BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012110
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 582 bits (1501), Expect = e-166, Method: Compositional matrix adjust.
Identities = 291/427 (68%), Positives = 333/427 (77%), Gaps = 6/427 (1%)
Query: 31 VRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQY 90
VRI LKK +D N+R+A L + L + N LR E+ DIVALKNYM+AQY
Sbjct: 1 VRIALKKRPIDRNSRVATGLSGGEEQPLLSGA------NPLRSEEEGDIVALKNYMNAQY 54
Query: 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESASI 150
+GEIG+GTPPQKFTVIFDTGSSNLWVPS CYFS+ACY H NG+ A+I
Sbjct: 55 FGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAI 114
Query: 151 QYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNA 210
QYGTG+IAG+FS DSV VGDLVVKDQEFIEAT+EPG+TF+VAKFDGILGLGF+EISVG A
Sbjct: 115 QYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKA 174
Query: 211 VPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQ 270
VPVWY M++QGL+ DPVFSFWLNR+ E EGGEI+FGG+DP HY G+HTYVPVTQKGYWQ
Sbjct: 175 VPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQ 234
Query: 271 FNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVE 330
F+MGDVL+GGK TG+CAGGC+AIADSGTSLLAGPT +IT IN IGA+GVVSQ+CK +V
Sbjct: 235 FDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVS 294
Query: 331 QYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSA 390
QYGQ ILDLLL E PKKICSQ+GLCTFDG RGVS GI SVVD+ KS+G+ + MCSA
Sbjct: 295 QYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSA 354
Query: 391 CEMAVVWMXXXXXXXXXXXXXXXYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKV 450
CEMAVVWM YVN+LC+R+PSPMGESAVDCG L SMP + FTIGGK
Sbjct: 355 CEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKK 414
Query: 451 FDLSPEE 457
F L PEE
Sbjct: 415 FALKPEE 421
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 153/240 (63%), Positives = 178/240 (74%), Gaps = 4/240 (1%)
Query: 79 IVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXX 138
+VAL N D Y+GEIGIGTPPQKFTVIFDTGSS LWVPS+ C S AC H
Sbjct: 4 VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDS 63
Query: 139 XXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGIL 198
NG +I YGTG+I GFFS DSV +GDLVVK+Q+FIEAT E F+ FDGIL
Sbjct: 64 STYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGIL 123
Query: 199 GLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKH 258
GL FQ ISV PVWYNM+ QGL+++ FSFWLNRN E+EGGE+VFGG+DPNH++G H
Sbjct: 124 GLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 259 TYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
TYVPVT + YWQF +GDVLIG K TG+CA GC A ADSGTSLL+GPT ++T INHAIGA+
Sbjct: 180 TYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 239
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 154/239 (64%), Gaps = 2/239 (0%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L NY+D +Y+G I IG+PPQ FTVIFDTGSSNLWVPS C S AC H
Sbjct: 17 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT-SPACKTHSRFQPSQSSTY 75
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
G+S SIQYGTG+++G D V V L V Q+F E+ EPG TF+ A+FDGILGLG
Sbjct: 76 SQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLG 135
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ ++VG PV+ NM+ Q L+ P+FS +++ N + G E++FGG D +H+ G +V
Sbjct: 136 YPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWV 195
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGV 320
PVT++ YWQ + ++ +GG +C+ GC AI D+GTSL+ GP+ I + +AIGA+ V
Sbjct: 196 PVTKQAYWQIALDNIQVGGT-VMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPV 253
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE AV+C L+ MP V+FTI G + LSP
Sbjct: 255 GEYAVECANLNVMPDVTFTINGVPYTLSP 283
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 150/233 (64%), Gaps = 2/233 (0%)
Query: 85 YMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXN 144
YMDA Y+GEI IGTPPQ F V+FDTGSSNLWVPS C S AC H N
Sbjct: 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTN 67
Query: 145 GESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQE 204
G++ S+QYG+G++ GFF YD++ V + V +QEF + EPG F+ A+FDGI+GL +
Sbjct: 68 GQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPA 127
Query: 205 ISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVT 264
+SV A MV++G + PVFS +L+ NQQ GG +VFGGVD + Y G+ + PVT
Sbjct: 128 LSVDEATTAMQGMVQEGALTSPVFSVYLS-NQQGSSGGAVVFGGVDSSLYTGQIYWAPVT 186
Query: 265 QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGA 317
Q+ YWQ + + LIGG+ +G+C+ GC AI D+GTSLL P ++ + A GA
Sbjct: 187 QELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGA 239
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 166/294 (56%), Gaps = 20/294 (6%)
Query: 32 RIGLKKM-----KLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYM 86
RI LK+M L ARL E + ++ L T V L NYM
Sbjct: 10 RIFLKRMPSIRESLKERGVDMARLGPEWSQPMK----------RLTLGNTTSSVILTNYM 59
Query: 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXXXXXXXXXXNG 145
D QYYGEIGIGTPPQ F V+FDTGSSN+WVPS+ C AC +H NG
Sbjct: 60 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNG 119
Query: 146 ESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEI 205
+++Y TG ++GF S D + VG + V Q F E T P + FM+A+FDG++G+GF E
Sbjct: 120 TELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQ 178
Query: 206 SVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE--GGEIVFGGVDPNHYKGKHTYVPV 263
++G P++ N++ QG++++ VFSF+ NR+ + + GG+IV GG DP HY+G Y+ +
Sbjct: 179 AIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINL 238
Query: 264 TQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGA 317
+ G WQ M V +G T C GC A+ D+G S ++G T+ I + A+GA
Sbjct: 239 IKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA 291
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 151/244 (61%), Gaps = 5/244 (2%)
Query: 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXX 135
T V L NYMD QYYGEIGIGTPPQ F V+FDTGSSN+WVPS+ C AC +H
Sbjct: 3 TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA 62
Query: 136 XXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFD 195
NG +++Y TG ++GF S D + VG + V Q F E T P + FM+A+FD
Sbjct: 63 SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFD 121
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE--GGEIVFGGVDPNH 253
G++G+GF E ++G P++ N++ QG++++ VFSF+ NR+ + + GG+IV GG DP H
Sbjct: 122 GVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQH 181
Query: 254 YKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313
Y+G Y+ + + G WQ M V +G T C GC A+ D+G S ++G T+ I +
Sbjct: 182 YEGNFHYINLIKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASYISGSTSSIEKLME 240
Query: 314 AIGA 317
A+GA
Sbjct: 241 ALGA 244
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 151/244 (61%), Gaps = 5/244 (2%)
Query: 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXX 135
T V L NYMD QYYGEIGIGTPPQ F V+FDTGSSN+WVPS+ C AC +H
Sbjct: 7 TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA 66
Query: 136 XXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFD 195
NG +++Y TG ++GF S D + VG + V Q F E T P + FM+A+FD
Sbjct: 67 SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFD 125
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE--GGEIVFGGVDPNH 253
G++G+GF E ++G P++ N++ QG++++ VFSF+ NR+ + + GG+IV GG DP H
Sbjct: 126 GVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQH 185
Query: 254 YKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313
Y+G Y+ + + G WQ M V +G T C GC A+ D+G S ++G T+ I +
Sbjct: 186 YEGNFHYINLIKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASYISGSTSSIEKLME 244
Query: 314 AIGA 317
A+GA
Sbjct: 245 ALGA 248
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 151/244 (61%), Gaps = 5/244 (2%)
Query: 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXX 135
T V L NYMD QYYGEIGIGTPPQ F V+FDTGSSN+WVPS+ C AC +H
Sbjct: 7 TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA 66
Query: 136 XXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFD 195
NG +++Y TG ++GF S D + VG + V Q F E T P + FM+A+FD
Sbjct: 67 SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFD 125
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE--GGEIVFGGVDPNH 253
G++G+GF E ++G P++ N++ QG++++ VFSF+ NR+ + + GG+IV GG DP H
Sbjct: 126 GVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQH 185
Query: 254 YKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313
Y+G Y+ + + G WQ M V +G T C GC A+ D+G S ++G T+ I +
Sbjct: 186 YEGNFHYINLIKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASYISGSTSSIEKLME 244
Query: 314 AIGA 317
A+GA
Sbjct: 245 ALGA 248
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 218 bits (554), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 151/244 (61%), Gaps = 5/244 (2%)
Query: 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXX 135
T V L NYMD QYYGEIGIGTPPQ F V+FDTGSSN+WVPS+ C AC +H
Sbjct: 4 TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA 63
Query: 136 XXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFD 195
NG +++Y TG ++GF S D + VG + V Q F E T P + FM+A+FD
Sbjct: 64 SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFD 122
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE--GGEIVFGGVDPNH 253
G++G+GF E ++G P++ N++ QG++++ VFSF+ NR+ + + GG+IV GG DP H
Sbjct: 123 GVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQH 182
Query: 254 YKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313
Y+G Y+ + + G WQ M V +G T C GC A+ D+G S ++G T+ I +
Sbjct: 183 YEGNFHYINLIKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASYISGSTSSIEKLME 241
Query: 314 AIGA 317
A+GA
Sbjct: 242 ALGA 245
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 150/241 (62%), Gaps = 5/241 (2%)
Query: 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXXXXX 138
V L NYMD QYYGEIGIGTPPQ F V+FDTGSSN+WVPS+ C AC +H
Sbjct: 3 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 62
Query: 139 XXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGIL 198
NG +++Y TG ++GF S D + VG + V Q F E T P + FM+A+FDG++
Sbjct: 63 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 121
Query: 199 GLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE--GGEIVFGGVDPNHYKG 256
G+GF E ++G P++ N++ QG++++ VFSF+ NR+ + + GG+IV GG DP HY+G
Sbjct: 122 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 181
Query: 257 KHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIG 316
Y+ + + G WQ M V +G T C GC A+ D+G S ++G T+ I + A+G
Sbjct: 182 NFHYINLIKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 240
Query: 317 A 317
A
Sbjct: 241 A 241
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 149/242 (61%), Gaps = 6/242 (2%)
Query: 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXX 135
T V L NYMD QYYGEIGIGTPPQ F V+FDTGSSN+WVPS+ C AC +H
Sbjct: 7 TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA 66
Query: 136 XXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFD 195
NG +++Y TG ++GF S D + VG + V Q F E T P + FM+A+FD
Sbjct: 67 SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFD 125
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYK 255
G++G+GF E ++G P++ N++ QG++++ VFSF+ NR+ GG+IV GG DP HY+
Sbjct: 126 GVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSL---GGQIVLGGSDPQHYE 182
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAI 315
G Y+ + + G WQ M V +G T C GC A+ D+G S ++G T+ I + A+
Sbjct: 183 GNFHYINLIKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASYISGSTSSIEKLMEAL 241
Query: 316 GA 317
GA
Sbjct: 242 GA 243
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 150/239 (62%), Gaps = 4/239 (1%)
Query: 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXX 139
V L NY++AQYY +I +GTPPQ F VI DTGSSNLWVPS C S+AC+ H
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 140 XXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILG 199
NG +IQYGTG++ G+ S D++ +GDL + Q+F EAT EPG+TF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 200 LGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE-GGEIVFGGVDPNHYKGKH 258
LG+ ISV VP +YN ++Q L+ + F+F+L ++ E GGE FGG+D + +KG
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 259 TYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGA 317
T++PV +K YW+ + +G + + G A D+GTSL+ P+ + MIN IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG--AAIDTGTSLITLPSGLAEMINAEIGA 240
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 214 bits (545), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 150/239 (62%), Gaps = 4/239 (1%)
Query: 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXX 139
V L NY++AQYY +I +GTPPQ F VI DTGSSNLWVPS C S+AC+ H
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 140 XXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILG 199
NG +IQYGTG++ G+ S D++ +GDL + Q+F EAT EPG+TF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 200 LGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE-GGEIVFGGVDPNHYKGKH 258
LG+ ISV VP +YN ++Q L+ + F+F+L ++ E GGE FGG+D + +KG
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 259 TYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGA 317
T++PV +K YW+ + +G + + G A D+GTSL+ P+ + MIN IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG--AAIDTGTSLITLPSGLAEMINAEIGA 240
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 214 bits (545), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 150/239 (62%), Gaps = 4/239 (1%)
Query: 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXX 139
V L NY++AQYY +I +GTPPQ F VI DTGSSNLWVPS C S+AC+ H
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 140 XXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILG 199
NG +IQYGTG++ G+ S D++ +GDL + Q+F EAT EPG+TF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 200 LGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE-GGEIVFGGVDPNHYKGKH 258
LG+ ISV VP +YN ++Q L+ + F+F+L ++ E GGE FGG+D + +KG
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 259 TYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGA 317
T++PV +K YW+ + +G + + G A D+GTSL+ P+ + MIN IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG--AAIDTGTSLITLPSGLAEMINAEIGA 240
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 149/239 (62%), Gaps = 4/239 (1%)
Query: 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXXXXX 138
V L NY+++QYYGEIGIGTPPQ F VIFDTGS+NLWVPST C +AC H
Sbjct: 7 VVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDS 66
Query: 139 XXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGIL 198
NG+ +I YG+G + GF S DSV VG + V Q F E T+ P + FM+A+FDG+L
Sbjct: 67 SSYMENGDDFTIHYGSGRVKGFLSQDSVTVGGITVT-QTFGEVTQLPLIPFMLAQFDGVL 125
Query: 199 GLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKH 258
G+GF +VG PV+ +++ QG++++ VFS + NR GGE+V GG DP HY+G
Sbjct: 126 GMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHL-LGGEVVLGGSDPQHYQGDF 184
Query: 259 TYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGA 317
YV +++ WQ M V +G T C GC + D+G+S ++ PT+ + +I A+GA
Sbjct: 185 HYVSLSKTDSWQITMKGVSVGSS-TLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGA 242
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 426 MGESAVDCGKLSSMPIVSFTIGGKVFDLS 454
+ E V C ++ ++P +SF +GG+ + LS
Sbjct: 247 LHEYVVSCSQVPTLPDISFNLGGRAYTLS 275
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 145/237 (61%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L+NY+D +Y+G IGIGTP Q FTVIFDTGSSNLWVPS C S+AC H
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 108
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
+ SI YGTG++ G YD+V+VG + +Q F + EPG A FDGILGL
Sbjct: 109 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 168
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ IS A PV+ N+ QGL+ +FS +L+ N +D G ++ GG+D ++Y G +V
Sbjct: 169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 226
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PV+ +GYWQ + + + G+ T C+GGC AI D+GTSLL GPT+ I I IGAS
Sbjct: 227 PVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE + C + S+P + FTI G + LSP
Sbjct: 287 GEMVISCSSIDSLPDIVFTIDGVQYPLSP 315
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 208 bits (529), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 145/237 (61%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L+NY+D +Y+G IGIGTP Q FTVIFDTGSSNLWVPS C S+AC H
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
+ SI YGTG++ G YD+V+VG + +Q F + EPG A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ IS A PV+ N+ QGL+ +FS +L+ N +D G ++ GG+D ++Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PV+ +GYWQ + + + G+ T C+GGC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE + C ++S+P + FTI G + LSP
Sbjct: 243 GEMVISCSSIASLPDIVFTINGVQYPLSP 271
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 208 bits (529), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 145/237 (61%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L+NY+D +Y+G IGIGTP Q FTVIFDTGSSNLWVPS C S+AC H
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 108
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
+ SI YGTG++ G YD+V+VG + +Q F + EPG A FDGILGL
Sbjct: 109 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 168
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ IS A PV+ N+ QGL+ +FS +L+ N +D G ++ GG+D ++Y G +V
Sbjct: 169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 226
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PV+ +GYWQ + + + G+ T C+GGC AI D+GTSLL GPT+ I I IGAS
Sbjct: 227 PVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE + C + S+P + FTI G + LSP
Sbjct: 287 GEMVISCSSIDSLPDIVFTIDGVQYPLSP 315
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 208 bits (529), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 145/237 (61%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L+NY+D +Y+G IGIGTP Q FTVIFDTGSSNLWVPS C S+AC H
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
+ SI YGTG++ G YD+V+VG + +Q F + EPG A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ IS A PV+ N+ QGL+ +FS +L+ N +D G ++ GG+D ++Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PV+ +GYWQ + + + G+ T C+GGC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE + C + S+P + FTI G + LSP
Sbjct: 243 GEMVISCSSIDSLPDIVFTIDGVQYPLSP 271
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 145/237 (61%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L+NY+D +Y+G IGIGTP Q FTVIFDTGSSNLWVPS C S+AC H
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
+ SI YGTG++ G YD+V+VG + +Q F + EPG A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ IS A PV+ N+ QGL+ +FS +L+ N +D G ++ GG+D ++Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PV+ +GYWQ + + + G+ T C+GGC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE + C + S+P + FTI G + LSP
Sbjct: 243 GEMVISCSSIDSLPDIVFTINGVQYPLSP 271
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 207 bits (527), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 145/237 (61%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L+NY+D +Y+G IGIGTP Q FTVIFDTGSSNLWVPS C S+AC H
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
+ SI YGTG++ G YD+V+VG + +Q F + EPG A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ IS A PV+ N+ QGL+ +FS +L+ N +D G ++ GG+D ++Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PV+ +GYWQ + + + G+ T C+GGC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE + C + S+P + FTI G + LSP
Sbjct: 243 GEMVISCSSIDSLPDIVFTIDGVQYPLSP 271
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 145/237 (61%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L+NY+D +Y+G IGIGTP Q FTVIFDTGSSNLWVPS C S+AC H
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
+ SI YGTG++ G YD+V+VG + +Q F + EPG A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ IS A PV+ N+ QGL+ +FS +L+ N +D G ++ GG+D ++Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PV+ +GYWQ + + + G+ T C+GGC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE + C + S+P + FTI G + LSP
Sbjct: 243 GEMVISCSSIDSLPDIVFTINGVQYPLSP 271
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 144/237 (60%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L+NY+D +Y+G IGIGTP Q FTV+FDTGSSNLWVPS C S+AC H
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
E+ SI YGTG++ G YD+V+VG + +Q F + EPG A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ IS A PV+ N+ QGL+ +FS +L+ + Q G ++FGG+D ++Y G +V
Sbjct: 125 YPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQ--SGSVVIFGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PVT +GYWQ + + + G+ CA GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 238
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 144/237 (60%), Gaps = 4/237 (1%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L+NY+D +Y+G IGIGTP Q FTV+FDTGSSNLWVPS C S+AC H
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
E+ SI YGTG++ G YD+V+VG + +Q F + EPG A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ IS A PV+ N+ QGL+ +FS +L+ + Q G ++FGG+D ++Y G +V
Sbjct: 125 YPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQ--SGSVVIFGGIDSSYYTGSLNWV 182
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PVT +GYWQ + + + G+ CA GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 238
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 198 bits (504), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 148/237 (62%), Gaps = 5/237 (2%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
L +Y+D+QY+G+I IGTPPQ+FTV+FDTGSS+LWVPS C +V C H
Sbjct: 5 LTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNV-CKNHHRFDPRKSSTF 63
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
G+ SI YGTG++ GF YD+V V ++V +Q +T +PG F ++FDGILGL
Sbjct: 64 RNLGKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLA 123
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ ++ +VPV+ NM+ + L+ +FS +++RN Q G + G +DP++Y G +V
Sbjct: 124 YPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQ---GSMLTLGAIDPSYYTGSLHWV 180
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PVT + YWQF + V I G C GGC AI D+GTS+L GP++ I I AIGA+
Sbjct: 181 PVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPSSDILKIQMAIGAT 236
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE V+CG L SMP V F I G+ + LSP
Sbjct: 241 GEFDVNCGNLRSMPTVVFEINGRDYPLSP 269
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 146/239 (61%), Gaps = 5/239 (2%)
Query: 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXX 139
V L NY+D+QY+G+I +GTPPQ+FTV+FDTGSS+ WVPS C S AC H
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 140 XXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILG 199
G+ SI YGTG++ G YD+V V ++V Q +T+EPG F A+FDGILG
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILG 124
Query: 200 LGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHT 259
+ + ++ ++PV+ NM+ + L+ +FS +++RN QE + G +DP++Y G
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQE---SMLTLGAIDPSYYTGSLH 181
Query: 260 YVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
+VPVT + YWQF + V I G C GGC AI D+GTS L GP++ I I AIGA+
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT 239
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE +DC LS MP V F I GK++ L+P
Sbjct: 244 GEFDIDCDNLSYMPTVVFEINGKMYPLTP 272
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 146/239 (61%), Gaps = 5/239 (2%)
Query: 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXX 139
V L NY+D+QY+G+I +GTPPQ+FTV+FDTGSS+ WVPS C S AC H
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 140 XXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILG 199
G+ SI YGTG++ G YD+V V ++V Q +T+EPG F A+FDGILG
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILG 124
Query: 200 LGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHT 259
+ + ++ ++PV+ NM+ + L+ +FS +++RN QE + G +DP++Y G
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQE---SMLTLGAIDPSYYTGSLH 181
Query: 260 YVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
+VPVT + YWQF + V I G C GGC AI D+GTS L GP++ I I AIGA+
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT 239
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSP 455
GE +DC LS MP V F I GK++ L+P
Sbjct: 244 GEFDIDCDNLSYMPTVVFEINGKMYPLTP 272
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 134/237 (56%), Gaps = 5/237 (2%)
Query: 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXX 141
+KN D +YYG I IGTPP+ F VIFDTGSSNLWV S++C + AC H
Sbjct: 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTY 64
Query: 142 XXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
G++ + YGTG + G D+V VG +QE E+ EPG A FDGILGL
Sbjct: 65 VETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLA 124
Query: 202 FQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
+ I+ AVPV+ NM Q L++ +FSF+L+ G E++ GGVD +HY G ++
Sbjct: 125 YPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGA--NGSEVMLGGVDNSHYTGSIHWI 182
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
PVT + YWQ + + + G+ T C GC AI D+GTS + P + + I IGAS
Sbjct: 183 PVTAEKYWQVALDGITVNGQ-TAACE-GCQAIVDTGTSKIVAPVSALANIMKDIGAS 237
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 104/160 (65%), Gaps = 2/160 (1%)
Query: 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXX 135
T V L NYMD QYYGEIGIGTPPQ F V+FDTGSSN+WVPS+ C AC +H
Sbjct: 7 TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA 66
Query: 136 XXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFD 195
NG +++Y TG ++GF S D + VG + V Q F E T P + FM+A+FD
Sbjct: 67 SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFD 125
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRN 235
G++G+GF E ++G P++ N++ QG++++ VFSF+ NR+
Sbjct: 126 GVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 165
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 169 GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVF 228
G + V+ Q F EAT++PG+TF+ AKFDGILG+ + ISV N +PV+ N+++Q L+ +F
Sbjct: 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60
Query: 229 SFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAG 288
SF+L+R+ GGE++ GG D +YKG +Y+ VT+K YWQ ++ V + T C
Sbjct: 61 SFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKE 119
Query: 289 GCSAIADSGTSLLAGPTTVITMINHAIGA 317
GC AI D+GTSL+ GP + + AIGA
Sbjct: 120 GCEAIVDTGTSLMVGPVDEVRELQKAIGA 148
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 422 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEE 457
+P GE + C K+S++P ++ +GGK + LSPE+
Sbjct: 149 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPED 184
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 127/235 (54%), Gaps = 11/235 (4%)
Query: 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXX 135
+ D + L + + +YGE IGT Q F IFDTGS+NLWVPS NC S+ C
Sbjct: 2 ENDSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCD-SIGCSTKHLYDA 60
Query: 136 XXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAK 193
+G I YG+G + G+FS D + +GDL + +FIE T + + ++
Sbjct: 61 SASKSYEKDGTKVEISYGSGTVRGYFSKDVISLGDLSLP-YKFIEVTDADDLEPIYSGSE 119
Query: 194 FDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNH 253
FDGILGLG++++S+G+ PV + KQ I + +F+F+L + + G + GG++ +
Sbjct: 120 FDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPVHDK--HVGYLTIGGIESDF 177
Query: 254 YKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVI 308
Y+G TY + YWQ ++ D+ G Y +A+ DSGTS + PT+ +
Sbjct: 178 YEGPLTYEKLNHDLYWQIDL-DIHFG----KYVMQKANAVVDSGTSTITAPTSFL 227
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 11/235 (4%)
Query: 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXX 135
+ D++ L + + +YGE +G QKF +IFDTGS+NLWVPS C S+ C
Sbjct: 2 ENDVIELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SIGCSTKHLYDS 60
Query: 136 XXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVT--FMVAK 193
+G I YG+G + GFFS D V +G L + +FIE T + + A+
Sbjct: 61 SKSKSYEKDGTKVEITYGSGTVRGFFSKDLVTLGYLSLP-YKFIEVTDTDDLEPLYTAAE 119
Query: 194 FDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNH 253
FDGILGLG++++S+G+ P+ + Q I +F+F+L + + G + GG++
Sbjct: 120 FDGILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPVHDK--HSGYLTIGGIEEKF 177
Query: 254 YKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVI 308
Y+G+ TY + +WQ ++ DV G + I DSGTS + PT+ I
Sbjct: 178 YEGELTYEKLNHDLFWQVDL-DVNFGKT----SMEKANVIVDSGTSTITAPTSFI 227
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 11/233 (4%)
Query: 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXX 137
D V L + + YYGE IG QKF IFDTGS+NLWVPS C ++ C
Sbjct: 11 DSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNK 69
Query: 138 XXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFD 195
+G + Y +G ++GFFS D V + +L +FIE T G + + +FD
Sbjct: 70 SKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFP-YKFIEVTDTNGFEPAYTLGQFD 128
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYK 255
GI+GLG++++S+G+ PV + Q I+ VF+F+L + + G + GG++ Y+
Sbjct: 129 GIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFDDKHK--GYLTIGGIEDRFYE 186
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVI 308
G+ TY + YWQ ++ D+ G +AI DSGTS + PT +
Sbjct: 187 GQLTYEKLNHDLYWQVDL-DLHFG----NLTVEKATAIVDSGTSSITAPTEFL 234
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 137/280 (48%), Gaps = 27/280 (9%)
Query: 46 LAARLESEHGEALRASVKKYGFPNNLRDS---------------EDTDIVALKNYMDAQY 90
LA ++E + + L+ ++ K N ++++ + D++ L + + +
Sbjct: 6 LAFKIERPYDKVLK-TISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMF 64
Query: 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESASI 150
YGE +G QKF +IFDTGS+NLWVPS C S C +G I
Sbjct: 65 YGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDI 123
Query: 151 QYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFDGILGLGFQEISVG 208
YG+G + GFFS D V +G L + +FIE T + + +FDGILGLG++++S+G
Sbjct: 124 TYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIG 182
Query: 209 NAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGY 268
+ P+ + Q I + +F+F+L + G + GG++ Y+G TY + Y
Sbjct: 183 SIDPIVVELKNQNKIDNALFTFYLPV--HDVHAGYLTIGGIEEKFYEGNITYEKLNHDLY 240
Query: 269 WQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVI 308
WQ ++ DV G + + I DSGT+ + P+ +
Sbjct: 241 WQIDL-DVHFGKQ----TMEKANVIVDSGTTTITAPSEFL 275
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 120/235 (51%), Gaps = 11/235 (4%)
Query: 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXX 135
+ D++ L + + +YGE +G QKF +IFDTGS+NLWVPS C S C
Sbjct: 4 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDS 62
Query: 136 XXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEA--TREPGVTFMVAK 193
+G I YG+G + GFFS D V +G L + +FIE T + + +
Sbjct: 63 SKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVIDTDDLEPIYSSVE 121
Query: 194 FDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNH 253
FDGILGLG++++S+G+ P+ + Q I + +F+F+L + G + GG++
Sbjct: 122 FDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDV--HAGYLTIGGIEEKF 179
Query: 254 YKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVI 308
Y+G TY + YWQ ++ DV G + + I DSGT+ + P+ +
Sbjct: 180 YEGNITYEKLNHDLYWQIDL-DVHFGKQ----TMEKANVIVDSGTTTITAPSEFL 229
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 135/280 (48%), Gaps = 27/280 (9%)
Query: 46 LAARLESEHGEALRASVKKYGFPNNLRDS---------------EDTDIVALKNYMDAQY 90
+ ++E+ H L+ ++K + N +++S D + L ++ + +
Sbjct: 82 IGFKVENAHDRILK-TIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMF 140
Query: 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESASI 150
YG+ +G Q FT I DTGS+NLWVPS C + C +G +
Sbjct: 141 YGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEM 199
Query: 151 QYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFDGILGLGFQEISVG 208
Y +G ++GFFS D V VG+L + +FIE G T+ + FDGILGLG++++S+G
Sbjct: 200 NYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIG 258
Query: 209 NAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGY 268
+ P+ + Q I++ +F+F+L + + G + GG++ Y+G TY + Y
Sbjct: 259 SVDPIVVELKNQNKIENALFTFYLPVHDK--HTGFLTIGGIEERFYEGPLTYEKLNHDLY 316
Query: 269 WQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVI 308
WQ + D +G + I DSGTS + PT +
Sbjct: 317 WQITL-DAHVG----NIMLEKANCIVDSGTSAITVPTDFL 351
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 133/274 (48%), Gaps = 27/274 (9%)
Query: 49 RLESEHGEALRASVKKYGFPNNLRDS---------------EDTDIVALKNYMDAQYYGE 93
++E+ H L+ ++K + N +++S D + L ++ + +YG+
Sbjct: 12 KVENAHDRILK-TIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYGD 70
Query: 94 IGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESASIQYG 153
+G Q FT I DTGS+NLWVPS C + C +G + Y
Sbjct: 71 AEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEMNYV 129
Query: 154 TGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFDGILGLGFQEISVGNAV 211
+G ++GFFS D V VG+L + +FIE G T+ + FDGILGLG++++S+G+
Sbjct: 130 SGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVD 188
Query: 212 PVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQF 271
P+ + Q I++ +F+F+L + + G + GG++ Y+G TY + YWQ
Sbjct: 189 PIVVELKNQNKIENALFTFYLPVHDK--HTGFLTIGGIEERFYEGPLTYEKLNHDLYWQI 246
Query: 272 NMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPT 305
+ D +G + I DSGTS + PT
Sbjct: 247 TL-DAHVG----NIMLEKANCIVDSGTSAITVPT 275
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 11/230 (4%)
Query: 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXX 137
D + L ++ + +YG+ +G Q FT I DTGS+NLWVPS C + C
Sbjct: 6 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 64
Query: 138 XXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFD 195
+G + Y +G ++GFFS D V VG+L + +FIE G T+ + FD
Sbjct: 65 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 123
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYK 255
GILGLG++++S+G+ P+ + Q I++ +F+F+L + + G + GG++ Y+
Sbjct: 124 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDK--HTGFLTIGGIEERFYE 181
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPT 305
G TY + YWQ + D +G + I DSGTS + PT
Sbjct: 182 GPLTYEKLNHDLYWQITL-DAHVG----NIMLEKANCIVDSGTSAITVPT 226
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 11/230 (4%)
Query: 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXX 137
D + L ++ + +YG+ +G Q FT I DTGS+NLWVPS C + C
Sbjct: 6 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 64
Query: 138 XXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFD 195
+G + Y +G ++GFFS D V VG+L + +FIE G T+ + FD
Sbjct: 65 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 123
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYK 255
GILGLG++++S+G+ P+ + Q I++ +F+F+L + + G + GG++ Y+
Sbjct: 124 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDK--HTGFLTIGGIEERFYE 181
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPT 305
G TY + YWQ + D +G + I DSGTS + PT
Sbjct: 182 GPLTYEKLNHDLYWQITL-DAHVG----NISLEKANCIVDSGTSAITVPT 226
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 11/230 (4%)
Query: 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXX 137
D + L ++ + +YG+ +G Q FT I DTGS+NLWVPS C + C
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 138 XXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFD 195
+G + Y +G ++GFFS D V VG+L + +FIE G T+ + FD
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 121
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYK 255
GILGLG++++S+G+ P+ + Q I++ +F+F+L + + G + GG++ Y+
Sbjct: 122 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDK--HTGFLTIGGIEERFYE 179
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPT 305
G TY + YWQ + D +G + I DSGTS + PT
Sbjct: 180 GPLTYEKLNHDLYWQITL-DAHVG----NISLEKANCIVDSGTSAITVPT 224
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 11/230 (4%)
Query: 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXX 137
D + L ++ + +YG+ +G Q FT I DTGS+NLWVPS C + C
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 138 XXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFD 195
+G + Y +G ++GFFS D V VG+L + +FIE G T+ + FD
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 121
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYK 255
GILGLG++++S+G+ P+ + Q I++ +F+F+L + + G + GG++ Y+
Sbjct: 122 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDK--HTGFLTIGGIEERFYE 179
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPT 305
G TY + YWQ + D +G + I DSGTS + PT
Sbjct: 180 GPLTYEKLNHDLYWQITL-DAHVG----NIMLEKANCIVDSGTSAITVPT 224
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 120/235 (51%), Gaps = 10/235 (4%)
Query: 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGE 146
D +YYG++ IGTP +KF + FDTGSS+LW+ ST C + +G
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSRQTKYDPNQSSTYQADGR 71
Query: 147 SASIQYGTGAIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEI 205
+ SI YG G+ A G + D+V +G L++K Q IE + +F DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTI 130
Query: 206 SVGNAVPV-WYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPV- 263
+ V N++ QGLI P+F +L + + GGE +FGG D +KG T VP+
Sbjct: 131 TTVRGVKTPMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPID 189
Query: 264 TQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
+G+W + +G T A I D+GT+LL P + + A GAS
Sbjct: 190 NSRGWWGITVDRATVG---TSTVASSFDGILDTGTTLLILPNNIAASVARAYGAS 241
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 120/235 (51%), Gaps = 10/235 (4%)
Query: 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGE 146
D +YYG++ IGTP +KF + FDTGSS+LW+ ST C + +G
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSGQTKYDPNQSSTYQADGR 71
Query: 147 SASIQYGTGAIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEI 205
+ SI YG G+ A G + D+V +G L++K Q IE + +F DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTI 130
Query: 206 SVGNAVPV-WYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPV- 263
+ V N++ QGLI P+F +L + + GGE +FGG D +KG T VP+
Sbjct: 131 TTVRGVKTPMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPID 189
Query: 264 TQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318
+G+W + +G T A I D+GT+LL P + + A GAS
Sbjct: 190 NSRGWWGITVDRATVG---TSTVASSFDGILDTGTTLLILPNNIAASVARAYGAS 241
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 81 ALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC-YFSVACYFHXXXXXXXXX 139
LKNYMDAQYYGEIGIGTPPQ FTV+FDTGSSNLWVPS +C +AC+ H
Sbjct: 6 VLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSS 65
Query: 140 XXXXNGESASIQYGTGAIAGFFSYDSVKV 168
NG S I YG+G+++G+ S D+V V
Sbjct: 66 TYVKNGTSFDIHYGSGSLSGYLSQDTVSV 94
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 107/233 (45%), Gaps = 17/233 (7%)
Query: 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXX 137
D V LK+ + +GE +G QKF +F T SSN+WVPS C S +C
Sbjct: 8 DNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSK 66
Query: 138 XXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVT--FMVAKFD 195
+ + G I+G FS D V +G L V +FIE T G + + D
Sbjct: 67 SKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPFYSESDVD 125
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWL---NRNQQEDEGGEIVFGGVDPN 252
G+ GLG++++S+G+ P + Q I+ V+S +L N+N+ G + GG++
Sbjct: 126 GVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNK-----GYLTIGGIEER 180
Query: 253 HYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPT 305
+ G Y + WQ ++ DV G + + I DS TS++ PT
Sbjct: 181 FFDGPLNYEKLNHDLMWQVDL-DVHFG----NVSSKKANVILDSATSVITVPT 228
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 107/233 (45%), Gaps = 17/233 (7%)
Query: 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXX 137
D V LK+ + +GE +G QKF +F T SSN+WVPS C S +C
Sbjct: 127 DNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSK 185
Query: 138 XXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVT--FMVAKFD 195
+ + G I+G FS D V +G L V +FIE T G + + D
Sbjct: 186 SKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPFYSESDVD 244
Query: 196 GILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWL---NRNQQEDEGGEIVFGGVDPN 252
G+ GLG++++S+G+ P + Q I+ V+S +L N+N+ G + GG++
Sbjct: 245 GVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNK-----GYLTIGGIEER 299
Query: 253 HYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPT 305
+ G Y + WQ ++ DV G + + I DS TS++ PT
Sbjct: 300 FFDGPLNYEKLNHDLMWQVDL-DVHFG----NVSSKKANVILDSATSVITVPT 347
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 317 ASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESN 376
A +VS +CK +V QYG+ I DLL+ P ++CSQ GLC DG + VS I++VV+
Sbjct: 3 AMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERET 62
Query: 377 DKSSGVLNNAMCSACEMAVVWMXXXXXXXXXXXXXXXYVNELCDRMP 423
+ SS V +C+ACEMAVVWM YVN+LC+++P
Sbjct: 63 EGSS-VGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 107/251 (42%), Gaps = 18/251 (7%)
Query: 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESA 148
+Y + IGTP Q F ++FDTGSS+ WVP C S C +
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTFKATNYNL 78
Query: 149 SIQYGTGAIAGFFSYDSVKVGDLVVKDQ--EFIEATREPGVTFMVAK---FDGILGLGFQ 203
+I YGTG G + DS+ +GD+ V Q +++ R P DG+ G +
Sbjct: 79 NITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPNADIFLDGLFGAAYP 138
Query: 204 EISVGNAV------PVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGK 257
+ + A V N+ KQGLI P+FS ++N N GE+VFGGV+ G
Sbjct: 139 DNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNSGT---GEVVFGGVNNTLLGGD 195
Query: 258 HTYVPVTQK--GY--WQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313
Y V + GY W + + + G + + D+GT+ P++ + I
Sbjct: 196 IAYTDVMSRYGGYYFWDAPVTGITVDGSAAVRFSRPQAFTIDTGTNFFIMPSSAASKIVK 255
Query: 314 AIGASGVVSQQ 324
A +QQ
Sbjct: 256 AALPDATETQQ 266
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 33/224 (14%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
Y +G+G+P ++++ DTGSSN W+ + Y + + S
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTST-------------SSATSDKVS 60
Query: 150 IQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGN 209
+ YG+G+ +G D+V +G L + Q A+R+ G DGILG+G +++VG
Sbjct: 61 VTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSG----FDGVDGILGVGPVDLTVGT 116
Query: 210 AVP--------VWYNMVKQGLIQDPVFSFWLNRNQQEDE-GGEIVFGGVDPNHYKGKHTY 260
P V N+ QG I + + E GE+ FG D + Y G TY
Sbjct: 117 LSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITY 176
Query: 261 VPVTQ----KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSL 300
P+T YW N + G T + + I D+GT+L
Sbjct: 177 TPITSTSPASAYWGINQS--IRYGSSTSILS-STAGIVDTGTTL 217
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 29/242 (11%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVA--------CYFHXXXXXXXXXXX 141
Y +I +G+ QK VI DTGSS+LW+P +N C
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTS 73
Query: 142 XXNGESASIQYGTGAIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGL 200
I+YG G+ A G D+V +G + V+DQ F + + GILG+
Sbjct: 74 QNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV-------WSTSARKGILGI 126
Query: 201 GFQEISVGNAVPVWYN-----MVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYK 255
GFQ G A Y+ + QG+I +S +LN E G+I+FGG+D Y
Sbjct: 127 GFQS---GEATEFDYDNLPISLRNQGIIGKAAYSLYLN--SAEASTGQIIFGGIDKAKYS 181
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAI 315
G +P+T + + V + G+ + + DSGT++ +++ I +AI
Sbjct: 182 GSLVDLPITSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVRNILYAI 238
Query: 316 GA 317
GA
Sbjct: 239 GA 240
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVA--------CYFHXXXXXXXXXXX 141
Y +I +G+ QK TV+ DTGSS+LWV T+ V C
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 142 XXNGESASIQYGT-GAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGL 200
+ SI+YG + G F D+V G + +K+Q+F + T T V + GI+G+
Sbjct: 74 QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVT-----TTSVDQ--GIMGI 126
Query: 201 GFQEISVG----NAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKG 256
GF G + VPV + KQG+I +S +L N ++ G+I+FGGVD Y G
Sbjct: 127 GFTADEAGYNLYDNVPV--TLKKQGIINKNAYSLYL--NSEDASTGKIIFGGVDNAKYTG 182
Query: 257 KHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIG 316
T +PVT + ++G + G + + DSGT++ + +G
Sbjct: 183 TLTALPVTSSVELRVHLGSINFDGTS---VSTNADVVLDSGTTITYFSQSTADKFARIVG 239
Query: 317 AS 318
A+
Sbjct: 240 AT 241
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 100/223 (44%), Gaps = 25/223 (11%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESA- 148
Y +I +G+ QK VI DTGSS+LWVP N V +G SA
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 149 -------SIQYGTGAIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGL 200
SI YG G+ + G D+V G + +K+Q + + GILG+
Sbjct: 74 QDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDS-------TSIDQGILGV 126
Query: 201 GFQEISVG---NAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGK 257
G++ G + VPV + KQG+I +S +LN + G+I+FGGVD Y G
Sbjct: 127 GYKTNEAGGSYDNVPV--TLKKQGVIAKNAYSLYLNS--PDSATGQIIFGGVDNAKYSGS 182
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSL 300
+PVT + ++G V + GK + DSGT++
Sbjct: 183 LIALPVTSDRELRISLGSVEVSGKTIN--TDNVDVLLDSGTTI 223
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 100/223 (44%), Gaps = 25/223 (11%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
Y +I +G+ QK VI DTGSS+LWVP N V +G SAS
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 150 --------IQYGTGAIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGL 200
I YG G+ + G D+V G + +K+Q + + GILG+
Sbjct: 74 QDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDS-------TSIDQGILGV 126
Query: 201 GFQEISVG---NAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGK 257
G++ G + VPV + KQG+I +S +LN + G+I+FGGVD Y G
Sbjct: 127 GYKTNEAGGSYDNVPV--TLKKQGVIAKNAYSLYLNS--PDAATGQIIFGGVDNAKYSGS 182
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSL 300
+PVT + ++G V + GK + DSGT++
Sbjct: 183 LIALPVTSDRELRISLGSVEVSGKTIN--TDNVDVLLDSGTTI 223
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 28/251 (11%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ IGTPPQK ++ DTGSSN V T + + YF G +
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSY-IDTYFDTERSSTYRS----KGFDVT 69
Query: 150 IQYGTGAIAGFFSYDSVKV-----GDLVVKDQEFIEATR--EPGVTFMVAKFDGILGLGF 202
++Y G+ GF D V + +V E+ PG+ K++GILGL +
Sbjct: 70 VKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGI-----KWNGILGLAY 124
Query: 203 QEISV-GNAVPVWYN-MVKQGLIQDPVFSFW-----LNRNQQEDEGGEIVFGGVDPNHYK 255
++ +++ +++ +V Q I + VFS L GG +V GG++P+ YK
Sbjct: 125 ATLAKPSSSLETFFDSLVTQANIPN-VFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYK 183
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGY-CA--GGCSAIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y+Q + + IGG+ C AI DSGT+LL P V +
Sbjct: 184 GDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVV 243
Query: 313 HAIGASGVVSQ 323
A+ + ++ +
Sbjct: 244 EAVARASLIPE 254
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 11/235 (4%)
Query: 85 YMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXN 144
+++ QY G IG Q F +FD+ S N+ V S C + +
Sbjct: 16 FINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISD 73
Query: 145 GESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQE 204
G + TG+ G DS+ + L Q+ + A E + D ++G+
Sbjct: 74 GNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLA-DELSQEVCILSADVVVGIA--A 130
Query: 205 ISVGNAVP---VWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
NA+ V N V++ LI PVFS R Q + GEI+FGG D + G+ TYV
Sbjct: 131 PGCPNALKGKTVLENFVEENLIA-PVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYV 189
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIG 316
P+ W+F + V IG T G AI D+ +++ GP + IN AIG
Sbjct: 190 PLVGDDSWKFRLDGVKIGD--TTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIG 242
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 431 VDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLHGSLPYS 470
+DC K+ S+P V+F I G+ F++S + + + +G+L YS
Sbjct: 256 LDCSKIPSLPDVTFVINGRNFNISSQYYIQQ--NGNLCYS 293
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 11/235 (4%)
Query: 85 YMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXN 144
+++ QY G IG Q F +FD+ S N+ V S C + +
Sbjct: 14 FINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISD 71
Query: 145 GESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQE 204
G + TG+ G DS+ + L Q+ + A E + D ++G+
Sbjct: 72 GNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLA-DELSQEVCILSADVVVGIA--A 128
Query: 205 ISVGNAVP---VWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
NA+ V N V++ LI PVFS R Q + GEI+FGG D + G+ TYV
Sbjct: 129 PGCPNALKGKTVLENFVEENLIA-PVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYV 187
Query: 262 PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIG 316
P+ W+F + V IG T G AI D+ +++ GP + IN AIG
Sbjct: 188 PLVGDDSWKFRLDGVKIGD--TTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIG 240
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 431 VDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLHGSLPYS 470
+DC K+ S+P V+F I G+ F++S + + + +G+L YS
Sbjct: 254 LDCSKIPSLPDVTFVINGRNFNISSQYYIQQ--NGNLCYS 291
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 106/275 (38%), Gaps = 36/275 (13%)
Query: 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXX 137
D L ++ +Y + IGTP Q F ++FDTGSS+ WVP C S C
Sbjct: 8 DTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSS 67
Query: 138 XXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAK---- 193
+ +I YGTG G + DS+ VG VK Q G T +
Sbjct: 68 SSTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSEL 127
Query: 194 -FDGILGLGF-----QEISVGNAV-PVWYNMVKQGLIQDPVFSFWLNRNQQEDE------ 240
DGI G + E G+ V N+ KQGLI PVFS ++N N +
Sbjct: 128 FLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGV 187
Query: 241 -----GGEIVFGGVDPNHYKGKHTYVPVTQKGY--WQFNMGDVLIGGKPTGYCAGGCSAI 293
GG+I ++T V ++ GY W + V I G G +
Sbjct: 188 NNTLLGGDI------------QYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFT 235
Query: 294 ADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAV 328
D+GT+ P++ + A SQQ V
Sbjct: 236 IDTGTNFFIAPSSFAEKVVKAALPDATESQQGYTV 270
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 21/220 (9%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVA-------CYFHXXXXXXXXXXXX 142
Y +I +G+ QK TV+ DTGSS+LWVP + C
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFCKNEGTYSPSSSSSSQ 73
Query: 143 XNGESASIQYGTGAIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201
SI+YG G + G + D++ G + + Q+F + T + GILG+G
Sbjct: 74 NLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTS-------TSVDQGILGIG 126
Query: 202 FQEISV-GNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTY 260
++ GN V + QG+I +S +LN Q G+I+FGGVD Y G
Sbjct: 127 YKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQA--TSGQIIFGGVDNAKYSGTLIA 184
Query: 261 VPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSL 300
+PVT + ++ V + G+ + DSGT++
Sbjct: 185 LPVTSDNELRIHLNTVKVAGQSIN---ADVDVLLDSGTTI 221
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 105/241 (43%), Gaps = 25/241 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTN--CYFSVACYFHXXXXXXXXXXXXXNGES 147
Y ++ +G+ Q+ TVI DTGSS+ WV +N C V C G +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAA 73
Query: 148 ASIQYGTGAIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQ--- 203
+I+YG G+ + G + D+V + + + Q+ + T+ + GILG+G+
Sbjct: 74 FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQ-------TSVDQGILGIGYTSNE 126
Query: 204 ---EISVGNAVPVWYN----MVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKG 256
+ S P + N + KQG I+ +S +LN E G I+FGGVD Y G
Sbjct: 127 AVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAET--GTIIFGGVDNAKYSG 184
Query: 257 KHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIG 316
K VT ++ V + G + G A+ DSGT+L P+ + G
Sbjct: 185 KLVAEQVTSSQALTISLASVNLKGSSFSFGDG---ALLDSGTTLTYFPSDFAAQLADKAG 241
Query: 317 A 317
A
Sbjct: 242 A 242
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVP--STNC------YFSVACYFHXXXXXXXXXXX 141
Y +I IG+ QKF VI DTGSS+LWVP S C + C
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTS 73
Query: 142 XXNGESASIQYGTGAIA-GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGL 200
G I YG G+ + G D+V G + Q F + T+ + GILG+
Sbjct: 74 QNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITK-------TSIPQGILGI 126
Query: 201 GFQ-EISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHT 259
G++ + G+ V + QG+I +S +LN G+I+FGGVD Y G
Sbjct: 127 GYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPNAAT--GQIIFGGVDKAKYSGSLI 184
Query: 260 YVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSL 300
VPVT + + + GK G + DSGT++
Sbjct: 185 AVPVTSDRELRITLNSLKAVGKNIN---GNIDVLLDSGTTI 222
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 93/200 (46%), Gaps = 17/200 (8%)
Query: 107 FDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESASIQYGTGAIA-GFFSYDS 165
FDTGS++LWV ST S +G + SI YG G+ A G DS
Sbjct: 32 FDTGSADLWVFSTELPASQQS--GHSVYNPSATGKELSGYTWSISYGDGSSASGNVFTDS 89
Query: 166 VKVGDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEISV--GNAVPVWYNMVKQGL 222
V VG + Q ++A ++ F DG+LGL F I+ + +++ VK L
Sbjct: 90 VTVGGVTAHGQA-VQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSL 148
Query: 223 IQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPV-TQKGYWQFNMGDVLIGGK 281
Q P+F+ L Q G FG +D + Y G TY V +G+W FN+ D G
Sbjct: 149 AQ-PLFAVALKHQQP----GVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNV-DSYTAGS 202
Query: 282 PTGYCAGGCSAIADSGTSLL 301
+G G S IAD+GT+LL
Sbjct: 203 QSG---DGFSGIADTGTTLL 219
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSL 300
GG+IV GG DP HY+G Y+ + + G WQ M V +G T C GC A+ D+G S
Sbjct: 3 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSS-TLLCEDGCLALVDTGASY 61
Query: 301 LAGPTTVITMINHAIGA 317
++G T+ I + A+GA
Sbjct: 62 ISGSTSSIEKLMEALGA 78
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNG 145
+D Y + IGTP Q + FDTGSS+LWV S+ S +G
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSG 72
Query: 146 ESASIQYGTGAIAGFFSY-DSVKVGDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQ 203
+ SI YG G+ + Y D+V VG L V Q +E+ ++ +F + DG+LGL F
Sbjct: 73 ATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFS 131
Query: 204 EISVGNAV--PVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
++ + +++ K L PVF+ L + G FG +D Y G TY
Sbjct: 132 TLNTVSPTQXKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITYT 186
Query: 262 PV-TQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVIT 309
V T++G+W++ +G + + IAD+GT+LL P TV++
Sbjct: 187 AVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 233
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNG 145
+D Y + IGTP Q + FDTGSS+LWV S+ S +G
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSG 72
Query: 146 ESASIQYGTGAIAGFFSY-DSVKVGDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQ 203
+ SI YG G+ + Y D+V VG L V Q +E+ ++ +F + DG+LGL F
Sbjct: 73 ATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFS 131
Query: 204 EISVGNAV--PVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYV 261
++ + +++ K L PVF+ L + G FG +D Y G TY
Sbjct: 132 TLNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITYT 186
Query: 262 PV-TQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVIT 309
V T++G+W++ +G + + IAD+GT+LL P TV++
Sbjct: 187 AVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 233
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 12/228 (5%)
Query: 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNG 145
+D Y + IGTP Q + FDTGSS+LWV S+ S
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGA 72
Query: 146 ESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQE 204
+ + +G D+V VG L V Q +E+ ++ +F + DG+LGL F
Sbjct: 73 TWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFST 131
Query: 205 ISVGNAV--PVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVP 262
++ + +++ K L PVF+ L + G FG +D Y G TY
Sbjct: 132 LNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITYTA 186
Query: 263 V-TQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVIT 309
V T++G+W++ +G + + IAD+GT+LL P TV++
Sbjct: 187 VSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 232
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 12/228 (5%)
Query: 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNG 145
+D Y + IGTP Q + FDTGSS+LWV S+ S
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGA 72
Query: 146 ESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQE 204
+ + +G D+V VG L V Q +E+ ++ +F + DG+LGL F
Sbjct: 73 TWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFST 131
Query: 205 ISVGNAV--PVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVP 262
++ + +++ K L PVF+ L + G FG +D Y G TY
Sbjct: 132 LNTVSPTQQKTFFDNAKASL-DSPVFTADLGYHAP----GTYNFGFIDTTAYTGSITYTA 186
Query: 263 V-TQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVIT 309
V T++G+W++ +G + + IAD+GT+LL P TV++
Sbjct: 187 VSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVS 232
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 95/222 (42%), Gaps = 17/222 (7%)
Query: 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGE 146
D++Y + IGTP Q + FDTGSS+LWV S+ S A +G
Sbjct: 14 DSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGA 73
Query: 147 SASIQYGTGAIAGFFSY-DSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEI 205
S SI YG G+ + Y D V +G V Q ATR G++GL F
Sbjct: 74 SWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDS- 132
Query: 206 SVGNAV-----PVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTY 260
GN V W++ L + P+F+ L Q G FG +D + KG Y
Sbjct: 133 --GNQVRPHPQKTWFSNAASSLAE-PLFTADLRHGQN----GSYNFGYIDTSVAKGPVAY 185
Query: 261 VPV-TQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLL 301
PV +G+W+F +GG + IAD+GT+LL
Sbjct: 186 TPVDNSQGFWEFTASGYSVGGGKLNRNS--IDGIADTGTTLL 225
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y GA AG D V + G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGAS 318
I A+
Sbjct: 268 IKAA 271
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 25/246 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y GA AG D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 146
Query: 206 SVGNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYK 255
+ + P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y
Sbjct: 147 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYT 205
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V
Sbjct: 206 GSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 265
Query: 313 HAIGAS 318
+I A+
Sbjct: 266 KSIKAA 271
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 25/246 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 94
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y GA AG D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 95 VPYTQGAWAGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 152
Query: 206 SVGN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYK 255
+ + P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y
Sbjct: 153 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYT 211
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V
Sbjct: 212 GSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 271
Query: 313 HAIGAS 318
+I A+
Sbjct: 272 KSIKAA 277
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y GA AG D V + G V T + ++GILGL + EI+
Sbjct: 85 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 315 IGAS 318
I A+
Sbjct: 264 IKAA 267
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y GA AG D V + G V T + ++GILGL + EI+
Sbjct: 109 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 169 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 315 IGAS 318
I A+
Sbjct: 288 IKAA 291
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y GA AG D V + G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSG + L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFEAAVKS 267
Query: 315 IGAS 318
I A+
Sbjct: 268 IKAA 271
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGAS 318
I A+
Sbjct: 268 IKAA 271
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGAS 318
I A+
Sbjct: 268 IKAA 271
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGAS 318
I A+
Sbjct: 268 IKAA 271
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 150 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 315 IGAS 318
I A+
Sbjct: 269 IKAA 272
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGAS 318
I A+
Sbjct: 268 IKAA 271
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 25/246 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 91
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y G G D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 92 VPYTQGKWEGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 149
Query: 206 SVGNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYK 255
+ + P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y
Sbjct: 150 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYT 208
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V
Sbjct: 209 GSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 268
Query: 313 HAIGAS 318
+I A+
Sbjct: 269 KSIKAA 274
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 150 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 315 IGAS 318
I A+
Sbjct: 269 IKAA 272
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 25/246 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 86
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y G G D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 87 VPYTQGKWEGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 144
Query: 206 SVGNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYK 255
+ + P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y
Sbjct: 145 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYT 203
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V
Sbjct: 204 GSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 263
Query: 313 HAIGAS 318
+I A+
Sbjct: 264 KSIKAA 269
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 25/246 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y G G D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 142
Query: 206 SVGNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYK 255
+ + P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y
Sbjct: 143 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYT 201
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V
Sbjct: 202 GSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 261
Query: 313 HAIGAS 318
+I A+
Sbjct: 262 KSIKAA 267
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 109 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 208 GNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 169 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 315 IGAS 318
I A+
Sbjct: 288 IKAA 291
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 25/246 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y G G D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 145
Query: 206 SVGN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYK 255
+ + P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y
Sbjct: 146 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYT 204
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V
Sbjct: 205 GSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 264
Query: 313 HAIGAS 318
+I A+
Sbjct: 265 KSIKAA 270
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 25/246 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y G G D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 145
Query: 206 SVGNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYK 255
+ + P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y
Sbjct: 146 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYT 204
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V
Sbjct: 205 GSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 264
Query: 313 HAIGAS 318
+I A+
Sbjct: 265 KSIKAA 270
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 208 GNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 315 IGAS 318
I A+
Sbjct: 264 IKAA 267
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 315 IGAS 318
I A+
Sbjct: 264 IKAA 267
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 25/246 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y G G D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 145
Query: 206 SVGNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYK 255
+ + P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y
Sbjct: 146 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYT 204
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V
Sbjct: 205 GSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 264
Query: 313 HAIGAS 318
+I A+
Sbjct: 265 KSIKAA 270
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 89 VPYCQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 315 IGAS 318
I A+
Sbjct: 268 IKAA 271
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 192 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 315 IGAS 318
I A+
Sbjct: 311 IKAA 314
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 192 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 315 IGAS 318
I A+
Sbjct: 311 IKAA 314
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 25/246 (10%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 85
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y G G D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 86 VPYTQGKWEGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 143
Query: 206 SVGN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYK 255
+ + P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y
Sbjct: 144 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYT 202
Query: 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMIN 312
G Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V
Sbjct: 203 GSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 262
Query: 313 HAIGAS 318
+I A+
Sbjct: 263 KSIKAA 268
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 315 IGAS 318
I A+
Sbjct: 254 IKAA 257
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGAS 318
I A+
Sbjct: 252 IKAA 255
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 130
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 131 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 190
Query: 208 GNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 191 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 249
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 250 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 309
Query: 315 IGAS 318
I A+
Sbjct: 310 IKAA 313
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 129
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 130 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 315 IGAS 318
I A+
Sbjct: 249 IKAA 252
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 138 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 315 IGAS 318
I A+
Sbjct: 257 IKAA 260
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGAS 318
I A+
Sbjct: 252 IKAA 255
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 315 IGAS 318
I A+
Sbjct: 254 IKAA 257
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 131
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 132 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 315 IGAS 318
I A+
Sbjct: 251 IKAA 254
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 75
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 76 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 135
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 136 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 194
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 195 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 254
Query: 315 IGAS 318
I A+
Sbjct: 255 IKAA 258
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 138 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 315 IGAS 318
I A+
Sbjct: 257 IKAA 260
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 208 GNAV--PVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVAS 263
Query: 315 IGAS 318
I A+
Sbjct: 264 IKAA 267
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGAS 318
I A+
Sbjct: 252 IKAA 255
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 315 IGAS 318
I A+
Sbjct: 254 IKAA 257
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGAS 318
I A+
Sbjct: 252 IKAA 255
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 73
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 74 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 133
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 134 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 192
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 193 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 252
Query: 315 IGAS 318
I A+
Sbjct: 253 IKAA 256
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL-----NRNQQE---DEGGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L NQ E GG ++ GG+D + Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 315 IGAS 318
I A+
Sbjct: 252 IKAA 255
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 129
Query: 208 GN--AVPVWYNMVKQGLIQDPVFSFWL---NRNQQEDE-----GGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L Q+ E GG ++ GG+D + Y G
Sbjct: 130 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 315 IGAS 318
I A+
Sbjct: 249 IKAA 252
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 68
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 69 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 128
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL---NRNQQEDE-----GGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L Q+ E GG ++ GG+D + Y G
Sbjct: 129 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 187
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 188 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 247
Query: 315 IGAS 318
I A+
Sbjct: 248 IKAA 251
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 21/244 (8%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 150 IQYGTGAIAGFFSYDSVKV--GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV 207
+ Y G G D V + G V T + ++GILGL + EI+
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 131
Query: 208 --GNAVPVWYNMVKQGLIQDPVFSFWL---NRNQQEDE-----GGEIVFGGVDPNHYKGK 257
+ P + ++VKQ + + +FS L Q+ E GG ++ GG+D + Y G
Sbjct: 132 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHA 314
Y P+ ++ Y++ + V I G+ + +I DSGT+ L P V +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 315 IGAS 318
I A+
Sbjct: 251 IKAA 254
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 95/220 (43%), Gaps = 18/220 (8%)
Query: 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGE 146
D +Y ++ +G + FDTGS++LWV S+ S +G
Sbjct: 14 DEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERS--GHDYYTPGSSAQKIDGA 69
Query: 147 SASIQYGTGAIAGFFSY-DSVKVGDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQE 204
+ SI YG G+ A Y D V VG V D + +E+ + F DG+LGL F
Sbjct: 70 TWSISYGDGSSASGDVYKDKVTVGG-VSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSS 128
Query: 205 ISVGNAVP--VWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVP 262
I+ P +++ VK L +P+F+ L N G FG D + Y G TY
Sbjct: 129 INTVQPTPQKTFFDNVKSSL-SEPIFAVALKHNAP----GVYDFGYTDSSKYTGSITYTD 183
Query: 263 V-TQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLL 301
V +G+W F IG + G IAD+GT+LL
Sbjct: 184 VDNSQGFWGFTADGYSIGSDSSSDSITG---IADTGTTLL 220
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 107 FDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESASIQYGTGAIA-GFFSYDS 165
FDTGS++LWV S S +G S I YG G+ A G D+
Sbjct: 31 FDTGSADLWVFSDELPSSEQT--GHDLYTPSSSATKLSGYSWDISYGDGSSASGDVYRDT 88
Query: 166 VKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV--GNAVPVWYNMVKQGLI 223
V VG + Q A++ DG+LGL F I+ A +++ VK L
Sbjct: 89 VTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQL- 147
Query: 224 QDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPV-TQKGYWQFNMGDVLIGGKP 282
P+F+ L + D G FG +D + Y G TY + +GYW F+ IG
Sbjct: 148 DSPLFAVQL----KHDAPGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGS 203
Query: 283 TGYCAGGCSAIADSGTSLL 301
+ + G SAIAD+GT+L+
Sbjct: 204 S--SSSGFSAIADTGTTLI 220
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 23/238 (9%)
Query: 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESAS 149
YY E+ +G+PPQ ++ DTGSSN V + F H +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 150 IQYGTGAIAGFFSYDSVKV---GDLVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEI 205
+ Y G G D V + ++ V+ I A E F+ + ++GILGL + EI
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEI 132
Query: 206 SVGN--AVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPV 263
+ + P + ++VKQ + + +FS L GG+D + Y G Y P+
Sbjct: 133 ARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGGGSMII------GGIDHSLYTGSLWYTPI 185
Query: 264 TQKGYWQFNMGDVLIGGKPTGYCAGGCS---AIADSGTSLLAGPTTVITMINHAIGAS 318
++ Y++ + V I G+ + +I DSGT+ L P V +I A+
Sbjct: 186 RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAA 243
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 428 ESAVDCGKLSSMPIVSFTIGGKVFDLSPEE 457
E VDC LSSMP VSFTIGGK F L+PE+
Sbjct: 2 ELQVDCNTLSSMPNVSFTIGGKKFGLTPEQ 31
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCT 357
+S++C+ VV+ YG +IL +LL E P+ +CS + LC+
Sbjct: 43 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 79
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCT 357
+S++C+ VV+ YG +IL +LL E P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCT 357
+S++C+ VV+ YG +IL +LL E P+ +CS + LC+
Sbjct: 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 82
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCT 357
+S++C+ VV+ YG +IL +LL E P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
>pdb|2VOG|A Chain A, Structure Of Mouse A1 Bound To The Bmf Bh3-domain
pdb|2VOH|A Chain A, Structure Of Mouse A1 Bound To The Bak Bh3-Domain
pdb|2VOI|A Chain A, Structure Of Mouse A1 Bound To The Bid Bh3-Domain
Length = 157
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 327 AVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVD----ESNDKSSGV 382
++ E Y Q +L + FE+ P + C + F ++ V ++S +D ES D + +
Sbjct: 16 SLAEHYLQYVLQVPAFESAPSQACRVLQRVAFSVQKEVEKNLKSYLDDFHVESIDTARII 75
Query: 383 LNNAMCSACEMAVV 396
N M E ++
Sbjct: 76 FNQVMEKEFEDGII 89
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 321 VSQQCKAVVEQYGQTILDLLLFE-AHPKKICSQMGLC 356
+S CK +V+ Y ILD++ E + P ++CS + LC
Sbjct: 45 MSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLC 81
>pdb|2DOB|A Chain A, Crystal Structure Of Human Saposin A
Length = 83
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 322 SQQCKAVVEQYGQTILDLLLFE-AHPKKICSQMGLC 356
S CK +V+ Y ILD++ E + P ++CS + LC
Sbjct: 46 SASCKEIVDSYLPVILDIIKGEXSRPGEVCSALNLC 81
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 272 NMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQ 331
N + +GG TG AG +A G + PTT++ + G G+ S+Q K ++
Sbjct: 91 NTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAHDSSVGGKVGINSKQGKNLIGA 150
Query: 332 YGQ---TILDLLLFEAHP-KKICS 351
+ + I DL + P K+I S
Sbjct: 151 FYRPTAVIYDLDFLKTLPFKQILS 174
>pdb|3AQ9|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q50e Mutant, Fe(Iii) Form
pdb|3AQ9|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q50e Mutant, Fe(Iii) Form
Length = 121
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 204 EISVGNAVPVWYNMVKQGLIQDPVFSFWLN-----RNQQEDEGGEIVFGGVDPNHYKGKH 258
E ++ AVP++Y K+ L + V F+ N + +QE + ++ GG PNHYKGK+
Sbjct: 14 ENAMKAAVPLFY---KKVLADERVKHFFKNTDMDHQTKQETDFLTMLLGG--PNHYKGKN 68
>pdb|1N69|A Chain A, Crystal Structure Of Human Saposin B
pdb|1N69|B Chain B, Crystal Structure Of Human Saposin B
pdb|1N69|C Chain C, Crystal Structure Of Human Saposin B
Length = 81
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 286 CAGGCSAIADSGTSLLAGPTTVITMINHA------IGASGVVSQQCKAVVEQYGQTILDL 339
C + D T++ T V ++ H +G ++ CK + QY + + +
Sbjct: 6 CQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPG--MADICKNYISQYSEIAIQM 63
Query: 340 LLFEAHPKKICSQMGLC 356
++ PK+IC+ +G C
Sbjct: 64 MM-HMQPKEICALVGFC 79
>pdb|3FHH|A Chain A, Crystal Structure Of The HemeHEMOGLOBIN OUTER MEMBRANE
Transporter Shua From Shigella Dysenteriae
Length = 640
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 148 ASIQYGTGAIAGFFSYDSVKVGDLVVKDQ 176
+++ YG+GA+ G SYD+V DL+ + Q
Sbjct: 107 SALLYGSGALGGVISYDTVDAKDLLQEGQ 135
>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes.
pdb|4EQB|B Chain B, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes
Length = 330
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 177 EFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVK 219
EF+ + +PG F + F G LG+ + E V A W ++ K
Sbjct: 94 EFLNQSFDPGNKFSIPYFWGTLGIVYNETMVDEAPEHWDDLWK 136
>pdb|3QBD|A Chain A, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBD|B Chain B, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBE|A Chain A, Crystal Structure Of The 3-Dehydroquinate Synthase (Arob)
From Mycobacterium Tuberculosis
Length = 368
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGA-SGVVSQQCKAVVEQYGQ 334
V +GG AG +A G S++ PTT++ M++ A+G +G+ + K +V + Q
Sbjct: 108 VSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQ 167
Query: 335 ---TILDLLLFEAHPKK--IC 350
++DL + P+ IC
Sbjct: 168 PLAVLVDLATLQTLPRDEMIC 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,546,830
Number of Sequences: 62578
Number of extensions: 561718
Number of successful extensions: 1459
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 163
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)