Query 012110
Match_columns 471
No_of_seqs 246 out of 2237
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 23:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 1.5E-54 3.4E-59 453.3 34.9 283 29-318 63-356 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 5.6E-52 1.2E-56 418.0 32.4 282 84-470 1-285 (325)
3 cd05478 pepsin_A Pepsin A, asp 100.0 1.8E-51 3.9E-56 412.8 31.5 280 81-470 2-281 (317)
4 cd06098 phytepsin Phytepsin, a 100.0 2E-51 4.4E-56 412.5 29.8 232 80-311 1-232 (317)
5 cd05487 renin_like Renin stimu 100.0 6.8E-51 1.5E-55 410.2 32.4 282 82-470 1-285 (326)
6 cd05486 Cathespin_E Cathepsin 100.0 3.8E-51 8.2E-56 410.4 29.9 273 90-469 1-275 (316)
7 cd05485 Cathepsin_D_like Cathe 100.0 1.4E-50 3E-55 408.4 32.4 285 80-470 2-289 (329)
8 cd05488 Proteinase_A_fungi Fun 100.0 1.3E-50 2.8E-55 407.1 31.6 280 80-470 1-280 (320)
9 cd05477 gastricsin Gastricsins 100.0 3.1E-50 6.7E-55 404.1 32.2 275 87-469 1-275 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 1.8E-48 3.9E-53 404.7 34.3 281 76-469 126-410 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.4E-47 2.9E-52 397.4 34.4 282 76-470 125-410 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 9.8E-46 2.1E-50 370.1 21.6 274 89-470 1-277 (317)
13 cd06097 Aspergillopepsin_like 100.0 1.6E-42 3.5E-47 341.6 27.9 219 90-316 1-225 (278)
14 KOG1339 Aspartyl protease [Pos 100.0 9.6E-43 2.1E-47 359.7 26.9 281 78-469 35-353 (398)
15 cd05473 beta_secretase_like Be 100.0 4.3E-42 9.4E-47 351.3 27.2 223 88-318 2-240 (364)
16 PLN03146 aspartyl protease fam 100.0 3E-40 6.4E-45 343.5 30.2 215 86-316 81-334 (431)
17 cd05474 SAP_like SAPs, pepsin- 100.0 1.5E-39 3.2E-44 323.0 27.2 239 89-469 2-258 (295)
18 cd06096 Plasmepsin_5 Plasmepsi 100.0 9.9E-40 2.1E-44 329.0 24.5 216 88-314 2-256 (326)
19 cd05471 pepsin_like Pepsin-lik 100.0 2.2E-38 4.8E-43 311.6 30.8 227 90-318 1-231 (283)
20 cd05472 cnd41_like Chloroplast 100.0 1.6E-39 3.4E-44 323.6 22.8 191 89-318 1-200 (299)
21 cd05475 nucellin_like Nucellin 100.0 1E-35 2.2E-40 292.6 24.4 184 88-306 1-194 (273)
22 cd05476 pepsin_A_like_plant Ch 100.0 5E-36 1.1E-40 293.4 21.3 178 89-306 1-193 (265)
23 cd05489 xylanase_inhibitor_I_l 100.0 2.2E-32 4.8E-37 278.5 22.7 212 96-318 2-258 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 6.9E-22 1.5E-26 166.9 13.3 108 92-200 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 3E-20 6.4E-25 168.7 17.2 136 90-248 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.0 7E-10 1.5E-14 100.4 5.9 51 268-318 1-58 (161)
27 PF05184 SapB_1: Saposin-like 98.1 1.8E-06 4E-11 58.5 3.0 38 386-423 2-39 (39)
28 cd05483 retropepsin_like_bacte 98.1 9.8E-06 2.1E-10 65.9 7.1 91 89-201 2-93 (96)
29 TIGR02281 clan_AA_DTGA clan AA 97.4 0.0013 2.9E-08 56.4 9.3 100 80-201 2-102 (121)
30 PF13650 Asp_protease_2: Aspar 96.8 0.0079 1.7E-07 47.9 8.4 88 92-201 1-89 (90)
31 cd05479 RP_DDI RP_DDI; retrope 95.5 0.1 2.3E-06 44.8 9.1 90 87-201 14-106 (124)
32 PF11925 DUF3443: Protein of u 95.3 0.19 4E-06 50.7 11.1 196 90-306 24-272 (370)
33 COG3577 Predicted aspartyl pro 95.1 0.13 2.9E-06 47.5 8.8 92 76-182 92-184 (215)
34 cd05484 retropepsin_like_LTR_2 94.4 0.19 4.1E-06 40.5 7.2 75 90-182 1-78 (91)
35 smart00741 SapB Saposin (B) Do 93.9 0.069 1.5E-06 40.8 3.5 37 387-423 2-38 (76)
36 PF03489 SapB_2: Saposin-like 93.1 0.02 4.2E-07 37.6 -0.7 33 324-356 3-35 (35)
37 cd06095 RP_RTVL_H_like Retrope 91.5 1.2 2.6E-05 35.5 7.8 81 93-202 2-84 (86)
38 PF13975 gag-asp_proteas: gag- 86.3 1.3 2.8E-05 34.0 4.4 32 87-120 6-37 (72)
39 PF07172 GRP: Glycine rich pro 83.3 0.86 1.9E-05 37.2 2.2 26 1-26 1-26 (95)
40 PF07966 A1_Propeptide: A1 Pro 80.3 1.1 2.5E-05 28.0 1.5 24 30-53 1-24 (29)
41 KOG1340 Prosaposin [Lipid tran 78.1 4.1 8.9E-05 38.5 5.1 88 324-423 78-166 (218)
42 PF00077 RVP: Retroviral aspar 77.0 3.8 8.2E-05 33.2 4.2 29 91-121 7-35 (100)
43 KOG1340 Prosaposin [Lipid tran 74.5 3.1 6.8E-05 39.3 3.3 47 384-435 35-81 (218)
44 PF13650 Asp_protease_2: Aspar 67.4 6.4 0.00014 30.7 3.3 29 276-311 3-31 (90)
45 PF09668 Asp_protease: Asparty 64.8 12 0.00026 32.2 4.6 89 88-200 23-113 (124)
46 TIGR02281 clan_AA_DTGA clan AA 62.9 8.4 0.00018 32.8 3.4 37 265-311 8-44 (121)
47 PF13975 gag-asp_proteas: gag- 61.1 12 0.00027 28.5 3.7 29 276-311 13-41 (72)
48 cd05482 HIV_retropepsin_like R 60.0 13 0.00027 29.9 3.7 27 93-121 2-28 (87)
49 cd05484 retropepsin_like_LTR_2 59.4 12 0.00025 29.9 3.4 31 275-312 4-34 (91)
50 PF12384 Peptidase_A2B: Ty3 tr 53.6 17 0.00037 32.7 3.7 28 92-119 35-62 (177)
51 PF08284 RVP_2: Retroviral asp 53.1 79 0.0017 27.4 7.9 29 88-118 20-48 (135)
52 cd05483 retropepsin_like_bacte 52.8 21 0.00046 28.0 4.0 29 276-311 7-35 (96)
53 cd06095 RP_RTVL_H_like Retrope 50.5 17 0.00037 28.7 3.0 29 276-311 3-31 (86)
54 cd05479 RP_DDI RP_DDI; retrope 45.1 23 0.0005 30.1 3.2 28 276-310 21-48 (124)
55 smart00741 SapB Saposin (B) Do 41.3 8 0.00017 29.0 -0.3 37 320-356 40-76 (76)
56 TIGR03698 clan_AA_DTGF clan AA 38.5 22 0.00047 29.6 2.0 22 289-310 16-38 (107)
57 cd06094 RP_Saci_like RP_Saci_l 36.3 2.2E+02 0.0047 23.0 7.2 21 102-122 9-29 (89)
58 COG3577 Predicted aspartyl pro 35.6 65 0.0014 30.2 4.7 30 276-312 110-139 (215)
59 COG5550 Predicted aspartyl pro 33.7 25 0.00055 30.0 1.6 22 292-313 29-51 (125)
60 PRK02710 plastocyanin; Provisi 30.3 62 0.0014 27.3 3.5 35 1-35 1-35 (119)
61 TIGR03698 clan_AA_DTGF clan AA 29.8 65 0.0014 26.7 3.5 66 92-173 2-73 (107)
62 PF09668 Asp_protease: Asparty 25.2 77 0.0017 27.2 3.1 30 275-311 28-57 (124)
63 cd03033 ArsC_15kD Arsenate Red 25.1 79 0.0017 26.5 3.2 36 383-418 5-49 (113)
64 PF07803 GSG-1: GSG1-like prot 22.1 1.1E+02 0.0023 25.9 3.3 34 1-34 2-39 (118)
65 cd05471 pepsin_like Pepsin-lik 21.3 1.1E+02 0.0024 29.2 3.9 43 78-120 170-220 (283)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.5e-54 Score=453.29 Aligned_cols=283 Identities=36% Similarity=0.633 Sum_probs=233.8
Q ss_pred ceEEEeeeecCCCchhhhhhcchhhhhHHHHHhhhhcCCCCCC-CCCCCcceeeeeecCCcEEEEEEEEcCCCcEEEEEE
Q 012110 29 GLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNL-RDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIF 107 (471)
Q Consensus 29 ~~~~ipl~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~n~~~~~Y~~~I~IGtP~Q~~~v~l 107 (471)
.++|+||+|..+.++.+.+.+ .+ ..+......+...... ........+||.|+.|.+|+++|+||||||+|.|+|
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~ 138 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNS-EK---GYISRVLTKHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVF 138 (482)
T ss_pred heEEeeeEEcchHHHhhhhHH-HH---HhhhhhhhccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEE
Confidence 589999999877766544331 01 0000111111100000 000134678999999999999999999999999999
Q ss_pred ecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCccee--CCe---eEEEEeccCeEEeEEEEEEEEEeeEeeccceEEEEE
Q 012110 108 DTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKK--NGE---SASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEAT 182 (471)
Q Consensus 108 DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~--~~~---~~~~~Y~~gs~~G~~~~D~v~ig~~~i~~~~fg~a~ 182 (471)
||||+++||++..|. ..+|..++.||+++|+||+. .+. .+.+.|++|++.|.++.|+|++|+..+++|.||++.
T Consensus 139 DTGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~ 217 (482)
T PTZ00165 139 DTGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAI 217 (482)
T ss_pred eCCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEE
Confidence 999999999999996 56799999999999999998 555 688999999999999999999999999999999999
Q ss_pred ecCCccccccccceEEcCCCCcc---cCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECccCCCCC--ccc
Q 012110 183 REPGVTFMVAKFDGILGLGFQEI---SVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHY--KGK 257 (471)
Q Consensus 183 ~~~~~~~~~~~~dGIlGLg~~~~---s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G~L~fGgiD~s~~--~G~ 257 (471)
..++..|....+|||||||++.. +.....|++++|++||+|++++||+||.+..+ .+|+|+|||+|++++ .|+
T Consensus 218 ~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~ 295 (482)
T PTZ00165 218 EESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHK 295 (482)
T ss_pred eccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCc
Confidence 87665676778999999999977 33457889999999999999999999986532 379999999999877 578
Q ss_pred eeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCc
Q 012110 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (471)
Q Consensus 258 l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~ 318 (471)
++|+|+.+.+||.|.+++|+|+++.+..+..++.|++||||+++++|++++++|.+++++.
T Consensus 296 i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~ 356 (482)
T PTZ00165 296 IWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE 356 (482)
T ss_pred eEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc
Confidence 9999999999999999999999988766667889999999999999999999999999765
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5.6e-52 Score=417.96 Aligned_cols=282 Identities=51% Similarity=0.968 Sum_probs=249.8
Q ss_pred ecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCC-CcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEeEEE
Q 012110 84 NYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYF-SVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFS 162 (471)
Q Consensus 84 n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G~~~ 162 (471)
|+.|.+|+++|.||||+|++.|+|||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4568999999999999999999999999999999999963 236888899999999999999999999999999999999
Q ss_pred EEEEEEeeEeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCc
Q 012110 163 YDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGG 242 (471)
Q Consensus 163 ~D~v~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G 242 (471)
+|+|++|+..++++.||++....+..+....++||||||++..+....+|++++|+++|.|++++||+||.+..+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999887777788999999999999999999998754333579
Q ss_pred eEEECccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCcceee
Q 012110 243 EIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVS 322 (471)
Q Consensus 243 ~L~fGgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~~~~~ 322 (471)
+|+|||+|+++|.|++.|+|+..+.+|.|.+++|+|++... .+.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999998899999999999998643 2345678999999999999999999999999754
Q ss_pred cccchhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHHHHHHHHHh
Q 012110 323 QQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQL 402 (471)
Q Consensus 323 ~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (471)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccHHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEccC--CCcccC
Q 012110 403 QQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLH--GSLPYS 470 (471)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 470 (471)
+...+.|.++|++...+|.|+|+|+|+.|+|+|++|+++..+ ...|+.
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~ 285 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLS 285 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEee
Confidence 123467899999988999999999999999999999998654 246873
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-51 Score=412.84 Aligned_cols=280 Identities=49% Similarity=0.864 Sum_probs=251.4
Q ss_pred eeeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEeE
Q 012110 81 ALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGF 160 (471)
Q Consensus 81 ~l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G~ 160 (471)
||.|+.+..|+++|+||||+|++.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999996 4579888999999999999999999999999999999
Q ss_pred EEEEEEEEeeEeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCC
Q 012110 161 FSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (471)
Q Consensus 161 ~~~D~v~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~ 240 (471)
+++|+|++|+..++++.||++....+..+.....+||||||++..+.....|++++|+++|+|++++||+||.+..+ .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987655322334579999999988877677889999999999999999999998632 3
Q ss_pred CceEEECccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCcce
Q 012110 241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGV 320 (471)
Q Consensus 241 ~G~L~fGgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~~~ 320 (471)
+|+|+|||+|+++|.|+++|+|+....+|.|.++++.|+++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999988999999999999999875 3356789999999999999999999999997651
Q ss_pred eecccchhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHHHHHHHH
Q 012110 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQN 400 (471)
Q Consensus 321 ~~~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (471)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcccHHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEccCCCcccC
Q 012110 401 QLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLHGSLPYS 470 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
...+.|.++|++...+|.|+|+|+|+.|+|+|++|+.+. ...||.
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C~~ 281 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD--QGSCTS 281 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC--CCEEeE
Confidence 134678999999889999999999999999999999875 567874
No 4
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2e-51 Score=412.45 Aligned_cols=232 Identities=84% Similarity=1.451 Sum_probs=210.9
Q ss_pred eeeeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEe
Q 012110 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAG 159 (471)
Q Consensus 80 ~~l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G 159 (471)
++|.|+.|.+|+++|+||||+|++.|+|||||+++||++..|.....|..++.|+|++|+|++..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999964568999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeEeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCC
Q 012110 160 FFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQED 239 (471)
Q Consensus 160 ~~~~D~v~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~ 239 (471)
.+++|+|++|+..++++.||++....+..+....++||||||++..+.....|++++|+++|+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776655666678999999999887777788999999999999999999998754334
Q ss_pred CCceEEECccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHH
Q 012110 240 EGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (471)
Q Consensus 240 ~~G~L~fGgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i 311 (471)
..|+|+|||+|+++|.|+++|+|+...++|.|.++++.|+++.+..+.....+++||||+++++|++++++|
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i 232 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQI 232 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhh
Confidence 589999999999999999999999988999999999999998876666678899999999999999876554
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.8e-51 Score=410.23 Aligned_cols=282 Identities=44% Similarity=0.873 Sum_probs=250.6
Q ss_pred eeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCC-cccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEeE
Q 012110 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFS-VACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGF 160 (471)
Q Consensus 82 l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~-~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G~ 160 (471)
|.|+.|.+|+++|+||||+|+++|+|||||+++||++..|... ..|..++.|+|++|+|++..++.+.+.|++|+++|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 4678899999999999999999999999999999999999632 468888999999999999999999999999999999
Q ss_pred EEEEEEEEeeEeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCC
Q 012110 161 FSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (471)
Q Consensus 161 ~~~D~v~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~ 240 (471)
+++|+|++|+..+. +.||++.......+....++||||||++..+.....|++++|++||.|++++||+||.+..+...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998884 88999987654445556789999999988776677889999999999999999999987643345
Q ss_pred CceEEECccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCcce
Q 012110 241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGV 320 (471)
Q Consensus 241 ~G~L~fGgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~~~ 320 (471)
.|+|+|||+|+++|.|+++|+|+...++|.|.++++.|+++.+. +..+..++|||||+++++|++++++|++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 89999999999999999999999989999999999999998764 3456789999999999999999999999998761
Q ss_pred eecccchhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHHHHHHHH
Q 012110 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQN 400 (471)
Q Consensus 321 ~~~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (471)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcccHHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEccC--CCcccC
Q 012110 401 QLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLH--GSLPYS 470 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 470 (471)
..+.|.++|+....+|.|+|+|+|++|+|+|++|+++..+ +..||.
T Consensus 238 ------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~ 285 (326)
T cd05487 238 ------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTV 285 (326)
T ss_pred ------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEE
Confidence 1456899999988999999999999999999999998755 567873
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3.8e-51 Score=410.36 Aligned_cols=273 Identities=48% Similarity=0.879 Sum_probs=244.9
Q ss_pred EEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEeEEEEEEEEEe
Q 012110 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVG 169 (471)
Q Consensus 90 Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G~~~~D~v~ig 169 (471)
|+++|+||||+|+++|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 4579989999999999999999999999999999999999999999
Q ss_pred eEeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECcc
Q 012110 170 DLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGV 249 (471)
Q Consensus 170 ~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G~L~fGgi 249 (471)
+..++++.||++....+..+....++||||||++..+.....|++++|++||+|++++||+||.+..+....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877665445556789999999998877677889999999999999999999997644445899999999
Q ss_pred CCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCcceeecccchhh
Q 012110 250 DPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVV 329 (471)
Q Consensus 250 D~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~~~~~~~C~~~~ 329 (471)
|+++|.|++.|+|+...++|.|.+++|+|+++.+. ...+..++|||||+++++|++++++|.+.+++..
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~---------- 228 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGATA---------- 228 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCcc----------
Confidence 99999999999999999999999999999998764 3456789999999999999999999999987651
Q ss_pred cccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHHHHHHHHHhhhcccHH
Q 012110 330 EQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQE 409 (471)
Q Consensus 330 ~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (471)
T Consensus 229 -------------------------------------------------------------------------------- 228 (316)
T cd05486 229 -------------------------------------------------------------------------------- 228 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEcc--CCCccc
Q 012110 410 NILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRL--HGSLPY 469 (471)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 469 (471)
..+.|.++|+....+|+|+|+|+|+.|+|+|++|+++.. .+..|+
T Consensus 229 ---------------~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~ 275 (316)
T cd05486 229 ---------------TDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCS 275 (316)
T ss_pred ---------------cCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEe
Confidence 236689999988899999999999999999999999852 245687
No 7
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.4e-50 Score=408.39 Aligned_cols=285 Identities=55% Similarity=0.991 Sum_probs=253.7
Q ss_pred eeeeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCC-cccCCCCCCCCCCCCcceeCCeeEEEEeccCeEE
Q 012110 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFS-VACYFHSKYKSSQSSTYKKNGESASIQYGTGAIA 158 (471)
Q Consensus 80 ~~l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~-~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~ 158 (471)
.+|.|+.|..|+++|+||||+|++.|++||||+++||++..|... ..|..++.|+|++|+|++..++.|.+.|++|+++
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 478999999999999999999999999999999999999999532 3688888999999999999999999999999999
Q ss_pred eEEEEEEEEEeeEeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCC
Q 012110 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQE 238 (471)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~ 238 (471)
|.+++|+|++|+..++++.||++....+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+..+.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876554455567899999999988766777899999999999999999999876543
Q ss_pred CCCceEEECccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCc
Q 012110 239 DEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (471)
Q Consensus 239 ~~~G~L~fGgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~ 318 (471)
...|+|+|||+|+++|.|+++|+|+...++|.|.++++.+++..+. ..+..++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 4579999999999999999999999989999999999999998753 45678999999999999999999999999765
Q ss_pred ceeecccchhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHHHHHH
Q 012110 319 GVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWM 398 (471)
Q Consensus 319 ~~~~~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (471)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHhhhcccHHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEccC--CCcccC
Q 012110 399 QNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLH--GSLPYS 470 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 470 (471)
...+.|.++|+....+|.|+|+|||+.|.|+|++|+++..+ ...||.
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~ 289 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLS 289 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEee
Confidence 12356899999888899999999999999999999998754 356874
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.3e-50 Score=407.13 Aligned_cols=280 Identities=48% Similarity=0.879 Sum_probs=250.8
Q ss_pred eeeeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEe
Q 012110 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAG 159 (471)
Q Consensus 80 ~~l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G 159 (471)
+||.|+.|..|+++|+||||+|++.|+|||||+++||++..|. ...|..++.|++++|+|++..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 4789999999999999999999999999999999999999996 457988899999999999999999999999999999
Q ss_pred EEEEEEEEEeeEeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCC
Q 012110 160 FFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQED 239 (471)
Q Consensus 160 ~~~~D~v~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~ 239 (471)
.+++|++++++..++++.|+++....+..+.....+||||||++..+.....+.+.+|+++|+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998766554555678999999999887666677888999999999999999999863 2
Q ss_pred CCceEEECccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCcc
Q 012110 240 EGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASG 319 (471)
Q Consensus 240 ~~G~L~fGgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~~ 319 (471)
..|+|+|||+|++++.|+++|+|+...++|.|.+++++||++.+. ..+..++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~--~~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELE--LENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEec--cCCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 489999999999999999999999988999999999999998764 345689999999999999999999999997651
Q ss_pred eeecccchhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHHHHHHH
Q 012110 320 VVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQ 399 (471)
Q Consensus 320 ~~~~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (471)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcccHHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEccCCCcccC
Q 012110 400 NQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLHGSLPYS 470 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
...+.|.++|++...+|.|+|+|+|++|.|+|++|++.. +..|+.
T Consensus 236 ------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~--~g~C~~ 280 (320)
T cd05488 236 ------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV--SGSCIS 280 (320)
T ss_pred ------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC--CCeEEE
Confidence 235678999999889999999999999999999999854 345763
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.1e-50 Score=404.07 Aligned_cols=275 Identities=48% Similarity=0.897 Sum_probs=247.4
Q ss_pred CcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEeEEEEEEE
Q 012110 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSV 166 (471)
Q Consensus 87 ~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G~~~~D~v 166 (471)
|..|+++|+||||||++.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.++.|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999996 4579988999999999999999999999999999999999999
Q ss_pred EEeeEeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEE
Q 012110 167 KVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVF 246 (471)
Q Consensus 167 ~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G~L~f 246 (471)
++|+..++++.||++....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998765544445567999999999887777788999999999999999999998753 224799999
Q ss_pred CccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCcceeecccc
Q 012110 247 GGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCK 326 (471)
Q Consensus 247 GgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~~~~~~~C~ 326 (471)
||+|++++.|++.|+|+...++|.|.++++.|++..+..+..+..++|||||+++++|++++++|++.+++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~-------- 230 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ-------- 230 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc--------
Confidence 999999999999999999889999999999999988765556678999999999999999999999999876
Q ss_pred hhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHHHHHHHHHhhhcc
Q 012110 327 AVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQ 406 (471)
Q Consensus 327 ~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (471)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T cd05477 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEccCCCccc
Q 012110 407 TQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLHGSLPY 469 (471)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
....+.|.++|+....+|.|+|+|+|++|.|+|++|+.+. ...||
T Consensus 231 ----------------~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~ 275 (318)
T cd05477 231 ----------------QDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN--NGYCT 275 (318)
T ss_pred ----------------cccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC--CCeEE
Confidence 1235678999999899999999999999999999999875 45676
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.8e-48 Score=404.72 Aligned_cols=281 Identities=34% Similarity=0.630 Sum_probs=244.3
Q ss_pred CcceeeeeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccC
Q 012110 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (471)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g 155 (471)
....+||.|+.+.+|+++|+||||||++.|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~G 204 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSG 204 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCCC
Confidence 66789999999999999999999999999999999999999999996 55799999999999999999999999999999
Q ss_pred eEEeEEEEEEEEEeeEeeccceEEEEEecCCc--cccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEec
Q 012110 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLN 233 (471)
Q Consensus 156 s~~G~~~~D~v~ig~~~i~~~~fg~a~~~~~~--~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~ 233 (471)
+++|.++.|+|++|+.+++ ..|+++....+. .+....+|||||||++..+.....|++.+|++||.|++++||+||.
T Consensus 205 svsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~ 283 (453)
T PTZ00147 205 TVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLP 283 (453)
T ss_pred CEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEec
Confidence 9999999999999999998 568877655432 1234468999999999887777889999999999999999999998
Q ss_pred CCCCCCCCceEEECccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHH
Q 012110 234 RNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (471)
Q Consensus 234 ~~~~~~~~G~L~fGgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~ 313 (471)
+.+ ...|.|+|||+|+++|.|++.|+|+.++.+|.|.++ +.+++.. .....+++||||+++++|+++++++++
T Consensus 284 ~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~~ 356 (453)
T PTZ00147 284 PED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFVE 356 (453)
T ss_pred CCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHHH
Confidence 753 238999999999999999999999998899999998 4777643 246789999999999999999999999
Q ss_pred HhCCcceeecccchhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHH
Q 012110 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (471)
Q Consensus 314 ~i~a~~~~~~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (471)
++++...
T Consensus 357 ~l~~~~~------------------------------------------------------------------------- 363 (453)
T PTZ00147 357 SLDVFKV------------------------------------------------------------------------- 363 (453)
T ss_pred HhCCeec-------------------------------------------------------------------------
Confidence 9976510
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEccC--CCccc
Q 012110 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLH--GSLPY 469 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 469 (471)
...+.|.++|+. ..+|.|+|+++|+.|+|+|++|+....+ ...|+
T Consensus 364 ------------------------------~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~ 410 (453)
T PTZ00147 364 ------------------------------PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCM 410 (453)
T ss_pred ------------------------------CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEE
Confidence 123558889986 6799999999999999999999986443 24586
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.4e-47 Score=397.44 Aligned_cols=282 Identities=32% Similarity=0.648 Sum_probs=243.3
Q ss_pred CcceeeeeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccC
Q 012110 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (471)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g 155 (471)
....++|.|+.+.+|+++|+||||+|++.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~G 203 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGSG 203 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECCc
Confidence 66778999999999999999999999999999999999999999996 45799999999999999999999999999999
Q ss_pred eEEeEEEEEEEEEeeEeeccceEEEEEecCC--ccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEec
Q 012110 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREPG--VTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLN 233 (471)
Q Consensus 156 s~~G~~~~D~v~ig~~~i~~~~fg~a~~~~~--~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~ 233 (471)
++.|.+++|+|++|+.+++ +.|+++..... ..+....++||||||++..+.....|++++|++||.|++++||+||.
T Consensus 204 sv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~ 282 (450)
T PTZ00013 204 TVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP 282 (450)
T ss_pred eEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEec
Confidence 9999999999999999987 57777765432 12334568999999999887777889999999999999999999998
Q ss_pred CCCCCCCCceEEECccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHH
Q 012110 234 RNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (471)
Q Consensus 234 ~~~~~~~~G~L~fGgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~ 313 (471)
+.+ ...|+|+|||+|+++|.|+++|+|+....+|.|.++ +.+|.... ....+++||||+++++|+++++++++
T Consensus 283 ~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~ 355 (450)
T PTZ00013 283 VHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFA 355 (450)
T ss_pred CCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHH
Confidence 653 238999999999999999999999998899999998 66665432 45679999999999999999999999
Q ss_pred HhCCcceeecccchhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHH
Q 012110 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (471)
Q Consensus 314 ~i~a~~~~~~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (471)
++++...
T Consensus 356 ~l~~~~~------------------------------------------------------------------------- 362 (450)
T PTZ00013 356 NLNVIKV------------------------------------------------------------------------- 362 (450)
T ss_pred HhCCeec-------------------------------------------------------------------------
Confidence 9976510
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEcc--CCCcccC
Q 012110 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRL--HGSLPYS 470 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 470 (471)
+..+.|.++|+. ..+|+|+|.++|++++|+|++|+.... ++..|+.
T Consensus 363 ------------------------------~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~ 410 (450)
T PTZ00013 363 ------------------------------PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMI 410 (450)
T ss_pred ------------------------------CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEE
Confidence 124568899975 579999999999999999999997532 3557873
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=9.8e-46 Score=370.13 Aligned_cols=274 Identities=38% Similarity=0.709 Sum_probs=243.9
Q ss_pred EEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEeEEEEEEEEE
Q 012110 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKV 168 (471)
Q Consensus 89 ~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G~~~~D~v~i 168 (471)
+|+++|+||||+|+++|++||||+++||++..|..+..|..+..|+++.|+|++..++.+.+.|++|+++|.++.|+|++
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999974336788899999999999999999999999999999999999999
Q ss_pred eeEeeccceEEEEEecCCccccccccceEEcCCCCcccCCC-CCchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEEC
Q 012110 169 GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGN-AVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFG 247 (471)
Q Consensus 169 g~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~-~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G~L~fG 247 (471)
++..+.++.||++....+..+....++||||||++..+... .++++++|+++|+|++++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876655567788999999988776554 788999999999999999999999875 347999999
Q ss_pred ccCCCCCccceeEEecccccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCcceeecccch
Q 012110 248 GVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKA 327 (471)
Q Consensus 248 giD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~~~~~~~C~~ 327 (471)
|+|+++|.|+++|+|+...++|.+.+++|.+++... .......++||||++++++|++++++|++++++...
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~------- 230 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS------- 230 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE-------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhccccc-------
Confidence 999999999999999999999999999999999932 234567899999999999999999999999987721
Q ss_pred hhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHHHHHHHHHhhhccc
Q 012110 328 VVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQT 407 (471)
Q Consensus 328 ~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (471)
T Consensus 231 -------------------------------------------------------------------------------- 230 (317)
T PF00026_consen 231 -------------------------------------------------------------------------------- 230 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEccCCC--cccC
Q 012110 408 QENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLHGS--LPYS 470 (471)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 470 (471)
.+.|.++|+....+|.|+|+|++.+|+|+|++|+.+..... .||.
T Consensus 231 ------------------~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~ 277 (317)
T PF00026_consen 231 ------------------DGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYL 277 (317)
T ss_dssp ------------------CSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEE
T ss_pred ------------------ceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEe
Confidence 16799999999899999999999999999999999987754 6875
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.6e-42 Score=341.63 Aligned_cols=219 Identities=34% Similarity=0.531 Sum_probs=192.7
Q ss_pred EEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCccee-CCeeEEEEeccCe-EEeEEEEEEEE
Q 012110 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKK-NGESASIQYGTGA-IAGFFSYDSVK 167 (471)
Q Consensus 90 Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~-~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (471)
|+++|+||||+|++.|+|||||+++||++..|. ...|..++.|++++|+|++. .++.+.+.|++|+ +.|.+++|+|.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 23455677899999999987 4789999999997 89999999999
Q ss_pred EeeEeeccceEEEEEecCCccccccccceEEcCCCCcccCC---CCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCceE
Q 012110 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVG---NAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEI 244 (471)
Q Consensus 168 ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~---~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G~L 244 (471)
+|+..++++.||++.......+....++||||||++..+.. ..++++++|++++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654445567899999999876542 35679999999865 89999999863 28999
Q ss_pred EECccCCCCCccceeEEeccc-ccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhC
Q 012110 245 VFGGVDPNHYKGKHTYVPVTQ-KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIG 316 (471)
Q Consensus 245 ~fGgiD~s~~~G~l~~~pv~~-~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~ 316 (471)
+|||+|+++|.|+++|+|+.. .++|.|+++++.|++.... ...+..++|||||+++++|++++++|+++++
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCc
Confidence 999999999999999999976 7899999999999987432 3467899999999999999999999999994
No 14
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-43 Score=359.73 Aligned_cols=281 Identities=43% Similarity=0.728 Sum_probs=233.2
Q ss_pred ceeeeeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCC-CCC-CCCCCCCcceeCCee--------
Q 012110 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYF-HSK-YKSSQSSTYKKNGES-------- 147 (471)
Q Consensus 78 ~~~~l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~-~~~-y~~~~Sst~~~~~~~-------- 147 (471)
...++..+.++.|+++|+||||||+|.|+|||||+++||+|..|.. .|.. +.. |+|++|+||+...|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456666778899999999999999999999999999999999962 6865 455 999999999987633
Q ss_pred ----------EEEEeccCe-EEeEEEEEEEEEee---EeeccceEEEEEecCCccccc-cccceEEcCCCCcccCCCCCc
Q 012110 148 ----------ASIQYGTGA-IAGFFSYDSVKVGD---LVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEISVGNAVP 212 (471)
Q Consensus 148 ----------~~~~Y~~gs-~~G~~~~D~v~ig~---~~i~~~~fg~a~~~~~~~~~~-~~~dGIlGLg~~~~s~~~~~~ 212 (471)
|.+.|++|+ ++|.+++|+|++++ ..++++.|||+....+. +.. ..++||||||+...+.....+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 999999955 89999999999998 78888999999988765 444 678999999999988544333
Q ss_pred hHHHHHHcCCCCCCeEEEEecCCCCC-CCCceEEECccCCCCCccceeEEeccccc--ceEEEEeeEEECCee----ccc
Q 012110 213 VWYNMVKQGLIQDPVFSFWLNRNQQE-DEGGEIVFGGVDPNHYKGKHTYVPVTQKG--YWQFNMGDVLIGGKP----TGY 285 (471)
Q Consensus 213 ~l~~L~~~g~I~~~~Fsl~L~~~~~~-~~~G~L~fGgiD~s~~~G~l~~~pv~~~~--~W~v~l~~i~vgg~~----i~~ 285 (471)
.+ +.. .++||+||.+.... ..+|.|+||++|+.++.+.++|+|+.... +|.|.+++|.|+++. ..+
T Consensus 192 ~~------~~~-~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 SF------YNA-INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cc------cCC-ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 22 222 23899999987533 25899999999999999999999998877 999999999999843 222
Q ss_pred ccCCceEEEcCCcccccccHHHHHHHHHHhCCcceeecccchhhcccchhhhhhhhhccCcccccccCCcccCCCccccc
Q 012110 286 CAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVS 365 (471)
Q Consensus 286 ~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~~~~~~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~ 365 (471)
+.....+|+||||+++++|.++|++|.+++++.-
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------- 298 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV---------------------------------------------- 298 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe----------------------------------------------
Confidence 3346889999999999999999999999998760
Q ss_pred ccccccccccCccccCcCCccccchhHHHHHHHHHHhhhcccHHHHHHHHHhhccCCCCCCCCeeEecccCCC----CCc
Q 012110 366 MGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSS----MPI 441 (471)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~p~ 441 (471)
+.....+.+.+.|..... +|.
T Consensus 299 -------------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~ 323 (398)
T KOG1339|consen 299 -------------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLPD 323 (398)
T ss_pred -------------------------------------------------------eccccCCceeeecccCCCCcccCCc
Confidence 002346778899998887 999
Q ss_pred EEEEEC-CEEEEeCCCcceEEccCCCc-cc
Q 012110 442 VSFTIG-GKVFDLSPEEDLGRRLHGSL-PY 469 (471)
Q Consensus 442 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 469 (471)
|+|+|+ |+.|.|+|++|+++..++.. |-
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~Cl 353 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGVCL 353 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCcee
Confidence 999998 89999999999999887654 64
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.3e-42 Score=351.27 Aligned_cols=223 Identities=31% Similarity=0.502 Sum_probs=184.9
Q ss_pred cEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEeEEEEEEEE
Q 012110 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVK 167 (471)
Q Consensus 88 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G~~~~D~v~ 167 (471)
..|+++|+||||+|++.|+|||||+++||++..|. ..++.|+|++|+|++..++.|++.|++|+++|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 46999999999999999999999999999998773 3467899999999999999999999999999999999999
Q ss_pred EeeEeeccce----EEEEEecCCccccccccceEEcCCCCcccC--CCCCchHHHHHHcCCCCCCeEEEEecCCC-----
Q 012110 168 VGDLVVKDQE----FIEATREPGVTFMVAKFDGILGLGFQEISV--GNAVPVWYNMVKQGLIQDPVFSFWLNRNQ----- 236 (471)
Q Consensus 168 ig~~~i~~~~----fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~----- 236 (471)
||+. .++. |+++....+.......++||||||++.++. ...++++++|++|+.+ +++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344433322111223679999999998764 2457899999999997 689999996421
Q ss_pred --CCCCCceEEECccCCCCCccceeEEecccccceEEEEeeEEECCeecccccC---CceEEEcCCcccccccHHHHHHH
Q 012110 237 --QEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAG---GCSAIADSGTSLLAGPTTVITMI 311 (471)
Q Consensus 237 --~~~~~G~L~fGgiD~s~~~G~l~~~pv~~~~~W~v~l~~i~vgg~~i~~~~~---~~~aiiDTGtt~i~lP~~~~~~i 311 (471)
+....|+|+|||+|+++|.|++.|+|+....+|.|.+++|.|++..+..... ...+|+||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999988753221 24699999999999999999999
Q ss_pred HHHhCCc
Q 012110 312 NHAIGAS 318 (471)
Q Consensus 312 ~~~i~a~ 318 (471)
.+++++.
T Consensus 234 ~~~l~~~ 240 (364)
T cd05473 234 VDAIKAA 240 (364)
T ss_pred HHHHHhh
Confidence 9999765
No 16
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3e-40 Score=343.53 Aligned_cols=215 Identities=27% Similarity=0.443 Sum_probs=175.7
Q ss_pred CCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccC--CCCCCCCCCCCcceeCC------------------
Q 012110 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACY--FHSKYKSSQSSTYKKNG------------------ 145 (471)
Q Consensus 86 ~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~y~~~~Sst~~~~~------------------ 145 (471)
.+..|+++|+||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 3678999999999999999999999999999999996 676 35799999999998642
Q ss_pred --eeEEEEeccCe-EEeEEEEEEEEEee-----EeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHH
Q 012110 146 --ESASIQYGTGA-IAGFFSYDSVKVGD-----LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNM 217 (471)
Q Consensus 146 --~~~~~~Y~~gs-~~G~~~~D~v~ig~-----~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L 217 (471)
+.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.+|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999987 46889999999876542 32 257999999998776 66776
Q ss_pred HHcCCCCCCeEEEEecCCC-CCCCCceEEECccCCCCCcc-ceeEEeccc---ccceEEEEeeEEECCeecccccC----
Q 012110 218 VKQGLIQDPVFSFWLNRNQ-QEDEGGEIVFGGVDPNHYKG-KHTYVPVTQ---KGYWQFNMGDVLIGGKPTGYCAG---- 288 (471)
Q Consensus 218 ~~~g~I~~~~Fsl~L~~~~-~~~~~G~L~fGgiD~s~~~G-~l~~~pv~~---~~~W~v~l~~i~vgg~~i~~~~~---- 288 (471)
... +. ++||+||.+.. +....|.|+||+. +++.+ .+.|+|+.. +.+|.|.+++|+||++.+..+..
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 43 59999997532 2234799999984 45554 489999863 46999999999999988764321
Q ss_pred --CceEEEcCCcccccccHHHHHHHHHHhC
Q 012110 289 --GCSAIADSGTSLLAGPTTVITMINHAIG 316 (471)
Q Consensus 289 --~~~aiiDTGtt~i~lP~~~~~~i~~~i~ 316 (471)
...+||||||+++++|+++|+++.+++.
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~ 334 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVE 334 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHH
Confidence 2479999999999999999999888764
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.5e-39 Score=322.95 Aligned_cols=239 Identities=31% Similarity=0.531 Sum_probs=208.4
Q ss_pred EEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccC-eEEeEEEEEEEE
Q 012110 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG-AIAGFFSYDSVK 167 (471)
Q Consensus 89 ~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g-s~~G~~~~D~v~ 167 (471)
.|+++|+||||+|++.|+|||||+++||+ .|.+.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 59999999999999999999999999996 678899995 589999999999
Q ss_pred EeeEeeccceEEEEEecCCccccccccceEEcCCCCcccC-----CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCc
Q 012110 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV-----GNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGG 242 (471)
Q Consensus 168 ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~-----~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G 242 (471)
+++..++++.||++.... ..+||||||+...+. ...++++++|+++|.|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998732 358999999988743 34567999999999999999999999753 2389
Q ss_pred eEEECccCCCCCccceeEEecccc------cceEEEEeeEEECCeecc--cccCCceEEEcCCcccccccHHHHHHHHHH
Q 012110 243 EIVFGGVDPNHYKGKHTYVPVTQK------GYWQFNMGDVLIGGKPTG--YCAGGCSAIADSGTSLLAGPTTVITMINHA 314 (471)
Q Consensus 243 ~L~fGgiD~s~~~G~l~~~pv~~~------~~W~v~l~~i~vgg~~i~--~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~ 314 (471)
.|+|||+|+++|.|++.|+|+... .+|.|.+++|.+++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hCCcceeecccchhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHH
Q 012110 315 IGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMA 394 (471)
Q Consensus 315 i~a~~~~~~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (471)
+++..
T Consensus 204 ~~~~~--------------------------------------------------------------------------- 208 (295)
T cd05474 204 LGATY--------------------------------------------------------------------------- 208 (295)
T ss_pred hCCEE---------------------------------------------------------------------------
Confidence 98761
Q ss_pred HHHHHHHhhhcccHHHHHHHHHhhccCCCCCCCCeeEecccCCCCCcEEEEECCEEEEeCCCcceEEccC----CCccc
Q 012110 395 VVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEDLGRRLH----GSLPY 469 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 469 (471)
....+.|.++|+.... |.|+|+|+|++|+|++++|+++..+ +..||
T Consensus 209 ----------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~ 258 (295)
T cd05474 209 ----------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACY 258 (295)
T ss_pred ----------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeE
Confidence 0124568899998777 9999999999999999999998753 67787
No 18
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=9.9e-40 Score=329.01 Aligned_cols=216 Identities=29% Similarity=0.442 Sum_probs=180.4
Q ss_pred cEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccC--CCCCCCCCCCCcceeC----------------CeeEE
Q 012110 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACY--FHSKYKSSQSSTYKKN----------------GESAS 149 (471)
Q Consensus 88 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~y~~~~Sst~~~~----------------~~~~~ 149 (471)
+.|+++|+||||+|++.|+|||||+++||+|..|. .|. .++.|+|.+|+|++.. .+.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999997 564 3478999999999863 56899
Q ss_pred EEeccCe-EEeEEEEEEEEEeeEeec-------cceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcC
Q 012110 150 IQYGTGA-IAGFFSYDSVKVGDLVVK-------DQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQG 221 (471)
Q Consensus 150 ~~Y~~gs-~~G~~~~D~v~ig~~~i~-------~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g 221 (471)
+.|++|+ +.|.+++|+|+||+..++ ++.||++....+ .+.....+||||||+...+. ..+++..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 789999999999987653 467999877654 34456789999999986542 233455577887
Q ss_pred CCCC--CeEEEEecCCCCCCCCceEEECccCCCCCc----------cceeEEecccccceEEEEeeEEECCee-cccccC
Q 012110 222 LIQD--PVFSFWLNRNQQEDEGGEIVFGGVDPNHYK----------GKHTYVPVTQKGYWQFNMGDVLIGGKP-TGYCAG 288 (471)
Q Consensus 222 ~I~~--~~Fsl~L~~~~~~~~~G~L~fGgiD~s~~~----------G~l~~~pv~~~~~W~v~l~~i~vgg~~-i~~~~~ 288 (471)
.+.. ++||+||.+. .|.|+|||+|++++. +++.|+|+..+.+|.|.+++|+|+++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7765 9999999864 799999999999987 889999999889999999999999886 111346
Q ss_pred CceEEEcCCcccccccHHHHHHHHHH
Q 012110 289 GCSAIADSGTSLLAGPTTVITMINHA 314 (471)
Q Consensus 289 ~~~aiiDTGtt~i~lP~~~~~~i~~~ 314 (471)
...++|||||+++++|++++++|.++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~ 256 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNF 256 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhh
Confidence 78899999999999999998886543
No 19
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.2e-38 Score=311.56 Aligned_cols=227 Identities=51% Similarity=0.901 Sum_probs=199.9
Q ss_pred EEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCC--CCCCCCCcceeCCeeEEEEeccCeEEeEEEEEEEE
Q 012110 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSK--YKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVK 167 (471)
Q Consensus 90 Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~--y~~~~Sst~~~~~~~~~~~Y~~gs~~G~~~~D~v~ 167 (471)
|+++|.||+|+|++.|++||||+++||++..|. ...|..... |++..|+++....+.+.+.|++|++.|.++.|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999996 222333333 88999999999999999999999999999999999
Q ss_pred EeeEeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEEC
Q 012110 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFG 247 (471)
Q Consensus 168 ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G~L~fG 247 (471)
+++..++++.||++..... .+.....+||||||+.........+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998765 344567899999999987766678899999999999999999999985322348999999
Q ss_pred ccCCCCCccceeEEeccc--ccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHHHHHhCCc
Q 012110 248 GVDPNHYKGKHTYVPVTQ--KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (471)
Q Consensus 248 giD~s~~~G~l~~~pv~~--~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~ 318 (471)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++||||++++++|++++++|++++++.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999987 78999999999999973222356789999999999999999999999999877
No 20
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.6e-39 Score=323.65 Aligned_cols=191 Identities=27% Similarity=0.473 Sum_probs=162.0
Q ss_pred EEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCe-EEeEEEEEEEE
Q 012110 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDSVK 167 (471)
Q Consensus 89 ~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (471)
+|+++|.||||||++.|+|||||+++||+|..| +.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 499999999999999999999999999976543 68999999998 58999999999
Q ss_pred EeeE-eeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEE
Q 012110 168 VGDL-VVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVF 246 (471)
Q Consensus 168 ig~~-~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G~L~f 246 (471)
||+. .++++.||++....+. + ...+||||||+...+ +..++..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987665 55566554 3689999998743 134899999
Q ss_pred CccCCCCCccceeEEecccc----cceEEEEeeEEECCeecccc---cCCceEEEcCCcccccccHHHHHHHHHHhCCc
Q 012110 247 GGVDPNHYKGKHTYVPVTQK----GYWQFNMGDVLIGGKPTGYC---AGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (471)
Q Consensus 247 GgiD~s~~~G~l~~~pv~~~----~~W~v~l~~i~vgg~~i~~~---~~~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~ 318 (471)
||+|++ .|++.|+|+... .+|.|++++|+|+++.+... .....++|||||+++++|++++++|.+++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~ 200 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAA 200 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHH
Confidence 999999 999999999753 68999999999999887542 24568999999999999999999999999754
No 21
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1e-35 Score=292.55 Aligned_cols=184 Identities=28% Similarity=0.426 Sum_probs=154.5
Q ss_pred cEEEEEEEEcCCCcEEEEEEecCCCcEEEeCC-CCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCe-EEeEEEEEE
Q 012110 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPST-NCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDS 165 (471)
Q Consensus 88 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~-~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs-~~G~~~~D~ 165 (471)
++|+++|.||||+|++.|+|||||+++||+|. .|. .| .+.|.++|++++ ++|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 36999999999999999999999999999884 564 45 467999999664 899999999
Q ss_pred EEEee----EeeccceEEEEEecCCcc-ccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCC
Q 012110 166 VKVGD----LVVKDQEFIEATREPGVT-FMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (471)
Q Consensus 166 v~ig~----~~i~~~~fg~a~~~~~~~-~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~ 240 (471)
|+++. ..++++.|||+....+.. ......+||||||+...+ ++++|..++.| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCC----C
Confidence 99964 477899999997654421 234568999999997655 88999999999 99999999863 2
Q ss_pred CceEEECccCCCCCccceeEEecccc---cceEEEEeeEEECCeecccccCCceEEEcCCcccccccHH
Q 012110 241 GGEIVFGGVDPNHYKGKHTYVPVTQK---GYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (471)
Q Consensus 241 ~G~L~fGgiD~s~~~G~l~~~pv~~~---~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~ 306 (471)
+|.|+|| |..++.|++.|+|+.+. .+|.|++.+|+||++.. ......++|||||+++++|++
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCc
Confidence 7899998 56677899999999764 79999999999999864 345678999999999999864
No 22
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5e-36 Score=293.43 Aligned_cols=178 Identities=30% Similarity=0.490 Sum_probs=153.3
Q ss_pred EEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCe-EEeEEEEEEEE
Q 012110 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDSVK 167 (471)
Q Consensus 89 ~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (471)
+|+++|+||||+|++.|+|||||+++||+| +.+.++|++|+ ++|.+++|+|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 499999999999999999999999999964 46788999775 89999999999
Q ss_pred EeeE--eeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEE
Q 012110 168 VGDL--VVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIV 245 (471)
Q Consensus 168 ig~~--~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~Fsl~L~~~~~~~~~G~L~ 245 (471)
+++. .++++.||++..... +....++||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999988764 455678999999987654 778888776 89999998753234589999
Q ss_pred ECccCCCCCccceeEEeccc----ccceEEEEeeEEECCeeccc--------ccCCceEEEcCCcccccccHH
Q 012110 246 FGGVDPNHYKGKHTYVPVTQ----KGYWQFNMGDVLIGGKPTGY--------CAGGCSAIADSGTSLLAGPTT 306 (471)
Q Consensus 246 fGgiD~s~~~G~l~~~pv~~----~~~W~v~l~~i~vgg~~i~~--------~~~~~~aiiDTGtt~i~lP~~ 306 (471)
|||+|++ +.+++.|+|+.. .++|.|.+++|+|+++.+.+ ......+++||||+++++|++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 9999999 999999999975 57999999999999987642 235678999999999998853
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.2e-32 Score=278.53 Aligned_cols=212 Identities=17% Similarity=0.227 Sum_probs=163.5
Q ss_pred EcCCCcE-EEEEEecCCCcEEEeCC----------CCCCCcccCCCCCCCCCC------CCcceeCCeeEEEE-eccCe-
Q 012110 96 IGTPPQK-FTVIFDTGSSNLWVPST----------NCYFSVACYFHSKYKSSQ------SSTYKKNGESASIQ-YGTGA- 156 (471)
Q Consensus 96 IGtP~Q~-~~v~lDTGSs~~WV~~~----------~C~~~~~C~~~~~y~~~~------Sst~~~~~~~~~~~-Y~~gs- 156 (471)
+|||-.+ +.|++||||+++||+|. .|. ...|..+..|++.. ++......|.+... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5777777 99999999999999665 453 45676666665542 22233334666554 77885
Q ss_pred EEeEEEEEEEEEee--------EeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcCCCCCCeE
Q 012110 157 IAGFFSYDSVKVGD--------LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVF 228 (471)
Q Consensus 157 ~~G~~~~D~v~ig~--------~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g~I~~~~F 228 (471)
.+|.+++|+++|+. ..++++.|||+.......+ ...+|||||||+..++ +..+|..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 78999999999973 3688999999976532112 3347999999999887 5667776655 57999
Q ss_pred EEEecCCCCCCCCceEEECccCCCCCc------cceeEEecccc----cceEEEEeeEEECCeecccc--------cCCc
Q 012110 229 SFWLNRNQQEDEGGEIVFGGVDPNHYK------GKHTYVPVTQK----GYWQFNMGDVLIGGKPTGYC--------AGGC 290 (471)
Q Consensus 229 sl~L~~~~~~~~~G~L~fGgiD~s~~~------G~l~~~pv~~~----~~W~v~l~~i~vgg~~i~~~--------~~~~ 290 (471)
|+||.+.. ..+|.|+||+.++.++. +++.|+|+... .+|.|+|++|+||++.+.++ .+..
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23899999999988774 78999999753 79999999999999887542 2345
Q ss_pred eEEEcCCcccccccHHHHHHHHHHhCCc
Q 012110 291 SAIADSGTSLLAGPTTVITMINHAIGAS 318 (471)
Q Consensus 291 ~aiiDTGtt~i~lP~~~~~~i~~~i~a~ 318 (471)
.+||||||+++++|+++|++|.+++.+.
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~ 258 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKA 258 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHH
Confidence 7999999999999999999999998643
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=6.9e-22 Score=166.93 Aligned_cols=108 Identities=61% Similarity=0.958 Sum_probs=95.2
Q ss_pred EEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCC-CCCCCCcceeCCeeEEEEeccCeEEeEEEEEEEEEee
Q 012110 92 GEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKY-KSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGD 170 (471)
Q Consensus 92 ~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y-~~~~Sst~~~~~~~~~~~Y~~gs~~G~~~~D~v~ig~ 170 (471)
++|.||||+|++.|+|||||+++||++..|. ...|..+..| ++..|++++...+.+.+.|++|++.|.++.|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 2234445566 9999999999999999999999999999999999999
Q ss_pred EeeccceEEEEEecCCccccccccceEEcC
Q 012110 171 LVVKDQEFIEATREPGVTFMVAKFDGILGL 200 (471)
Q Consensus 171 ~~i~~~~fg~a~~~~~~~~~~~~~dGIlGL 200 (471)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999887644445678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.85 E-value=3e-20 Score=168.73 Aligned_cols=136 Identities=35% Similarity=0.572 Sum_probs=107.1
Q ss_pred EEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeC----------------------Cee
Q 012110 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKN----------------------GES 147 (471)
Q Consensus 90 Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~----------------------~~~ 147 (471)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999976 2477888888888752 258
Q ss_pred EEEEeccCe-EEeEEEEEEEEEee-----EeeccceEEEEEecCCccccccccceEEcCCCCcccCCCCCchHHHHHHcC
Q 012110 148 ASIQYGTGA-IAGFFSYDSVKVGD-----LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQG 221 (471)
Q Consensus 148 ~~~~Y~~gs-~~G~~~~D~v~ig~-----~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~l~~L~~~g 221 (471)
|.+.|++++ +.|.+++|++.++. ..+.++.|||+....+. ....+||||||+...+ ++.||..+
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 68999999999986 45788999999987753 2278999999999888 89999888
Q ss_pred CCCCCeEEEEecCCCCCCCCceEEECc
Q 012110 222 LIQDPVFSFWLNRNQQEDEGGEIVFGG 248 (471)
Q Consensus 222 ~I~~~~Fsl~L~~~~~~~~~G~L~fGg 248 (471)
..+.||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 57999999998 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=98.97 E-value=7e-10 Score=100.40 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=41.4
Q ss_pred ceEEEEeeEEECCeecccccC-------CceEEEcCCcccccccHHHHHHHHHHhCCc
Q 012110 268 YWQFNMGDVLIGGKPTGYCAG-------GCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (471)
Q Consensus 268 ~W~v~l~~i~vgg~~i~~~~~-------~~~aiiDTGtt~i~lP~~~~~~i~~~i~a~ 318 (471)
+|.|++.+|+||++.+.+... ...++|||||++++||+++|+++.+++.+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~ 58 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ 58 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH
Confidence 588999999999999876543 467999999999999999999999998543
No 27
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=98.14 E-value=1.8e-06 Score=58.48 Aligned_cols=38 Identities=26% Similarity=0.658 Sum_probs=36.3
Q ss_pred cccchhHHHHHHHHHHhhhcccHHHHHHHHHhhccCCC
Q 012110 386 AMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMP 423 (471)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
..|.+|++++.++++.|.++.++++|+++|+++|.++|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 46999999999999999999999999999999999886
No 28
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.09 E-value=9.8e-06 Score=65.88 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=65.2
Q ss_pred EEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCe-EEeEEEEEEEE
Q 012110 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDSVK 167 (471)
Q Consensus 89 ~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ 167 (471)
.|++++.|| ++++.+++|||++.+|+...... .+. . . ........+...+|. .......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~---~--~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLG---L--P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcC---C--C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 589999999 69999999999999999764221 111 0 0 111234556677777 34556689999
Q ss_pred EeeEeeccceEEEEEecCCccccccccceEEcCC
Q 012110 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (471)
Q Consensus 168 ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg 201 (471)
+|+..++++.+.++..... ..+||||+.
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d 93 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMD 93 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChH
Confidence 9999999998887755331 469999985
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.36 E-value=0.0013 Score=56.38 Aligned_cols=100 Identities=19% Similarity=0.338 Sum_probs=66.4
Q ss_pred eeeeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEE-
Q 012110 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIA- 158 (471)
Q Consensus 80 ~~l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~- 158 (471)
+++....++.|++++.|. ++++.+++|||++.+-++...-. .-..++.. ......+.=..|...
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 455556689999999997 58999999999999988542110 00111111 122333444456544
Q ss_pred eEEEEEEEEEeeEeeccceEEEEEecCCccccccccceEEcCC
Q 012110 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (471)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg 201 (471)
..+.-|.+.+|++.+.|..+.++.... ..+|+||+.
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~ 102 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMS 102 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHH
Confidence 456889999999999999987764321 127999986
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.82 E-value=0.0079 Score=47.91 Aligned_cols=88 Identities=19% Similarity=0.277 Sum_probs=54.0
Q ss_pred EEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeE-EeEEEEEEEEEee
Q 012110 92 GEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAI-AGFFSYDSVKVGD 170 (471)
Q Consensus 92 ~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~-~G~~~~D~v~ig~ 170 (471)
+++.|+ ++++.+++|||++.+.+...... .. ...+.. ......+.-.+|.. ......+.+.+|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~------~l-~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK------KL-GLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH------Hc-CCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 367787 58999999999998888543321 00 011110 11123333344443 3455666899999
Q ss_pred EeeccceEEEEEecCCccccccccceEEcCC
Q 012110 171 LVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (471)
Q Consensus 171 ~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg 201 (471)
..+.+..+.+.. .....+||||+-
T Consensus 66 ~~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 988888776665 123458999974
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.51 E-value=0.1 Score=44.79 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=56.7
Q ss_pred CcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEE-EEeccCe--EEeEEEE
Q 012110 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESAS-IQYGTGA--IAGFFSY 163 (471)
Q Consensus 87 ~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~-~~Y~~gs--~~G~~~~ 163 (471)
...+++++.|+ ++++.+++|||++..++...-+. .+.- .... ...+. ...+.|. ..|....
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl----~~~~-------~~~~~~~~~g~g~~~~~g~~~~ 77 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGL----MRLI-------DKRFQGIAKGVGTQKILGRIHL 77 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCC----cccc-------CcceEEEEecCCCcEEEeEEEE
Confidence 45789999998 68999999999999998543221 1111 0000 11111 1222232 4577778
Q ss_pred EEEEEeeEeeccceEEEEEecCCccccccccceEEcCC
Q 012110 164 DSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (471)
Q Consensus 164 D~v~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg 201 (471)
+.+.+++...+ ..|.+... ...|+|||+-
T Consensus 78 ~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d 106 (124)
T cd05479 78 AQVKIGNLFLP-CSFTVLED--------DDVDFLIGLD 106 (124)
T ss_pred EEEEECCEEee-eEEEEECC--------CCcCEEecHH
Confidence 89999998765 56655432 1459999985
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.27 E-value=0.19 Score=50.68 Aligned_cols=196 Identities=18% Similarity=0.251 Sum_probs=102.3
Q ss_pred EEEEEEEcCCC----cEEE-EEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeE--EEEeccCeEEeEEE
Q 012110 90 YYGEIGIGTPP----QKFT-VIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESA--SIQYGTGAIAGFFS 162 (471)
Q Consensus 90 Y~~~I~IGtP~----Q~~~-v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~--~~~Y~~gs~~G~~~ 162 (471)
-++.|+|=.|+ |++. |++||||.-+=|..+--.. ..........+ .+.+. -..|++|..=|.+.
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr 94 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTG-----GGAPLAECAQFASGYTWGSVR 94 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccC-----CCcchhhhhhccCcccccceE
Confidence 45666664443 5554 9999999977665432210 00001111111 11111 24567777668899
Q ss_pred EEEEEEeeEeeccceEEEEEecC-----------Cc---cccccccceEEcCCCCcccC----------C------CCCc
Q 012110 163 YDSVKVGDLVVKDQEFIEATREP-----------GV---TFMVAKFDGILGLGFQEISV----------G------NAVP 212 (471)
Q Consensus 163 ~D~v~ig~~~i~~~~fg~a~~~~-----------~~---~~~~~~~dGIlGLg~~~~s~----------~------~~~~ 212 (471)
+..|+|++....+..+.++.+.. +. ......++||||+|.-.... . ...+
T Consensus 95 ~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~s 174 (370)
T PF11925_consen 95 TADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGS 174 (370)
T ss_pred EEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCC
Confidence 99999999876667666664421 00 11134679999998653321 0 0000
Q ss_pred -hHHHHHHcCCCCCCeEEEEecCC------------CCCCCCceEEECccCCCC---CccceeEEecccccceEEEEeeE
Q 012110 213 -VWYNMVKQGLIQDPVFSFWLNRN------------QQEDEGGEIVFGGVDPNH---YKGKHTYVPVTQKGYWQFNMGDV 276 (471)
Q Consensus 213 -~l~~L~~~g~I~~~~Fsl~L~~~------------~~~~~~G~L~fGgiD~s~---~~G~l~~~pv~~~~~W~v~l~~i 276 (471)
.-..+-...++..|+..|-.+++ ......|.|+|| |+... ..+..+..+..+.++....
T Consensus 175 Ct~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFG-IgTQsNN~l~~~~~~~~~~~~G~~tt~---- 249 (370)
T PF11925_consen 175 CTSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFG-IGTQSNNALPSGATVLTTDSNGDFTTT---- 249 (370)
T ss_pred eecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEe-cCCcccCcccccceEEeecCCceEEEE----
Confidence 00111111235566666544332 133468999998 33221 1222455555555553322
Q ss_pred EECCeecccccCCceEEEcCCcccccccHH
Q 012110 277 LIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (471)
Q Consensus 277 ~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~ 306 (471)
++|... ....||||+.-.++|..
T Consensus 250 -~~G~t~------~~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 250 -FNGQTY------SASFFDSGSNGYFFPDS 272 (370)
T ss_pred -ecCcee------eeeeEecCCceeeccCC
Confidence 233322 13499999998887754
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=95.11 E-value=0.13 Score=47.47 Aligned_cols=92 Identities=15% Similarity=0.227 Sum_probs=68.1
Q ss_pred CcceeeeeecCCcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccC
Q 012110 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (471)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g 155 (471)
+...+.|....++.|.++..|- +|.+.+++|||-+.+.++...-. .--++.+. .+.++.+.-.+|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccCC
Confidence 4557888888899999999998 69999999999999888654321 12344322 234556666788
Q ss_pred eEE-eEEEEEEEEEeeEeeccceEEEEE
Q 012110 156 AIA-GFFSYDSVKVGDLVVKDQEFIEAT 182 (471)
Q Consensus 156 s~~-G~~~~D~v~ig~~~i~~~~fg~a~ 182 (471)
... ..+-.|+|.||++.+.|..--++.
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~~ 184 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVAE 184 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhheec
Confidence 765 568899999999998887665554
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.37 E-value=0.19 Score=40.50 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=46.6
Q ss_pred EEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCe---EEeEEEEEEE
Q 012110 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA---IAGFFSYDSV 166 (471)
Q Consensus 90 Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs---~~G~~~~D~v 166 (471)
|++.+.|+ ++++.+++||||+..++....+. ....+. .......+.=.+|. +.|.+ .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889998 69999999999999999654431 111110 11223333334444 35766 7889
Q ss_pred EEeeEeeccceEEEEE
Q 012110 167 KVGDLVVKDQEFIEAT 182 (471)
Q Consensus 167 ~ig~~~i~~~~fg~a~ 182 (471)
++++... ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998773 35554443
No 35
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=93.87 E-value=0.069 Score=40.83 Aligned_cols=37 Identities=32% Similarity=0.753 Sum_probs=35.8
Q ss_pred ccchhHHHHHHHHHHhhhcccHHHHHHHHHhhccCCC
Q 012110 387 MCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMP 423 (471)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
.|.+|++++..+++.+.++.+++.+.+.+.++|+++|
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999998
No 36
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=93.06 E-value=0.02 Score=37.59 Aligned_cols=33 Identities=45% Similarity=1.043 Sum_probs=31.4
Q ss_pred ccchhhcccchhhhhhhhhccCcccccccCCcc
Q 012110 324 QCKAVVEQYGQTILDLLLFEAHPKKICSQMGLC 356 (471)
Q Consensus 324 ~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C 356 (471)
.|+..+..|++..|+...++++|+.+|...|.|
T Consensus 3 ~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 3 ECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 488999999999999999999999999999998
No 37
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=91.47 E-value=1.2 Score=35.48 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=46.5
Q ss_pred EEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCeEEeEE-EEE-EEEEee
Q 012110 93 EIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFF-SYD-SVKVGD 170 (471)
Q Consensus 93 ~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs~~G~~-~~D-~v~ig~ 170 (471)
++.|. ++++.+++|||++.+-+...... .... ......+.=..|.....+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~--------~~~~---------~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP--------KQEL---------STTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh--------hccC---------CCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 45666 69999999999999999765442 0011 112223322333321111 123 699999
Q ss_pred EeeccceEEEEEecCCccccccccceEEcCCC
Q 012110 171 LVVKDQEFIEATREPGVTFMVAKFDGILGLGF 202 (471)
Q Consensus 171 ~~i~~~~fg~a~~~~~~~~~~~~~dGIlGLg~ 202 (471)
....+ .|.+.... .++|||+.+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 88885 45444321 278999853
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.26 E-value=1.3 Score=34.03 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=28.1
Q ss_pred CcEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCC
Q 012110 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTN 120 (471)
Q Consensus 87 ~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~ 120 (471)
.+.+++++.|| ++.+..++|||++...|+...
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~ 37 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESL 37 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHH
Confidence 57899999999 599999999999999886543
No 39
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=83.34 E-value=0.86 Score=37.25 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=15.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhhc
Q 012110 1 MGTKIRAVPLSLFLSSLLFSLVASVS 26 (471)
Q Consensus 1 M~~~~~~~~~~l~~~~ll~~~~~a~~ 26 (471)
|+++.+++|.++++++||.++..+++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhH
Confidence 88777666666666656555544443
No 40
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=80.28 E-value=1.1 Score=28.02 Aligned_cols=24 Identities=38% Similarity=0.266 Sum_probs=16.5
Q ss_pred eEEEeeeecCCCchhhhhhcchhh
Q 012110 30 LVRIGLKKMKLDPNNRLAARLESE 53 (471)
Q Consensus 30 ~~~ipl~r~~~~~~~~~~~~~~~~ 53 (471)
+++|||+|.++.++.+.+.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999999998887663
No 41
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=78.07 E-value=4.1 Score=38.52 Aligned_cols=88 Identities=23% Similarity=0.466 Sum_probs=66.4
Q ss_pred ccchhhcccchhhhhhhhhccCcccccccCCcccCCCcccccccccccccccCccccCcCCccccchhHHHHHHHHHHhh
Q 012110 324 QCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQ 403 (471)
Q Consensus 324 ~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (471)
.|...+..|++..|+...+.+.|..+|.-++.|.-... +..+.. ++.+. ...|-+|++++-++...|+
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~----~~~~~~------~~~~~--~~~C~~C~~~V~~~~~~l~ 145 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAG----PVSEVF------ASQPA--AGECELCRETVTEADTKLQ 145 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccc----hhhhhh------hhccc--ccccHHHHHHHHHHHHhcc
Confidence 69999999999999999999999999999999996211 111111 11122 5679999999999999999
Q ss_pred h-cccHHHHHHHHHhhccCCC
Q 012110 404 Q-NQTQENILQYVNELCDRMP 423 (471)
Q Consensus 404 ~-~~~~~~~~~~~~~~~~~~~ 423 (471)
. +-++.++-.-....|...+
T Consensus 146 d~~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 146 DKPKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred cchhHHHHHHHHHHhhccCCc
Confidence 9 5566666677777785444
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=76.97 E-value=3.8 Score=33.21 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=23.8
Q ss_pred EEEEEEcCCCcEEEEEEecCCCcEEEeCCCC
Q 012110 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (471)
Q Consensus 91 ~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C 121 (471)
+.+|.|. ++++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5678888 5899999999999998876543
No 43
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=74.51 E-value=3.1 Score=39.29 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=41.0
Q ss_pred CccccchhHHHHHHHHHHhhhcccHHHHHHHHHhhccCCCCCCCCeeEeccc
Q 012110 384 NNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGK 435 (471)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 435 (471)
+...|-+|++++..++..++++ ..+|+..|...|.+.+...+. .|..
T Consensus 35 ~~~~C~lCe~~v~~i~~~~~~~--~~~i~~~l~~~Ckkl~~~~~~---~C~~ 81 (218)
T KOG1340|consen 35 SAEVCELCELVVKRIQEYLDKN--QNELKEDLHAECKKLPKAIPF---ECLS 81 (218)
T ss_pred ccchhHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHhcccchH---HHHH
Confidence 5678999999999999999999 889999999999999977654 5643
No 44
>PF13650 Asp_protease_2: Aspartyl protease
Probab=67.37 E-value=6.4 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=23.0
Q ss_pred EEECCeecccccCCceEEEcCCcccccccHHHHHHH
Q 012110 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (471)
Q Consensus 276 i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i 311 (471)
+.|+|+. ..+++|||++...++++.++++
T Consensus 3 v~vng~~-------~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKP-------VRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEE-------EEEEEcCCCCcEEECHHHHHHc
Confidence 4566653 3679999999999999888776
No 45
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=64.85 E-value=12 Score=32.18 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=47.8
Q ss_pred cEEEEEEEEcCCCcEEEEEEecCCCcEEEeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCe--EEeEEEEEE
Q 012110 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA--IAGFFSYDS 165 (471)
Q Consensus 88 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs--~~G~~~~D~ 165 (471)
...|+++.|+ ++++..++|||...+-+... |. ..|.-...-+. . .-...+|-|. +-|.+..-.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~-~a--~r~gL~~lid~---------r-~~g~a~GvG~~~i~G~Ih~~~ 87 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKS-CA--ERCGLMRLIDK---------R-FAGVAKGVGTQKILGRIHSVQ 87 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHH-HH--HHTTGGGGEEG---------G-G-EE-------EEEEEEEEEE
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHH-HH--HHcCChhhccc---------c-ccccccCCCcCceeEEEEEEE
Confidence 4689999999 69999999999999877532 21 13432221111 0 1122334444 678888888
Q ss_pred EEEeeEeeccceEEEEEecCCccccccccceEEcC
Q 012110 166 VKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGL 200 (471)
Q Consensus 166 v~ig~~~i~~~~fg~a~~~~~~~~~~~~~dGIlGL 200 (471)
+.+|+..++ ..|-+..+ ...+=+|||
T Consensus 88 l~ig~~~~~-~s~~Vle~--------~~~d~llGl 113 (124)
T PF09668_consen 88 LKIGGLFFP-CSFTVLED--------QDVDLLLGL 113 (124)
T ss_dssp EEETTEEEE-EEEEEETT--------SSSSEEEEH
T ss_pred EEECCEEEE-EEEEEeCC--------CCcceeeeH
Confidence 888886655 44444432 223567776
No 46
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=62.90 E-value=8.4 Score=32.82 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=27.1
Q ss_pred cccceEEEEeeEEECCeecccccCCceEEEcCCcccccccHHHHHHH
Q 012110 265 QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (471)
Q Consensus 265 ~~~~W~v~l~~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i 311 (471)
..+++.+. +.|+|++. .+++|||++.+.+++++.+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 34445443 45677643 579999999999999988775
No 47
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=61.08 E-value=12 Score=28.52 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.7
Q ss_pred EEECCeecccccCCceEEEcCCcccccccHHHHHHH
Q 012110 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (471)
Q Consensus 276 i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i 311 (471)
+.|++..+ .+++|||++-.+++.++++.+
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 45666544 479999999999999999887
No 48
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=59.99 E-value=13 Score=29.88 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.0
Q ss_pred EEEEcCCCcEEEEEEecCCCcEEEeCCCC
Q 012110 93 EIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (471)
Q Consensus 93 ~I~IGtP~Q~~~v~lDTGSs~~WV~~~~C 121 (471)
.+.|+ +|.+.+++|||+.++-+.....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccccc
Confidence 45666 6999999999999999975443
No 49
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=59.43 E-value=12 Score=29.91 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=24.9
Q ss_pred eEEECCeecccccCCceEEEcCCcccccccHHHHHHHH
Q 012110 275 DVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMIN 312 (471)
Q Consensus 275 ~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~ 312 (471)
.+.|+|+.+ .+.+|||++...++++.+..+-
T Consensus 4 ~~~Ing~~i-------~~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPL-------KFQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEE-------EEEEcCCcceEEeCHHHHHHhC
Confidence 356777765 4699999999999999988653
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=53.56 E-value=17 Score=32.67 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=21.2
Q ss_pred EEEEEcCCCcEEEEEEecCCCcEEEeCC
Q 012110 92 GEIGIGTPPQKFTVIFDTGSSNLWVPST 119 (471)
Q Consensus 92 ~~I~IGtP~Q~~~v~lDTGSs~~WV~~~ 119 (471)
..+.++..+.++.++|||||+..++...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3444444468999999999999888654
No 51
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=53.06 E-value=79 Score=27.43 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=24.5
Q ss_pred cEEEEEEEEcCCCcEEEEEEecCCCcEEEeC
Q 012110 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPS 118 (471)
Q Consensus 88 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~WV~~ 118 (471)
..-.+.+.|.+ ++..+++|+|++..+|..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 35678888985 899999999999998854
No 52
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=52.80 E-value=21 Score=27.96 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.5
Q ss_pred EEECCeecccccCCceEEEcCCcccccccHHHHHHH
Q 012110 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (471)
Q Consensus 276 i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i 311 (471)
+.+++.. ..+++|||++.+.++.+..+.+
T Consensus 7 v~i~~~~-------~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQP-------VRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEE-------EEEEEECCCCcEEcCHHHHHHc
Confidence 4566544 4679999999999999887765
No 53
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=50.48 E-value=17 Score=28.71 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=23.8
Q ss_pred EEECCeecccccCCceEEEcCCcccccccHHHHHHH
Q 012110 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (471)
Q Consensus 276 i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i 311 (471)
+.|||..+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 45677654 469999999999999999876
No 54
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=45.11 E-value=23 Score=30.12 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=22.0
Q ss_pred EEECCeecccccCCceEEEcCCcccccccHHHHHH
Q 012110 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITM 310 (471)
Q Consensus 276 i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~ 310 (471)
+.++|..+ .+++|||++...++++.+++
T Consensus 21 ~~Ing~~~-------~~LvDTGAs~s~Is~~~a~~ 48 (124)
T cd05479 21 VEINGVPV-------KAFVDSGAQMTIMSKACAEK 48 (124)
T ss_pred EEECCEEE-------EEEEeCCCceEEeCHHHHHH
Confidence 44566543 57999999999999988776
No 55
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=41.30 E-value=8 Score=29.03 Aligned_cols=37 Identities=49% Similarity=0.984 Sum_probs=33.2
Q ss_pred eeecccchhhcccchhhhhhhhhccCcccccccCCcc
Q 012110 320 VVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLC 356 (471)
Q Consensus 320 ~~~~~C~~~~~~fg~~~i~~~~~~~~~~~~c~~~g~C 356 (471)
.+..-|...+..|++..|+...+...|..+|+..|.|
T Consensus 40 ~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 40 SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 3556799999999999999999999999999999988
No 56
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=38.53 E-value=22 Score=29.56 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.4
Q ss_pred CceEEEcCCccccc-ccHHHHHH
Q 012110 289 GCSAIADSGTSLLA-GPTTVITM 310 (471)
Q Consensus 289 ~~~aiiDTGtt~i~-lP~~~~~~ 310 (471)
.-.+++|||.+... +|.++++.
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~ 38 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNK 38 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHH
Confidence 45689999999886 99988776
No 57
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=36.26 E-value=2.2e+02 Score=22.98 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.4
Q ss_pred EEEEEEecCCCcEEEeCCCCC
Q 012110 102 KFTVIFDTGSSNLWVPSTNCY 122 (471)
Q Consensus 102 ~~~v~lDTGSs~~WV~~~~C~ 122 (471)
...+++|||+...-+|...+.
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CcEEEEeCCCceEeecccccc
Confidence 468999999999999876653
No 58
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=35.58 E-value=65 Score=30.16 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=24.5
Q ss_pred EEECCeecccccCCceEEEcCCcccccccHHHHHHHH
Q 012110 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMIN 312 (471)
Q Consensus 276 i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i~ 312 (471)
..|||+.+. .++|||.|.+.++++..+.+-
T Consensus 110 ~~VNGk~v~-------fLVDTGATsVal~~~dA~RlG 139 (215)
T COG3577 110 GRVNGKKVD-------FLVDTGATSVALNEEDARRLG 139 (215)
T ss_pred EEECCEEEE-------EEEecCcceeecCHHHHHHhC
Confidence 567887764 599999999999999887753
No 59
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.67 E-value=25 Score=30.05 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=18.8
Q ss_pred EEEcCCcc-cccccHHHHHHHHH
Q 012110 292 AIADSGTS-LLAGPTTVITMINH 313 (471)
Q Consensus 292 aiiDTGtt-~i~lP~~~~~~i~~ 313 (471)
.++|||-+ ++.+|+++++++..
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~ 51 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGL 51 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCC
Confidence 48999999 99999999887643
No 60
>PRK02710 plastocyanin; Provisional
Probab=30.27 E-value=62 Score=27.31 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=19.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhhcCCceEEEee
Q 012110 1 MGTKIRAVPLSLFLSSLLFSLVASVSNDGLVRIGL 35 (471)
Q Consensus 1 M~~~~~~~~~~l~~~~ll~~~~~a~~~~~~~~ipl 35 (471)
|.++.+++++.++++++.+.+..+.+.+..++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~ 35 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKM 35 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEE
Confidence 66666777665555544444444444555566654
No 61
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.82 E-value=65 Score=26.68 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=39.5
Q ss_pred EEEEEcCCC----cEEEEEEecCCCcEE-EeCCCCCCCcccCCCCCCCCCCCCcceeCCeeEEEEeccCe-EEeEEEEEE
Q 012110 92 GEIGIGTPP----QKFTVIFDTGSSNLW-VPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDS 165 (471)
Q Consensus 92 ~~I~IGtP~----Q~~~v~lDTGSs~~W-V~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~gs-~~G~~~~D~ 165 (471)
+++.|..|. -++.+++|||.+..- ++...-. .-...+.. .....-++|. +.-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 577888872 278899999999764 5432110 00111111 2244456665 455677889
Q ss_pred EEEeeEee
Q 012110 166 VKVGDLVV 173 (471)
Q Consensus 166 v~ig~~~i 173 (471)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 62
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=25.16 E-value=77 Score=27.21 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=22.0
Q ss_pred eEEECCeecccccCCceEEEcCCcccccccHHHHHHH
Q 012110 275 DVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (471)
Q Consensus 275 ~i~vgg~~i~~~~~~~~aiiDTGtt~i~lP~~~~~~i 311 (471)
.+.++|..+ .|++|||+..+.++.+.++++
T Consensus 28 ~~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 355677654 579999999999999988773
No 63
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=25.09 E-value=79 Score=26.54 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=31.4
Q ss_pred CCccccchhHHHHHHHHH---------HhhhcccHHHHHHHHHhh
Q 012110 383 LNNAMCSACEMAVVWMQN---------QLQQNQTQENILQYVNEL 418 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 418 (471)
.+.+.|+-|.-+..||++ ...++++.++++..+.++
T Consensus 5 y~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~ 49 (113)
T cd03033 5 YEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL 49 (113)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence 567899999999999985 677889999999999865
No 64
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=22.12 E-value=1.1e+02 Score=25.93 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=15.0
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhh-cC---CceEEEe
Q 012110 1 MGTKIRAVPLSLFLSSLLFSLVASV-SN---DGLVRIG 34 (471)
Q Consensus 1 M~~~~~~~~~~l~~~~ll~~~~~a~-~~---~~~~~ip 34 (471)
|.+|.++++.+++-++.|+..+.|. ++ .|..+||
T Consensus 2 ~sr~~Ra~Ls~~ln~LAL~~S~tA~~sSyWC~GTqKVp 39 (118)
T PF07803_consen 2 MSRRQRALLSLILNLLALAFSTTALLSSYWCEGTQKVP 39 (118)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccccccceecC
Confidence 4566665544333333333333332 22 2555665
No 65
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=21.30 E-value=1.1e+02 Score=29.23 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=29.7
Q ss_pred ceeeeeecCCcEEEEE---EEEcC-----CCcEEEEEEecCCCcEEEeCCC
Q 012110 78 DIVALKNYMDAQYYGE---IGIGT-----PPQKFTVIFDTGSSNLWVPSTN 120 (471)
Q Consensus 78 ~~~~l~n~~~~~Y~~~---I~IGt-----P~Q~~~v~lDTGSs~~WV~~~~ 120 (471)
..+|+.......|.+. |.||. ......++||||++.+++|..-
T Consensus 170 ~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 170 TYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred EEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHH
Confidence 4456555334566654 67775 2456789999999999998654
Done!