A 78 -----------VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALI 129 (213)
T ss_dssp -----------CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred -----------ccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence 466899999999999999999999999999999 5799999999999998764
No 64
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.62 E-value=1.1e-15 Score=128.49 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=101.4
Q ss_pred CCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 242 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 242 ~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
++.+|.+++.++.+++++.+|++.|.+++.+.+||++ + | +++|+++.+|+++.+..... ...++.
T Consensus 7 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~-~---~~~Givt~~dl~~~~~~~~~--------~~~~v~ 71 (128)
T 3gby_A 7 FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLD---G-E---RYLGMVHLSRLLEGRKGWPT--------VKEKLG 71 (128)
T ss_dssp GGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHTTCSSSCC--------TTCBCC
T ss_pred HHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEE---C-C---EEEEEEEHHHHHHHHhhCCc--------ccCcHH
Confidence 3457999999999999999999999999999999993 4 7 89999999999865432110 012333
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
++ |.+++.++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++.+..
T Consensus 72 ~~------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 72 EE------------LLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp GG------------GCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred HH------------ccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 33 77889999999999999999999999999999999999999999999987653
No 65
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.62 E-value=2e-15 Score=127.09 Aligned_cols=117 Identities=11% Similarity=0.192 Sum_probs=96.7
Q ss_pred CcccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccc
Q 012109 243 GKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 320 (471)
Q Consensus 243 g~im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v 320 (471)
+.+|. ++++++.+++++.+|+++|.+++++++||++ ++.+ +++|+++.+|+++++... ..++
T Consensus 8 ~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~~Givt~~dl~~~~~~~-----------~~~v 71 (129)
T 3jtf_A 8 ADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYE--DDRD---NIIGILLAKDLLRYMLEP-----------ALDI 71 (129)
T ss_dssp HHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEES--SSTT---CEEEEEEGGGGGGGGTCT-----------TSCG
T ss_pred HHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCC---cEEEEEEHHHHHhHhccC-----------CcCH
Confidence 34677 6789999999999999999999999999993 2236 899999999998754310 2234
Q ss_pred ccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 321 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 321 ~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
.++ |. +++++.+++++.+|+++|.+++.+.+||+|++|+++|+||++|+++.+..
T Consensus 72 ~~~------------m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 72 RSL------------VR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp GGG------------CB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred HHH------------hC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 444 64 47899999999999999999999999999988999999999999987643
No 66
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.62 E-value=4.4e-15 Score=125.42 Aligned_cols=120 Identities=20% Similarity=0.318 Sum_probs=102.7
Q ss_pred CCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 242 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 242 ~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
++.+|.++++++.+++++.+|++.|.+++.+.+||++ +| +++|+++..|+++++..... ...++.
T Consensus 6 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~~~v~ 70 (133)
T 2ef7_A 6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LETKAE 70 (133)
T ss_dssp GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTCBGG
T ss_pred HHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cccCHH
Confidence 3557888999999999999999999999999999993 56 89999999999987654311 123444
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
++ |.+++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++.+..
T Consensus 71 ~~------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 125 (133)
T 2ef7_A 71 EF------------MTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD 125 (133)
T ss_dssp GT------------SEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred HH------------cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence 44 77789999999999999999999999999999988999999999999987654
No 67
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.61 E-value=1.7e-15 Score=127.82 Aligned_cols=119 Identities=12% Similarity=0.126 Sum_probs=98.7
Q ss_pred ccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 245 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 245 im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
+|. ++++++.+++++.+|+++|.+++++++||++ ++++ +++|+++.+|+++++.... .+...++.+
T Consensus 7 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~--~~~~---~lvGivt~~dl~~~~~~~~-------~~~~~~v~~ 74 (130)
T 3hf7_A 7 IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYR--DSLD---DAISMLRVREAYRLMTEKK-------EFTKEIMLR 74 (130)
T ss_dssp HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEES--SSGG---GEEEEEEHHHHHHHHTSSS-------CCCHHHHHH
T ss_pred hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEc--CCCC---cEEEEEEHHHHHHHHhccC-------ccchhhHHH
Confidence 574 4689999999999999999999999999993 3356 8999999999998765321 011223444
Q ss_pred ccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 323 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+ | ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+..
T Consensus 75 ~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 75 A------------A-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp H------------S-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred h------------c-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence 4 6 567899999999999999999999999999999999999999999987643
No 68
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.61 E-value=2.7e-15 Score=126.44 Aligned_cols=120 Identities=10% Similarity=0.131 Sum_probs=100.0
Q ss_pred CCCcccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccc
Q 012109 241 SHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 318 (471)
Q Consensus 241 ~~g~im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~ 318 (471)
.++.+|. .+++++.+++++.+|+++|.+++++++||++ ++.+ +++|+++.+|+++++.... ...
T Consensus 7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~~Givt~~dl~~~~~~~~---------~~~ 72 (130)
T 3i8n_A 7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYS--EQKD---NIIGFVHRLELFKMQQSGS---------GQK 72 (130)
T ss_dssp CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEES--SSTT---CEEEECCHHHHHHHHHTTT---------TTS
T ss_pred CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---cEEEEEEHHHHHHHHhcCC---------CcC
Confidence 3456787 5577999999999999999999999999993 2336 8999999999998765421 123
Q ss_pred ccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 012109 319 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 387 (471)
Q Consensus 319 ~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~ 387 (471)
++.++ | +++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus 73 ~v~~~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 73 QLGAV------------M-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp BHHHH------------S-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred CHHHH------------h-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence 44444 6 35789999999999999999999999999999999999999999998753
No 69
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.61 E-value=1.2e-15 Score=129.66 Aligned_cols=118 Identities=8% Similarity=0.102 Sum_probs=97.5
Q ss_pred cccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 244 KAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 244 ~im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
.+|. ++++++.+++++.+|+++|.+++++++||++ ++.+ +++|+++.+|+++++.... ....++.
T Consensus 7 ~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd--~~~~---~~vGivt~~dl~~~~~~~~--------~~~~~v~ 73 (136)
T 3lfr_A 7 DIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIG--ESHD---DVLGVLLAKDLLPLILKAD--------GDSDDVK 73 (136)
T ss_dssp HHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGGGSSS--------GGGCCGG
T ss_pred hccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHHhcc--------CCCcCHH
Confidence 3676 6789999999999999999999999999993 2326 8999999999997654210 1123444
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 387 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~ 387 (471)
++ |.+ ++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+.
T Consensus 74 ~~------------m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~ 126 (136)
T 3lfr_A 74 KL------------LRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV 126 (136)
T ss_dssp GT------------CBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred HH------------cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 44 755 889999999999999999999999999999999999999999998654
No 70
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.61 E-value=1.7e-15 Score=135.60 Aligned_cols=133 Identities=13% Similarity=0.209 Sum_probs=98.7
Q ss_pred CCCC----ceEe--cCCCcHHHHHHHHHhcCCCEEEEE--cCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHH--
Q 012109 336 NRRP----LAML--RPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL-- 405 (471)
Q Consensus 336 m~~~----~~~v--~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~-- 405 (471)
|.+. ++++ .+++++.+|+++|.+++++++||+ |++|+++|+||.+|+++...........+....+..+.
T Consensus 17 m~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (185)
T 2j9l_A 17 MKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEH 96 (185)
T ss_dssp SBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSS
T ss_pred hcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccccceeecccC
Confidence 6665 7788 999999999999999999999999 78899999999999998764321100000000000000
Q ss_pred -----hcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 406 -----QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 406 -----~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
..........++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||+.||++++.
T Consensus 97 ~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dll~~l~ 164 (185)
T 2j9l_A 97 SPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIA 164 (185)
T ss_dssp CCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred CcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence 000001112335677899999999999999999999999999999 599999999999999874
No 71
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.60 E-value=1.9e-15 Score=126.73 Aligned_cols=116 Identities=12% Similarity=0.157 Sum_probs=96.6
Q ss_pred cccCCC--ceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 244 KAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 244 ~im~~~--~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
.+|.++ ++++.+++++.+|++.|.+++++++||++ ++.| +++|+++.+|+++.+.... ...++.
T Consensus 7 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~vGivt~~dl~~~~~~~~---------~~~~v~ 72 (127)
T 3nqr_A 7 DIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKD---HIEGILMAKDLLPFMRSDA---------EAFSMD 72 (127)
T ss_dssp HHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGGSTTC---------CCCCHH
T ss_pred HhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHhccC---------CCCCHH
Confidence 367744 89999999999999999999999999993 2326 8999999999987654211 123444
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
++ |.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|+||++|+++.+
T Consensus 73 ~~------------m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (127)
T 3nqr_A 73 KV------------LRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 124 (127)
T ss_dssp HH------------CBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred HH------------cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 44 644 67899999999999999999999999999999999999999999864
No 72
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.60 E-value=4.2e-15 Score=124.01 Aligned_cols=118 Identities=16% Similarity=0.273 Sum_probs=100.7
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccc
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 323 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~ 323 (471)
.+|.++++++.+++++.+|++.|.+++.+.+||+ + +| +++|+++..|+++++..... ....++.++
T Consensus 5 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d-~~---~~~G~it~~dl~~~~~~~~~-------~~~~~v~~~ 70 (125)
T 1pbj_A 5 DVMVTDVDTIDITASLEDVLRNYVENAKGSSVVV---K-EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVWEV 70 (125)
T ss_dssp HHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEE---E-TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHHHH
T ss_pred HhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEE---e-CC---eeEEEEeHHHHHHHHhcCCc-------ccccCHHHH
Confidence 3688899999999999999999999999999999 3 57 89999999999987654311 123345554
Q ss_pred cccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 324 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 324 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
|.+++.++.+++++.++++.|.+++++++||+|+ |+++|+||.+|+++.+..
T Consensus 71 ------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 71 ------------MERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA 122 (125)
T ss_dssp ------------CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred ------------cCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 7778999999999999999999999999999997 999999999999987654
No 73
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.60 E-value=7.9e-15 Score=127.75 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=97.9
Q ss_pred cCCCCcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccc
Q 012109 239 IDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL 316 (471)
Q Consensus 239 ~~~~g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~ 316 (471)
...++.+|.+ +++++.+++++.+|+++|.+++++++||++ ++.+ +++|+++.+|+++++... .
T Consensus 37 ~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~----------~ 101 (156)
T 3oi8_A 37 DLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIG--EDKD---EVLGILHAKDLLKYMFNP----------E 101 (156)
T ss_dssp TCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGSSCG----------G
T ss_pred CCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHHcC----------C
Confidence 4455678986 789999999999999999999999999993 3335 799999999998654321 1
Q ss_pred ccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHH
Q 012109 317 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 383 (471)
Q Consensus 317 ~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~ 383 (471)
..++.++ |.+ ++++.+++++.+|+++|.+++.+.+||+|++|+++|+||..|++
T Consensus 102 ~~~v~~i------------m~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 102 QFHLKSI------------LRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp GCCHHHH------------CBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred cccHHHH------------cCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 2344444 654 78999999999999999999999999999999999999999985
No 74
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.59 E-value=7.9e-15 Score=124.61 Aligned_cols=120 Identities=17% Similarity=0.370 Sum_probs=101.2
Q ss_pred CcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhH-HHHHhhhccccCCCCcccccccc
Q 012109 243 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI-LKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 243 g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~di-l~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
+.+|.++++++.+++++.+|++.|.+++.+.+||+ +++| +++|+++..|+ ++++.... ....++.
T Consensus 11 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~--------~~~~~v~ 76 (138)
T 2p9m_A 11 KDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVI---DDEN---KVIGIVTTTDIGYNLIRDKY--------TLETTIG 76 (138)
T ss_dssp GGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEE---CTTC---BEEEEEEHHHHHHHHTTTCC--------CSSCBHH
T ss_pred HHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEE---CCCC---eEEEEEEHHHHHHHHHhhcc--------cCCcCHH
Confidence 45788899999999999999999999999999999 3457 89999999999 87654211 1233455
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
++ |.+++.++.+++++.++++.|.+++ ++++||+|++|+++|+||.+|+++.+..
T Consensus 77 ~~------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 77 DV------------MTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp HH------------SCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred HH------------hCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 44 7788999999999999999999999 9999999988999999999999987643
No 75
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.59 E-value=1.6e-14 Score=122.78 Aligned_cols=122 Identities=16% Similarity=0.326 Sum_probs=101.7
Q ss_pred CCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 242 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 242 ~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
++.+|.++++++.+++++.+|++.|.+++++.+||+ +++| +++|+++..|+++.+..... ....++.
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~ 75 (138)
T 2yzi_A 9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVI---NDDG---NVVGFFTKSDIIRRVIVPGL-------PYDIPVE 75 (138)
T ss_dssp GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHHHHTTTTCC-------CTTSBGG
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEEeHHHHHHHHHhcCC-------cccCCHH
Confidence 455788999999999999999999999999999999 3467 89999999999854322100 1123344
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
++ |.+++.++.+++++.+++++|.+++++++ |+|++|+++|+||..|+++.+...
T Consensus 76 ~~------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~ 130 (138)
T 2yzi_A 76 RI------------MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRR 130 (138)
T ss_dssp GT------------CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCC
T ss_pred HH------------hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHH
Confidence 44 88889999999999999999999999999 999889999999999999987653
No 76
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.58 E-value=4.2e-15 Score=128.96 Aligned_cols=118 Identities=11% Similarity=0.144 Sum_probs=101.3
Q ss_pred CcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEE-ecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccc
Q 012109 243 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPII-HSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 319 (471)
Q Consensus 243 g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVv-d~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~ 319 (471)
+.+|.+ +++++.+++++.+|+++|.+++++++||+ + ++.| +++|++|..|+++++.... ..+
T Consensus 23 ~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d--~~~~---~lvGivt~~dl~~~~~~~~----------~~~ 87 (153)
T 3oco_A 23 SDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTAD--NDKD---KIIGYAYNYDIVRQARIDD----------KAK 87 (153)
T ss_dssp HHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEET--TEEE---EEEEEEEHHHHHHHHHHHT----------TSB
T ss_pred eeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEEC--CCCC---cEEEEEEHHHHHhHHhcCC----------CCc
Confidence 346775 89999999999999999999999999999 3 2346 8999999999998775431 234
Q ss_pred cccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 320 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 320 v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+.++ | ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+..
T Consensus 88 v~~~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 88 ISTI------------M-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp GGGT------------C-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred HHHH------------h-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence 4444 8 789999999999999999999999999999999999999999999997754
No 77
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.58 E-value=1.8e-14 Score=135.22 Aligned_cols=212 Identities=10% Similarity=0.166 Sum_probs=129.7
Q ss_pred ccccccccccee-EEEEeCCCCHHHHHHHHHHcCCcccccccCCCCeeeeecchHHHHHHHHHhccCCCCCChhhHhhhc
Q 012109 146 EAAERISEADLQ-VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT 224 (471)
Q Consensus 146 ~~~~~~~~~~~~-vi~l~~~~sv~~A~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~ 224 (471)
++..++.+.+.. ++++++++++.+|++.|.+++++.+||+|. .++++|++|..|+++.+..... ..........
T Consensus 4 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~l~Giit~~di~~~~~~~~~----~~~~~~~~~~ 78 (245)
T 3l2b_A 4 MVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNITATYMDIWD----SNILAKSATS 78 (245)
T ss_dssp CCCCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHHCCCC----TTHHHHTTCC
T ss_pred cccCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHhhh----hhhhhhccCC
Confidence 455678888765 899999999999999999999999999986 4789999999999987743110 0001111112
Q ss_pred HHHHHHHHhhh-cccc------------------CCCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCC-
Q 012109 225 ISAWKEGKAYL-NRQI------------------DSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDG- 284 (471)
Q Consensus 225 i~~~~~~~~~~-~~~~------------------~~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g- 284 (471)
+..+....... -... .....+....++.+ . .-.++...+.+.+++.+++........
T Consensus 79 ~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIv-g--dr~~~~~~~i~~~~~~liit~~~~~~~~ 155 (245)
T 3l2b_A 79 LDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIA-G--DRAEIQAELIELKVSLLIVTGGHTPSKE 155 (245)
T ss_dssp HHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEE-C--SCHHHHHHHHHTTCSEEEECTTCCCCHH
T ss_pred HHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEE-C--CCHHHHHHHHHcCCCEEEECCCCCCCHH
Confidence 22221111000 0000 00000112233333 2 237888899999999988873111000
Q ss_pred -----CCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccccccCCCCC-CCceEecCCCcHHHHHHHHHh
Q 012109 285 -----SFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLVQ 358 (471)
Q Consensus 285 -----~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~ 358 (471)
....+..+.+..|........ ....+++++ |. ++++++.+++++.+|+++|.+
T Consensus 156 v~~~a~~~~~~~i~t~~d~~~~~~~~---------~~~~~v~~i------------m~~~~~~~~~~~~~~~~~~~~m~~ 214 (245)
T 3l2b_A 156 IIELAKKNNITVITTPHDSFTASRLI---------VQSLPVDYV------------MTKDNLVAVSTDDLVEDVKVTMSE 214 (245)
T ss_dssp HHHHHHHHTCEEEECSSCHHHHHHHG---------GGGSBHHHH------------SBCTTCCCEETTSBHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEeCCChHHHHHHH---------hcCCceeeE------------ecCCccEEECCCCcHHHHHHHHHh
Confidence 000123344444433221111 112234444 88 889999999999999999999
Q ss_pred cCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 359 AQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 359 ~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
++++++||+|++|+++|+||.+|+++..
T Consensus 215 ~~~~~~pVvd~~~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 215 TRYSNYPVIDENNKVVGSIARFHLISTH 242 (245)
T ss_dssp HCCSEEEEECTTCBEEEEEECC------
T ss_pred cCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence 9999999999999999999999999764
No 78
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.58 E-value=1.3e-14 Score=126.99 Aligned_cols=128 Identities=18% Similarity=0.285 Sum_probs=102.9
Q ss_pred CCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCC-CCccccccc
Q 012109 242 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-SLPILKLPI 320 (471)
Q Consensus 242 ~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~-~~~~~~~~v 320 (471)
++.+|.++++++.+++++.+|+++|.+++++.+||+ +++| +++|+++..|+++++......... .......++
T Consensus 7 v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv---d~~~---~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v 80 (160)
T 2o16_A 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIV---DANK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL 80 (160)
T ss_dssp GGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEEeHHHHHHHHHHhhcccccccchhcccCH
Confidence 345788899999999999999999999999999999 3567 899999999999887643211000 000112334
Q ss_pred ccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 321 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 321 ~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
.++ |.++++++.+++++.+|+++|.+++++++||+|+ |+++|+||.+||++++..
T Consensus 81 ~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 81 FEV------------MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp HHH------------SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred HHH------------hcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 444 8889999999999999999999999999999997 999999999999987643
No 79
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.58 E-value=1.3e-14 Score=126.81 Aligned_cols=120 Identities=17% Similarity=0.304 Sum_probs=100.6
Q ss_pred CcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 243 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 243 g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
+.+|.++ +++.+++++.+|+++|.+++++.+||+ +++| +++|++|..|+++++.... .....++.+
T Consensus 20 ~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~v~~ 85 (159)
T 3fv6_A 20 KDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVV---DRDA---VLVGVLSRKDLLRASIGQQ-------ELTSVPVHI 85 (159)
T ss_dssp GGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHHHHHTSCS-------CTTTCBGGG
T ss_pred HHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEE---cCCC---cEEEEEeHHHHHHHhhccC-------cccCcCHHH
Confidence 4578874 599999999999999999999999999 4567 8999999999998764321 112334444
Q ss_pred ccccccccccCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCC---cEEEEEeHHHHHHHHhc
Q 012109 323 IPVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDND---SLLDIYCRSDITALAKD 388 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---~lvGivt~~dl~~~~~~ 388 (471)
+ |.+ +++++.+++++.+|+++|.+++++++||+|++| +++|+||.+||++++.+
T Consensus 86 ~------------m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 86 I------------MTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp T------------SEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred H------------HcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence 4 776 889999999999999999999999999999888 99999999999987654
No 80
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.57 E-value=1.2e-14 Score=125.38 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=99.6
Q ss_pred ccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 245 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 245 im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
+|. .+++++.+++++.+|++.|.+++++++||+ +++| +++|++|..|+++++....... .......++
T Consensus 20 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv---d~~~---~~~Givt~~dl~~~~~~~~~~~--~~~~~~~~v-- 89 (150)
T 3lqn_A 20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVL---DPMY---KLHGLISTAMILDGILGLERIE--FERLEEMKV-- 89 (150)
T ss_dssp HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEEHHHHHHHTBCSSSBC--GGGGGGCBG--
T ss_pred cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEE---CCCC---CEEEEEEHHHHHHHHHhhcccc--hhHHhcCCH--
Confidence 576 468999999999999999999999999999 4567 8999999999998775321100 000112333
Q ss_pred ccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 323 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
+++|.++++++.+++++.+|+++|.++++ +||+|++|+++|+||.+|+++++...
T Consensus 90 ----------~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 90 ----------EQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKK 144 (150)
T ss_dssp ----------GGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred ----------HHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHH
Confidence 34488899999999999999999999886 99999899999999999999987553
No 81
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.57 E-value=1.5e-14 Score=123.52 Aligned_cols=118 Identities=18% Similarity=0.307 Sum_probs=99.6
Q ss_pred CcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCC-CCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 243 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQD-GSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 243 g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~-g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
+.+|.++++++.+++++.+|++.|.+++++.+||++ ++. . +++|+++..|+++++.... ....++.
T Consensus 8 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~---~~~Givt~~dl~~~~~~~~--------~~~~~v~ 74 (141)
T 2rih_A 8 SELLKRPPVSLPETATIREVATELAKNRVGLAVLTA--RDNPK---RPVAVVSERDILRAVAQRL--------DLDGPAM 74 (141)
T ss_dssp GGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEE---EEEEEEEHHHHHHHHHTTC--------CTTSBSG
T ss_pred HHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEc--CCCcc---eeEEEEEHHHHHHHHhcCC--------CCCCCHH
Confidence 457889999999999999999999999999999995 221 2 5999999999998765321 1123444
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
++ |.++++++.++ ++.+|+++|.+++.+++||+|++|+++|+||.+|+++..
T Consensus 75 ~~------------m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 126 (141)
T 2rih_A 75 PI------------ANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 126 (141)
T ss_dssp GG------------CBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred HH------------cCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence 44 88899999999 999999999999999999999889999999999998754
No 82
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.57 E-value=8.7e-15 Score=128.68 Aligned_cols=117 Identities=15% Similarity=0.278 Sum_probs=100.1
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
.+++++.+++++.+|+++|.+++++.+||+ +++| +++|+++..|+++++...... ....++.++
T Consensus 35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v~~~---- 98 (165)
T 3fhm_A 35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVT---DADG---VVLGIFTERDLVKAVAGQGAA------SLQQSVSVA---- 98 (165)
T ss_dssp SCCCEECTTSBHHHHHHHHHHHTCSEEEEE---CTTS---CEEEEEEHHHHHHHHHHHGGG------GGTSBGGGT----
T ss_pred CCCeEECCCCCHHHHHHHHHHcCCCEEEEE---cCCC---eEEEEEEHHHHHHHHHhcCCc------cccCCHHHH----
Confidence 368999999999999999999999999999 4567 899999999999887654211 123444444
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
|.++++++.+++++.+|+++|.+++++++||+|+ |+++|+||..||++++...
T Consensus 99 --------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~ 151 (165)
T 3fhm_A 99 --------MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGE 151 (165)
T ss_dssp --------SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC
T ss_pred --------hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence 8888999999999999999999999999999998 9999999999999986543
No 83
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.57 E-value=1.4e-14 Score=122.77 Aligned_cols=118 Identities=15% Similarity=0.317 Sum_probs=99.0
Q ss_pred ccC---CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 245 AFP---RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 245 im~---~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
+|. ++++++.+++++.+|++.|.+++++.+||++ +| +++|+++..|+++.+..... .....++.
T Consensus 11 im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v~ 77 (135)
T 2rc3_A 11 LLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDTQVK 77 (135)
T ss_dssp HHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGSBGG
T ss_pred HHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------CcccCCHH
Confidence 566 7899999999999999999999999999993 56 89999999999865432210 01233444
Q ss_pred cccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 322 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
++ |.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+++.+..
T Consensus 78 ~~------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 78 EI------------MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp GT------------SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred Hh------------ccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence 44 888899999999999999999999999999999 7999999999999987654
No 84
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.56 E-value=2e-14 Score=128.73 Aligned_cols=122 Identities=15% Similarity=0.211 Sum_probs=102.3
Q ss_pred CcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 243 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 243 g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
+.+|.++++++.+++++.+|+++|.+++++++||+ +++| +++|+++..|+++++..... .....++.+
T Consensus 12 ~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVv---d~~g---~~vGivt~~dl~~~~~~~~~------~~~~~~v~~ 79 (184)
T 1pvm_A 12 EKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVK---DDNG---NDVGLLSERSIIKRFIPRNK------KPDEVPIRL 79 (184)
T ss_dssp GGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEE---CTTS---CEEEEEEHHHHHHHTGGGCC------CGGGSBGGG
T ss_pred HHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE---cCCC---cEEEEEeHHHHHHHHhhccc------CcccCCHHH
Confidence 45788999999999999999999999999999999 3457 89999999999987653210 011233444
Q ss_pred ccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 323 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+ |.++++++.+++++.+|+++|.+++.+.+||+|++|+++|+||..||++++..
T Consensus 80 i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 80 V------------MRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp T------------SBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred H------------hCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 4 88889999999999999999999999999999988999999999999986543
No 85
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.56 E-value=2.5e-14 Score=122.26 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=98.0
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
+|.++++++.+++++.+|++.|.+++++.+||+ +++| +++|+++..|+++++..... .....++.++
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v~~~- 82 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII---DENG---YLINVYEAYDVLGLIKGGIY------NDLSLSVGEA- 82 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEEHHHHHHHHHTC----------CCSBHHHH-
T ss_pred CCCCCceEECCCCcHHHHHHHHHHcCcceeeEE---cCCC---cEEEEEcHHHHHHHhccccc------ccCCccHHHH-
Confidence 678899999999999999999999999999999 3457 89999999999987653210 0112344443
Q ss_pred ccccccccCCCCCC------CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 325 VGTWVPKIGEPNRR------PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 325 i~~~~~~v~~~m~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
|.+ ++.++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++.+..
T Consensus 83 -----------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 83 -----------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp -----------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred -----------HhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 433 68899999999999999999999999999988999999999999987643
No 86
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.56 E-value=7e-15 Score=141.21 Aligned_cols=115 Identities=15% Similarity=0.247 Sum_probs=102.0
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhc-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHh
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ 406 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~ 406 (471)
++++|.++++++.+++++.+|++.|.++ +++++||+|++|+++|+||.+|++... ...++.++|
T Consensus 139 v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----------~~~~v~~im- 207 (286)
T 2oux_A 139 AGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIADIL- 207 (286)
T ss_dssp HHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHHHS-
T ss_pred HHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----------CCCcHHHHc-
Confidence 3445888999999999999999999987 888999999899999999999998641 135778766
Q ss_pred cCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 407 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.++++++++++++.+|++.|.+++++++|||| ++|+++|+||..||++.+.
T Consensus 208 ------------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIT~~Dil~~i~ 258 (286)
T 2oux_A 208 ------------NERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVID 258 (286)
T ss_dssp ------------BSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred ------------CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence 56899999999999999999999999999999 5899999999999998864
No 87
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.56 E-value=1.9e-14 Score=124.27 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=99.6
Q ss_pred CcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccc
Q 012109 243 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 320 (471)
Q Consensus 243 g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v 320 (471)
+.+|.+ +++++.+++++.+|+++|.+++++.+||+ +++| +++|++|..|+++++.... .....++
T Consensus 31 ~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~v 97 (149)
T 3k2v_A 31 NDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAIC---DDDM---NIIGIFTDGDLRRVFDTGV-------DMRDASI 97 (149)
T ss_dssp GGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEE---CTTC---BEEEEEEHHHHHHHHCSSS-------CCTTCBH
T ss_pred HHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEE---CCCC---cEEEEecHHHHHHHHhcCC-------CcccCcH
Confidence 457888 89999999999999999999999999999 4567 8999999999998775421 1123455
Q ss_pred ccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 012109 321 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 384 (471)
Q Consensus 321 ~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~ 384 (471)
.++ |.++++++.+++++.+|+++|.+++++.+||+|++ +++|+||.+||++
T Consensus 98 ~~~------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 98 ADV------------MTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp HHH------------SEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred HHH------------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 555 77788999999999999999999999999999965 9999999999864
No 88
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.56 E-value=1.5e-14 Score=124.87 Aligned_cols=129 Identities=16% Similarity=0.223 Sum_probs=100.4
Q ss_pred CCcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccc------cCCCC
Q 012109 242 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH------CSSSL 313 (471)
Q Consensus 242 ~g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~------~~~~~ 313 (471)
++.+|.+ +++++.+++++.+|++.|.+++++.+||+ ++++ +++|+++..|+++++...... .....
T Consensus 7 v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~ 80 (152)
T 4gqw_A 7 VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVI---DEDW---KLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS 80 (152)
T ss_dssp GGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEE---CTTC---BEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred hhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEE---eCCC---eEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence 3457877 89999999999999999999999999999 4557 899999999998643211000 00000
Q ss_pred cccccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 314 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 314 ~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
.....++.+ +|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+..
T Consensus 81 ~~~~~~v~~------------~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 81 KTNGKLVGD------------LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp ---CCBHHH------------HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred HhccccHHH------------hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence 011223333 377788999999999999999999999999999989999999999999997654
No 89
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.55 E-value=6.1e-14 Score=124.34 Aligned_cols=122 Identities=7% Similarity=0.095 Sum_probs=101.6
Q ss_pred cCCCCcccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccc
Q 012109 239 IDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL 316 (471)
Q Consensus 239 ~~~~g~im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~ 316 (471)
...++.+|. ++++++.+++++.+|+++|.+++++++||++ ++.+ +++|+++.+|+++++....
T Consensus 35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~Dl~~~~~~~~---------- 99 (173)
T 3ocm_A 35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCR--GSLD---EVVGIGRAKDLVADLITEG---------- 99 (173)
T ss_dssp TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEES--SSTT---SEEEEEEHHHHHHHHHHHS----------
T ss_pred CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---CEEEEEEHHHHHHHHhcCC----------
Confidence 445677896 4689999999999999999999999999993 3336 8999999999998765321
Q ss_pred ccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 317 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 317 ~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
..++. + | ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|++..+...
T Consensus 100 ~~~v~-~------------~-~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~ 158 (173)
T 3ocm_A 100 RVRRN-R------------L-RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGE 158 (173)
T ss_dssp SCCGG-G------------S-BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred cchhH-h------------c-CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence 11222 2 3 4678999999999999999999999999999999999999999999987653
No 90
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.55 E-value=4.7e-14 Score=122.12 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=97.3
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++++++.+++++.+|+++|.+++++.+||+ +++| +++|+++..|+++++..... .....++.++
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv---d~~~---~~vGivt~~dl~~~~~~~~~------~~~~~~v~~~---- 92 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVV---DEKG---RVVDIYSKFDVINLAAEKTY------NNLDVSVTKA---- 92 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEE---CTTS---BEEEEEEHHHHHHHHHCSSC------CCTTSBGGGG----
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEE---CCCC---cEEEEEeHHHHHHHhcchhh------hhhcchHHHH----
Confidence 678899999999999999999999999999 3557 89999999999987653210 0112334443
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 387 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~ 387 (471)
+. ...+|.++++++.+++++.+|+++|.+++.+++||+|++|+++|+||..|+++.+.
T Consensus 93 -m~-~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 93 -LQ-HRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALV 150 (152)
T ss_dssp -GG-TCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHC
T ss_pred -Hh-hhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHHHH
Confidence 10 00011267899999999999999999999999999998899999999999998753
No 91
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.55 E-value=1.3e-14 Score=138.77 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=99.9
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHhc-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHh
Q 012109 332 IGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ 406 (471)
Q Consensus 332 v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~ 406 (471)
++++|.++++++.+++++.+|++.|.++ +++++||+|++|+++|+||.+|++... ...++.++
T Consensus 137 v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~i-- 204 (278)
T 2yvy_A 137 AGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAEI-- 204 (278)
T ss_dssp GGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTTT--
T ss_pred HHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHHH--
Confidence 3455888999999999999999999987 789999999889999999999998631 12345554
Q ss_pred cCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 407 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
|.+++++|++++++.+|++.|.+++.+.+|||| ++|+++|+||..||++.+.
T Consensus 205 -----------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivT~~Dil~~i~ 256 (278)
T 2yvy_A 205 -----------MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE 256 (278)
T ss_dssp -----------SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHC-
T ss_pred -----------hCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe-CCCeEEEEEEHHHHHHHHH
Confidence 467899999999999999999999999999999 5799999999999999875
No 92
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.55 E-value=5.5e-14 Score=122.41 Aligned_cols=126 Identities=15% Similarity=0.212 Sum_probs=100.5
Q ss_pred CcccCCCceecCCCCCHHHHHHHHHhCCccE-EEEEecCCCCCCCCeEEEeeehhhHHHHHhhhc----cccCCC----C
Q 012109 243 GKAFPRPLVYAGPNDNLKDVARKILHNEVAT-VPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF----RHCSSS----L 313 (471)
Q Consensus 243 g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~-lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~----~~~~~~----~ 313 (471)
+.+|.++++++.+++++.+|+++|.+++++. +||++ ++ +++|++|..|+++++.... ...... .
T Consensus 19 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd----~~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 91 (157)
T 1o50_A 19 CKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR----DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK 91 (157)
T ss_dssp TTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE----TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred hhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEE----CC---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHH
Confidence 4579999999999999999999999999999 99994 23 6999999999998764210 000000 0
Q ss_pred cccccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 314 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 314 ~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
.....++ +++|.+ ++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+..
T Consensus 92 ~~~~~~v------------~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 92 RLIAKNA------------SEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK 153 (157)
T ss_dssp CCSSCBH------------HHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred HHcCCcH------------HHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence 0112233 344888 9999999999999999999999999999988999999999999987654
No 93
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.54 E-value=6.3e-14 Score=121.81 Aligned_cols=126 Identities=14% Similarity=0.223 Sum_probs=101.0
Q ss_pred CCcccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccc
Q 012109 242 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 319 (471)
Q Consensus 242 ~g~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~ 319 (471)
++.+|.+ +++++.+++++.+|++.|.+++++++||+ +++| +++|+++..|+++++...... ........+
T Consensus 13 v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv---d~~~---~~~Givt~~dl~~~~~~~~~~--~~~~~~~~~ 84 (157)
T 2emq_A 13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVL---DTSY---KLHGLISMTMMMDAILGLERI--EFERLETMK 84 (157)
T ss_dssp STTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEE---CTTC---CEEEEEEHHHHHHHSBCSSSB--CGGGGGTCB
T ss_pred HHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEE---cCCC---CEEEEeeHHHHHHHHhccccc--chHHhcCCc
Confidence 4557876 89999999999999999999999999999 3467 899999999999876431100 000011223
Q ss_pred cccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 320 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 320 v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
+ .++|.++++++.+++++.+|+++|.++++ +||+|++|+++|+||.+|+++.+...
T Consensus 85 v------------~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 85 V------------EEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp G------------GGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHT
T ss_pred H------------HHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 3 34488899999999999999999999887 99999889999999999999877543
No 94
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.54 E-value=4.9e-14 Score=134.81 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=108.5
Q ss_pred HHHHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCCCeEEEeeehhhHHHHHh
Q 012109 229 KEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 303 (471)
Q Consensus 229 ~~~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~-----~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~ 303 (471)
......+.+....+|.+|.++++++.+++++.+|++.|.++ +++++||+ ++++ +++|+++.+|++...
T Consensus 124 ~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vv---d~~~---~lvGivt~~dll~~~- 196 (278)
T 2yvy_A 124 AEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV---DEKG---RLKGVLSLRDLIVAD- 196 (278)
T ss_dssp HHHHHHHHSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEE---CTTC---BEEEEEEHHHHHHSC-
T ss_pred HHHHHHHCCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEE---CCCC---CEEEEEEHHHHhcCC-
Confidence 34455566778888999999999999999999999999987 78999999 3457 899999999998420
Q ss_pred hhccccCCCCcccccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHH
Q 012109 304 RYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 383 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~ 383 (471)
...++. ++|.++++++.+++++.+++++|.+++.+.+||+|++|+++|+||..|++
T Consensus 197 ------------~~~~v~------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil 252 (278)
T 2yvy_A 197 ------------PRTRVA------------EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252 (278)
T ss_dssp ------------TTCBST------------TTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHH
T ss_pred ------------CCCcHH------------HHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHH
Confidence 122343 44888899999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 012109 384 ALAKD 388 (471)
Q Consensus 384 ~~~~~ 388 (471)
..+..
T Consensus 253 ~~i~~ 257 (278)
T 2yvy_A 253 DVLEA 257 (278)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 87654
No 95
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.54 E-value=1.7e-14 Score=125.49 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=100.7
Q ss_pred CcccC--CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccc
Q 012109 243 GKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 320 (471)
Q Consensus 243 g~im~--~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v 320 (471)
+.+|. ++++++.+++++.+|+++|.+++++++||+ +++| +++|++|..|+++++....... ......++
T Consensus 18 ~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vv---d~~~---~~~Giit~~dl~~~~~~~~~~~---~~~~~~~v 88 (156)
T 3ctu_A 18 ETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVV---TDEK---QFVGTIGLRDIMAYQMEHDLSQ---EIMADTDI 88 (156)
T ss_dssp GGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEE---CC-C---BEEEEEEHHHHHHHHHHHTCCH---HHHTTSBG
T ss_pred HHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEE---CCCC---EEEEEEcHHHHHHHHHhccccc---cccccCcH
Confidence 34677 789999999999999999999999999999 4567 8999999999998876431100 00113344
Q ss_pred ccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 321 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 321 ~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
.++ |.++++++.+++++.+|+++|.+++ ++||+|++|+++|+||.+|+++++...
T Consensus 89 ~~~------------m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~dil~~l~~~ 143 (156)
T 3ctu_A 89 VHM------------TKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp GGG------------CBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHHHHHHHHH
T ss_pred HHh------------ccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 444 8888999999999999999998876 799999899999999999999987553
No 96
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.53 E-value=1.1e-14 Score=123.04 Aligned_cols=116 Identities=17% Similarity=0.304 Sum_probs=97.6
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHH-HHhhhccccCCCCcccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAI 323 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~-~l~~~~~~~~~~~~~~~~~v~~~ 323 (471)
+|.++++++.+++++.+|++.|.+++.+.+||+ ++++ +++|+++..|+++ ++..... ....++.++
T Consensus 13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv---d~~~---~~~Givt~~dl~~~~~~~~~~-------~~~~~v~~~ 79 (133)
T 1y5h_A 13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPIC---GDDD---RLHGMLTDRDIVIKGLAAGLD-------PNTATAGEL 79 (133)
T ss_dssp HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEE---CGGG---BEEEEEEHHHHHHTTGGGTCC-------TTTSBHHHH
T ss_pred HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEE---CCCC---eEEEEEeHHHHHHHHHhcCCC-------ccccCHHHH
Confidence 577889999999999999999999999999999 3457 8999999999984 4432110 112344444
Q ss_pred cccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 324 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 324 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
|.++++++.+++++.+++++|.+++.+++||+|+ |+++|+||.+|+++.+
T Consensus 80 ------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l 129 (133)
T 1y5h_A 80 ------------ARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL 129 (133)
T ss_dssp ------------HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred ------------hcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 7778999999999999999999999999999997 9999999999999864
No 97
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.52 E-value=3e-14 Score=124.00 Aligned_cols=116 Identities=14% Similarity=0.231 Sum_probs=99.2
Q ss_pred CCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccc
Q 012109 248 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 327 (471)
Q Consensus 248 ~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~ 327 (471)
++++++.+++++.+|+++|.+++++.+||. ++| +++|+++..|+++++...... ....++.++
T Consensus 21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~----~~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v~~~---- 83 (157)
T 4fry_A 21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVV----DGD---DIAGIVTERDYARKVVLQERS------SKATRVEEI---- 83 (157)
T ss_dssp CCCCEEETTSBHHHHHHHHHHHTCSEEEEE----SSS---SEEEEEEHHHHHHHSGGGTCC------SSSCBHHHH----
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEe----eCC---EEEEEEEHHHHHHHHHhccCC------ccccCHHHH----
Confidence 667999999999999999999999999997 256 899999999999887543211 123445555
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 328 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 328 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+++.+...
T Consensus 84 --------m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 84 --------MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp --------SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred --------cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence 788899999999999999999999999999999 79999999999999987654
No 98
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.52 E-value=1.1e-13 Score=129.61 Aligned_cols=143 Identities=10% Similarity=0.092 Sum_probs=103.9
Q ss_pred CCCcccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCC---------
Q 012109 241 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS--------- 311 (471)
Q Consensus 241 ~~g~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~--------- 311 (471)
.++++|.++++++.+++++.+|.++|.+++++++||++. ++++ +++|+|+..||++++.........
T Consensus 14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~ 89 (250)
T 2d4z_A 14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEAD 89 (250)
T ss_dssp BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBC
T ss_pred ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccc
Confidence 346689999999999999999999999999999999942 2246 799999999999877543110000
Q ss_pred ------------------CCccccccc----------------c----------------------------------c-
Q 012109 312 ------------------SLPILKLPI----------------C----------------------------------A- 322 (471)
Q Consensus 312 ------------------~~~~~~~~v----------------~----------------------------------~- 322 (471)
...++.... . .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (250)
T 2d4z_A 90 EEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEE 169 (250)
T ss_dssp CC---------------------------------------------------------------------------CCS
T ss_pred ccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccccc
Confidence 000000000 0 0
Q ss_pred -ccc---cc-----ccccc--C-CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 323 -IPV---GT-----WVPKI--G-EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 323 -~~i---~~-----~~~~v--~-~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+.. .. ....+ . .+|.+.++++.+++++.++..+|...+++++||++ .|+++|+||++||++++..
T Consensus 170 ~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 170 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred ccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence 000 00 01112 2 25788899999999999999999999999999997 6999999999999998764
No 99
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.52 E-value=7.2e-14 Score=134.14 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=109.1
Q ss_pred HHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhh
Q 012109 231 GKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY 305 (471)
Q Consensus 231 ~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~-----~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~ 305 (471)
....+.+....+|.+|.++++++.+++++.+|++.|.++ +++++||+ +++| +++|++|.+|++...
T Consensus 128 i~~ll~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVv---d~~~---~lvGivt~~dll~~~--- 198 (286)
T 2oux_A 128 IKELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVV---DQEN---HLVGVISLRDLIVND--- 198 (286)
T ss_dssp HHHHTTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE---CTTC---BEEEEEEHHHHTTSC---
T ss_pred HHHHhcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEE---cCCC---eEEEEEEHHHHHcCC---
Confidence 334456677888899999999999999999999999987 88999999 3557 899999999987420
Q ss_pred ccccCCCCcccccccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 012109 306 FRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 385 (471)
Q Consensus 306 ~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~ 385 (471)
...++.++ |.++++++.+++++.+|+++|.+++++++||+|++|+++|+||..|++..
T Consensus 199 ----------~~~~v~~i------------m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~ 256 (286)
T 2oux_A 199 ----------DDTLIADI------------LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV 256 (286)
T ss_dssp ----------TTSBHHHH------------SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred ----------CCCcHHHH------------cCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence 12345555 88889999999999999999999999999999999999999999999987
Q ss_pred Hhcc
Q 012109 386 AKDK 389 (471)
Q Consensus 386 ~~~~ 389 (471)
+...
T Consensus 257 i~~e 260 (286)
T 2oux_A 257 IDDE 260 (286)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 100
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.52 E-value=3.1e-14 Score=126.66 Aligned_cols=139 Identities=19% Similarity=0.274 Sum_probs=99.1
Q ss_pred cccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccc--cCCCCcccccc
Q 012109 244 KAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH--CSSSLPILKLP 319 (471)
Q Consensus 244 ~im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~--~~~~~~~~~~~ 319 (471)
.+|.+ +++++.+++++.+|+++|.+++++.+||+ ++++ +++|+++..|++++....... ...........
T Consensus 8 dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVv---d~~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 81 (180)
T 3sl7_A 8 DFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVI---DDNW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST 81 (180)
T ss_dssp HHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEE---CTTC---BEEEEEEHHHHTCC-------------------C
T ss_pred HhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEE---CCCC---eEEEEEEHHHHHhhhhhccccCCcccccccccch
Confidence 35777 79999999999999999999999999999 4567 899999999998532111000 00000000000
Q ss_pred c------ccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 320 I------CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 320 v------~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
. ..+........++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 82 WKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp CCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred hhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence 0 00000001122344488888999999999999999999999999999999999999999999987654
No 101
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.51 E-value=6e-14 Score=122.77 Aligned_cols=124 Identities=13% Similarity=0.163 Sum_probs=98.0
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCC-CCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS-QDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~-~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
.+|.++++++.+++++.+|+++|.+++++++||++ + ++| +++|+++..|+++++...... .......++.+
T Consensus 17 dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd--~~~~~---~~~Givt~~dl~~~~~~~~~~---~~~~~~~~v~~ 88 (164)
T 2pfi_A 17 HFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVE--STESQ---ILVGIVQRAQLVQALQAEPPS---RAPGHQQCLQD 88 (164)
T ss_dssp HHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEES--CTTTC---BEEEEEEHHHHHHHHHC----------CCCCBHHH
T ss_pred HHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEe--cCCCC---EEEEEEEHHHHHHHHHhhccc---cCCcccchhhh
Confidence 36888999999999999999999999999999993 2 357 899999999999877532111 00011223333
Q ss_pred ccccccccccCCCCCCC------ceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 323 IPVGTWVPKIGEPNRRP------LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+ |..+ ++++.+++++.+|+++|.+++.+++||+| +|+++|+||.+||++++..
T Consensus 89 ~------------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 89 I------------LARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN 147 (164)
T ss_dssp H------------HHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred h------------hcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence 3 3333 78899999999999999999999999999 7999999999999987654
No 102
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=99.50 E-value=2.3e-14 Score=154.08 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=67.4
Q ss_pred CceeeEEEE--ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEEcCCceEEEEEEECCEEe--eCCCCC---ee
Q 012109 23 TVLIPMRFV--WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR--HDEHQP---FI 94 (471)
Q Consensus 23 ~~~~~~~f~--~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~--~d~~~~---~~ 94 (471)
+..++|+|+ |+.+|++|+|+||||+|++. .+|.+. +|.|++++.||||+|+|||+|||+|+ +||++| ++
T Consensus 15 ~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~---~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y~ 91 (696)
T 4aee_A 15 KGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKI---EEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKKCV 91 (696)
T ss_dssp EEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEE---TTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEEEE
T ss_pred CCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEec---CCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCccccc
Confidence 345566666 55589999999999999774 577663 89999999999999999999999999 778887 37
Q ss_pred eCCCCCeeeEE
Q 012109 95 SSEYGIVNTVL 105 (471)
Q Consensus 95 ~~~~g~~nn~~ 105 (471)
.|++|+.|++.
T Consensus 92 ~~~~g~~n~~~ 102 (696)
T 4aee_A 92 HTSFFPEYKKC 102 (696)
T ss_dssp ECSSCTTSEEE
T ss_pred ccCCcccccee
Confidence 89999999985
No 103
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.50 E-value=4e-14 Score=123.50 Aligned_cols=122 Identities=8% Similarity=0.144 Sum_probs=98.9
Q ss_pred ccCC--CceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 245 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 245 im~~--~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
+|.+ +++++.+++++.+|+++|.+++++.+||+ +++| +++|+++..|+++++...... ........++.+
T Consensus 19 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVv---d~~~---~lvGivt~~dl~~~~~~~~~~--~~~~~~~~~v~~ 90 (159)
T 1yav_A 19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVL---DPSY---RLHGLIGTNMIMNSIFGLERI--EFEKLDQITVEE 90 (159)
T ss_dssp HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEE---CTTC---BEEEEEEHHHHHHHHBCSSSB--CGGGTTTSBHHH
T ss_pred HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEE---CCCC---CEEEEeEHHHHHHHhhhhccc--chhhhccCCHHH
Confidence 5766 78999999999999999999999999999 4567 899999999999876532100 000011234444
Q ss_pred ccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 323 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+ |.++++++.+++++.+|+++|.++++ +||+|++|+++|+||++|+++++..
T Consensus 91 ~------------m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~ 142 (159)
T 1yav_A 91 V------------MLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNK 142 (159)
T ss_dssp H------------SBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred h------------cCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHH
Confidence 4 78889999999999999999998876 9999988999999999999987654
No 104
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.49 E-value=6.6e-14 Score=145.83 Aligned_cols=121 Identities=19% Similarity=0.262 Sum_probs=102.6
Q ss_pred ccCCCCCCCceEecCC-CcHHHHHHHHHhcCCCEEEEEc-CCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcC
Q 012109 331 KIGEPNRRPLAMLRPS-ASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 408 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~ 408 (471)
.++++|.++++++.++ +++.+|+++|.+++++++||+| ++++++|+||.+||++.+..... ..+.++.++|
T Consensus 385 ~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~----~~~~~V~~im--- 457 (527)
T 3pc3_A 385 AIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR----QQSDPAIKAL--- 457 (527)
T ss_dssp BGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC----CTTSBGGGGE---
T ss_pred cHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccC----cCCCcHHHHh---
Confidence 4667799999999999 9999999999999999999999 78999999999999987654311 1235666655
Q ss_pred CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCC---CCeEEEEEehHHHHHHhh
Q 012109 409 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG---SKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~---~~~liGiIs~~Dil~~l~ 470 (471)
.++++++.+++++.+|+++|.++++ +||||++ .|+++||||+.||++++.
T Consensus 458 ----------~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~ 510 (527)
T 3pc3_A 458 ----------NKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIA 510 (527)
T ss_dssp ----------ETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHH
T ss_pred ----------cCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHH
Confidence 6789999999999999999987775 7999931 389999999999999985
No 105
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.49 E-value=2.5e-13 Score=139.20 Aligned_cols=164 Identities=15% Similarity=0.206 Sum_probs=124.2
Q ss_pred eecchHHHHHHHHHhccCCCCCChhhHhhhcHHHHHHHHhhhccccCCCCcccCCCceecCCCCCHHHHHHHHHhC----
Q 012109 194 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN---- 269 (471)
Q Consensus 194 Gilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~im~~~~v~v~~~~sl~~a~~~m~~~---- 269 (471)
.-++..|+.+++..+.........+.+......+.......+.+++..++.+|.++++++.+++++.+|++.|.++
T Consensus 109 ~~l~~dd~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~ 188 (473)
T 2zy9_A 109 EELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDA 188 (473)
T ss_dssp HHSCHHHHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGC
T ss_pred HhCCHHHHHHHHHhCCHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCc
Confidence 3455666666665543210001112222233344455556667888899999999999999999999999999986
Q ss_pred -CccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccccccccccCCCCCCCceEecCCCc
Q 012109 270 -EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 348 (471)
Q Consensus 270 -~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~ 348 (471)
+++++||+ ++++ +++|+++.+|++.. ....+++++ |.+++++++++++
T Consensus 189 ~~~~~ipVv---d~~~---~lvGiVt~~Dll~~-------------~~~~~v~di------------m~~~~~~v~~~~~ 237 (473)
T 2zy9_A 189 ETIYYIYVV---DEKG---RLKGVLSLRDLIVA-------------DPRTRVAEI------------MNPKVVYVRTDTD 237 (473)
T ss_dssp SEEEEEEEE---CTTS---BEEEEEEHHHHHHS-------------CTTSBGGGT------------SBSSCCCEESSSB
T ss_pred CceeEEEEE---CCCC---cEEEEEEHHHHhcC-------------CCCCcHHHH------------hCCCCeEEeCCCc
Confidence 58999999 3456 89999999999852 012344444 8888999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 349 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 349 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
+.++++.|.+++.+.+||+|++|+++|+||.+|+++.+..
T Consensus 238 l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 238 QEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence 9999999999999999999999999999999999987644
No 106
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.48 E-value=2.2e-13 Score=121.72 Aligned_cols=140 Identities=10% Similarity=0.106 Sum_probs=102.1
Q ss_pred ccCCC----ceec--CCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCC----c
Q 012109 245 AFPRP----LVYA--GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL----P 314 (471)
Q Consensus 245 im~~~----~v~v--~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~----~ 314 (471)
+|.+. ++++ .+++++.+|+++|.+++++.+||++. +++| +++|+++..|+++++........... .
T Consensus 16 im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~ 91 (185)
T 2j9l_A 16 VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSII 91 (185)
T ss_dssp HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred HhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence 57665 7888 99999999999999999999999931 2456 89999999999988764311100000 0
Q ss_pred cccccccccc-ccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 315 ILKLPICAIP-VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 315 ~~~~~v~~~~-i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
.+.....+.. .......++++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~ 166 (185)
T 2j9l_A 92 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM 166 (185)
T ss_dssp ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred ecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHh
Confidence 0000000000 00111234555878899999999999999999999999999999 89999999999999977543
No 107
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.44 E-value=2.7e-13 Score=138.98 Aligned_cols=116 Identities=17% Similarity=0.281 Sum_probs=101.3
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHhc-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHH
Q 012109 331 KIGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 405 (471)
Q Consensus 331 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~ 405 (471)
.++++|.++++++.+++++.++++.|.++ +++++||+|++++++|+||.+|++... .+.++.++|
T Consensus 156 ~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~----------~~~~v~dim 225 (473)
T 2zy9_A 156 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAEIM 225 (473)
T ss_dssp BSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC----------TTSBGGGTS
T ss_pred CHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC----------CCCcHHHHh
Confidence 34556999999999999999999999986 578999999889999999999998631 134666654
Q ss_pred hcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 406 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.++++++++++++.+|++.|.+++.+.+|||| ++|+++|+||..|+++.+.
T Consensus 226 -------------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~ 276 (473)
T 2zy9_A 226 -------------NPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE 276 (473)
T ss_dssp -------------BSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred -------------CCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHH
Confidence 66899999999999999999999999999999 5899999999999998764
No 108
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.41 E-value=6.9e-14 Score=148.51 Aligned_cols=137 Identities=14% Similarity=0.050 Sum_probs=101.6
Q ss_pred ccCCCCC--CCceEecCCCcHHHHHHHHH-hcCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc-Cc---------cc
Q 012109 331 KIGEPNR--RPLAMLRPSASLSAALNLLV-QAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-IN---------LS 397 (471)
Q Consensus 331 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~-l~---------~~ 397 (471)
.++++|. ++++++.+++++.++.+.|. +++++++||+|++++++|+||++|+.+......... .. ..
T Consensus 454 ~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~ 533 (632)
T 3org_A 454 TAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLD 533 (632)
T ss_dssp BHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC------------------
T ss_pred cHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceeccC
Confidence 4556688 88999999999999999999 799999999999899999999999998654321000 00 00
Q ss_pred c----cCHHHHHhcC----------------CCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEE
Q 012109 398 E----MTIHQALQLG----------------QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 457 (471)
Q Consensus 398 ~----~~v~~~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~li 457 (471)
. ..+....... ...+...++|+++++++++++++.+|+++|.+++++++||+| +|+++
T Consensus 534 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~lv 611 (632)
T 3org_A 534 AADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKLV 611 (632)
T ss_dssp -------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEEE
T ss_pred HHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEEE
Confidence 0 0011110000 001124568999999999999999999999999999999996 69999
Q ss_pred EEEehHHHHHHh
Q 012109 458 GIVSLSDIFKFL 469 (471)
Q Consensus 458 GiIs~~Dil~~l 469 (471)
|+||++||++++
T Consensus 612 GIVT~~Dll~~~ 623 (632)
T 3org_A 612 GIVEREDVAYGY 623 (632)
T ss_dssp EEEEGGGTEECC
T ss_pred EEEehhhHHHHH
Confidence 999999998765
No 109
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.40 E-value=8.9e-13 Score=135.92 Aligned_cols=113 Identities=18% Similarity=0.302 Sum_probs=100.4
Q ss_pred CCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcC--CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCC
Q 012109 335 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 335 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
.|..+++++.+++++.+++++|.+++++++||+|+ +++++|+||.+|+... . ..+.++.++|
T Consensus 118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---~------~~~~~V~~vM------- 181 (511)
T 3usb_A 118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---Q------DYSIKISDVM------- 181 (511)
T ss_dssp CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---C------CSSSBHHHHC-------
T ss_pred ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---c------cCCCcHHHhc-------
Confidence 36778899999999999999999999999999998 8999999999999641 1 1246788876
Q ss_pred CcccccCC-cceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 413 SPYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 413 ~~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
++ +++++++++++.+++++|.+++++.+|||| ++|+++|+||..||++.+.
T Consensus 182 ------~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD-e~g~l~GiIT~~Dil~~~~ 233 (511)
T 3usb_A 182 ------TKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD-NNGVLQGLITIKDIEKVIE 233 (511)
T ss_dssp ------CCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred ------ccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe-CCCCEeeeccHHHHHHhhh
Confidence 44 789999999999999999999999999999 6899999999999998763
No 110
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.34 E-value=1.4e-11 Score=126.89 Aligned_cols=158 Identities=14% Similarity=0.187 Sum_probs=117.8
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
.|..+++++.+++++.+|+++|.+++++++||++.. .++ +++|+|+.+|++. . . ....++.++
T Consensus 118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~---~---~------~~~~~V~~v- 180 (511)
T 3usb_A 118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF---I---Q------DYSIKISDV- 180 (511)
T ss_dssp CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT---C---C------CSSSBHHHH-
T ss_pred ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh---h---c------cCCCcHHHh-
Confidence 578889999999999999999999999999999310 156 8999999999863 0 0 123455555
Q ss_pred ccccccccCCCCCC-CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHH
Q 012109 325 VGTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQ 403 (471)
Q Consensus 325 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~ 403 (471)
|.+ +++++.+++++.+++++|.+++++.+||+|++|+++|+||.+|+++...... .+.+
T Consensus 181 -----------M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~---------a~~D 240 (511)
T 3usb_A 181 -----------MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPN---------SAKD 240 (511)
T ss_dssp -----------CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTT---------CCBC
T ss_pred -----------cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhccc---------chhh
Confidence 777 8999999999999999999999999999999999999999999999765421 1111
Q ss_pred HHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEe
Q 012109 404 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE 450 (471)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd 450 (471)
.... ..-...+.......+.++.|.+.++..+.|-.
T Consensus 241 ~~~r-----------l~V~aavg~~~d~~era~aLveaGvd~I~Id~ 276 (511)
T 3usb_A 241 KQGR-----------LLVGAAVGVTADAMTRIDALVKASVDAIVLDT 276 (511)
T ss_dssp TTSC-----------BCCEEEECSSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred hccc-----------eeeeeeeeeccchHHHHHHHHhhccceEEecc
Confidence 1100 00122333344445666777888888776654
No 111
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.33 E-value=3.5e-12 Score=132.83 Aligned_cols=124 Identities=14% Similarity=0.144 Sum_probs=103.3
Q ss_pred CCCCcccCCCceecCCC-CCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccc
Q 012109 240 DSHGKAFPRPLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 318 (471)
Q Consensus 240 ~~~g~im~~~~v~v~~~-~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~ 318 (471)
..++++|.++++++.++ +++.+|+++|.+++++++||++ ++++ +++|+||.+||++.+..... ....
T Consensus 384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd--~~~g---~lvGiVt~~Dll~~l~~~~~-------~~~~ 451 (527)
T 3pc3_A 384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD--QDDG---SVLGVVGQETLITQIVSMNR-------QQSD 451 (527)
T ss_dssp SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEEC--TTTC---CEEEEEEHHHHHHHHHHHCC-------CTTS
T ss_pred CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEE--CCCC---EEEEEEEHHHHHHHHHhccC-------cCCC
Confidence 34567899999999999 9999999999999999999992 2467 89999999999988765311 1234
Q ss_pred ccccccccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC----CcEEEEEeHHHHHHHHhcc
Q 012109 319 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN----DSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 319 ~v~~~~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----g~lvGivt~~dl~~~~~~~ 389 (471)
++.++ |.++++++.+++++.+++++|.+++ .+||+|++ |+++|+||+.||++++...
T Consensus 452 ~V~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~ 512 (527)
T 3pc3_A 452 PAIKA------------LNKRVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVELKALATKLDVTTFIAAG 512 (527)
T ss_dssp BGGGG------------EETTCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred cHHHH------------hcCCCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence 55555 8889999999999999999997666 47999974 8999999999999987654
No 112
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.32 E-value=4.9e-12 Score=130.71 Aligned_cols=114 Identities=21% Similarity=0.317 Sum_probs=99.5
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEc--CCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 411 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 411 (471)
++|.++++++.+++++.+++++|.+++++++||+| ++++++|+||.+|++.... .+.++.+
T Consensus 94 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~~---------~~~~v~~-------- 156 (491)
T 1zfj_A 94 NGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD---------YNAPISE-------- 156 (491)
T ss_dssp TTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC---------SSSBTTT--------
T ss_pred hcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhcc---------CCCcHHH--------
Confidence 34788899999999999999999999999999999 7899999999999986310 1244554
Q ss_pred CCcccccCC-cceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 412 YSPYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 412 ~~~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
+|.+ +++++++++++.++++.|.+++++++|||| ++|+++|+||..||++.+.
T Consensus 157 -----im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 157 -----HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE 210 (491)
T ss_dssp -----SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHHHHHHh
Confidence 4466 789999999999999999999999999999 5899999999999999864
No 113
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.30 E-value=4e-13 Score=138.00 Aligned_cols=114 Identities=16% Similarity=0.278 Sum_probs=85.6
Q ss_pred CCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCc
Q 012109 335 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSP 414 (471)
Q Consensus 335 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~ 414 (471)
+|..+++++.+++++.+++++|.+++++++||+|++++++|+||.+|+... . ..+.++.++|..
T Consensus 94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~---~------~~~~~v~diM~p------- 157 (496)
T 4fxs_A 94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV---T------DLTKSVAAVMTP------- 157 (496)
T ss_dssp --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC---C------CTTSBGGGTSEE-------
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc---c------cCCCcHHHHhcC-------
Confidence 377789999999999999999999999999999988999999999999621 0 123566766521
Q ss_pred ccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 415 YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 415 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
..+++++++++++.+|+++|.+++++.+|||| ++|+++|+||+.||++..
T Consensus 158 ----~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 158 ----KERLATVKEGATGAEVQEKMHKARVEKILVVN-DEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp ----GGGCCEEECC----CGGGTCC---CCCEEEEC-TTSBCCEEECCC-----C
T ss_pred ----CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEeehHhHHHHhh
Confidence 11589999999999999999999999999999 689999999999999863
No 114
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.28 E-value=3.7e-13 Score=138.96 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC---CcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCC
Q 012109 336 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 336 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
|.++++++.+++++.+++++|.+++++++||+|++ ++++|+||.+|++.. .. ..+.++.++|
T Consensus 103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~~-------~~~~~V~diM------- 167 (503)
T 1me8_A 103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-LT-------QTETKVSDMM------- 167 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-hc-------cccCcHHHHh-------
Confidence 66788999999999999999999999999999987 899999999999864 11 1235677766
Q ss_pred CcccccCCc--ceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 413 SPYELRSQR--CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 413 ~~~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
.++ ++++++++++.+|+++|.+++++.+|||| ++|+++|+||.+||++.+.
T Consensus 168 ------~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 168 ------TPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID-DDQHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp ------------------------------------------------------------
T ss_pred ------CCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEecHHHHhhh
Confidence 445 99999999999999999999999999999 5899999999999998764
No 115
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.27 E-value=4.2e-13 Score=138.72 Aligned_cols=114 Identities=17% Similarity=0.353 Sum_probs=4.8
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~ 413 (471)
++|.++++++.+++++.+++++|.+++++.+||+|++++++|+||.+|+..... .+.++.++|
T Consensus 99 ~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~---------~~~~v~~im-------- 161 (494)
T 1vrd_A 99 NGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKN---------LSKKIKDLM-------- 161 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcC---------CCCcHHHHh--------
Confidence 347888999999999999999999999999999998899999999999986311 135666665
Q ss_pred cccccCC--cceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 414 PYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 414 ~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
++ +++++.+++++.+++++|.+++++.+|||| ++|+++|+||..||++.+.
T Consensus 162 -----~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 162 -----TPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS-KDNKLVGLITIKDIMSVIE 214 (494)
T ss_dssp -----------------------------------------------------CHHHHT
T ss_pred -----CCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHhhhc
Confidence 54 799999999999999999999999999999 5899999999999999864
No 116
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.25 E-value=5.9e-13 Score=136.67 Aligned_cols=113 Identities=17% Similarity=0.276 Sum_probs=0.4
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 413 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~ 413 (471)
++|..+++++.+++++.+++++|.+++++++||+| +++++|+||.+|+..... .+.++.++|..
T Consensus 92 ~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~vMtp------ 155 (490)
T 4avf_A 92 TAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAAIMTP------ 155 (490)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHHHhcc------
Confidence 33777889999999999999999999999999999 899999999999964211 13567776621
Q ss_pred cccccCC-cceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 414 PYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 414 ~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
+ +++++++++++.+|+++|.+++++.+|||| ++|+++|+||+.||+++.
T Consensus 156 ------~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~ 205 (490)
T 4avf_A 156 ------KDKLVTAREGTPLEEMKAKLYENRIEKMLVVD-ENFYLRGLVTFRDIEKAK 205 (490)
T ss_dssp ---------------------------------------------------------
T ss_pred ------CCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHhhhhc
Confidence 2 689999999999999999999999999999 689999999999999864
No 117
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.21 E-value=1e-12 Score=135.66 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=18.5
Q ss_pred cCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCC---CCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccc
Q 012109 246 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQD---GSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 322 (471)
Q Consensus 246 m~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~---g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~ 322 (471)
|.++++++.+++|+.+|+++|.+++++++||++ ++ + +++|+|+.+|++.. . . ....++.+
T Consensus 103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd---~~~~~g---~lvGiVt~~Dl~~~--~---~------~~~~~V~d 165 (503)
T 1me8_A 103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTD---DGTPHG---VLLGLVTQRDYPID--L---T------QTETKVSD 165 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCeEECCCCcHHHHHHHHHHcCceEEEEEE---CCCcCC---eEEEEEEHHHHHhh--h---c------cccCcHHH
Confidence 778999999999999999999999999999994 33 6 89999999999853 0 0 11234444
Q ss_pred ccccccccccCCCCCCC--ceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccC
Q 012109 323 IPVGTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 400 (471)
Q Consensus 323 ~~i~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~ 400 (471)
+ |.++ ++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.......
T Consensus 166 i------------M~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~--------- 224 (503)
T 1me8_A 166 M------------MTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNE--------- 224 (503)
T ss_dssp --------------------------------------------------------------------CCC---------
T ss_pred H------------hCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccc---------
Confidence 4 8877 9999999999999999999999999999999999999999999987643211
Q ss_pred HHHHHhcCCCCCCcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEE
Q 012109 401 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 448 (471)
Q Consensus 401 v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V 448 (471)
..+.. ..++ ....+.. ....+.++.|.+.+++.+.|
T Consensus 225 ~~d~~---------~~l~--v~a~v~~-~~~~e~~~~l~e~gv~~l~V 260 (503)
T 1me8_A 225 LVDSQ---------KRYL--VGAGINT-RDFRERVPALVEAGADVLCI 260 (503)
T ss_dssp CBCTT---------SCBC--CEEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred hhccc---------cccc--cccccCc-hhHHHHHHHHHhhhccceEE
Confidence 11100 0011 1123344 56667788888889886554
No 118
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.21 E-value=1.1e-11 Score=131.64 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=100.2
Q ss_pred CCcccC--CCceecCCCCCHHHHHHHHH-hCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCC-----
Q 012109 242 HGKAFP--RPLVYAGPNDNLKDVARKIL-HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL----- 313 (471)
Q Consensus 242 ~g~im~--~~~v~v~~~~sl~~a~~~m~-~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~----- 313 (471)
++++|. ++++++++++++.++.+.|. +++++++||+ ++++ +++|+++.+|+++.+...........
T Consensus 455 V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVv---d~~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~ 528 (632)
T 3org_A 455 AREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVI---DANG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRT 528 (632)
T ss_dssp HHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBB---CTTC---BBCCEESHHHHTTTTTTC-------------
T ss_pred HHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEE---ecCC---eEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence 355788 89999999999999999999 7999999999 3467 89999999999987654311100000
Q ss_pred ------ccccccccccc-----------------ccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCC
Q 012109 314 ------PILKLPICAIP-----------------VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 370 (471)
Q Consensus 314 ------~~~~~~v~~~~-----------------i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 370 (471)
..+.+.+..+. +....+.++++|+++++++++++++.+++++|.+++++++||+ ++
T Consensus 529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~ 607 (632)
T 3org_A 529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER 607 (632)
T ss_dssp ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence 00000011100 0011123678899999999999999999999999999999999 68
Q ss_pred CcEEEEEeHHHHHHHH
Q 012109 371 DSLLDIYCRSDITALA 386 (471)
Q Consensus 371 g~lvGivt~~dl~~~~ 386 (471)
|+++|+||++|+++..
T Consensus 608 G~lvGIVT~~Dll~~~ 623 (632)
T 3org_A 608 GKLVGIVEREDVAYGY 623 (632)
T ss_dssp TEEEEEEEGGGTEECC
T ss_pred CEEEEEEehhhHHHHH
Confidence 9999999999998754
No 119
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.17 E-value=2.6e-12 Score=128.95 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcC---CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCC
Q 012109 336 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 412 (471)
Q Consensus 336 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 412 (471)
|..+++++.++.++.+++++|.+++++.+||+++ +++++|+||.+|+... +. +.+|.++|
T Consensus 144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d~--------~~~V~evM------- 206 (556)
T 4af0_A 144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--DA--------ETPIKSVM------- 206 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--cc--------ceEhhhhc-------
Confidence 4557899999999999999999999999999986 5799999999998542 11 25677766
Q ss_pred CcccccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 413 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
++++++++++.++.+|.++|.++++..+|||| ++++++|+||+.|+.+.
T Consensus 207 ------T~~lvt~~~~~~leeA~~iL~~~kieklpVVd-~~g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 207 ------TTEVVTGSSPITLEKANSLLRETKKGKLPIVD-SNGHLVSLVARSDLLKN 255 (556)
T ss_dssp --------------------------------------------------------
T ss_pred ------ccceEEecCCCCHHHHHHHHHHccccceeEEc-cCCcEEEEEEechhhhh
Confidence 66899999999999999999999999999999 58999999999999875
No 120
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.17 E-value=3.1e-10 Score=117.13 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=99.0
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
+|.++++++.+++++.+|+++|.+++++++||++. .+++ +++|+++.+|++... ....++.
T Consensus 95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~~------------~~~~~v~--- 155 (491)
T 1zfj_A 95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFIS------------DYNAPIS--- 155 (491)
T ss_dssp TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCS------------CSSSBTT---
T ss_pred cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhhc------------cCCCcHH---
Confidence 68889999999999999999999999999999931 0456 899999999997420 0123333
Q ss_pred ccccccccCCCCCC-CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 325 VGTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 325 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
++|.+ +++++.+++++.+++++|.+++++.+||+|++|+++|++|..|+++....
T Consensus 156 ---------~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 156 ---------EHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp ---------TSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred ---------HHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 44887 88999999999999999999999999999999999999999999997763
No 121
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.10 E-value=3.6e-11 Score=123.50 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=83.6
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
+|..+++++.+++++.+|+++|.+++++++||++ +++ +++|+||.+|++. .. ....++.++
T Consensus 94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd---~~~---~lvGiVt~rDL~~------~~------~~~~~v~di- 154 (496)
T 4fxs_A 94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVT---ENN---ELVGIITGRDVRF------VT------DLTKSVAAV- 154 (496)
T ss_dssp --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEEC---SSS---BEEEEEEHHHHTT------CC------CTTSBGGGT-
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEc---cCC---EEEEEEEHHHHhh------cc------cCCCcHHHH-
Confidence 5888999999999999999999999999999993 456 8999999999861 00 113344444
Q ss_pred ccccccccCCCCC-C-CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 325 VGTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 325 i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
|. + +++++.+++++.+++++|.+++++.+||+|++|+++|+||++|+++..
T Consensus 155 -----------M~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 155 -----------MTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp -----------SEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred -----------hcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence 77 3 589999999999999999999999999999999999999999999864
No 122
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.10 E-value=8.1e-12 Score=125.43 Aligned_cols=113 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred cCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccccc
Q 012109 246 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 325 (471)
Q Consensus 246 m~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~i 325 (471)
|..+++++.|+.|+.+|+++|.+++++.+||++....++ +++||+|.+|+. +. + ...++.++
T Consensus 144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f~-d-----------~~~~V~ev-- 205 (556)
T 4af0_A 144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-FQ-D-----------AETPIKSV-- 205 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-cc-c-----------cceEhhhh--
Confidence 567789999999999999999999999999995433467 899999999974 21 1 12344444
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 326 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 326 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
|+++++++....++.+|.++|.++++..+||||++++++|+||++|+.+..
T Consensus 206 ----------MT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 206 ----------MTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp -------------------------------------------------------------
T ss_pred ----------cccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence 888999999999999999999999999999999999999999999998754
No 123
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=99.08 E-value=2e-10 Score=122.63 Aligned_cols=78 Identities=24% Similarity=0.427 Sum_probs=63.6
Q ss_pred eeeEEEEecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCe----eeCCCC
Q 012109 25 LIPMRFVWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPF----ISSEYG 99 (471)
Q Consensus 25 ~~~~~f~~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~----~~~~~g 99 (471)
..-|.|.|+.+|+.++|+|+||+|.+. .+|.+ .++.|.+++.||||.|+|||+|||+|+.||.+|. ..++.+
T Consensus 16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~---~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~~~~~~~~~~ 92 (645)
T 4aef_A 16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ---EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPERRVYTRKGYK 92 (645)
T ss_dssp EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEE---CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCCEEEEEEGGGT
T ss_pred EEEEEEecCCCCeEEEEEEcCCCCCCCcccceE---cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCCcccccccCcC
Confidence 456888999999999999999999984 35644 4789999999999999999999999999999984 334444
Q ss_pred CeeeEE
Q 012109 100 IVNTVL 105 (471)
Q Consensus 100 ~~nn~~ 105 (471)
..+.+.
T Consensus 93 ~~~~~~ 98 (645)
T 4aef_A 93 FHREVN 98 (645)
T ss_dssp EEEEEE
T ss_pred ccccee
Confidence 444443
No 124
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.08 E-value=1.4e-12 Score=135.45 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=66.6
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcC---CCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCC
Q 012109 334 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 410 (471)
Q Consensus 334 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 410 (471)
++|.++++++.+++++.+++++|.+++++.+||+|+ +++++|+||.+|+...... ....++.++|
T Consensus 112 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~vm----- 179 (514)
T 1jcn_A 112 QGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSEVM----- 179 (514)
T ss_dssp TTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC---------------------------
T ss_pred hccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHHHh-----
Confidence 447778899999999999999999999999999997 5899999999998764210 1134566655
Q ss_pred CCCcccccCC--cceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 411 SYSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 411 ~~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
.+ +++++.+++++.+|+++|.+++++.+|||| ++|+++|+||++||++++
T Consensus 180 --------~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 180 --------TPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN-DCDELVAIIARTDLKKNR 231 (514)
T ss_dssp ---------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES-SSSCCC----CCCCSSCC
T ss_pred --------CCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC-CCCeEEEEEEHHHHHHHh
Confidence 55 799999999999999999999999999999 589999999999998754
No 125
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.05 E-value=5e-11 Score=122.30 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=0.4
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccccc
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 323 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~ 323 (471)
.+|..+++++.+++++.+|+++|.+++++++||+ + ++ +++|++|.+|+.... ....++.++
T Consensus 92 ~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVv---d-~g---~lvGIVt~rDl~~~~------------~~~~~V~~v 152 (490)
T 4avf_A 92 TAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVV---E-QG---ELVGIVTGRDLRVKP------------NAGDTVAAI 152 (490)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEE---E-CC---EEEEEEEhHHhhhcc------------ccCCcHHHH
Confidence 3678889999999999999999999999999999 3 56 899999999985211 112344444
Q ss_pred cccccccccCCCCC-C-CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 012109 324 PVGTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 387 (471)
Q Consensus 324 ~i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~ 387 (471)
|. + +++++.+++++.+++++|.+++++.+||+|++|+++|+||++|+++...
T Consensus 153 ------------Mtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 153 ------------MTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp ------------------------------------------------------------------
T ss_pred ------------hccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence 77 4 6999999999999999999999999999999999999999999998753
No 126
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.05 E-value=2e-11 Score=125.61 Aligned_cols=108 Identities=17% Similarity=0.351 Sum_probs=0.0
Q ss_pred CCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHHhcCCCCCCcc
Q 012109 336 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 415 (471)
Q Consensus 336 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~ 415 (471)
|..+++++.+++++.+++++|.+++++++||+|+ ++++|+|+.+|++. . ...++.++|
T Consensus 99 m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~---~--------~~~~v~~im---------- 156 (486)
T 2cu0_A 99 IVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA---R--------EGKLVKELM---------- 156 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc---C--------CCCCHHHHc----------
Confidence 6678899999999999999999999999999997 99999999999975 1 124666665
Q ss_pred cccCCcceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 012109 416 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 469 (471)
Q Consensus 416 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l 469 (471)
.++++++++++++.++++.|.+++++.+|||| ++|+++|+||.+||++.+
T Consensus 157 ---~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd-e~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 157 ---TKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDLVARK 206 (486)
T ss_dssp ------------------------------------------------------
T ss_pred ---cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe-cCCeEEEEEEHHHHHHhh
Confidence 55789999999999999999999999999999 589999999999999865
No 127
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.04 E-value=5.4e-11 Score=122.91 Aligned_cols=114 Identities=17% Similarity=0.301 Sum_probs=5.1
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
+|.++++++.+++++.+|+++|.+++++.+||+ ++++ +++|+||.+|+++.. ....++.++
T Consensus 100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVv---d~~~---~lvGivt~~Dl~~~~------------~~~~~v~~i- 160 (494)
T 1vrd_A 100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVV---DEEG---RLVGLLTNRDVRFEK------------NLSKKIKDL- 160 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccCCeEECCCCCHHHHHHHHHHcCceEEEEE---cCCC---EEEEEEEHHHHHhhc------------CCCCcHHHH-
Confidence 688899999999999999999999999999999 3456 899999999987420 012334444
Q ss_pred ccccccccCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 012109 325 VGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 388 (471)
Q Consensus 325 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~ 388 (471)
|.+ +++++.+++++.+++++|.+++++.+||+|++|+++|+||..|+++....
T Consensus 161 -----------m~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 161 -----------MTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp -----------------------------------------------------------CHHHHTC
T ss_pred -----------hCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence 887 89999999999999999999999999999999999999999999987643
No 128
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.87 E-value=4.1e-10 Score=115.86 Aligned_cols=110 Identities=15% Similarity=0.309 Sum_probs=0.4
Q ss_pred ccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhhhccccCCCCccccccccccc
Q 012109 245 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 324 (471)
Q Consensus 245 im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~~~~ 324 (471)
.|..+++++.+++++.+++++|.+++++++||++ + + +++|+++.+|++. . ...++.++
T Consensus 98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd---~-~---~lvGivt~~Dl~~---~-----------~~~~v~~i- 155 (486)
T 2cu0_A 98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVE---D-E---KVVGIITKKDIAA---R-----------EGKLVKEL- 155 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHhcc---C-----------CCCCHHHH-
Confidence 5778899999999999999999999999999993 3 6 8999999999874 1 02234444
Q ss_pred ccccccccCCCCCCCceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 012109 325 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 387 (471)
Q Consensus 325 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~ 387 (471)
|.++++++.+++++.+++++|.+++++.+||+|++|+++|+||.+||++...
T Consensus 156 -----------m~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 156 -----------MTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp --------------------------------------------------------------C
T ss_pred -----------ccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 7778899999999999999999999999999999999999999999998753
No 129
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.83 E-value=5.3e-09 Score=77.30 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=49.7
Q ss_pred ceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHH
Q 012109 340 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 405 (471)
Q Consensus 340 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~ 405 (471)
++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+.... .+..+.+++++|
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~---~~~~~~~V~~iM 63 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKG---KNPKEVKVEEIM 63 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTT---CCGGGCBGGGTC
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcC---CCcccCCHHHhc
Confidence 67899999999999999999999999998 689999999999986543221 123345677655
No 130
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.81 E-value=1.8e-10 Score=119.41 Aligned_cols=116 Identities=20% Similarity=0.270 Sum_probs=67.2
Q ss_pred cccCCCceecCCCCCHHHHHHHHHhCCccEEEEEecCCC--CCCCCeEEEeeehhhHHHHHhhhccccCCCCcccccccc
Q 012109 244 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 321 (471)
Q Consensus 244 ~im~~~~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~--~g~~~~l~Givt~~dil~~l~~~~~~~~~~~~~~~~~v~ 321 (471)
.+|.++++++.+++++.+|+++|.+++++.+||+| +. ++ +++|+||.+|+..... .....++.
T Consensus 112 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~~~v~ 176 (514)
T 1jcn_A 112 QGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITE--TGTMGS---KLVGIVTSRDIDFLAE----------KDHTTLLS 176 (514)
T ss_dssp TTSCSSCCCCCC-----------------CEESCC-------------CCEECTTTTC----------------------
T ss_pred hccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEe--CCCcCC---EEEEEEEHHHHHhhhh----------ccCCCCHH
Confidence 36888899999999999999999999999999994 22 46 8999999999875310 01123343
Q ss_pred cccccccccccCCCCCC--CceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 012109 322 AIPVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 386 (471)
Q Consensus 322 ~~~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~ 386 (471)
+ +|.+ +++++.+++++.+++++|.+++++.+||+|++|+++|+||++|+++..
T Consensus 177 ~------------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 177 E------------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp ----------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred H------------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 3 3877 899999999999999999999999999999999999999999998754
No 131
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.79 E-value=1.1e-08 Score=75.57 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=43.1
Q ss_pred ceecCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCCCeEEEeeehhhHHHHHhh
Q 012109 250 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR 304 (471)
Q Consensus 250 ~v~v~~~~sl~~a~~~m~~~~~~~lpVvd~d~~~g~~~~l~Givt~~dil~~l~~ 304 (471)
++++.|++|+.+|+++|.+++++++||++ +| +++||+|.+|+++.+..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d----~~---~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME----GD---EILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE----TT---EEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHHHh
Confidence 68999999999999999999999999993 46 89999999999876543
No 132
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.53 E-value=1.3e-07 Score=69.54 Aligned_cols=62 Identities=16% Similarity=0.333 Sum_probs=50.2
Q ss_pred ceEecCCCcHHHHHHHHHhcCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccCcccccCHHHHH
Q 012109 340 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 405 (471)
Q Consensus 340 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~dl~~~~~~~~~~~l~~~~~~v~~~~ 405 (471)
++++.+++++.+|+++|.+++++++||+|+ |+++|+||.+|+++.+..... ...+.++.++|
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~~~---~~~~~~v~~im 63 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAKGK---NPKEVKVEEIM 63 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTTTC---CGGGCBGGGTC
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHcCC---CcccCCHHHhc
Confidence 578999999999999999999999999997 999999999999987643211 01235666655
No 133
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.50 E-value=2.9e-07 Score=67.65 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=44.4
Q ss_pred cceEeCCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 012109 421 RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 470 (471)
Q Consensus 421 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~~l~ 470 (471)
++.++.+++++.+|++.|.+++++++||+| + ++++|+||.+||++++.
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d-~-~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME-G-DEILGVVTERDILDKVV 48 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEE-T-TEEEEEEEHHHHHHHTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 367899999999999999999999999999 4 99999999999999864
No 134
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=98.45 E-value=4.5e-07 Score=75.49 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=46.2
Q ss_pred ceeeEEEEecC---CCceEEEEee---cCCCCCC--CCCcccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 24 VLIPMRFVWPY---GGRSVFLSGS---FNRWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 24 ~~~~~~f~~~~---~~~~V~v~Gs---f~~W~~~--~~~~~~~--~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
..+.++|+-.. .++.|+|+|+ +.+|++. ++|.+.+ .....|++++.||+| .++|||++
T Consensus 7 ~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi 75 (131)
T 2z0b_A 7 GPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK 75 (131)
T ss_dssp CCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred CeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence 34677777443 4799999999 8999984 5887741 257899999999999 69999998
No 135
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=98.00 E-value=3.7e-06 Score=67.65 Aligned_cols=58 Identities=21% Similarity=0.468 Sum_probs=44.5
Q ss_pred ceeeEEEEecC---CCceEEEEeec---CCCCCC--CCCccccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 012109 24 VLIPMRFVWPY---GGRSVFLSGSF---NRWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 24 ~~~~~~f~~~~---~~~~V~v~Gsf---~~W~~~--~~~~~~~~--~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
..+.++|.-.. .|++|+|+|+. .+|++. ++|..... .++.|++++.||+| .++|||++
T Consensus 5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v 73 (108)
T 1ac0_A 5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR 73 (108)
T ss_dssp CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEE
T ss_pred CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEE
Confidence 34666776443 37999999986 489974 58876421 45899999999999 59999999
No 136
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*
Probab=97.71 E-value=0.0001 Score=73.74 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=65.6
Q ss_pred eeeEEEEecCC-C-------ceEEEE--eecC---CCCCCCCCccccCCCCeEEEEEEcCCceE-EEEEEEC--------
Q 012109 25 LIPMRFVWPYG-G-------RSVFLS--GSFN---RWSELLPMSPVEGCPTVFQIIWSIPPGYH-QYKFCVD-------- 82 (471)
Q Consensus 25 ~~~~~f~~~~~-~-------~~V~v~--Gsf~---~W~~~~~~~~~~~~~~~~~~~~~l~~g~~-~ykf~vd-------- 82 (471)
...|||.|... | ++|+|. |..+ +|.+ .+|+|.+ ..|.|+.+++||++-| .|.|+||
T Consensus 30 ~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~~-~~m~r~~-~~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~~ 107 (403)
T 3c8d_A 30 MFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQP-QSMQRIA-GTDVWQWTTQLNANWRGSYCFIPTERDDIFSA 107 (403)
T ss_dssp EEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------C-CBCEECT-TSSEEEEEEEEETTCEEEEEEEEESCCSTTCC
T ss_pred cEEEEEEeeCCCcccccCccceEEEECcCCCccccccCc-cccccCC-CCCeEEEEEEECCCcEEEEEEEecCccccccc
Confidence 46799999876 4 689998 3222 2222 4788853 5799999999999999 9999999
Q ss_pred ----------------CEEeeCCCCCeeeC-CCCCeeeEEEeccCCCC
Q 012109 83 ----------------GEWRHDEHQPFISS-EYGIVNTVLLATEPNFM 113 (471)
Q Consensus 83 ----------------g~w~~d~~~~~~~~-~~g~~nn~~~v~~~~~~ 113 (471)
|..+.||.||.... ..|...|++.+.....+
T Consensus 108 ~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~~~~ 155 (403)
T 3c8d_A 108 PSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPLQ 155 (403)
T ss_dssp C--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTCCCC
T ss_pred ccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCCCcC
Confidence 77899999997544 44888899999876444
No 137
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=97.57 E-value=0.00013 Score=77.78 Aligned_cols=66 Identities=33% Similarity=0.600 Sum_probs=52.1
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEE---CCEE--eeCCCCCee
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEW--RHDEHQPFI 94 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w--~~d~~~~~~ 94 (471)
-++|+ |...|++|+|+|+||+|+.. .+|.+. ...|.|++.++ +.+|. .|||.| ||+| +.||.....
T Consensus 137 g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~ 210 (722)
T 3k1d_A 137 GVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGT 210 (722)
T ss_dssp EEEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSB
T ss_pred eEEEEEECCCCCEEEEEeecCCCCCCcccCEEc-CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceee
Confidence 47788 99999999999999999864 688764 24699999998 78885 588887 5654 677777643
No 138
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=97.56 E-value=0.00019 Score=75.82 Aligned_cols=67 Identities=24% Similarity=0.428 Sum_probs=52.7
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEE---CCEE--eeCCCCCeee
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEW--RHDEHQPFIS 95 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w--~~d~~~~~~~ 95 (471)
-++|+ |...|++|.|+|+|++|+.. .+|.+. ..+|.|++.++ +.+|. .|+|.| ||.+ +.||......
T Consensus 26 gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-~~~GvW~~~v~~~~~g~-~Y~f~i~~~~g~~~~~~DPya~~~~ 100 (617)
T 1m7x_A 26 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-KESGIWELFIPGAHNGQ-LYKYEMIDANGNLRLKSDPYAFEAQ 100 (617)
T ss_dssp EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-TTTTEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSEE
T ss_pred cEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-CCCCEEEEEEcCCCCCC-EEEEEEEcCCCcEEEecCccceeec
Confidence 47787 99999999999999999753 688763 35799999998 77787 499998 6764 6777666443
No 139
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=97.49 E-value=0.00015 Score=77.96 Aligned_cols=63 Identities=25% Similarity=0.443 Sum_probs=49.8
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-------cCCceEEEEEEEC---CEE--eeCCCCC
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-------IPPGYHQYKFCVD---GEW--RHDEHQP 92 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~-~~~~~~~~~~~~~~~~~~-------l~~g~~~ykf~vd---g~w--~~d~~~~ 92 (471)
-++|+ |...|++|+|+|+||+|+.. ++|.+ ...|.|++.++ +++|.+ |||.|+ |+| +.||...
T Consensus 66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~--~~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~ 142 (755)
T 3aml_A 66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEK--DKFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR 142 (755)
T ss_dssp EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEE--CTTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred eEEEEEECCCCCEEEEEEecCCCCCceeecee--CCCCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence 47787 99999999999999999864 68987 35799999998 678864 888885 455 3476554
No 140
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=96.55 E-value=0.0068 Score=47.53 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=46.8
Q ss_pred eEEEEecCCCceEEEEeecC--CCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEECCE--EeeCCCC
Q 012109 27 PMRFVWPYGGRSVFLSGSFN--RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE--WRHDEHQ 91 (471)
Q Consensus 27 ~~~f~~~~~~~~V~v~Gsf~--~W~~~--~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~--w~~d~~~ 91 (471)
.+++.|..+.++|+|...+. +|... ++|.+.. .++.+..+++|+.| .++|+|. ||. |-.+...
T Consensus 6 ~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~~-~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~ 75 (104)
T 2laa_A 6 KVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAE-ISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTK 75 (104)
T ss_dssp EEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEET-TTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTS
T ss_pred EEEEEEcCCCCcEEEEEcCCCCCCCcCCcccccccc-CCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCc
Confidence 56777888899999999996 79874 4676542 24533699999986 8999995 774 7665443
No 141
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=96.41 E-value=0.0024 Score=68.91 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=44.7
Q ss_pred EEEE-ecCCCceEEEEeecCCCCC-----CCCCccccCCCCeEEEEEE-cC------CceEEEEEEECCE
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IP------PGYHQYKFCVDGE 84 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~-----~~~~~~~~~~~~~~~~~~~-l~------~g~~~ykf~vdg~ 84 (471)
++|+ |...|++|.|++ |++|.. .++|.+. .+|.|++.++ +. +|.|.|+|.|+|.
T Consensus 18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~ 84 (750)
T 1bf2_A 18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA--GSGVWAVTVPVSSIKAAGITGAVYYGYRAWGP 84 (750)
T ss_dssp EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC--STTEEEEEEEHHHHHHTTCCSCCEEEEEEEBT
T ss_pred EEEEEECCCCCEEEEEE-EccCCCCccceEEecccC--CCCEEEEEECCcccccccCCCCEEEEEEEEee
Confidence 6777 999999999999 987653 3578763 4699999988 66 8999999999974
No 142
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=96.34 E-value=0.0024 Score=66.49 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=51.0
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCE-EeeCCCCCe
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-WRHDEHQPF 93 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-w~~d~~~~~ 93 (471)
-++|+ |...|++|.|++.|+ ..++|.+. .+|.|++.++ +.+|. .|+|.|||. .+.||....
T Consensus 10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~--~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~ 73 (558)
T 3vgf_A 10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERD--EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY 73 (558)
T ss_dssp EEEEEEECTTCSCCEEEETTT---EEEECEEC--TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred cEEEEEECCCCCEEEEEEecC---ceeecccC--CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence 46777 999999999999997 55799874 4799999998 88885 699999996 888887764
No 143
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=96.12 E-value=0.0067 Score=63.51 Aligned_cols=61 Identities=8% Similarity=-0.048 Sum_probs=48.5
Q ss_pred CCceeeEEEE-ecCCCceEEE-EeecCCCCC----CCCCcccc--CCCCeEEEEEEcCCceEEEEEEEC
Q 012109 22 DTVLIPMRFV-WPYGGRSVFL-SGSFNRWSE----LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCVD 82 (471)
Q Consensus 22 ~~~~~~~~f~-~~~~~~~V~v-~Gsf~~W~~----~~~~~~~~--~~~~~~~~~~~l~~g~~~ykf~vd 82 (471)
....+.++|+ |.+.+++|.| +|+|++|+. ..+|.+.. +..+.|++.++.....+.|||.|.
T Consensus 19 ~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~ 87 (585)
T 1wzl_A 19 SETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT 87 (585)
T ss_dssp ETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence 3467888886 8889999999 899999975 46898743 223579999998877889999984
No 144
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=96.11 E-value=0.0059 Score=64.83 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=43.8
Q ss_pred eEEEE-ecCCCceEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCE
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE 84 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~--~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~ 84 (471)
-++|+ |...|++|.|++ |+++. ..++|.+. .+|.|++.++ +.+|.+ |+|.|+|.
T Consensus 20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~--~~g~w~~~v~~~~~g~~-Y~y~v~~~ 77 (657)
T 2wsk_A 20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH--SGDIWHGYLPDARPGLR-YGYRVHGP 77 (657)
T ss_dssp EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE--ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC--CCCEEEEEECCCCCCCE-EEEEEeee
Confidence 37787 999999999999 98765 35788763 4799999986 778876 99999883
No 145
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=96.01 E-value=0.0067 Score=63.68 Aligned_cols=62 Identities=23% Similarity=0.383 Sum_probs=50.2
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeee
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFIS 95 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~ 95 (471)
-++|+ |...|++|.|+|+ + ..++|.+. .+|.|++.+++.+|.+ |+|.|||..+.||......
T Consensus 35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~--~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~ 97 (602)
T 2bhu_A 35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSL--GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP 97 (602)
T ss_dssp CEEEEEECSSCSSEEEEET---T-EEEECEEE--ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred eEEEEEECCCCCEEEEEEc---C-CEEeCeeC--CCcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence 46777 9999999999994 2 35799875 3799999999888886 9999999777888776543
No 146
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=95.96 E-value=0.0075 Score=64.65 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=43.9
Q ss_pred eEEEE-ecCCCceEEEEeecCCCC-----CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~-----~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 85 (471)
-++|+ |...|++|.|++ |+++. ..++|.+. .+|.|++.++ +.+|.+ |+|.|+|.|
T Consensus 30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~--~~gvw~~~v~~~~~g~~-Y~y~v~g~~ 91 (718)
T 2vr5_A 30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK--TGDIWHVFVPGLRPGQL-YAYRVYGPY 91 (718)
T ss_dssp EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE--SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC--CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence 47787 999999999999 87643 24678763 4799999987 788987 999999853
No 147
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=95.59 E-value=0.024 Score=60.47 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=45.0
Q ss_pred CceeeEEEEecC-----CCceEEEEeecC---CCCC--------CC-CCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 23 TVLIPMRFVWPY-----GGRSVFLSGSFN---RWSE--------LL-PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 23 ~~~~~~~f~~~~-----~~~~V~v~Gsf~---~W~~--------~~-~~~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
...++++|+-.. -|++|+|+|+-. +|++ .+ +|.. .....|++++.||+| .++|||++
T Consensus 579 ~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~--~~~~~W~~~v~l~~~~~~eyKy~~ 653 (686)
T 1qho_A 579 GTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLA--PNYPDWFYVFSVPAGKTIQFKFFI 653 (686)
T ss_dssp SSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBC--TTTTSEEEEEEEETTCEEEEEEEE
T ss_pred CCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhccccc--CCCCcEEEEEEeCCCCeEEEEEEE
Confidence 356777777433 488999999986 7998 34 7765 346789999999999 69999998
No 148
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=95.57 E-value=0.0092 Score=62.53 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=48.6
Q ss_pred CCceeeEEEE-ecCCCceEEE-EeecCCCCC------CCCCccccC--CCCeEEEEEEcCCceEEEEEEEC
Q 012109 22 DTVLIPMRFV-WPYGGRSVFL-SGSFNRWSE------LLPMSPVEG--CPTVFQIIWSIPPGYHQYKFCVD 82 (471)
Q Consensus 22 ~~~~~~~~f~-~~~~~~~V~v-~Gsf~~W~~------~~~~~~~~~--~~~~~~~~~~l~~g~~~ykf~vd 82 (471)
....+.++|+ |...+++|.| +|+|++|+. ..+|.+... ..+.|++.++.....+.|+|.|.
T Consensus 19 ~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~ 89 (588)
T 1j0h_A 19 DSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY 89 (588)
T ss_dssp SSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred CCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence 4567888887 8889999999 799999965 468987532 24679999998777888999884
No 149
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=95.18 E-value=0.026 Score=60.57 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=48.1
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCC-CCCCccccCCCCeEEEEEE-cCCceEEEEEEEC--CE--EeeCCCCCe
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSE-LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD--GE--WRHDEHQPF 93 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~-~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vd--g~--w~~d~~~~~ 93 (471)
-++|+ |...|++|.|++.|++|.. .++|.+. .+|.|++.++ +.+| ..|+|.|+ |. +..||....
T Consensus 114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~--~~g~w~~~v~~~~~g-~~Y~f~v~~~g~~~~~~DPya~~ 184 (718)
T 2e8y_A 114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL--EKGVYAVTVTGDLHG-YEYLFCICNNSEWMETVDQYAKA 184 (718)
T ss_dssp EEEEEEECTTCSEEEEEEECTTSCCEEEECEEC--GGGEEEEEEESCCTT-CEEEEEEEETTEEEEECCTTCSS
T ss_pred cEEEEEECCCCCEEEEEEEcCCCcceEEeCccC--CCCEEEEEECCCCCC-CeEEEEEEeCCeEEEecCCcccc
Confidence 46777 9999999999999998865 3699874 3699999988 4566 35666664 76 456776653
No 150
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=95.15 E-value=0.035 Score=56.77 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=44.1
Q ss_pred CceeeEEEEec----CCCceEEEEeecC---CCCCCC---CCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 23 TVLIPMRFVWP----YGGRSVFLSGSFN---RWSELL---PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 23 ~~~~~~~f~~~----~~~~~V~v~Gsf~---~W~~~~---~~~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
...++++|.-. .-|++|+|+|+-. +|++.. +|... ..++.|++++.||+| .++|||++
T Consensus 417 ~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-~~p~~W~~~v~lp~~~~~eYKyv~ 485 (516)
T 1vem_A 417 VTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-SHSNDWRGNVVLPAERNIEFKAFI 485 (516)
T ss_dssp CCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-TTTTEEEEEEEEETTCCEEEEEEE
T ss_pred cCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-CCCCEEEEEEEECCCCcEEEEEEE
Confidence 34577888743 3489999999886 799863 45442 234599999999999 59999998
No 151
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Probab=95.11 E-value=0.025 Score=63.05 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=50.1
Q ss_pred EEEE-ecCCCceEEEEe-ecCCCCC-CCCCccccCCCCeEEEEEE-cCCceEEEEEEEC------CE----EeeCCCCCe
Q 012109 28 MRFV-WPYGGRSVFLSG-SFNRWSE-LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQPF 93 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~G-sf~~W~~-~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vd------g~----w~~d~~~~~ 93 (471)
++|+ |...|++|.|++ +|++|.. .++|.+. ...|.|++.++ +.+|.+ |+|.|+ |. .+.||....
T Consensus 306 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~~ 383 (1083)
T 2fhf_A 306 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAHS 383 (1083)
T ss_dssp EEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCSC
T ss_pred EEEEEECCCCCEEEEEEEcCCCCccceEECeEC-CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccce
Confidence 6777 999999999999 9999975 4688753 34689999986 678865 777774 43 478887764
Q ss_pred ee
Q 012109 94 IS 95 (471)
Q Consensus 94 ~~ 95 (471)
..
T Consensus 384 ~~ 385 (1083)
T 2fhf_A 384 LS 385 (1083)
T ss_dssp BC
T ss_pred ec
Confidence 43
No 152
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=94.83 E-value=0.059 Score=56.21 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=44.9
Q ss_pred CceeeEEEEecC---CCceEEEEeecC---CCCCC--CCCcccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 23 TVLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 23 ~~~~~~~f~~~~---~~~~V~v~Gsf~---~W~~~--~~~~~~~--~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
+..+.++|.-.. .|++|+|+|+-. +|++. ++|...+ .++..|++++.||+| .++|||+|
T Consensus 494 ~~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv 563 (599)
T 2vn4_A 494 PTSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN 563 (599)
T ss_dssp CSEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred CCeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence 345677777443 489999999876 89974 4777642 113789999999999 69999998
No 153
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=94.83 E-value=0.052 Score=57.83 Aligned_cols=59 Identities=29% Similarity=0.395 Sum_probs=46.3
Q ss_pred CceeeEEEEecC----CCceEEEEeecC---CCCCC--C-CCccc-cCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 23 TVLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 23 ~~~~~~~f~~~~----~~~~V~v~Gsf~---~W~~~--~-~~~~~-~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
...++|+|+-.. .|+.|+|+||-. +|++. + +|... ......|++++.||+| .++|||++
T Consensus 581 ~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~ 651 (683)
T 3bmv_A 581 GNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK 651 (683)
T ss_dssp SSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred CCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence 357888888644 489999999887 89974 4 66541 1246899999999999 79999997
No 154
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=94.73 E-value=0.057 Score=57.48 Aligned_cols=59 Identities=24% Similarity=0.420 Sum_probs=46.1
Q ss_pred CceeeEEEEecC----CCceEEEEeecC---CCCCC--C-CCccc-cCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 23 TVLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 23 ~~~~~~~f~~~~----~~~~V~v~Gsf~---~W~~~--~-~~~~~-~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
+..++|+|+-.. .|+.|+|+||-. +|++. + +|... ......|++++.||+| .++|||++
T Consensus 577 ~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~v~ 647 (680)
T 1cyg_A 577 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK 647 (680)
T ss_dssp SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence 357888888543 489999999876 89975 4 56541 1346899999999999 79999997
No 155
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=94.68 E-value=0.062 Score=57.28 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=45.8
Q ss_pred CceeeEEEEecC----CCceEEEEeecC---CCCCC--C-CCccc-cCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 23 TVLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 23 ~~~~~~~f~~~~----~~~~V~v~Gsf~---~W~~~--~-~~~~~-~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
+..++++|+-.. .|+.|+|+||-. +|++. + +|... ......|++++.||.| .++|||++
T Consensus 584 ~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~ 654 (686)
T 1d3c_A 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLK 654 (686)
T ss_dssp SSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTCEEEEEEEE
T ss_pred CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence 357888888543 489999999876 89974 4 56541 1346899999999999 79999997
No 156
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=94.52 E-value=0.034 Score=61.10 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=39.7
Q ss_pred EEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEECC
Q 012109 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG 83 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg 83 (471)
++|+ |...|++|.|++-+++|.+...+......+|.|++.++ +.+|. .|+|.|++
T Consensus 138 ~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~~~g~W~~~~~~~~~g~-~Y~y~v~~ 194 (884)
T 4aio_A 138 VSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWENR-YYLYEVDV 194 (884)
T ss_dssp EEEEEECTTCSEEEEEEESTTTSCEEEEEECEEETTEEEEEEEGGGTTC-EEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCeeeeeeecCCCCEEEEEECCCCCCC-EEEEEEeC
Confidence 6788 99999999999966666654321122245799999988 56665 48888865
No 157
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=94.49 E-value=0.027 Score=61.43 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=50.3
Q ss_pred EEEE-ecCCCceEEEEe-ecCCCCC---CCCCccccCCCCeEEEEEEcCCce-----EEEEEEEC--C--EEeeCCCCCe
Q 012109 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIPPGY-----HQYKFCVD--G--EWRHDEHQPF 93 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~G-sf~~W~~---~~~~~~~~~~~~~~~~~~~l~~g~-----~~ykf~vd--g--~w~~d~~~~~ 93 (471)
+.|+ |...|++|.|++ ++++|.. .++|.+ ..+|.|++.+.+.+|. +.|+|.|+ | ....||....
T Consensus 146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~ 223 (877)
T 3faw_A 146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVK--NNKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS 223 (877)
T ss_dssp EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEE--CTTSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred EEEEEECCCCCEEEEEEEeCCCCccceeeecccc--CCCCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence 6788 999999999998 7888853 578887 3579999999877762 67888886 3 3677887754
Q ss_pred e
Q 012109 94 I 94 (471)
Q Consensus 94 ~ 94 (471)
+
T Consensus 224 ~ 224 (877)
T 3faw_A 224 L 224 (877)
T ss_dssp B
T ss_pred c
Confidence 3
No 158
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=93.97 E-value=0.076 Score=56.83 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=48.7
Q ss_pred EEEE-ecCCCceEEEEe-ecCCCCC---CCCCccccCCCCeEEEEEEcC--Cc-----eEEEEEEEC--CE--EeeCCCC
Q 012109 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIP--PG-----YHQYKFCVD--GE--WRHDEHQ 91 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~G-sf~~W~~---~~~~~~~~~~~~~~~~~~~l~--~g-----~~~ykf~vd--g~--w~~d~~~ 91 (471)
++|+ |...|++|.|++ +|++|.. .++|.+. ..|.|++.++-. +| -+.|+|.|+ |. ...||..
T Consensus 26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya 103 (714)
T 2ya0_A 26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG--ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA 103 (714)
T ss_dssp EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC--GGGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC--CCCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCce
Confidence 6787 999999999999 8988864 5788873 469999998741 33 267888886 64 4678876
Q ss_pred Cee
Q 012109 92 PFI 94 (471)
Q Consensus 92 ~~~ 94 (471)
..+
T Consensus 104 ~~~ 106 (714)
T 2ya0_A 104 KSL 106 (714)
T ss_dssp SEE
T ss_pred eee
Confidence 543
No 159
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=93.82 E-value=0.07 Score=58.74 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=46.5
Q ss_pred eEEEE-ecCCCceEEEEeecCCCC----CCCCCccccCCCCeEEEEEE-cCCceEEEEEEE--CCE--EeeCCCCCe
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWS----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV--DGE--WRHDEHQPF 93 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~----~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~v--dg~--w~~d~~~~~ 93 (471)
-++|+ |...|++|.|++ |++|. ..++|.+. ..|.|++.++ +.+|. .|+|.| +|. ++.||....
T Consensus 326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~ 398 (921)
T 2wan_A 326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKS--DNGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARA 398 (921)
T ss_dssp EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEEC--GGGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSS
T ss_pred eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeC--CCCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCccee
Confidence 36777 999999999997 99994 34689874 3699999988 45664 366666 564 567776653
No 160
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=93.77 E-value=0.015 Score=60.72 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=46.8
Q ss_pred CCceeeEEEE-ecCCCceEEE-EeecCCCCC---CCCCcccc--CCCCeEEEEEEcCCceEEEEEEE
Q 012109 22 DTVLIPMRFV-WPYGGRSVFL-SGSFNRWSE---LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV 81 (471)
Q Consensus 22 ~~~~~~~~f~-~~~~~~~V~v-~Gsf~~W~~---~~~~~~~~--~~~~~~~~~~~l~~g~~~ykf~v 81 (471)
....+.++|+ |...+++|.| +|+|++|.. ..+|.+.. +..|.|++.++.....+.|||.|
T Consensus 19 ~~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i 85 (583)
T 1ea9_C 19 NGTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLL 85 (583)
T ss_dssp SSSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCC
T ss_pred CCCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEE
Confidence 4456777776 8889999999 799999975 46888743 22467999999877778888887
No 161
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=93.24 E-value=0.12 Score=54.37 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=48.2
Q ss_pred eEEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEEC-CEEeeCCCCCeee
Q 012109 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD-GEWRHDEHQPFIS 95 (471)
Q Consensus 27 ~~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~vd-g~w~~d~~~~~~~ 95 (471)
-++|+ |...|++|.|++ +|.. .+|.+. .+|.|.+.++ +.+|. .|+|.|+ |..+.||......
T Consensus 43 ~~~F~vwap~a~~v~l~~---~~~~-~~m~~~--~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~ 107 (618)
T 3m07_A 43 VVRFRLWATGQQKVMLRL---AGKD-QEMQAN--GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQK 107 (618)
T ss_dssp EEEEEEECTTCSCEEEEE---TTEE-EECEEC--STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBS
T ss_pred cEEEEEECCCCCEEEEEE---CCCc-ccCeec--CCEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeee
Confidence 36888 999999999998 4544 689874 4689999885 77776 5889995 5788888876543
No 162
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=91.86 E-value=0.16 Score=56.33 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=47.0
Q ss_pred EEEE-ecCCCceEEEEe-ecCCCCC---CCCCccccCCCCeEEEEEEcC--Cc-----eEEEEEEEC--CE--EeeCCCC
Q 012109 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIP--PG-----YHQYKFCVD--GE--WRHDEHQ 91 (471)
Q Consensus 28 ~~f~-~~~~~~~V~v~G-sf~~W~~---~~~~~~~~~~~~~~~~~~~l~--~g-----~~~ykf~vd--g~--w~~d~~~ 91 (471)
++|+ |...|++|.|++ +|++|.+ .++|.+ ...|.|++.++-. +| -+.|+|.|+ |. ...||..
T Consensus 333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa 410 (1014)
T 2ya1_A 333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEK--GERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA 410 (1014)
T ss_dssp EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEE--CGGGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred EEEEEECCCCCEEEEEEEECCCCCccceEEeccc--CCCCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccc
Confidence 6787 999999999999 8998864 478987 3579999998742 23 256778875 53 5677765
Q ss_pred C
Q 012109 92 P 92 (471)
Q Consensus 92 ~ 92 (471)
.
T Consensus 411 ~ 411 (1014)
T 2ya1_A 411 K 411 (1014)
T ss_dssp S
T ss_pred e
Confidence 4
No 163
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=91.15 E-value=0.12 Score=54.55 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=41.4
Q ss_pred eEEEE-e----cCCCceEEEEeecCCCCC-CCCCcc--cc--CCCCeEEEEEEcCCceEEEEEEECC
Q 012109 27 PMRFV-W----PYGGRSVFLSGSFNRWSE-LLPMSP--VE--GCPTVFQIIWSIPPGYHQYKFCVDG 83 (471)
Q Consensus 27 ~~~f~-~----~~~~~~V~v~Gsf~~W~~-~~~~~~--~~--~~~~~~~~~~~l~~g~~~ykf~vdg 83 (471)
.++|+ | ...+++|.|++.|++ .. .++|.+ .. +..+.|++.++.......|+|.|+|
T Consensus 31 ~v~f~v~~~~~ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~ 96 (637)
T 1ji1_A 31 SVTLKLRTFKGDITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND 96 (637)
T ss_dssp CEEEEEEEETTCCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred EEEEEEEEecCcCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence 46666 7 667999999999874 32 368877 32 2347999999876666789999964
No 164
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=90.57 E-value=0.048 Score=56.19 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=0.0
Q ss_pred ceeeEEEEe-cC---CCceEEEEeecC---CCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 012109 24 VLIPMRFVW-PY---GGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (471)
Q Consensus 24 ~~~~~~f~~-~~---~~~~V~v~Gsf~---~W~~~--~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~v 81 (471)
..++++|+- .. .|++|+|+||-. +|++. ++|... .....|++++.||+| .++|||++
T Consensus 429 ~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-~~~~~W~~~v~lp~~~~~eyKy~~ 495 (527)
T 1gcy_A 429 ALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-SGYPTWKGSIALPAGQNEEWKCLI 495 (527)
T ss_dssp --------------------------------------------------------------------
T ss_pred CEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-CCCCeEEEEEEeCCCCcEEEEEEE
Confidence 457788874 22 389999999887 79874 577531 246789999999999 69999997
No 165
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}
Probab=90.18 E-value=0.24 Score=44.56 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=40.5
Q ss_pred CceEEEEeecCCCCCC--CCCccccCCCCeEEEEEEcCCceEEEEEEECCEEe
Q 012109 36 GRSVFLSGSFNRWSEL--LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86 (471)
Q Consensus 36 ~~~V~v~Gsf~~W~~~--~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~ 86 (471)
.+++||+|++++|... .+|.+....++.|...+.|+.|. +|||.-+..|-
T Consensus 12 p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~~ 63 (221)
T 4fch_A 12 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENEY 63 (221)
T ss_dssp CSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTCC
T ss_pred cceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCcc
Confidence 6789999999988643 58887766789999999998775 89999776553
No 166
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=90.15 E-value=0.42 Score=52.54 Aligned_cols=63 Identities=25% Similarity=0.439 Sum_probs=44.3
Q ss_pred ceeeEEEEecCCCceEEEEeec-------CCCCCCCCCccc-cCCCCeEEEEEEcCCceEEEEEEECCEEe
Q 012109 24 VLIPMRFVWPYGGRSVFLSGSF-------NRWSELLPMSPV-EGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86 (471)
Q Consensus 24 ~~~~~~f~~~~~~~~V~v~Gsf-------~~W~~~~~~~~~-~~~~~~~~~~~~l~~g~~~ykf~vdg~w~ 86 (471)
.++|+...-...+..+.+.|+| .+|++.-....+ .-.+|.|+.+-.||+|.|+||+-++|.|-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~~~~~y~~~~~l~~g~y~~kv~~~~~w~ 221 (921)
T 2wan_A 151 EKIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKINPNLYQLSGTLPAGTYQYKIALDHSWN 221 (921)
T ss_dssp CEECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEEETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred ccccccccccccccccccccchhhhccccccCCCCCCcceeeccCCcceeeeeccCCcceeEEEeecCccc
Confidence 3455555555556678888876 468876322221 12378999999999999999999997773
No 167
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=88.02 E-value=1.4 Score=34.23 Aligned_cols=60 Identities=17% Similarity=0.423 Sum_probs=42.5
Q ss_pred eEEEEecCCCceEEEEeecCC--CCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEECC--EEeeC
Q 012109 27 PMRFVWPYGGRSVFLSGSFNR--WSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDG--EWRHD 88 (471)
Q Consensus 27 ~~~f~~~~~~~~V~v~Gsf~~--W~~~--~~~~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg--~w~~d 88 (471)
.+++.|..+..+|+|-=.+.+ |... ++|.+. ...|.|..+++|+.+ .++|+| -|| .|=.+
T Consensus 11 ~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~-~~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN 77 (102)
T 2c3v_A 11 DITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKS-EXEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNN 77 (102)
T ss_dssp SEEEEEECCCSSCEEEEEETTCCBCCTTCEECEEC-SSTTEEEEEECCCTTCEEEEEE-ECSSSCEECG
T ss_pred EEEEEEcCCCCcEEEEEeCCCCCcccCCCcCcccc-ccCCceEEEEecCCCceEEEEE-eCCCcccccC
Confidence 344555577899988877764 8763 466553 257888999999975 799999 454 47554
No 168
>4fe9_A Outer membrane protein SUSF; starch binding, IG fold, extracellular surface, outermembran carbohydrate-binding protein; HET: GLC BGC MTT; 2.00A {Bacteroides thetaiotaomicron}
Probab=69.57 E-value=5 Score=40.26 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=36.2
Q ss_pred CceEEEEeecCCCCCC--CCCccccCCCCeEEEEEEcCCceEEEEEEEC
Q 012109 36 GRSVFLSGSFNRWSEL--LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82 (471)
Q Consensus 36 ~~~V~v~Gsf~~W~~~--~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vd 82 (471)
.+..||+|++++|... .+|.+....++.|++...+..+. +|||+..
T Consensus 150 ~~~~YlvG~~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fK~~~~ 197 (470)
T 4fe9_A 150 PDGYYIVGDFTGWDGNSAQQMKKDALDENLYILEAEIESTS-NFKIFPA 197 (470)
T ss_dssp TTCEEEEETTTCSSGGGCEECEECSSCTTEEEEEEEESSCC-EEEEEEG
T ss_pred cceeEEEcccCCCCcccCeeeeeecCCCceEEEEEEeccCc-eEEEeec
Confidence 4568999999999864 36666556788999999997766 7999864
No 169
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=65.23 E-value=7.1 Score=31.20 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=20.0
Q ss_pred EEEcCCc-eEEEEEEECCEEeeCCCC
Q 012109 67 IWSIPPG-YHQYKFCVDGEWRHDEHQ 91 (471)
Q Consensus 67 ~~~l~~g-~~~ykf~vdg~w~~d~~~ 91 (471)
++.|..| +|.|+| ++|+|+.+.+-
T Consensus 99 svtl~rG~t~~F~y-~~g~Wv~~gd~ 123 (126)
T 4dny_A 99 KVTLSVGNTLLFKY-VNGQWFRSGEL 123 (126)
T ss_dssp EEEECTTCEEEEEE-ETTEEEETTCC
T ss_pred EEEecCCCEEEEEE-cCCEEEEcccc
Confidence 4678889 899999 99999987653
No 170
>4fe9_A Outer membrane protein SUSF; starch binding, IG fold, extracellular surface, outermembran carbohydrate-binding protein; HET: GLC BGC MTT; 2.00A {Bacteroides thetaiotaomicron}
Probab=62.46 E-value=6.2 Score=39.56 Aligned_cols=54 Identities=24% Similarity=0.482 Sum_probs=38.9
Q ss_pred CceEEEEeecCCCCCC-------CCCccccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCC
Q 012109 36 GRSVFLSGSFNRWSEL-------LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEH 90 (471)
Q Consensus 36 ~~~V~v~Gsf~~W~~~-------~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~ 90 (471)
...++++|++++|... .+|.+....++.|...+.+..+ .+|||.-++.|-.+..
T Consensus 260 ~~~lyivG~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-gefKF~~~~~W~~~~G 320 (470)
T 4fe9_A 260 PTELYMTGSAYNWGTPAGDPNAWKALVPVNGTKGTFWGIFYFAAN-DQVKFAPQANWGNDFG 320 (470)
T ss_dssp CSCCEEEEGGGGGGCSTTCTTTCEECEECTTCTTEEEEEEEECTT-CEEEEESSSSSSSCBC
T ss_pred cceEEEEeecccCCCCCCCcccccccccccCcCceEEEEEEECCC-ceEEEEecCCcccccc
Confidence 4679999999977431 2344444567889999888655 5899999988865543
No 171
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=60.89 E-value=23 Score=27.48 Aligned_cols=53 Identities=13% Similarity=0.047 Sum_probs=35.8
Q ss_pred CceEEEEee--cCCCCC-CCCCc--cc----cCCCCeEEEEEEcCCc-eEEEEEEECCEEeeC
Q 012109 36 GRSVFLSGS--FNRWSE-LLPMS--PV----EGCPTVFQIIWSIPPG-YHQYKFCVDGEWRHD 88 (471)
Q Consensus 36 ~~~V~v~Gs--f~~W~~-~~~~~--~~----~~~~~~~~~~~~l~~g-~~~ykf~vdg~w~~d 88 (471)
.|.|.|-=+ |++|+. ..... -. ...-..|...++||+- .+--+|.++|+-.-|
T Consensus 33 eK~V~VR~T~~~D~W~t~~~dv~a~y~~~~~~~~~D~F~F~i~l~~~~eFcIrY~v~g~eyWD 95 (106)
T 2djm_A 33 SKKVTVVYADGSDNWNNNGNIIAASFSGPISGSNYEYWTFSASVKGIKEFYIKYEVSGKTYYD 95 (106)
T ss_dssp CEEEEEEEEETTSSCSSCCCEEECEEEEECTTSSCEEEEEEECCSSEEEEEEEEEESSCEEEE
T ss_pred CcEEEEEECCCcCCCccccEEEEEEEecCCCCCCeEEEEEEEECCCCeEEEEEEEECCcEEEc
Confidence 477888777 999988 32211 11 1234589999999866 677889999964333
No 172
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.19 E-value=13 Score=31.08 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=36.6
Q ss_pred CceEEEEeecCCCCCCC--CCccccC-----CCCeEEEEEEcCC-----c--eEEEEEEECCEEe
Q 012109 36 GRSVFLSGSFNRWSELL--PMSPVEG-----CPTVFQIIWSIPP-----G--YHQYKFCVDGEWR 86 (471)
Q Consensus 36 ~~~V~v~Gsf~~W~~~~--~~~~~~~-----~~~~~~~~~~l~~-----g--~~~ykf~vdg~w~ 86 (471)
.|+|+|-=+|++|+... ++..... ....|...+.||+ + .+-.+|.++|+-.
T Consensus 60 eK~V~VR~T~D~Wkt~~dv~a~y~~~~~~~~~~D~F~F~I~lp~~~~~~~~leFcIrY~v~g~ey 124 (156)
T 2eef_A 60 EKTVKIRMTFDTWKSYTDFPCQYVKDTYAGSDRDTFSFDISLPEKIQSYERMEFAVYYECNGQTY 124 (156)
T ss_dssp CCEEEEEEESSTTSSEEEEECEECCCSSSCSSSCEEEECCCCCSCCCTTSCCEEEEEEEETTEEE
T ss_pred CcEEEEEEeECCCcccEEEEEEEccccCCCCCceEEEEEEECCCccCCCcEEEEEEEEEeCCCEE
Confidence 68899999999998643 3333211 2347999999986 2 6778899999633
No 173
>4fem_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: ACX; 2.50A {Bacteroides thetaiotaomicron}
Probab=51.18 E-value=10 Score=36.45 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=39.0
Q ss_pred CceEEEEeecCCCCC--CCCCccccCCCCeEEEEEEcCCceEEEEEEECCEEee
Q 012109 36 GRSVFLSGSFNRWSE--LLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRH 87 (471)
Q Consensus 36 ~~~V~v~Gsf~~W~~--~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~ 87 (471)
.+..|++|++.+|.. ..+|.+....+|.|...+.|+.| ..|||.-+..|-.
T Consensus 149 p~~lYlvG~~~~~~w~~~~~l~~~~~~~g~y~~~~yl~~~-~~fKf~~~~~~~~ 201 (358)
T 4fem_A 149 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDAN-SEFKFGTKENEYI 201 (358)
T ss_dssp CSCCEEEETTTCTTSCCEEECEECTTSTTEEEEEEEECTT-EEEEEESSTTCCB
T ss_pred cceEEEeccccCCCCcccceeeeccCCCceEEEEEEecCC-ceEEeccccCCcc
Confidence 578999999987644 34777766678999999999876 5789987665543
No 174
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=50.04 E-value=33 Score=26.67 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=42.5
Q ss_pred CCceeeEEEEecCCC---ceEEEEe-ecCCCCCCCCCccccCCCCeEEEEE-EcCCceEEEEEEE-CCEEeeC
Q 012109 22 DTVLIPMRFVWPYGG---RSVFLSG-SFNRWSELLPMSPVEGCPTVFQIIW-SIPPGYHQYKFCV-DGEWRHD 88 (471)
Q Consensus 22 ~~~~~~~~f~~~~~~---~~V~v~G-sf~~W~~~~~~~~~~~~~~~~~~~~-~l~~g~~~ykf~v-dg~w~~d 88 (471)
.+.-.-+.+.+.+|+ .+|.|.| +=.+|. +|.+. +..|++.- ....|-+.||+.. ||+|+..
T Consensus 24 np~~l~VlV~nv~G~GdI~~V~Ik~~~~~~W~---~M~rn---Ga~W~~~s~~~L~GplSfRvtts~G~~~va 90 (108)
T 2jnz_A 24 DPKKLVLDIKYTRPGDSLAEVELRQHGSEEWE---PLTKK---GNVWEVKSSKPLVGPFNFRFMSKGGMRNVF 90 (108)
T ss_dssp CSSEEEEEEEEEBTTBCEEEEEEECTTCCCCE---ECEEE---TTEEEEECSSCCCSSEEEEEEETTTEEEEE
T ss_pred CccEEEEEEEEeCCCCCEEEEEEEeCCCCcEe---Ecccc---CCEeEeCCCCCCCCCEEEEEEEcCCcEEEE
Confidence 344556667776664 6689996 667885 67773 67899775 1345788888887 6887765
No 175
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=45.42 E-value=12 Score=26.04 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=16.0
Q ss_pred eecCCCCCCCCCccccCCCCeEEEEEEcCCc
Q 012109 43 GSFNRWSELLPMSPVEGCPTVFQIIWSIPPG 73 (471)
Q Consensus 43 Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g 73 (471)
|||.+|+.. .| +. +++.-+..+.+|.|
T Consensus 1 ~~~s~W~qP-~l-k~--~g~~KsL~Lf~P~g 27 (75)
T 2fqm_A 1 GSHMDWKQP-EL-ES--DEHGKTLRLTLPEG 27 (75)
T ss_dssp ----CCCCC-EE-EE--ETTEEEEEEECCSS
T ss_pred CCcccccCc-ee-ec--CCCCceEEEeCCCC
Confidence 899999873 34 32 35677888888877
No 176
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=42.47 E-value=42 Score=24.36 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 012109 361 VSSIPIVDDNDSLLDIYCRSDITALAKDK 389 (471)
Q Consensus 361 ~~~lpVvd~~g~lvGivt~~dl~~~~~~~ 389 (471)
...+=++|++|..+|+++.++.++.....
T Consensus 13 ~~eVrli~~~Ge~lGv~~~~eAl~~A~e~ 41 (78)
T 1tif_A 13 AREVRLIDQNGDQLGIKSKQEALEIAARR 41 (78)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHHHHc
Confidence 34577899999999999999999876553
No 177
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}
Probab=39.26 E-value=11 Score=33.61 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=35.0
Q ss_pred ceEEEEeec--CCCCCC--CCCccccCCCCeEEEEEEcCCceEEEEEEECCEE
Q 012109 37 RSVFLSGSF--NRWSEL--LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEW 85 (471)
Q Consensus 37 ~~V~v~Gsf--~~W~~~--~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w 85 (471)
.+|+|+|+- ++|... .+|......++.|.....|..|.++++|..+..|
T Consensus 117 ~~v~liG~at~~gW~~~~~~~~t~~~t~~g~~~~~~~l~~Ge~k~~~~~~~DW 169 (221)
T 4fch_A 117 AEVYLFGNTTGGSWAFNDEWKFTVPATKDGNFVSPAMTASGEVRMCFKTDLDW 169 (221)
T ss_dssp CCEEEEBGGGTSBCSCBGGGBCBCCSSTTCCEECCCCCSCEECEEEECCSSCG
T ss_pred ceEEEEEeecCCCCCCCcccceeeccCCCceEEeEEEecCCcEEEEEcCCCCc
Confidence 469999984 589754 3554433567889999999999877776655444
No 178
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=38.90 E-value=39 Score=35.23 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=37.6
Q ss_pred ceeeEEEE-ecCCCceEEEEeecCCCCCCCCCccccCCCC---eEEEEEEcCCceEEEEEEE
Q 012109 24 VLIPMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPT---VFQIIWSIPPGYHQYKFCV 81 (471)
Q Consensus 24 ~~~~~~f~-~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~---~~~~~~~l~~g~~~ykf~v 81 (471)
..+.++|+ +++..++|.++|. ...||.+.. +++ .|++.++.+.....|+|.|
T Consensus 123 ~~~~~r~~~~~~~~~~~~~~~~-----~~~~m~~~~-~~~~~d~w~~~v~~~~~~~~Y~f~i 178 (645)
T 4aef_A 123 GRVHVLLRTQKGVIKGATFLGE-----KHVPMRKKA-SDELFDYFEVIVEGGDKRLNYSFEV 178 (645)
T ss_dssp TEEEEEEEEETTTEEEEEEESS-----SEEECEEEE-ECSSEEEEEEEEECSCSCEEEEEEE
T ss_pred CeEEEEEEcccCCcceEEEeCC-----CEEEEEEEe-cCCCeEEEEEEEECCCCceEEEEEE
Confidence 35666776 4445678888864 457998863 344 4899999888888999987
No 179
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=38.24 E-value=13 Score=24.74 Aligned_cols=13 Identities=46% Similarity=0.864 Sum_probs=10.9
Q ss_pred ECCEEeeCCCCCe
Q 012109 81 VDGEWRHDEHQPF 93 (471)
Q Consensus 81 vdg~w~~d~~~~~ 93 (471)
|||+|.+|+...+
T Consensus 48 vdgeWsYD~ATkT 60 (65)
T 1mhx_A 48 VDGEWTYDDAAKT 60 (65)
T ss_dssp CCSEEEEETTTTE
T ss_pred CccEEEecCceeE
Confidence 6899999998775
No 180
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=35.06 E-value=54 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=20.9
Q ss_pred CCEEEEEeCCCCeEEEEEehHHHHHH
Q 012109 443 VRRLVIVEAGSKRVEGIVSLSDIFKF 468 (471)
Q Consensus 443 ~~~l~Vvd~~~~~liGiIs~~Dil~~ 468 (471)
.+.+=++| ++|..+|++++.+.++.
T Consensus 13 ~~eVrli~-~~Ge~lGv~~~~eAl~~ 37 (78)
T 1tif_A 13 AREVRLID-QNGDQLGIKSKQEALEI 37 (78)
T ss_dssp CSEEEEEC-TTSCEEEEEEHHHHHHH
T ss_pred CCEEEEEC-CCCcCCCcccHHHHHHH
Confidence 45677899 58999999999998875
No 181
>2bem_A CBP21; chitin-binding protein, chitin degradation, chitin-binding, FNIII-like fold; 1.55A {Serratia marcescens} SCOP: b.1.18.2 PDB: 2lhs_A 2ben_A
Probab=32.61 E-value=1.3e+02 Score=25.23 Aligned_cols=72 Identities=14% Similarity=0.291 Sum_probs=44.0
Q ss_pred eEEEEecCCCce------EEEEeecCCCCCCCCCcccc--------------CCCCeEEEEEEcCCceEEEEEEECCEEe
Q 012109 27 PMRFVWPYGGRS------VFLSGSFNRWSELLPMSPVE--------------GCPTVFQIIWSIPPGYHQYKFCVDGEWR 86 (471)
Q Consensus 27 ~~~f~~~~~~~~------V~v~Gsf~~W~~~~~~~~~~--------------~~~~~~~~~~~l~~g~~~ykf~vdg~w~ 86 (471)
+++|+|...|.. +||+- .+|++..||++.+ ..++.|+.++.||.|+--| ++|=..|.
T Consensus 76 ~~~f~w~~TA~H~t~~~~~YITK--~gwdp~~pLtw~dlel~pf~~~~~~~~~p~~~~~~~~~lP~~rsG~-hVI~~vWq 152 (170)
T 2bem_A 76 PNSFTWKLTARHSTTSWRYFITK--PNWDASQPLTRASFDLTPFCQFNDGGAIPAAQVTHQCNIPADRSGS-HVILAVWD 152 (170)
T ss_dssp EEEEEEEESSCCCEEEEEEEEEC--TTCCTTSCCCGGGEEEEEEEEEECTTCCCCSEEEEEEEECTTCCEE-EEEEEEEE
T ss_pred cEEEEEEeecccCCceEEEEECC--CCCCCCCCccHHHccccceeecCCCCcCCCceEEEEEEcCCCCccC-EEEEEEEE
Confidence 688888877533 66654 4687777776421 1124677788888764433 45556788
Q ss_pred eCCCCCeeeCCCCCeeeEEEec
Q 012109 87 HDEHQPFISSEYGIVNTVLLAT 108 (471)
Q Consensus 87 ~d~~~~~~~~~~g~~nn~~~v~ 108 (471)
..+ ....+.|++.|.
T Consensus 153 ~~D-------t~eaFY~c~DV~ 167 (170)
T 2bem_A 153 IAD-------TANAFYQAIDVN 167 (170)
T ss_dssp ESS-------SSEEEEEEEEEE
T ss_pred ecc-------CCCCCEEEEEEE
Confidence 865 112466666653
No 182
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=31.64 E-value=20 Score=24.07 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=10.5
Q ss_pred ECCEEeeCCCCCe
Q 012109 81 VDGEWRHDEHQPF 93 (471)
Q Consensus 81 vdg~w~~d~~~~~ 93 (471)
|||+|.+|+.-.+
T Consensus 44 vdgew~yd~atkt 56 (61)
T 1igd_A 44 VDGVWTYDDATKT 56 (61)
T ss_dssp CCCEEEEETTTTE
T ss_pred CCceEeecCceeE
Confidence 5899999988764
No 183
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=31.63 E-value=20 Score=29.97 Aligned_cols=35 Identities=37% Similarity=0.676 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 012109 431 LHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 467 (471)
Q Consensus 431 l~~a~~~m~~~~~~~l~Vvd~~~~~liGiIs~~Dil~ 467 (471)
+.+.++.+...+..-++|.. +++++|+|.+.|.+|
T Consensus 121 ~~~~~~~la~~G~T~v~VA~--d~~l~GvIalaD~iK 155 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVE--GSRVLGVIALKDIVK 155 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEE--TTEEEEEEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEEE--CCEEEEEEEEecCCC
Confidence 67778889999988888887 599999999988653
No 184
>3fil_A Immunoglobulin G-binding protein G; dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding; HET: FME; 0.88A {Streptococcus SP} SCOP: d.15.7.1 PDB: 2qmt_A 2jsv_X 2ju6_X 2k0p_A 2kq4_X 2kwd_A 2lgi_A 2gi9_A 1gb1_A 1pga_A 1pgb_A 2gb1_A 3gb1_A 2klk_A 2rmm_A 2onq_A 2on8_A 2j52_A 2j53_A 3v3x_A* ...
Probab=31.45 E-value=13 Score=24.30 Aligned_cols=13 Identities=46% Similarity=0.869 Sum_probs=10.2
Q ss_pred ECCEEeeCCCCCe
Q 012109 81 VDGEWRHDEHQPF 93 (471)
Q Consensus 81 vdg~w~~d~~~~~ 93 (471)
|||+|.+|+...+
T Consensus 39 vdgeW~YD~ATkT 51 (56)
T 3fil_A 39 VDGEWTYDDATKT 51 (56)
T ss_dssp CCCEEEEEGGGTE
T ss_pred CccEEEecCceeE
Confidence 6899999887664
No 185
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=30.61 E-value=50 Score=26.91 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=31.7
Q ss_pred CCCceeeEEEEecCC---Cc--eEEEEeecCCCCCCCCCccccCC---CCeEEEEEEcCCceEEEEEEECC
Q 012109 21 PDTVLIPMRFVWPYG---GR--SVFLSGSFNRWSELLPMSPVEGC---PTVFQIIWSIPPGYHQYKFCVDG 83 (471)
Q Consensus 21 ~~~~~~~~~f~~~~~---~~--~V~v~Gsf~~W~~~~~~~~~~~~---~~~~~~~~~l~~g~~~ykf~vdg 83 (471)
+....+.++|+|..+ .+ +|+|=|... ..+.+... +. -...++.+.|++|.+..+|..++
T Consensus 48 ~~aG~Y~l~~ryang~~~~r~~~l~VNG~~~---~~v~~p~T-g~W~~w~t~~~~v~L~aG~ntI~l~~~~ 114 (145)
T 2w3j_A 48 ASAKTYTAQIRFGNGGTSARRATVVVNDSQI---KTLDFPTN-SNWTQWQTVNVDIPLKAGTNSIKLVAET 114 (145)
T ss_dssp SSCEEEEEEEEEECCSSSCCCEEEEETTEEE---EEECCCCC-SCTTSCEEEEEEEEECSEEEEEEEEECS
T ss_pred CCCeEEEEEEEEECCCCCCeEEEEEECCeEe---eEEEecCC-CCCCeeEEEEEEEEECCCceEEEEEEec
Confidence 355678888888743 23 344433221 11111110 00 01234578999999999998653
No 186
>4a02_A EFCBM33A, CBM33, chitin binding protein; chitin degradation, chitin oxidation; 0.95A {Enterococcus faecalis} SCOP: b.1.18.0
Probab=28.23 E-value=1.9e+02 Score=24.25 Aligned_cols=72 Identities=14% Similarity=0.341 Sum_probs=43.6
Q ss_pred eEEEEecCCCce------EEEEeecCCCCCCCCCcccc------------CCCCeEEEEEEcCCceEEEEEEECCEEeeC
Q 012109 27 PMRFVWPYGGRS------VFLSGSFNRWSELLPMSPVE------------GCPTVFQIIWSIPPGYHQYKFCVDGEWRHD 88 (471)
Q Consensus 27 ~~~f~~~~~~~~------V~v~Gsf~~W~~~~~~~~~~------------~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d 88 (471)
+++|+|...|.. +||+- .+|++..||++.+ ..++.|+.++.||.++--| ++|=..|...
T Consensus 75 ~~~f~w~~TA~H~t~~~~~YITK--~gwdp~~pLtw~dle~~~~~~~~~~~p~~~y~~~v~lP~~rsG~-hVI~~vWq~~ 151 (166)
T 4a02_A 75 PLDITWNLTAQHRTASWDYYITK--NGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGY-HVIYAVWGIG 151 (166)
T ss_dssp EEEEEEEESSCCCEEEEEEEEEC--TTCCTTSCCCGGGEEEEEEEEEEEECCCSEEEEEEEECTTCCEE-EEEEEEEEES
T ss_pred ceEEEEeeecccCCCeEEEEEcC--CCCCCCCCccHHHCeeeeeecCCCcCCCCeEEEEEEeCCCCccC-EEEEEEEEec
Confidence 478888876533 66653 4788877887432 1245677778887653222 2555678887
Q ss_pred CCCCeeeCCCCCeeeEEEec
Q 012109 89 EHQPFISSEYGIVNTVLLAT 108 (471)
Q Consensus 89 ~~~~~~~~~~g~~nn~~~v~ 108 (471)
+. ...+.|++.|.
T Consensus 152 Dt-------~eaFY~csDV~ 164 (166)
T 4a02_A 152 DT-------VNAFYQAIDVN 164 (166)
T ss_dssp SS-------SEEEEEEEEEE
T ss_pred CC-------CCCCEEEEEEE
Confidence 54 22356666653
No 187
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A
Probab=25.58 E-value=1.8e+02 Score=21.99 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=40.8
Q ss_pred ceeeEEEEecCCC---ceEEEEeecC-CCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEE-CCEEeeC
Q 012109 24 VLIPMRFVWPYGG---RSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV-DGEWRHD 88 (471)
Q Consensus 24 ~~~~~~f~~~~~~---~~V~v~Gsf~-~W~~~~~~~~~~~~~~~~~~~~~-l~~g~~~ykf~v-dg~w~~d 88 (471)
.-.-+.+.+.+|+ .+|.|.|+=+ +|. +|.+ - +..|++.-. ...|-+.||+.. ||+++..
T Consensus 15 ~~l~vlv~nv~G~gdI~~V~ik~s~t~~W~---~M~r-w--Ga~W~~~s~~~l~GplSfRvt~~~G~~~v~ 79 (100)
T 3ft1_A 15 KKLVLDIKYTRPGDSLAEVELRQHGSEEWE---PLTK-K--GNVWEVKSSKPLVGPFNFRFMSKGGMRNVF 79 (100)
T ss_dssp TEEEEEEEEECTTCCEEEEEEECTTCCCCE---ECEE-E--TTEEEEECSSCCCSSEEEEEEETTCCEEEE
T ss_pred ceEEEEEEEcCCCccEEEEEEEeCCCCCeE---Eecc-c--CCEeEeCCCCCCCCCEEEEEEEcCCcEEEE
Confidence 3455666676665 5689999976 685 5666 3 567988752 345788888886 7887664
No 188
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=25.44 E-value=54 Score=34.50 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=36.4
Q ss_pred ceeeEEEEecCCCceEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEEC
Q 012109 24 VLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82 (471)
Q Consensus 24 ~~~~~~f~~~~~~~~V~v~Gsf~~W~~~~~~~~~~~~~~~~~~~~~l~~g~~~ykf~vd 82 (471)
..+.++|+-+.+..+|.+...-..|.. .|....+....|+++++ +.+.+.|.|.++
T Consensus 132 ~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Y~f~~~ 187 (696)
T 4aee_A 132 GEIIIRLIAPTEINEPLIDLGNEIREP--LTKHVVGDNIVYQYIIP-SRSILRYRFIFN 187 (696)
T ss_dssp TEEEEEEEEETTSCCCEEECSSCEECC--SEEEEETTEEEEEEEEE-CCSEEEEEEEEE
T ss_pred CEEEEEEEEcCCCCEEEEEcCCcceee--eeeeecCCceEEEEEEc-CCCeEEEEEEEE
Confidence 567788874446677777654334432 23333233458999999 777899999984
No 189
>4gln_D D-RFX001; heterochiral protein-protein complex, D-protein antagonist, factor-inihibitor complex; HET: DTY DSG DTH DVA DPN DTR DGL DIL DAS; 1.60A {Synthetic} PDB: 4gls_D* 4gls_C*
Probab=24.81 E-value=29 Score=22.71 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=12.4
Q ss_pred EEEEC-CEEeeCCCCCe
Q 012109 78 KFCVD-GEWRHDEHQPF 93 (471)
Q Consensus 78 kf~vd-g~w~~d~~~~~ 93 (471)
..-|| |+|.+|+...+
T Consensus 35 ~n~~d~geWtYddaTKT 51 (56)
T 4gln_D 35 SXFSDFDDWTYDDATKT 51 (56)
T ss_pred hcCCcCCeeEecCccee
Confidence 44577 99999998764
No 190
>2rpv_A Immunoglobulin G-binding protein G; lanthanide binding peptide, LBT, paramagnetic effect, olivia, cell WALL, IGG-binding protein; NMR {Streptococcus SP}
Probab=24.75 E-value=29 Score=24.00 Aligned_cols=13 Identities=46% Similarity=0.869 Sum_probs=10.2
Q ss_pred ECCEEeeCCCCCe
Q 012109 81 VDGEWRHDEHQPF 93 (471)
Q Consensus 81 vdg~w~~d~~~~~ 93 (471)
|||+|.+|+.-.+
T Consensus 58 vdgeWsYD~ATkT 70 (75)
T 2rpv_A 58 VDGEWTYDDATKT 70 (75)
T ss_dssp CCSEEEEETTTTE
T ss_pred CCceEeecCceeE
Confidence 5888988887764
No 191
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=22.33 E-value=72 Score=24.58 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=13.3
Q ss_pred ceEEEEEEECCEEeeCCCC
Q 012109 73 GYHQYKFCVDGEWRHDEHQ 91 (471)
Q Consensus 73 g~~~ykf~vdg~w~~d~~~ 91 (471)
| |+|.|. +|.|+++-+.
T Consensus 68 G-~hfd~~-~~~Wi~~r~g 84 (106)
T 1ew4_A 68 G-YHFDLK-GDEWICDRSG 84 (106)
T ss_dssp E-EEEEEE-TTEEEETTTC
T ss_pred c-eeeeec-CCEEEECCCC
Confidence 5 888885 8999987654
No 192
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=21.69 E-value=1e+02 Score=24.60 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=9.9
Q ss_pred eEEEEecCC----CceEEEEe
Q 012109 27 PMRFVWPYG----GRSVFLSG 43 (471)
Q Consensus 27 ~~~f~~~~~----~~~V~v~G 43 (471)
+++|+|.+. ...+.+.+
T Consensus 44 ~V~~~~~N~~~~~~H~~~i~~ 64 (139)
T 2aan_A 44 TVTIRFKNNSAVQQHNWILVK 64 (139)
T ss_dssp EEEEEEECCCSSCCBCCEEES
T ss_pred EEEEEEEeCCCCCCeeEEEec
Confidence 466666554 45666655
No 193
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=20.67 E-value=1.5e+02 Score=23.04 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=38.2
Q ss_pred eeEEEEeCCCCHHHHHHHHHHcCCcccc---cccCCC-----CeeeeecchHHHHHHHHHhc
Q 012109 156 LQVVALDIDLPVKQAFHILYEQGISMAP---LWDFSK-----ARFVGVLSASDFILILRELG 209 (471)
Q Consensus 156 ~~vi~l~~~~sv~~A~~~m~~~~i~~~p---V~d~~~-----~~~vGilt~~Di~~~l~~~~ 209 (471)
..++.++.+..-.+.-.+..+.++.++| ++|.+. .++.|.++..++.+++.+..
T Consensus 66 ~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~ 127 (134)
T 2fwh_A 66 TVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ 127 (134)
T ss_dssp SEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred cEEEEEeCCCCcchHHHHHHHcCCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence 4477888776555666677788888888 555442 23568999999998887653
No 194
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=20.62 E-value=74 Score=22.94 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=7.5
Q ss_pred eEEEEecC-CCceEEEE
Q 012109 27 PMRFVWPY-GGRSVFLS 42 (471)
Q Consensus 27 ~~~f~~~~-~~~~V~v~ 42 (471)
+++|.+.. ....|.+.
T Consensus 28 ~V~~~n~~~~~H~v~~~ 44 (91)
T 1bxv_A 28 TVQWVNNKLAPHNVVVE 44 (91)
T ss_dssp EEEEEECSSCCEEEEET
T ss_pred EEEEEECCCCCcEEEEe
Confidence 44555554 23445443
No 195
>1idp_A Scytalone dehydratase; lyase, melanine biosynthesis; 1.45A {Magnaporthe grisea} SCOP: d.17.4.1 PDB: 2std_A* 1std_A* 3std_A* 6std_A* 4std_A* 5std_A* 7std_A*
Probab=20.57 E-value=32 Score=29.14 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=19.9
Q ss_pred ceEEEEEE-ECCEEeeCCCCCeeeCCCCCeeeEE
Q 012109 73 GYHQYKFC-VDGEWRHDEHQPFISSEYGIVNTVL 105 (471)
Q Consensus 73 g~~~ykf~-vdg~w~~d~~~~~~~~~~g~~nn~~ 105 (471)
|.|+++|. +||.|+...-.++..=..|+...|+
T Consensus 129 G~Y~~~Y~r~dG~WkIa~~~~~~~w~~~~~~~~~ 162 (172)
T 1idp_A 129 SANLHWYKKIDGVWKFAGLKPDIRWGEFDFDRIA 162 (172)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEC-------
T ss_pred ccceEEEEEECCEEEEEEEEEEEEEEecCHHHcc
Confidence 67899998 6999999877776443334443333
No 196
>1pgx_A Protein G; immunoglobulin binding protein; 1.66A {Streptococcus} SCOP: d.15.7.1
Probab=20.53 E-value=32 Score=24.38 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=10.8
Q ss_pred ECCEEeeCCCCCe
Q 012109 81 VDGEWRHDEHQPF 93 (471)
Q Consensus 81 vdg~w~~d~~~~~ 93 (471)
|||+|.+|+.-.+
T Consensus 52 vdgeWsYD~ATkT 64 (83)
T 1pgx_A 52 VDGVWTYDDATKT 64 (83)
T ss_dssp CCEEEEEETTTTE
T ss_pred CCceEeeccccee
Confidence 5889999998874
Done!